assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000279145.1_ASM27914v1	NC_018178	Melioribacter roseus P3M-2, complete sequence	1	166811-167014	1	CRISPRCasFinder	no		cas4,cas2,cas1,cas3,cas5,cas7,cas6,csa3,cas9,DEDDh	Orphan	CTACAGGCTGCCACTCTGCCTCCGTCAGTTGACGGATGAGTTACGCCCGC	50	0	0	NA	NA	NA	1	1	Orphan	cas4,cas2,cas1,cas3,cas5,cas7,cas6,csa3,cas9,DEDDh	NA|294aa|up_7|NC_018178.1_147469_148351_-,NA|271aa|up_2|NC_018178.1_159099_159912_-,NA	NA|365aa|up_9|NC_018178.1_144872_145967_-	cd08023, GH16_laminarinase_like, Laminarinase, member of the glycosyl hydrolase family 16	NA|457aa|up_8|NC_018178.1_145963_147334_-	COG2211, MelB, Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]	NA|294aa|up_7|NC_018178.1_147469_148351_-	NA	NA|499aa|up_6|NC_018178.1_148352_149849_-	pfam02055, Glyco_hydro_30, Glycosyl hydrolase family 30 TIM-barrel domain	NA|1379aa|up_5|NC_018178.1_149970_154107_-	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|406aa|up_4|NC_018178.1_154339_155557_-	pfam18854, baeRF_family10, Bacterial archaeo-eukaryotic release factor family 10	NA|1058aa|up_3|NC_018178.1_155929_159103_-	cd17921, DEXHc_Ski2, DEXH-box helicase domain of DEAD-like helicase Ski2 family proteins	NA|271aa|up_2|NC_018178.1_159099_159912_-	NA	NA|870aa|up_1|NC_018178.1_159984_162594_-	pfam02384, N6_Mtase, N-6 DNA Methylase	NA|841aa|up_0|NC_018178.1_162821_165344_-	COG4096, HsdR, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]	NA|102aa|down_0|NC_018178.1_167109_167415_+	pfam13398, Peptidase_M50B, Peptidase M50B-like	NA|136aa|down_1|NC_018178.1_167447_167855_+	pfam13398, Peptidase_M50B, Peptidase M50B-like	NA|436aa|down_2|NC_018178.1_167776_169084_-	cd17482, MFS_YxiO_like, Bacillus subtilis YxiO, Listeria monocytogenes BtlA, and similar transporters of the Major Facilitator Superfamily	NA|169aa|down_3|NC_018178.1_169055_169562_-	TIGR01951, nusB, transcription antitermination factor NusB	NA|343aa|down_4|NC_018178.1_169639_170668_-	cd06259, YdcF-like, YdcF-like	NA|266aa|down_5|NC_018178.1_170664_171462_-	COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]	NA|220aa|down_6|NC_018178.1_171588_172248_-	pfam03544, TonB_C, Gram-negative bacterial TonB protein C-terminal	NA|131aa|down_7|NC_018178.1_172340_172733_-	COG5652, COG5652, Predicted integral membrane protein [Function unknown]	NA|523aa|down_8|NC_018178.1_172722_174291_-	cd01171, YXKO-related, B	NA|477aa|down_9|NC_018178.1_174295_175726_-	PRK05777, PRK05777, NADH-quinone oxidoreductase subunit NuoN
GCF_000279145.1_ASM27914v1	NC_018178	Melioribacter roseus P3M-2, complete sequence	2	929685-930781	2,1,1	CRISPRCasFinder,CRT,PILER-CR	no	cas2,cas1,cas4,cas3,cas5,cas7,cas6	cas4,cas2,cas1,cas3,cas5,cas7,cas6,csa3,cas9,DEDDh	Unclear	ATTTCAATTCTACAATAGTACGATTAAGAC,ATTTCAATTCTACAATAGTACGATTAAGAC,ATTTCAATTCTACAATAGTACGATTAAGAC	30,30,30	0	0	NA	NA	I-A,II-B,III-A:I-A,II-B,III-A:I-A,II-B,III-A	16,16,15	16	Unclear	cas4,cas2,cas1,cas3,cas5,cas7,cas6,csa3,cas9,DEDDh	NA|89aa|up_7|NC_018178.1_923825_924092_-,NA|190aa|up_6|NC_018178.1_924101_924671_-,NA|88aa|up_5|NC_018178.1_924735_924999_-,NA|164aa|up_4|NC_018178.1_925440_925932_+,NA|160aa|down_7|NC_018178.1_938333_938813_-	NA|69aa|up_9|NC_018178.1_923314_923521_-	pfam04945, YHS, YHS domain	NA|78aa|up_8|NC_018178.1_923587_923821_-	COG3350, COG3350, Uncharacterized conserved protein [Function unknown]	NA|89aa|up_7|NC_018178.1_923825_924092_-	NA	NA|190aa|up_6|NC_018178.1_924101_924671_-	NA	NA|88aa|up_5|NC_018178.1_924735_924999_-	NA	NA|164aa|up_4|NC_018178.1_925440_925932_+	NA	NA|84aa|up_3|NC_018178.1_925972_926224_-	pfam01910, Thiamine_BP, Thiamine-binding protein	NA|223aa|up_2|NC_018178.1_926208_926877_-	PRK08317, PRK08317, hypothetical protein; Provisional	NA|80aa|up_1|NC_018178.1_926932_927172_-	pfam04026, SpoVG, SpoVG	NA|123aa|up_0|NC_018178.1_928224_928593_+	pfam13173, AAA_14, AAA domain	cas2|88aa|down_0|NC_018178.1_930930_931194_-	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	cas1|363aa|down_1|NC_018178.1_931195_932284_-	TIGR03641, cas1_HMARI, CRISPR-associated endonuclease Cas1, subtype I-B/HMARI/TNEAP	NA|122aa|down_2|NC_018178.1_932421_932787_-	TIGR02436, S23_ribosomal_protein, four helix bundle protein	cas4|165aa|down_3|NC_018178.1_932898_933393_-	pfam01930, Cas_Cas4, Domain of unknown function DUF83	cas3|876aa|down_4|NC_018178.1_933465_936093_-	cd09639, Cas3_I, CRISPR/Cas system-associated protein Cas3	cas5|276aa|down_5|NC_018178.1_936079_936907_-	TIGR01895, conserved_hypothetical_protein, CRISPR-associated protein Cas5, subtype I-B/TNEAP	cas7|477aa|down_6|NC_018178.1_936887_938318_-	pfam01905, DevR, CRISPR-associated negative auto-regulator DevR/Csa2	NA|160aa|down_7|NC_018178.1_938333_938813_-	NA	NA|387aa|down_8|NC_018178.1_938815_939976_-	TIGR01908, Uncharacterized_protein_aq_372, CRISPR-associated protein Cas8b1/Cst1, subtype I-B/TNEAP	cas6|236aa|down_9|NC_018178.1_939972_940680_-	COG1583, COG1583, CRISPR system related protein, RAMP superfamily [Defense    mechanisms]
GCF_000279145.1_ASM27914v1	NC_018178	Melioribacter roseus P3M-2, complete sequence	3	1354991-1356548	3,2	CRISPRCasFinder,PILER-CR	no	cas2,cas1,cas9	cas4,cas2,cas1,cas3,cas5,cas7,cas6,csa3,cas9,DEDDh	 or Type II-C?,Type II-C,Type II-A,Type II-B, Type II-B	GTTGTGATTTGCTTTCAAATTTTTTCTTTGACATATTAAAACCAAG,GTTGTGATTTGCTTTCAAATTTTTTCTTTGACATATTAAAACCAAG	46,46	2	2	1355563-1355592|1355564-1355593	NC_018178.1_188770-188741|NC_018178.1_188770-188741	NA:NA	20,18	20	orTypeII-C?,TypeII-C,TypeII-A,TypeII-B,TypeII-B	cas4,cas2,cas1,cas3,cas5,cas7,cas6,csa3,cas9,DEDDh	NA,NA|102aa|down_3|NC_018178.1_1360868_1361174_-,cas9|625aa|down_4|NC_018178.1_1361184_1363059_-	NA|488aa|up_9|NC_018178.1_1344188_1345652_+	COG3980, spsG, Spore coat polysaccharide biosynthesis protein, predicted glycosyltransferase [Cell envelope biogenesis, outer membrane]	NA|350aa|up_8|NC_018178.1_1345641_1346691_+	TIGR03586, PseI, pseudaminic acid synthase	NA|98aa|up_7|NC_018178.1_1346745_1347039_+	pfam18765, Polbeta, Polymerase beta, Nucleotidyltransferase	NA|174aa|up_6|NC_018178.1_1347035_1347557_+	pfam01934, DUF86, Protein of unknown function DUF86	NA|82aa|up_5|NC_018178.1_1348385_1348631_-	pfam09723, Zn-ribbon_8, Zinc ribbon domain	NA|220aa|up_4|NC_018178.1_1348643_1349303_-	COG0179, MhpD, 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) [Secondary metabolites biosynthesis, transport, and catabolism]	NA|497aa|up_3|NC_018178.1_1349345_1350836_-	pfam00144, Beta-lactamase, Beta-lactamase	NA|155aa|up_2|NC_018178.1_1350916_1351381_-	cd00865, PEBP_bact_arch, PhosphatidylEthanolamine-Binding Protein (PEBP) domain present in bacteria and archaea	NA|250aa|up_1|NC_018178.1_1351446_1352196_-	pfam13189, Cytidylate_kin2, Cytidylate kinase-like family	NA|347aa|up_0|NC_018178.1_1352346_1353387_-	COG1506, DAP2, Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism]	cas2|110aa|down_0|NC_018178.1_1356665_1356995_-	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms]	cas1|330aa|down_1|NC_018178.1_1357087_1358077_-	TIGR03639, cas1_NMENI, CRISPR-associated endonuclease Cas1, subtype II/NMENI	cas9|925aa|down_2|NC_018178.1_1358085_1360860_-	pfam18541, RuvC_III, RuvC endonuclease subdomain 3	NA|102aa|down_3|NC_018178.1_1360868_1361174_-	NA	cas9|625aa|down_4|NC_018178.1_1361184_1363059_-	NA	NA|115aa|down_5|NC_018178.1_1363697_1364042_+	pfam06155, DUF971, Protein of unknown function (DUF971)	NA|481aa|down_6|NC_018178.1_1364035_1365478_-	PLN02880, PLN02880, tyrosine decarboxylase	NA|280aa|down_7|NC_018178.1_1365479_1366319_-	COG1506, DAP2, Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism]	NA|564aa|down_8|NC_018178.1_1366578_1368270_+	PRK09194, PRK09194, prolyl-tRNA synthetase; Provisional	NA|226aa|down_9|NC_018178.1_1368330_1369008_+	cd19918, RsmI_like, uncharacterized subfamily of the tetrapyrrole methylase family similar to Ribosomal RNA small subunit methyltransferase I (RsmI)
GCF_000279145.1_ASM27914v1	NC_018178	Melioribacter roseus P3M-2, complete sequence	4	2661872-2663357	3,4,2	PILER-CR,CRISPRCasFinder,CRT	no		cas4,cas2,cas1,cas3,cas5,cas7,cas6,csa3,cas9,DEDDh	Orphan	ATTTCAATTCTACAATAGTGCGATTAAAAC,GTTTTAATCGCACTATTGTAGAATTGAAAT,GTTTTAATCGCACTATTGTAGAATTGAAAT	30,30,30	0	0	NA	NA	I-A,II-B,III-A:I-A,II-B,III-A:I-A,II-B,III-A	21,21,22	22	Orphan	cas4,cas2,cas1,cas3,cas5,cas7,cas6,csa3,cas9,DEDDh	NA,NA|259aa|down_2|NC_018178.1_2665544_2666321_+,NA|194aa|down_4|NC_018178.1_2666848_2667430_+	NA|447aa|up_9|NC_018178.1_2649497_2650838_-	cd05803, PGM_like4, This PGM-like (phosphoglucomutase-like) domain is located C-terminal to a mannose-1-phosphate guanyltransferase domain in a protein of unknown function that is found in both prokaryotes and eukaryotes	NA|534aa|up_8|NC_018178.1_2650977_2652579_+	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|230aa|up_7|NC_018178.1_2652626_2653316_+	COG0177, Nth, Predicted EndoIII-related endonuclease [DNA replication, recombination, and repair]	NA|693aa|up_6|NC_018178.1_2654147_2656226_+	COG0022, AcoB, Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, beta subunit [Energy production and conversion]	NA|521aa|up_5|NC_018178.1_2656238_2657801_+	PRK11855, PRK11855, dihydrolipoamide acetyltransferase; Reviewed	NA|302aa|up_4|NC_018178.1_2657820_2658726_+	PRK05481, PRK05481, lipoyl synthase; Provisional	NA|97aa|up_3|NC_018178.1_2659004_2659295_+	COG1146, COG1146, Ferredoxin [Energy production and conversion]	NA|358aa|up_2|NC_018178.1_2659291_2660365_+	PRK07119, PRK07119, 2-ketoisovalerate ferredoxin reductase; Validated	NA|261aa|up_1|NC_018178.1_2660403_2661186_+	cd03375, TPP_OGFOR, Thiamine pyrophosphate (TPP family), 2-oxoglutarate ferredoxin oxidoreductase (OGFOR) subfamily, TPP-binding module; OGFOR catalyzes the oxidative decarboxylation of 2-oxo-acids, with ferredoxin acting as an electron acceptor	NA|188aa|up_0|NC_018178.1_2661185_2661749_+	pfam01558, POR, Pyruvate ferredoxin/flavodoxin oxidoreductase	NA|150aa|down_0|NC_018178.1_2664644_2665094_+	cd07814, SRPBCC_CalC_Aha1-like, Putative hydrophobic ligand-binding SRPBCC domain of Micromonospora echinospora CalC, human Aha1, and related proteins	NA|107aa|down_1|NC_018178.1_2665093_2665414_+	COG3795, COG3795, Uncharacterized protein conserved in bacteria [Function unknown]	NA|259aa|down_2|NC_018178.1_2665544_2666321_+	NA	NA|140aa|down_3|NC_018178.1_2666347_2666767_+	PRK00567, mscL, large-conductance mechanosensitive channel protein MscL	NA|194aa|down_4|NC_018178.1_2666848_2667430_+	NA	NA|554aa|down_5|NC_018178.1_2667443_2669105_+	PRK05347, PRK05347, glutaminyl-tRNA synthetase; Provisional	NA|483aa|down_6|NC_018178.1_2669156_2670605_-	PRK01406, gltX, glutamyl-tRNA synthetase; Reviewed	NA|772aa|down_7|NC_018178.1_2670636_2672952_-	cd17546, REC_hyHK_CKI1_RcsC-like, phosphoacceptor receiver (REC) domain of hybrid sensor histidine kinases/response regulators similar to Arabidopsis thaliana CKI1 and Escherichia coli RcsC	NA|714aa|down_8|NC_018178.1_2673022_2675164_-	pfam00930, DPPIV_N, Dipeptidyl peptidase IV (DPP IV) N-terminal region	NA|203aa|down_9|NC_018178.1_2675218_2675827_-	PRK00277, clpP, ATP-dependent Clp protease proteolytic subunit; Reviewed
