assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000277405.1_ASM27740v1	NC_017741	Helicobacter pylori Shi112, complete genome	1	55287-55436	1	CRISPRCasFinder	no		c2c9_V-U4,cas14j,cas3,cas2,DEDDh	Orphan	AGATAAAGACAATCTAACTAAAG	23	1	1	55394-55412	NC_017741.1_54418-54436	NA	3	3	Orphan	c2c9_V-U4,cas14j,cas3,cas2,DEDDh	NA|70aa|up_1|NC_017741.1_53628_53838_+,NA|188aa|down_0|NC_017741.1_58476_59040_+,NA|117aa|down_3|NC_017741.1_61516_61867_+	NA|382aa|up_9|NC_017741.1_39960_41106_+	TIGR01472, GDP-mannose_46_dehydratase_1, GDP-mannose 4,6-dehydratase	NA|311aa|up_8|NC_017741.1_41098_42031_+	cd05239, GDP_FS_SDR_e, GDP-fucose synthetase, extended (e) SDRs	NA|333aa|up_7|NC_017741.1_42308_43307_-	TIGR02124, Hydrogenase_expression/formation_protein_HypE, hydrogenase expression/formation protein HypE	NA|770aa|up_6|NC_017741.1_43309_45619_-	TIGR00143, Carbamoyltransferase_HypF, [NiFe] hydrogenase maturation protein HypF	NA|331aa|up_5|NC_017741.1_45558_46551_-	COG2957, COG2957, Peptidylarginine deiminase and related enzymes [Amino acid transport and metabolism]	NA|233aa|up_4|NC_017741.1_46602_47301_-	pfam01555, N6_N4_Mtase, DNA methylase	NA|500aa|up_3|NC_017741.1_48217_49717_-	TIGR02121, Osmoregulated_proline_transporter, sodium/proline symporter	NA|1186aa|up_2|NC_017741.1_49743_53301_-	cd07125, ALDH_PutA-P5CDH, Delta(1)-pyrroline-5-carboxylate dehydrogenase, PutA	NA|70aa|up_1|NC_017741.1_53628_53838_+	NA	NA|276aa|up_0|NC_017741.1_54377_55205_+	TIGR04211, hypothetical_protein, SH3 domain protein	NA|188aa|down_0|NC_017741.1_58476_59040_+	NA	NA|87aa|down_1|NC_017741.1_59055_59316_+	pfam06013, WXG100, Proteins of 100 residues with WXG	NA|142aa|down_2|NC_017741.1_61089_61515_+	pfam09346, SMI1_KNR4, SMI1 / KNR4 family (SUKH-1)	NA|117aa|down_3|NC_017741.1_61516_61867_+	NA	NA|266aa|down_4|NC_017741.1_64359_65157_-	COG0829, UreH, Urease accessory protein UreH [Posttranslational modification, protein turnover, chaperones]	NA|200aa|down_5|NC_017741.1_65156_65756_-	TIGR00101, Urease_accessory_protein_UreG, urease accessory protein UreG	NA|239aa|down_6|NC_017741.1_65784_66501_-	COG0830, UreF, Urease accessory protein UreF [Posttranslational modification, protein turnover, chaperones]	NA|171aa|down_7|NC_017741.1_66556_67069_-	PRK13261, ureE, urease accessory protein UreE; Provisional	NA|196aa|down_8|NC_017741.1_67070_67658_-	cd13404, UreI_AmiS_like, UreI/AmiS family, proton-gated urea channel and putative amide transporters	NA|570aa|down_9|NC_017741.1_67850_69560_-	PRK13985, ureB, urease subunit alpha
GCF_000277405.1_ASM27740v1	NC_017741	Helicobacter pylori Shi112, complete genome	2	55518-55603	2	CRISPRCasFinder	no		c2c9_V-U4,cas14j,cas3,cas2,DEDDh	Orphan	AGATAAAGACAATCTAACTAAAG	23	0	0	NA	NA	NA	1	1	Orphan	c2c9_V-U4,cas14j,cas3,cas2,DEDDh	NA|70aa|up_1|NC_017741.1_53628_53838_+,NA|188aa|down_0|NC_017741.1_58476_59040_+,NA|117aa|down_3|NC_017741.1_61516_61867_+	NA|382aa|up_9|NC_017741.1_39960_41106_+	TIGR01472, GDP-mannose_46_dehydratase_1, GDP-mannose 4,6-dehydratase	NA|311aa|up_8|NC_017741.1_41098_42031_+	cd05239, GDP_FS_SDR_e, GDP-fucose synthetase, extended (e) SDRs	NA|333aa|up_7|NC_017741.1_42308_43307_-	TIGR02124, Hydrogenase_expression/formation_protein_HypE, hydrogenase expression/formation protein HypE	NA|770aa|up_6|NC_017741.1_43309_45619_-	TIGR00143, Carbamoyltransferase_HypF, [NiFe] hydrogenase maturation protein HypF	NA|331aa|up_5|NC_017741.1_45558_46551_-	COG2957, COG2957, Peptidylarginine deiminase and related enzymes [Amino acid transport and metabolism]	NA|233aa|up_4|NC_017741.1_46602_47301_-	pfam01555, N6_N4_Mtase, DNA methylase	NA|500aa|up_3|NC_017741.1_48217_49717_-	TIGR02121, Osmoregulated_proline_transporter, sodium/proline symporter	NA|1186aa|up_2|NC_017741.1_49743_53301_-	cd07125, ALDH_PutA-P5CDH, Delta(1)-pyrroline-5-carboxylate dehydrogenase, PutA	NA|70aa|up_1|NC_017741.1_53628_53838_+	NA	NA|276aa|up_0|NC_017741.1_54377_55205_+	TIGR04211, hypothetical_protein, SH3 domain protein	NA|188aa|down_0|NC_017741.1_58476_59040_+	NA	NA|87aa|down_1|NC_017741.1_59055_59316_+	pfam06013, WXG100, Proteins of 100 residues with WXG	NA|142aa|down_2|NC_017741.1_61089_61515_+	pfam09346, SMI1_KNR4, SMI1 / KNR4 family (SUKH-1)	NA|117aa|down_3|NC_017741.1_61516_61867_+	NA	NA|266aa|down_4|NC_017741.1_64359_65157_-	COG0829, UreH, Urease accessory protein UreH [Posttranslational modification, protein turnover, chaperones]	NA|200aa|down_5|NC_017741.1_65156_65756_-	TIGR00101, Urease_accessory_protein_UreG, urease accessory protein UreG	NA|239aa|down_6|NC_017741.1_65784_66501_-	COG0830, UreF, Urease accessory protein UreF [Posttranslational modification, protein turnover, chaperones]	NA|171aa|down_7|NC_017741.1_66556_67069_-	PRK13261, ureE, urease accessory protein UreE; Provisional	NA|196aa|down_8|NC_017741.1_67070_67658_-	cd13404, UreI_AmiS_like, UreI/AmiS family, proton-gated urea channel and putative amide transporters	NA|570aa|down_9|NC_017741.1_67850_69560_-	PRK13985, ureB, urease subunit alpha
GCF_000277405.1_ASM27740v1	NC_017741	Helicobacter pylori Shi112, complete genome	3	396410-396522	3	CRISPRCasFinder	no		c2c9_V-U4,cas14j,cas3,cas2,DEDDh	Orphan	GAGAGGCTCTCTAGCGTTACTGAAGAAAT	29	0	0	NA	NA	NA	1	1	Orphan	c2c9_V-U4,cas14j,cas3,cas2,DEDDh	NA,NA	NA|298aa|up_9|NC_017741.1_388200_389094_+	COG3980, spsG, Spore coat polysaccharide biosynthesis protein, predicted glycosyltransferase [Cell envelope biogenesis, outer membrane]	NA|181aa|up_8|NC_017741.1_389090_389633_+	TIGR03585, PseH, UDP-4-amino-4,6-dideoxy-N-acetyl-beta-L-altrosamine N-acetyltransferase	NA|313aa|up_7|NC_017741.1_389565_390504_-	COG1663, LpxK, Tetraacyldisaccharide-1-P 4'-kinase [Cell envelope biogenesis, outer membrane]	NA|261aa|up_6|NC_017741.1_390500_391283_-	PRK13980, PRK13980, NAD synthetase; Provisional	NA|331aa|up_5|NC_017741.1_391529_392522_+	PRK05479, PRK05479, ketol-acid reductoisomerase; Provisional	NA|269aa|up_4|NC_017741.1_392540_393347_+	COG2894, MinD, Septum formation inhibitor-activating ATPase [Cell division and chromosome partitioning]	NA|78aa|up_3|NC_017741.1_393343_393577_+	TIGR01215, Cell_division_topological_specificity_factor, cell division topological specificity factor MinE	NA|267aa|up_2|NC_017741.1_393588_394389_+	TIGR00732, Protein_smf, DNA protecting protein DprA	NA|135aa|up_1|NC_017741.1_394385_394790_+	PRK00109, PRK00109, Holliday junction resolvase RuvX	NA|113aa|up_0|NC_017741.1_395691_396030_+	PRK07213, PRK07213, chlorohydrolase; Provisional	NA|294aa|down_0|NC_017741.1_396730_397612_-	COG0564, RluA, Pseudouridylate synthases, 23S RNA-specific [Translation, ribosomal structure and biogenesis]	NA|517aa|down_1|NC_017741.1_397611_399162_-	TIGR00644, recJ, single-stranded-DNA-specific exonuclease RecJ	NA|539aa|down_2|NC_017741.1_399171_400788_-	PRK05380, pyrG, CTP synthetase; Validated	NA|221aa|down_3|NC_017741.1_401046_401709_+	cd03392, PAP2_like_2, PAP2_like_2 proteins	NA|568aa|down_4|NC_017741.1_401752_403456_+	TIGR00206, Flagellar_M-ring_protein, flagellar basal-body M-ring protein/flagellar hook-basal body protein (fliF)	NA|344aa|down_5|NC_017741.1_403474_404506_+	TIGR00207, Flagellar_motor_switch_protein_FliG, flagellar motor switch protein FliG	NA|259aa|down_6|NC_017741.1_404492_405269_+	PRK06669, fliH, flagellar assembly protein H; Validated	NA|619aa|down_7|NC_017741.1_405265_407122_+	TIGR00204, 1-deoxy-D-xylulose-5-phosphate_synthase, 1-deoxy-D-xylulose-5-phosphate synthase	NA|603aa|down_8|NC_017741.1_407118_408927_+	PRK05433, PRK05433, GTP-binding protein LepA; Provisional	NA|310aa|down_9|NC_017741.1_408935_409865_+	TIGR00675, Modification_methylase, DNA-methyltransferase (dcm)
GCF_000277405.1_ASM27740v1	NC_017741	Helicobacter pylori Shi112, complete genome	4	890404-890684	1	PILER-CR	no		c2c9_V-U4,cas14j,cas3,cas2,DEDDh	Orphan	GAGAAAAAAGAATGCGAGAAATTACTCACGCCTGAAGCGAAAAAACTTTTAGAAGAAGAAGC	62	1	1	890583-890638	NC_017741.1_891533-891588	NA	2	2	Orphan	c2c9_V-U4,cas14j,cas3,cas2,DEDDh	NA|307aa|up_9|NC_017741.1_876587_877508_-,NA|377aa|up_8|NC_017741.1_877522_878653_-,NA|115aa|up_7|NC_017741.1_879075_879420_+,NA|127aa|up_6|NC_017741.1_880387_880768_-,NA|216aa|up_3|NC_017741.1_883367_884015_-,NA|536aa|up_1|NC_017741.1_885051_886659_+,NA|116aa|down_5|NC_017741.1_900130_900478_-	NA|307aa|up_9|NC_017741.1_876587_877508_-	NA	NA|377aa|up_8|NC_017741.1_877522_878653_-	NA	NA|115aa|up_7|NC_017741.1_879075_879420_+	NA	NA|127aa|up_6|NC_017741.1_880387_880768_-	NA	NA|200aa|up_5|NC_017741.1_881713_882313_+	pfam16707, CagS, Cag pathogenicity island protein S of Helicobacter pylori	NA|281aa|up_4|NC_017741.1_882509_883352_-	pfam13117, Cag12, Cag pathogenicity island protein Cag12	NA|216aa|up_3|NC_017741.1_883367_884015_-	NA	NA|253aa|up_2|NC_017741.1_884288_885047_+	COG3736, VirB8, Type IV secretory pathway, component VirB8 [Intracellular trafficking and secretion]	NA|536aa|up_1|NC_017741.1_885051_886659_+	NA	NA|523aa|up_0|NC_017741.1_886711_888280_+	COG3504, VirB9, Type IV secretory pathway, VirB9 components [Intracellular trafficking and secretion]	NA|200aa|down_0|NC_017741.1_893974_894574_+	pfam09053, CagZ, CagZ	NA|331aa|down_1|NC_017741.1_894578_895571_+	TIGR02788, conjugal_transfer_protein, P-type DNA transfer ATPase VirB11	NA|749aa|down_2|NC_017741.1_895579_897826_+	COG3505, VirD4, Type IV secretory pathway, VirD4 components [Intracellular trafficking and secretion]	NA|170aa|down_3|NC_017741.1_897938_898448_-	pfam16494, Na_Ca_ex_C, C-terminal extension of sodium/calcium exchanger domain	NA|482aa|down_4|NC_017741.1_898457_899903_-	TIGR00414, Serine--tRNA_ligase, seryl-tRNA synthetase	NA|116aa|down_5|NC_017741.1_900130_900478_-	NA	NA|277aa|down_6|NC_017741.1_900708_901539_+	COG0790, COG0790, FOG: TPR repeat, SEL1 subfamily [General function prediction only]	NA|331aa|down_7|NC_017741.1_901608_902601_-	COG3034, COG3034, Uncharacterized protein conserved in bacteria [Function unknown]	NA|303aa|down_8|NC_017741.1_902597_903506_-	COG1159, Era, GTPase [General function prediction only]	NA|444aa|down_9|NC_017741.1_903502_904834_-	PRK05201, hslU, ATP-dependent protease ATPase subunit HslU
GCF_000277405.1_ASM27740v1	NC_017741	Helicobacter pylori Shi112, complete genome	5	977541-977736	2,1	PILER-CR,CRT	no		c2c9_V-U4,cas14j,cas3,cas2,DEDDh	Orphan	TTCAATCAAGGGACTTATAACTTTA,TTCAATCAAGGGACTTATAACTTTA	25,25	0	0	NA	NA	I-B:I-B	3,3	3	Orphan	c2c9_V-U4,cas14j,cas3,cas2,DEDDh	NA,NA|220aa|down_9|NC_017741.1_990407_991067_+	NA|383aa|up_9|NC_017741.1_958997_960146_+	COG0827, COG0827, Adenine-specific DNA methylase [DNA replication, recombination, and repair]	NA|677aa|up_8|NC_017741.1_960139_962170_+	COG0210, UvrD, Superfamily I DNA and RNA helicases [DNA replication, recombination, and repair]	NA|516aa|up_7|NC_017741.1_962983_964531_+	pfam01856, HP_OMP, Helicobacter outer membrane protein	NA|528aa|up_6|NC_017741.1_964552_966136_+	pfam01856, HP_OMP, Helicobacter outer membrane protein	NA|513aa|up_5|NC_017741.1_966672_968211_-	pfam02521, HP_OMP_2, Putative outer membrane protein	NA|563aa|up_4|NC_017741.1_968447_970136_-	pfam00593, TonB_dep_Rec, TonB dependent receptor	NA|144aa|up_3|NC_017741.1_971062_971494_-	pfam01300, Sua5_yciO_yrdC, Telomere recombination	NA|1086aa|up_2|NC_017741.1_971498_974756_-	PRK05294, carB, carbamoyl-phosphate synthase large subunit	NA|231aa|up_1|NC_017741.1_974850_975543_-	cd10432, BI-1-like_bacterial, Bacterial BAX inhibitor (BI)-1/YccA-like proteins	NA|332aa|up_0|NC_017741.1_975686_976682_+	TIGR01534, Glyceraldehyde-3-phosphate_dehydrogenase, glyceraldehyde-3-phosphate dehydrogenase, type I	NA|2064aa|down_0|NC_017741.1_977747_983939_+	COG5651, COG5651, PPE-repeat proteins [Cell motility and secretion]	NA|366aa|down_1|NC_017741.1_983991_985089_+	pfam01856, HP_OMP, Helicobacter outer membrane protein	NA|69aa|down_2|NC_017741.1_985146_985353_-	TIGR00013, Probable_tautomerase_K2, 4-oxalocrotonate tautomerase family enzyme	NA|194aa|down_3|NC_017741.1_985498_986080_+	TIGR00615, Recombination_protein_RecR, recombination protein RecR	NA|382aa|down_4|NC_017741.1_986076_987222_+	TIGR00094, tRNA_pseudouridine_synthase_D, tRNA pseudouridine synthase, TruD family	NA|327aa|down_5|NC_017741.1_987160_988141_+	PRK02870, PRK02870, heat shock protein HtpX; Provisional	NA|181aa|down_6|NC_017741.1_988141_988684_+	TIGR00063, GTP_cyclohydrolase_1, GTP cyclohydrolase I	NA|304aa|down_7|NC_017741.1_988699_989611_+	COG0142, IspA, Geranylgeranyl pyrophosphate synthase [Coenzyme metabolism]	NA|268aa|down_8|NC_017741.1_989607_990411_+	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional	NA|220aa|down_9|NC_017741.1_990407_991067_+	NA
