assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000280315.2_ASM28031v2	NZ_CP007598	Salmonella enterica subsp. enterica serovar Enteritidis str. 77-1427 chromosome, complete genome	1	4565718-4566295	1,1,1	CRISPRCasFinder,CRT,PILER-CR	no	cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3	PD-DExK,cas3,DEDDh,WYL,DinG,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e	Type I-E	CGGTTTATCCCCGCTGGCGCGGGGAACAC,CGGTTTATCCCCGCTGGCGCGGGGAACAC,CGGTTTATCCCCGCTGGCGCGGGGAACAC	29,29,29	0	0	NA	NA	I-E:I-E:I-E	9,9,9	9	TypeI-E	PD-DExK,cas3,DEDDh,WYL,DinG,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e	NA,NA	NA|254aa|up_9|NZ_CP007598.1_4557584_4558346_-	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional	NA|350aa|up_8|NZ_CP007598.1_4558326_4559376_-	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed	NA|160aa|up_7|NZ_CP007598.1_4559372_4559852_-	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed	NA|237aa|up_6|NZ_CP007598.1_4559851_4560562_-	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase	NA|104aa|up_5|NZ_CP007598.1_4560580_4560892_-	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|108aa|up_4|NZ_CP007598.1_4561082_4561406_-	pfam12084, DUF3561, Protein of unknown function (DUF3561)	NA|202aa|up_3|NZ_CP007598.1_4561456_4562062_-	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|480aa|up_2|NZ_CP007598.1_4562048_4563488_-	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|303aa|up_1|NZ_CP007598.1_4563497_4564406_-	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|349aa|up_0|NZ_CP007598.1_4564656_4565703_+	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	cas2|98aa|down_0|NZ_CP007598.1_4566391_4566685_-	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	cas1|307aa|down_1|NZ_CP007598.1_4566684_4567605_-	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas6e|217aa|down_2|NZ_CP007598.1_4567601_4568252_-	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI	cas5|249aa|down_3|NZ_CP007598.1_4568233_4568980_-	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas7|353aa|down_4|NZ_CP007598.1_4568990_4570049_-	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI	cse2gr11|185aa|down_5|NZ_CP007598.1_4570062_4570617_-	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2	cas8e|519aa|down_6|NZ_CP007598.1_4570613_4572170_-	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1	cas3|888aa|down_7|NZ_CP007598.1_4572181_4574845_-	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	NA|318aa|down_8|NZ_CP007598.1_4575288_4576242_+	PRK15379, PRK15379, type III secretion system effector SopD	NA|245aa|down_9|NZ_CP007598.1_4576329_4577064_-	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase
GCF_000280315.2_ASM28031v2	NZ_CP007598	Salmonella enterica subsp. enterica serovar Enteritidis str. 77-1427 chromosome, complete genome	2	4582447-4582964	2,2,2	CRISPRCasFinder,CRT,PILER-CR	no	cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3	PD-DExK,cas3,DEDDh,WYL,DinG,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e	Type I-E	CGGTTTATCCCCGCTGGCGCGGGGAACAC,CGGTTTATCCCCGCTGGCGCGGGGAACAC,GTTTATCCCCGCTGGCGCGGGGAACAC	29,29,27	0	0	NA	NA	I-E:I-E:I-E	8,8,7	8	TypeI-E	PD-DExK,cas3,DEDDh,WYL,DinG,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e	NA,NA	cas7|353aa|up_9|NZ_CP007598.1_4568990_4570049_-	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI	cse2gr11|185aa|up_8|NZ_CP007598.1_4570062_4570617_-	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2	cas8e|519aa|up_7|NZ_CP007598.1_4570613_4572170_-	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1	cas3|888aa|up_6|NZ_CP007598.1_4572181_4574845_-	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	NA|318aa|up_5|NZ_CP007598.1_4575288_4576242_+	PRK15379, PRK15379, type III secretion system effector SopD	NA|245aa|up_4|NZ_CP007598.1_4576329_4577064_-	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	NA|571aa|up_3|NZ_CP007598.1_4577165_4578878_-	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit	NA|600aa|up_2|NZ_CP007598.1_4578877_4580677_-	PRK10953, cysJ, NADPH-dependent assimilatory sulfite reductase flavoprotein subunit	NA|121aa|up_1|NZ_CP007598.1_4581100_4581463_+	cd00470, PTPS, 6-pyruvoyl tetrahydropterin synthase (PTPS)	NA|266aa|up_0|NZ_CP007598.1_4581550_4582348_-	COG1237, COG1237, Metal-dependent hydrolases of the beta-lactamase superfamily II [General function prediction only]	NA|224aa|down_0|NZ_CP007598.1_4583260_4583932_-	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	NA|433aa|down_1|NZ_CP007598.1_4584067_4585366_-	PRK00077, eno, enolase; Provisional	NA|546aa|down_2|NZ_CP007598.1_4585448_4587086_-	PRK05380, pyrG, CTP synthetase; Validated	NA|267aa|down_3|NZ_CP007598.1_4587313_4588114_-	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed	NA|196aa|down_4|NZ_CP007598.1_4588720_4589308_+	PRK15261, PRK15261, fimbrial protein SteA; Provisional	NA|900aa|down_5|NZ_CP007598.1_4589387_4592087_+	PRK15273, PRK15273, fimbrial biogenesis outer membrane usher protein	NA|258aa|down_6|NZ_CP007598.1_4592099_4592873_+	PRK15274, PRK15274, putative periplasmic fimbrial chaperone protein SteC; Provisional	NA|169aa|down_7|NZ_CP007598.1_4592892_4593399_+	PRK15275, PRK15275, putative fimbrial protein SteD; Provisional	NA|157aa|down_8|NZ_CP007598.1_4593413_4593884_+	PRK15276, PRK15276, putative fimbrial subunit SteE; Provisional	NA|179aa|down_9|NZ_CP007598.1_4593880_4594417_+	PRK15260, PRK15260, fimbrial protein SteF; Provisional
GCF_000280315.2_ASM28031v2	NZ_CP007599	Salmonella enterica subsp. enterica serovar Enteritidis str. 77-1427 plasmid pCFSAN000111_01, complete sequence	1	28446-28558	1	CRISPRCasFinder	no			Orphan	GACACACACAATGTCACACAAAAG	24	0	0	NA	NA	NA	2	2	Orphan	PD-DExK,cas3,DEDDh,WYL,DinG,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e	NA|98aa|up_6|NZ_CP007599.1_20674_20968_+,NA|83aa|up_5|NZ_CP007599.1_21179_21428_-,NA|101aa|up_2|NZ_CP007599.1_24381_24684_+,NA|112aa|up_0|NZ_CP007599.1_27955_28291_-,NA|136aa|down_0|NZ_CP007599.1_28636_29044_+,NA|235aa|down_2|NZ_CP007599.1_29811_30516_+,NA|93aa|down_5|NZ_CP007599.1_31621_31900_-,NA|110aa|down_6|NZ_CP007599.1_31957_32287_-,NA|89aa|down_8|NZ_CP007599.1_32957_33224_-	NA|172aa|up_9|NZ_CP007599.1_18964_19480_+	cd17493, toxin_TenpN, type III toxin-antitoxin system toxin TenpN and similar proteins	NA|101aa|up_8|NZ_CP007599.1_19969_20272_+	pfam09907, HigB_toxin, HigB_toxin, RelE-like toxic component of a toxin-antitoxin system	NA|123aa|up_7|NZ_CP007599.1_20277_20646_+	COG5499, COG5499, Predicted transcription regulator containing HTH domain [Transcription]	NA|98aa|up_6|NZ_CP007599.1_20674_20968_+	NA	NA|83aa|up_5|NZ_CP007599.1_21179_21428_-	NA	NA|272aa|up_4|NZ_CP007599.1_22087_22903_+	pfam00589, Phage_integrase, Phage integrase family	NA|220aa|up_3|NZ_CP007599.1_23017_23677_+	PHA02518, PHA02518, ParA-like protein; Provisional	NA|101aa|up_2|NZ_CP007599.1_24381_24684_+	NA	NA|1066aa|up_1|NZ_CP007599.1_24761_27959_-	pfam18821, LPD7, Large polyvalent protein-associated domain 7	NA|112aa|up_0|NZ_CP007599.1_27955_28291_-	NA	NA|136aa|down_0|NZ_CP007599.1_28636_29044_+	NA	NA|254aa|down_1|NZ_CP007599.1_29053_29815_+	cd05386, TraL, transfer origin protein TraL	NA|235aa|down_2|NZ_CP007599.1_29811_30516_+	NA	NA|146aa|down_3|NZ_CP007599.1_30544_30982_-	pfam15919, HicB_lk_antitox, HicB_like antitoxin of bacterial toxin-antitoxin system	NA|61aa|down_4|NZ_CP007599.1_31006_31189_-	pfam07927, HicA_toxin, HicA toxin of bacterial toxin-antitoxin,	NA|93aa|down_5|NZ_CP007599.1_31621_31900_-	NA	NA|110aa|down_6|NZ_CP007599.1_31957_32287_-	NA	NA|81aa|down_7|NZ_CP007599.1_32725_32968_-	TIGR03830, transcriptional_regulator_XRE_family, putative zinc finger/helix-turn-helix protein, YgiT family	NA|89aa|down_8|NZ_CP007599.1_32957_33224_-	NA	NA|75aa|down_9|NZ_CP007599.1_33274_33499_-	cd04702, ASRGL1_like, Metazoan L-Asparaginase type 2
GCF_000280315.2_ASM28031v2	NZ_CP007599	Salmonella enterica subsp. enterica serovar Enteritidis str. 77-1427 plasmid pCFSAN000111_01, complete sequence	2	35418-35526	2	CRISPRCasFinder	no			Orphan	ATTTATGGTCAAAAAGGGACAGATTTATGGT	31	0	0	NA	NA	NA	1	1	Orphan	PD-DExK,cas3,DEDDh,WYL,DinG,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e	NA|235aa|up_9|NZ_CP007599.1_29811_30516_+,NA|93aa|up_6|NZ_CP007599.1_31621_31900_-,NA|110aa|up_5|NZ_CP007599.1_31957_32287_-,NA|89aa|up_3|NZ_CP007599.1_32957_33224_-,NA|75aa|up_1|NZ_CP007599.1_33594_33819_-,NA|108aa|up_0|NZ_CP007599.1_33861_34185_-,NA|78aa|down_3|NZ_CP007599.1_38198_38432_-	NA|235aa|up_9|NZ_CP007599.1_29811_30516_+	NA	NA|146aa|up_8|NZ_CP007599.1_30544_30982_-	pfam15919, HicB_lk_antitox, HicB_like antitoxin of bacterial toxin-antitoxin system	NA|61aa|up_7|NZ_CP007599.1_31006_31189_-	pfam07927, HicA_toxin, HicA toxin of bacterial toxin-antitoxin,	NA|93aa|up_6|NZ_CP007599.1_31621_31900_-	NA	NA|110aa|up_5|NZ_CP007599.1_31957_32287_-	NA	NA|81aa|up_4|NZ_CP007599.1_32725_32968_-	TIGR03830, transcriptional_regulator_XRE_family, putative zinc finger/helix-turn-helix protein, YgiT family	NA|89aa|up_3|NZ_CP007599.1_32957_33224_-	NA	NA|75aa|up_2|NZ_CP007599.1_33274_33499_-	cd04702, ASRGL1_like, Metazoan L-Asparaginase type 2	NA|75aa|up_1|NZ_CP007599.1_33594_33819_-	NA	NA|108aa|up_0|NZ_CP007599.1_33861_34185_-	NA	NA|335aa|down_0|NZ_CP007599.1_35867_36872_+	pfam01051, Rep_3, Initiator Replication protein	NA|113aa|down_1|NZ_CP007599.1_37333_37672_-	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|96aa|down_2|NZ_CP007599.1_37870_38158_+	COG2771, CsgD, DNA-binding HTH domain-containing proteins [Transcription]	NA|78aa|down_3|NZ_CP007599.1_38198_38432_-	NA	NA|214aa|down_4|NZ_CP007599.1_38444_39086_-	pfam07996, T4SS, Type IV secretion system proteins	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA
