assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000281195.1_ASM28119v1	NC_018221	Enterococcus faecalis D32, complete sequence	1	498298-498926	1,1,1	PILER-CR,CRISPRCasFinder,CRT	no	cas9,cas1,cas2,csn2	WYL,csa3,cas3,cas9,cas1,cas2,csn2,cas14j,DinG,DEDDh	Type II-B,Type II-C,Type II-A	GTTTTAGAGTCATGTTGTTTAGAATGGTACCAAAAC,GTTTTAGAGTCATGTTGTTTAGAATGGTACCAAAAC,GTTTTAGAGTCATGTTGTTTAGAATGGTACCAAAAC	36,36,36	0	0	NA	NA	II-A,II-B:II-A,II-B:II-A,II-B	8,9,9	9	TypeII-B,TypeII-C,TypeII-A	WYL,csa3,cas3,cas9,cas1,cas2,csn2,cas14j,DinG,DEDDh	NA|78aa|up_4|NC_018221.1_491629_491863_+,NA	NA|141aa|up_9|NC_018221.1_485168_485591_-	COG0295, Cdd, Cytidine deaminase [Nucleotide transport and metabolism]	NA|515aa|up_8|NC_018221.1_485719_487264_-	PRK14022, PRK14022, UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase	NA|550aa|up_7|NC_018221.1_487443_489093_+	cd13124, MATE_SpoVB_like, Stage V sporulation protein B, also known as Stage III sporulation protein F, and related proteins	NA|245aa|up_6|NC_018221.1_489201_489936_+	COG1187, RsuA, 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases [Translation, ribosomal structure and biogenesis]	NA|472aa|up_5|NC_018221.1_490069_491485_+	TIGR01886, Beta-Ala-Xaa_dipeptidase, dipeptidase PepV	NA|78aa|up_4|NC_018221.1_491629_491863_+	NA	cas9|1338aa|up_3|NC_018221.1_492338_496352_+	COG3513, COG3513, Predicted CRISPR-associated nuclease, contains McrA/HNH-nuclease and RuvC-like nuclease domain [Defense mechanisms]	cas1|289aa|up_2|NC_018221.1_496352_497219_+	cd09720, Cas1_II, CRISPR/Cas system-associated protein Cas1	cas2|110aa|up_1|NC_018221.1_497215_497545_+	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms]	csn2|220aa|up_0|NC_018221.1_497545_498205_+	cd09758, Csn2, CRISPR/Cas system-associated protein Csn2	NA|318aa|down_0|NC_018221.1_500557_501511_+	COG1125, OpuBA, ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]	NA|506aa|down_1|NC_018221.1_501511_503029_+	cd13610, PBP2_ChoS, Substrate-binding domain ChoS of an osmoregulated ABC-type transporter and related proteins; type 2 periplasmic-binding protein fold	NA|152aa|down_2|NC_018221.1_503170_503626_+	COG1438, ArgR, Arginine repressor [Transcription]	NA|503aa|down_3|NC_018221.1_503659_505168_+	PLN02371, PLN02371, phosphoglucosamine mutase family protein	NA|185aa|down_4|NC_018221.1_505191_505746_+	COG1670, RimL, Acetyltransferases, including N-acetylases of ribosomal proteins [Translation, ribosomal structure and biogenesis]	NA|284aa|down_5|NC_018221.1_505868_506720_-	COG0564, RluA, Pseudouridylate synthases, 23S RNA-specific [Translation, ribosomal structure and biogenesis]	NA|729aa|down_6|NC_018221.1_507074_509261_+	TIGR02074, Includes:_Penicillin-insensitive_transglycosylase, penicillin-binding protein, 1A family	NA|114aa|down_7|NC_018221.1_509323_509665_+	PRK13676, PRK13676, YlbF/YmcA family competence regulator	NA|412aa|down_8|NC_018221.1_509819_511055_+	cd00840, MPP_Mre11_N, Mre11 nuclease, N-terminal metallophosphatase domain	NA|904aa|down_9|NC_018221.1_511051_513763_+	COG4717, COG4717, Uncharacterized conserved protein [Function unknown]
GCF_000281195.1_ASM28119v1	NC_018221	Enterococcus faecalis D32, complete sequence	2	1772093-1772986	2,2,2	CRISPRCasFinder,CRT,PILER-CR	no		WYL,csa3,cas3,cas9,cas1,cas2,csn2,cas14j,DinG,DEDDh	Orphan	GTTTTGGTACCATTCTAAACAACATGACTCTAAAAC,GTTTTGGTACCATTCTAAACAACATGACTCTAAAAC,GTTTTAGAGTCATGTTGTTTAGAATGGTACCAAAAC	36,36,36	1	1	1772195-1772224	NC_018221.1_2336134-2336163	II-A,II-B:II-A,II-B:II-A,II-B	13,13,8	13	Orphan	WYL,csa3,cas3,cas9,cas1,cas2,csn2,cas14j,DinG,DEDDh	NA,NA	NA|250aa|up_9|NC_018221.1_1757994_1758744_-	COG1136, SalX, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]	NA|234aa|up_8|NC_018221.1_1758861_1759563_-	COG2188, PhnF, Transcriptional regulators [Transcription]	NA|808aa|up_7|NC_018221.1_1759692_1762116_-	COG1674, FtsK, DNA segregation ATPase FtsK/SpoIIIE and related proteins [Cell division and chromosome partitioning]	NA|404aa|up_6|NC_018221.1_1762429_1763641_-	COG1252, Ndh, NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]	NA|302aa|up_5|NC_018221.1_1763669_1764575_-	PRK06080, PRK06080, 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Validated	NA|327aa|up_4|NC_018221.1_1764696_1765677_+	COG0142, IspA, Geranylgeranyl pyrophosphate synthase [Coenzyme metabolism]	NA|589aa|up_3|NC_018221.1_1765756_1767523_-	COG4987, CydC, ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]	NA|578aa|up_2|NC_018221.1_1767519_1769253_-	TIGR02857, transport_ATP-binding_protein, thiol reductant ABC exporter, CydD subunit	NA|338aa|up_1|NC_018221.1_1769257_1770271_-	pfam02322, Cyt_bd_oxida_II, Cytochrome bd terminal oxidase subunit II	NA|473aa|up_0|NC_018221.1_1770267_1771686_-	pfam01654, Cyt_bd_oxida_I, Cytochrome bd terminal oxidase subunit I	NA|288aa|down_0|NC_018221.1_1773143_1774007_-	COG2207, AraC, AraC-type DNA-binding domain-containing proteins [Transcription]	NA|750aa|down_1|NC_018221.1_1774091_1776341_-	PRK07726, PRK07726, DNA topoisomerase 3	NA|122aa|down_2|NC_018221.1_1776303_1776669_-	pfam06279, DUF1033, Protein of unknown function (DUF1033)	NA|190aa|down_3|NC_018221.1_1776766_1777336_-	pfam13305, WHG, WHG domain	NA|172aa|down_4|NC_018221.1_1777468_1777984_+	cd00865, PEBP_bact_arch, PhosphatidylEthanolamine-Binding Protein (PEBP) domain present in bacteria and archaea	NA|413aa|down_5|NC_018221.1_1778000_1779239_+	cd17391, MFS_MdtG_MDR_like, Multidrug resistance protein MdtG and similar multidrug resistance (MDR) transporters of the Major Facilitator Superfamily	NA|375aa|down_6|NC_018221.1_1779418_1780543_-	PRK00143, mnmA, tRNA-specific 2-thiouridylase MnmA; Reviewed	NA|115aa|down_7|NC_018221.1_1780768_1781113_-	pfam08866, DUF1831, Putative amino acid metabolism	NA|382aa|down_8|NC_018221.1_1781180_1782326_-	COG1104, NifS, Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes [Amino acid transport and metabolism]	NA|325aa|down_9|NC_018221.1_1782482_1783457_-	PRK02458, PRK02458, ribose-phosphate pyrophosphokinase; Provisional
GCF_000281195.1_ASM28119v1	NC_018221	Enterococcus faecalis D32, complete sequence	3	1976119-1976377	3	CRISPRCasFinder	no		WYL,csa3,cas3,cas9,cas1,cas2,csn2,cas14j,DinG,DEDDh	Orphan	TCATATCTATAACATTACTTGTATC	25	0	0	NA	NA	NA	3	3	Orphan	WYL,csa3,cas3,cas9,cas1,cas2,csn2,cas14j,DinG,DEDDh	NA|260aa|up_4|NC_018221.1_1969559_1970339_-,NA|75aa|up_3|NC_018221.1_1973234_1973459_-,NA|109aa|up_2|NC_018221.1_1973462_1973789_-,NA|60aa|down_0|NC_018221.1_1978152_1978332_-,NA|84aa|down_2|NC_018221.1_1980306_1980558_-,NA|173aa|down_4|NC_018221.1_1981910_1982429_-	NA|606aa|up_9|NC_018221.1_1964468_1966286_-	COG1086, COG1086, Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]	NA|254aa|up_8|NC_018221.1_1966298_1967060_-	COG4464, CapC, Capsular polysaccharide biosynthesis protein [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]	NA|231aa|up_7|NC_018221.1_1967079_1967772_-	cd05387, BY-kinase, bacterial tyrosine-kinase	NA|260aa|up_6|NC_018221.1_1967783_1968563_-	COG3944, COG3944, Capsular polysaccharide biosynthesis protein [Cell envelope biogenesis, outer membrane]	NA|315aa|up_5|NC_018221.1_1968578_1969523_-	PRK09379, PRK09379, LytR family transcriptional regulator	NA|260aa|up_4|NC_018221.1_1969559_1970339_-	NA	NA|75aa|up_3|NC_018221.1_1973234_1973459_-	NA	NA|109aa|up_2|NC_018221.1_1973462_1973789_-	NA	NA|189aa|up_1|NC_018221.1_1973886_1974453_-	pfam13731, WxL, WxL domain surface cell wall-binding	NA|213aa|up_0|NC_018221.1_1974526_1975165_-	COG4932, COG4932, Predicted outer membrane protein [Cell envelope biogenesis, outer membrane]	NA|60aa|down_0|NC_018221.1_1978152_1978332_-	NA	NA|388aa|down_1|NC_018221.1_1978932_1980095_+	PHA02517, PHA02517, putative transposase OrfB; Reviewed	NA|84aa|down_2|NC_018221.1_1980306_1980558_-	NA	NA|325aa|down_3|NC_018221.1_1980783_1981758_-	cd00542, Ntn_PVA, Penicillin V acylase (PVA), also known as conjugated bile salt acid hydrolase (CBAH), catalyzes the hydrolysis of penicillin V to yield 6-amino penicillanic acid (6-APA), an important key intermediate of semisynthetic penicillins	NA|173aa|down_4|NC_018221.1_1981910_1982429_-	NA	NA|48aa|down_5|NC_018221.1_1982373_1982517_+	cd00569, HTH_Hin_like, Helix-turn-helix domain of Hin and related proteins	NA|58aa|down_6|NC_018221.1_1982621_1982795_+	PHA02517, PHA02517, putative transposase OrfB; Reviewed	NA|84aa|down_7|NC_018221.1_1982817_1983069_+	pfam00665, rve, Integrase core domain	NA|121aa|down_8|NC_018221.1_1983283_1983646_+	pfam06486, DUF1093, Protein of unknown function (DUF1093)	NA|220aa|down_9|NC_018221.1_1984149_1984809_-	cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein
GCF_000281195.1_ASM28119v1	NC_018221	Enterococcus faecalis D32, complete sequence	4	2098379-2098492	4	CRISPRCasFinder	no	csa3	WYL,csa3,cas3,cas9,cas1,cas2,csn2,cas14j,DinG,DEDDh	Type I-A	ACAACGTTCCCTTTGGTCACCTTGTGCTGTTC	32	0	0	NA	NA	NA	1	1	Orphan	WYL,csa3,cas3,cas9,cas1,cas2,csn2,cas14j,DinG,DEDDh	NA,NA	NA|241aa|up_9|NC_018221.1_2089160_2089883_-	cd04254, AAK_UMPK-PyrH-Ec, UMP kinase (UMPK)-Ec, the microbial/chloroplast uridine monophosphate kinase (uridylate kinase) enzyme that catalyzes UMP phosphorylation and plays a key role in pyrimidine nucleotide biosynthesis; regulation of this process is via feed-back control and via gene repression of carbamoyl phosphate synthetase (the first enzyme of the pyrimidine biosynthesis pathway)	NA|294aa|up_8|NC_018221.1_2090143_2091025_-	PRK09377, tsf, elongation factor Ts; Provisional	NA|262aa|up_7|NC_018221.1_2091130_2091916_-	PRK05299, rpsB, 30S ribosomal protein S2; Provisional	NA|146aa|up_6|NC_018221.1_2092099_2092537_-	PRK10562, PRK10562, putative acetyltransferase; Provisional	NA|259aa|up_5|NC_018221.1_2092556_2093333_-	COG0566, SpoU, rRNA methylases [Translation, ribosomal structure and biogenesis]	NA|92aa|up_4|NC_018221.1_2093439_2093715_+	COG1254, AcyP, Acylphosphatases [Energy production and conversion]	NA|311aa|up_3|NC_018221.1_2093881_2094814_+	PRK02463, PRK02463, OxaA-like protein precursor; Provisional	NA|64aa|up_2|NC_018221.1_2094847_2095039_-	PRK07758, PRK07758, hypothetical protein; Provisional	NA|695aa|up_1|NC_018221.1_2095078_2097163_-	PRK01233, glyS, glycyl-tRNA synthetase subunit beta; Validated	NA|303aa|up_0|NC_018221.1_2097164_2098073_-	PRK09348, glyQ, glycyl-tRNA synthetase subunit alpha; Validated	NA|263aa|down_0|NC_018221.1_2098807_2099596_-	TIGR00613, DNA_repair_protein_RecO, DNA repair protein RecO	NA|301aa|down_1|NC_018221.1_2099678_2100581_-	PRK00089, era, GTPase Era; Reviewed	NA|134aa|down_2|NC_018221.1_2100594_2100996_-	cd14265, UDPK_IM_like, Integral membrane undecaprenol kinase and similar enzymes	NA|160aa|down_3|NC_018221.1_2100979_2101459_-	PRK00016, PRK00016, metal-binding heat shock protein; Provisional	NA|733aa|down_4|NC_018221.1_2101458_2103657_-	COG1480, COG1480, Predicted membrane-associated HD superfamily hydrolase [General function prediction only]	NA|341aa|down_5|NC_018221.1_2103685_2104708_-	COG1702, PhoH, Phosphate starvation-inducible protein PhoH, predicted ATPase [Signal transduction mechanisms]	NA|150aa|down_6|NC_018221.1_2104842_2105292_-	pfam09424, YqeY, Yqey-like protein	NA|59aa|down_7|NC_018221.1_2105317_2105494_-	PRK00270, rpsU, 30S ribosomal protein S21; Reviewed	NA|147aa|down_8|NC_018221.1_2105659_2106100_-	cd07153, Fur_like, Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators	NA|286aa|down_9|NC_018221.1_2106198_2107056_+	pfam03618, Kinase-PPPase, Kinase/pyrophosphorylase
GCF_000281195.1_ASM28119v1	NC_018223	Enterococcus faecalis D32 plasmid EFD32pB, complete sequence	1	61454-61656	1,1	CRT,CRISPRCasFinder	no			Orphan	AGTATACCAGTATACTTT,AAAGTATACCAGTATACTTTGTGT	18,24	1	1	61492-61506	NC_018223.1_61445-61459	NA:NA	3,3	3	Orphan	WYL,csa3,cas3,cas9,cas1,cas2,csn2,cas14j,DinG,DEDDh	NA|69aa|up_9|NC_018223.1_53213_53420_+,NA|85aa|up_8|NC_018223.1_53606_53861_-,NA|156aa|up_4|NC_018223.1_57420_57888_+,NA|137aa|up_1|NC_018223.1_60124_60535_-,NA	NA|69aa|up_9|NC_018223.1_53213_53420_+	NA	NA|85aa|up_8|NC_018223.1_53606_53861_-	NA	NA|82aa|up_7|NC_018223.1_54714_54960_-	PRK06531, yajC, preprotein translocase subunit YajC; Validated	NA|409aa|up_6|NC_018223.1_55172_56399_+	COG4584, COG4584, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|252aa|up_5|NC_018223.1_56411_57167_+	PRK09183, PRK09183, transposase/IS protein; Provisional	NA|156aa|up_4|NC_018223.1_57420_57888_+	NA	NA|196aa|up_3|NC_018223.1_57884_58472_+	pfam02517, Abi, CAAX protease self-immunity	NA|439aa|up_2|NC_018223.1_58666_59983_+	cd01700, PolY_Pol_V_umuC, umuC subunit of DNA Polymerase V	NA|137aa|up_1|NC_018223.1_60124_60535_-	NA	NA|274aa|up_0|NC_018223.1_60538_61360_-	COG1192, Soj, ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA
