assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000276825.1_ASM27682v1	NC_016948	Mycobacterium paraintracellulare, complete sequence	1	1335536-1335618	1	CRISPRCasFinder	no		csa3,DEDDh,cas3,DinG,cas4,WYL,c2c9_V-U4	Orphan	CGCCCGGCGGCGCCGCGCTCGCGATCGGC	29	0	0	NA	NA	NA	1	1	Orphan	csa3,DEDDh,cas3,DinG,cas4,WYL,c2c9_V-U4	NA,NA|191aa|down_1|NC_016948.1_1337538_1338111_+	NA|380aa|up_9|NC_016948.1_1321821_1322961_+	COG1835, COG1835, Predicted acyltransferases [Lipid metabolism]	NA|194aa|up_8|NC_016948.1_1323078_1323660_-	pfam00440, TetR_N, Bacterial regulatory proteins, tetR family	NA|414aa|up_7|NC_016948.1_1323659_1324901_-	COG2124, CypX, Cytochrome P450 [Secondary metabolites biosynthesis, transport, and catabolism]	NA|456aa|up_6|NC_016948.1_1325015_1326383_-	TIGR00387, Glycolate_oxidase_subunit_glcD	NA|279aa|up_5|NC_016948.1_1326448_1327285_+	cd10031, UDG-F5_TTUDGB_like, Uracil DNA glycosylase family 5, includes Thermotoga maritima TTUDGB and similar proteins	NA|377aa|up_4|NC_016948.1_1327281_1328412_+	PRK05868, PRK05868, FAD-binding protein	NA|344aa|up_3|NC_016948.1_1328459_1329491_+	TIGR03558, oxido_grp_1, luciferase family oxidoreductase, group 1	NA|1289aa|up_2|NC_016948.1_1329498_1333365_-	cd01948, EAL, EAL domain	NA|145aa|up_1|NC_016948.1_1333584_1334019_-	cd01277, HINT_subgroup, HINT (histidine triad nucleotide-binding protein) subgroup: Members of this CD belong to the superfamily of histidine triad hydrolases that act on alpha-phosphate of ribonucleotides	NA|463aa|up_0|NC_016948.1_1334102_1335491_+	PRK12470, PRK12470, amidase; Provisional	NA|375aa|down_0|NC_016948.1_1336134_1337259_+	pfam16701, Ad_Cy_reg, Adenylate cyclase regulatory domain	NA|191aa|down_1|NC_016948.1_1337538_1338111_+	NA	NA|589aa|down_2|NC_016948.1_1338154_1339921_-	cd14014, STKc_PknB_like, Catalytic domain of bacterial Serine/Threonine kinases, PknB and similar proteins	NA|639aa|down_3|NC_016948.1_1340099_1342016_-	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]	NA|589aa|down_4|NC_016948.1_1342012_1343779_-	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]	NA|186aa|down_5|NC_016948.1_1343960_1344518_+	pfam12079, DUF3558, Protein of unknown function (DUF3558)	NA|177aa|down_6|NC_016948.1_1344526_1345057_+	pfam12079, DUF3558, Protein of unknown function (DUF3558)	NA|168aa|down_7|NC_016948.1_1345149_1345653_-	COG2062, SixA, Phosphohistidine phosphatase SixA [Signal transduction mechanisms]	NA|384aa|down_8|NC_016948.1_1345815_1346967_+	COG0420, SbcD, DNA repair exonuclease [DNA replication, recombination, and repair]	NA|874aa|down_9|NC_016948.1_1346963_1349585_+	COG4717, COG4717, Uncharacterized conserved protein [Function unknown]
GCF_000276825.1_ASM27682v1	NC_016948	Mycobacterium paraintracellulare, complete sequence	2	4665001-4665098	2	CRISPRCasFinder	no		csa3,DEDDh,cas3,DinG,cas4,WYL,c2c9_V-U4	Orphan	CCGCCGCGCCCGGCTTCGCCGCGCTTGCGATCG	33	0	0	NA	NA	NA	1	1	Orphan	csa3,DEDDh,cas3,DinG,cas4,WYL,c2c9_V-U4	NA|216aa|up_8|NC_016948.1_4655560_4656208_-,NA	NA|340aa|up_9|NC_016948.1_4654533_4655553_-	cd00830, KAS_III, Ketoacyl-acyl carrier protein synthase III (KASIII) initiates the elongation in type II fatty acid synthase systems	NA|216aa|up_8|NC_016948.1_4655560_4656208_-	NA	NA|592aa|up_7|NC_016948.1_4656188_4657964_-	COG0028, IlvB, Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] [Amino acid transport and metabolism / Coenzyme metabolism]	NA|232aa|up_6|NC_016948.1_4658018_4658714_+	cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein	NA|839aa|up_5|NC_016948.1_4658710_4661227_+	COG4591, LolE, ABC-type transport system, involved in lipoprotein release, permease component [Cell envelope biogenesis, outer membrane]	NA|208aa|up_4|NC_016948.1_4661213_4661837_-	pfam08241, Methyltransf_11, Methyltransferase domain	NA|189aa|up_3|NC_016948.1_4661833_4662400_-	pfam14333, DUF4389, Domain of unknown function (DUF4389)	NA|403aa|up_2|NC_016948.1_4662423_4663632_-	COG0654, UbiH, 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]	NA|240aa|up_1|NC_016948.1_4663646_4664366_-	cd20301, cupin_ChrR, anti-ECFsigma factor, ChrR , cupin domain	NA|182aa|up_0|NC_016948.1_4664396_4664942_-	PRK09645, PRK09645, ECF RNA polymerase sigma factor SigL	NA|268aa|down_0|NC_016948.1_4665106_4665910_-	PRK05716, PRK05716, methionine aminopeptidase; Validated	NA|182aa|down_1|NC_016948.1_4665912_4666458_-	PRK00279, adk, adenylate kinase; Reviewed	NA|442aa|down_2|NC_016948.1_4666454_4667780_-	PRK09204, secY, preprotein translocase subunit SecY; Reviewed	NA|308aa|down_3|NC_016948.1_4668026_4668950_+	COG3315, COG3315, O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]	NA|223aa|down_4|NC_016948.1_4668958_4669627_-	pfam13508, Acetyltransf_7, Acetyltransferase (GNAT) domain	NA|454aa|down_5|NC_016948.1_4669636_4670998_-	cd07804, FGGY_XK_like_1, uncharacterized xylulose kinase-like proteins; a subgroup of the FGGY family of carbohydrate kinases	NA|327aa|down_6|NC_016948.1_4671028_4672009_+	cd12171, 2-Hacid_dh_10, Putative D-isomer specific 2-hydroxyacid dehydrogenases	NA|218aa|down_7|NC_016948.1_4672005_4672659_+	PRK05874, PRK05874, L-fuculose-phosphate aldolase; Validated	NA|306aa|down_8|NC_016948.1_4672658_4673576_+	cd16277, metallo-hydrolase-like_MBL-fold, uncharacterized subgroup of the MBL-fold_metallo-hydrolase superfamily; MBL-fold metallo hydrolase domain	NA|411aa|down_9|NC_016948.1_4673585_4674818_-	COG1063, Tdh, Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
GCF_000276825.1_ASM27682v1	NC_016948	Mycobacterium paraintracellulare, complete sequence	3	4875483-4875587	3	CRISPRCasFinder	no		csa3,DEDDh,cas3,DinG,cas4,WYL,c2c9_V-U4	Orphan	GCCCGAGGCATCAGCCCGGCAGCC	24	0	0	NA	NA	NA	1	1	Orphan	csa3,DEDDh,cas3,DinG,cas4,WYL,c2c9_V-U4	NA|177aa|up_9|NC_016948.1_4865426_4865957_-,NA|143aa|up_0|NC_016948.1_4874945_4875374_+,NA|34aa|down_5|NC_016948.1_4880453_4880555_-	NA|177aa|up_9|NC_016948.1_4865426_4865957_-	NA	NA|330aa|up_8|NC_016948.1_4866012_4867002_-	PRK09283, PRK09283, porphobilinogen synthase	NA|552aa|up_7|NC_016948.1_4867047_4868703_-	COG1587, HemD, Uroporphyrinogen-III synthase [Coenzyme metabolism]	NA|316aa|up_6|NC_016948.1_4868726_4869674_-	PRK00072, hemC, porphobilinogen deaminase; Reviewed	NA|460aa|up_5|NC_016948.1_4869687_4871067_-	PRK00045, hemA, glutamyl-tRNA reductase; Reviewed	NA|90aa|up_4|NC_016948.1_4871182_4871452_-	pfam05768, DUF836, Glutaredoxin-like domain (DUF836)	NA|103aa|up_3|NC_016948.1_4871511_4871820_+	pfam06013, WXG100, Proteins of 100 residues with WXG	NA|97aa|up_2|NC_016948.1_4871812_4872103_+	TIGR03930, WXG100_ESAT6, WXG100 family type VII secretion target	NA|854aa|up_1|NC_016948.1_4872107_4874669_+	PHA03247, PHA03247, large tegument protein UL36; Provisional	NA|143aa|up_0|NC_016948.1_4874945_4875374_+	NA	NA|304aa|down_0|NC_016948.1_4875677_4876589_+	TIGR01490, Uncharacterized_protein_Rv3661/MT3761, HAD-superfamily subfamily IB hydrolase, TIGR01490	NA|174aa|down_1|NC_016948.1_4876633_4877155_+	PRK13692, PRK13692, (3R)-hydroxyacyl-ACP dehydratase subunit HadA; Provisional	NA|309aa|down_2|NC_016948.1_4877155_4878082_+	pfam02353, CMAS, Mycolic acid cyclopropane synthetase	NA|363aa|down_3|NC_016948.1_4878148_4879237_-	cd07987, LPLAT_MGAT-like, Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: MGAT-like	NA|376aa|down_4|NC_016948.1_4879218_4880346_-	cd05240, UDP_G4E_3_SDR_e, UDP-glucose 4 epimerase (G4E), subgroup 3, extended (e) SDRs	NA|34aa|down_5|NC_016948.1_4880453_4880555_-	NA	NA|86aa|down_6|NC_016948.1_4880701_4880959_-	TIGR01764, Probable_excisionase, DNA binding domain, excisionase family	NA|292aa|down_7|NC_016948.1_4881098_4881974_-	PRK11880, PRK11880, pyrroline-5-carboxylate reductase; Reviewed	NA|298aa|down_8|NC_016948.1_4882001_4882895_-	pfam13622, 4HBT_3, Thioesterase-like superfamily	NA|281aa|down_9|NC_016948.1_4882920_4883763_-	COG1082, IolE, Sugar phosphate isomerases/epimerases [Carbohydrate transport and metabolism]
GCF_000276825.1_ASM27682v1	NC_016948	Mycobacterium paraintracellulare, complete sequence	4	5050476-5050603	4	CRISPRCasFinder	no		csa3,DEDDh,cas3,DinG,cas4,WYL,c2c9_V-U4	Orphan	ATCGCCGGCGCCGCCAAGAAACCCGGGGCCAAGAA	35	0	0	NA	NA	NA	1	1	Orphan	csa3,DEDDh,cas3,DinG,cas4,WYL,c2c9_V-U4	NA|240aa|up_4|NC_016948.1_5041945_5042665_+,NA|246aa|up_3|NC_016948.1_5042684_5043422_+,NA	NA|214aa|up_9|NC_016948.1_5036653_5037295_-	PRK14142, PRK14142, heat shock protein GrpE; Provisional	NA|620aa|up_8|NC_016948.1_5037291_5039151_-	PRK00290, dnaK, molecular chaperone DnaK; Provisional	NA|198aa|up_7|NC_016948.1_5039469_5040063_+	PRK14971, PRK14971, DNA polymerase III subunit gamma/tau	NA|406aa|up_6|NC_016948.1_5040175_5041393_+	TIGR00836, Ammonium_transporter, ammonium transporter	NA|181aa|up_5|NC_016948.1_5041403_5041946_+	pfam10738, Lpp-LpqN, Probable lipoprotein LpqN	NA|240aa|up_4|NC_016948.1_5041945_5042665_+	NA	NA|246aa|up_3|NC_016948.1_5042684_5043422_+	NA	NA|516aa|up_2|NC_016948.1_5043469_5045017_-	cd17359, MFS_XylE_like, D-xylose-proton symporter and similar transporters of the Major Facilitator Superfamily	NA|195aa|up_1|NC_016948.1_5045483_5046068_+	pfam05086, Dicty_REP, Dictyostelium (Slime Mold) REP protein	NA|559aa|up_0|NC_016948.1_5046164_5047841_+	COG0443, DnaK, Molecular chaperone [Posttranslational modification, protein turnover, chaperones]	NA|435aa|down_0|NC_016948.1_5051092_5052397_+	PRK09265, PRK09265, aminotransferase AlaT; Validated	NA|422aa|down_1|NC_016948.1_5052429_5053695_+	pfam07907, YibE_F, YibE/F-like protein	NA|292aa|down_2|NC_016948.1_5053691_5054567_-	TIGR01207, Glucose-1-phosphate_thymidylyltransferase_1, glucose-1-phosphate thymidylyltransferase, short form	NA|125aa|down_3|NC_016948.1_5054601_5054976_-	pfam12680, SnoaL_2, SnoaL-like domain	NA|252aa|down_4|NC_016948.1_5055005_5055761_-	TIGR03083, TIGR03083, uncharacterized Actinobacterial protein TIGR03083	NA|219aa|down_5|NC_016948.1_5055861_5056518_+	COG2226, UbiE, Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]	NA|441aa|down_6|NC_016948.1_5056757_5058080_+	cd17369, MFS_ShiA_like, Shikimate transporter and similar proteins of the Major Facilitator Superfamily	NA|155aa|down_7|NC_016948.1_5058098_5058563_-	PRK09553, tauD, taurine dioxygenase; Reviewed	NA|442aa|down_8|NC_016948.1_5058674_5060000_-	COG1004, Ugd, Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]	NA|472aa|down_9|NC_016948.1_5060096_5061512_-	PRK12270, kgd, multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit
