The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NC_016948	Mycobacterium paraintracellulare, complete sequence	5501090	0	11109	5501090		Mycobacterium_phage(33.33%)	4	NA	NA
WP_014383560.1|2070_3270_+	DNA polymerase III subunit beta	NA	G8I4E4	Mycobacterium_phage	41.5	8.3e-68
WP_014383561.1|3270_4428_+	DNA replication/repair protein RecF	NA	NA	NA	NA	NA
WP_014383563.1|5247_7281_+	DNA topoisomerase (ATP-hydrolyzing) subunit B	NA	G3M9Z3	Bacillus_virus	43.1	3.5e-135
WP_014383564.1|7332_11109_+	intein-containing DNA gyrase subunit A	NA	U5J9D0	Bacillus_phage	27.2	1.0e-50
>prophage 2
NC_016948	Mycobacterium paraintracellulare, complete sequence	5501090	15123	21287	5501090		Bodo_saltans_virus(25.0%)	7	NA	NA
WP_008262529.1|15123_15672_+	peptidylprolyl isomerase	NA	A0A2H4UTF4	Bodo_saltans_virus	44.6	7.5e-24
WP_080587904.1|15694_16120_-	PH domain-containing protein	NA	NA	NA	NA	NA
WP_003872098.1|16275_16557_-	cell division protein CrgA	NA	NA	NA	NA	NA
WP_008262548.1|16686_17430_+	DUF881 domain-containing protein	NA	NA	NA	NA	NA
WP_008262550.1|17474_18161_+	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	47.4	3.7e-44
WP_009955363.1|18138_20019_-	Stk1 family PASTA domain-containing Ser/Thr kinase	NA	L7RGQ5	Acanthamoeba_polyphaga_moumouvirus	35.1	6.1e-17
WP_041297605.1|20015_21287_-	serine/threonine protein kinase	NA	A0A2R8FF19	Brazilian_cedratvirus	28.9	3.2e-17
>prophage 3
NC_016948	Mycobacterium paraintracellulare, complete sequence	5501090	39270	40089	5501090		Rhodococcus_phage(100.0%)	1	NA	NA
WP_014383580.1|39270_40089_+	C40 family peptidase	NA	A0A1W6DXV0	Rhodococcus_phage	54.3	1.5e-20
>prophage 4
NC_016948	Mycobacterium paraintracellulare, complete sequence	5501090	50038	55003	5501090	tRNA	Staphylococcus_phage(50.0%)	4	NA	NA
WP_014383586.1|50038_52948_+|tRNA	leucine--tRNA ligase	tRNA	A0A2H4PQS0	Staphylococcus_phage	44.9	8.7e-212
WP_014381571.1|52953_53625_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_009954167.1|53683_54187_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_041784731.1|54253_55003_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	34.2	3.3e-22
>prophage 5
NC_016948	Mycobacterium paraintracellulare, complete sequence	5501090	66799	67894	5501090		Stenotrophomonas_phage(100.0%)	1	NA	NA
WP_008262662.1|66799_67894_-	inositol-3-phosphate synthase	NA	A0A0H4IPK5	Stenotrophomonas_phage	42.2	4.6e-73
>prophage 6
NC_016948	Mycobacterium paraintracellulare, complete sequence	5501090	75509	79965	5501090		uncultured_Caudovirales_phage(50.0%)	4	NA	NA
WP_008262692.1|75509_76028_+	single-stranded DNA-binding protein	NA	A0A2H4JEL4	uncultured_Caudovirales_phage	86.1	3.3e-53
WP_003874730.1|76064_76319_+	30S ribosomal protein S18	NA	NA	NA	NA	NA
WP_008262694.1|76349_76808_+	50S ribosomal protein L9	NA	NA	NA	NA	NA
WP_014383600.1|77337_79965_+	replicative DNA helicase	NA	O80281	Escherichia_phage	34.4	1.7e-28
>prophage 7
NC_016948	Mycobacterium paraintracellulare, complete sequence	5501090	84442	89225	5501090		Trichoplusia_ni_ascovirus(66.67%)	6	NA	NA
WP_009952110.1|84442_84646_+	cold-shock protein	NA	Q9AZD3	Lactococcus_phage	52.3	1.7e-13
WP_008262709.1|85000_85630_-	hypothetical protein	NA	NA	NA	NA	NA
WP_009952109.1|85714_86629_-	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_014383604.1|86921_87479_+	nuclear transport factor 2 family protein	NA	NA	NA	NA	NA
WP_014383605.1|87561_88332_-	SDR family oxidoreductase	NA	Q06VL0	Trichoplusia_ni_ascovirus	29.4	2.2e-13
WP_009952105.1|88481_89225_+	SDR family oxidoreductase	NA	Q06VL0	Trichoplusia_ni_ascovirus	26.2	5.4e-09
>prophage 8
NC_016948	Mycobacterium paraintracellulare, complete sequence	5501090	94864	96298	5501090		Pandoravirus(100.0%)	1	NA	NA
WP_009952095.1|94864_96298_+	FAD-binding oxidoreductase	NA	S4VRT3	Pandoravirus	35.3	1.5e-23
>prophage 9
NC_016948	Mycobacterium paraintracellulare, complete sequence	5501090	100492	101077	5501090		uncultured_Caudovirales_phage(100.0%)	1	NA	NA
WP_014378790.1|100492_101077_+	N-acetyltransferase	NA	A0A2H4J136	uncultured_Caudovirales_phage	50.0	1.5e-38
>prophage 10
NC_016948	Mycobacterium paraintracellulare, complete sequence	5501090	125432	126404	5501090		uncultured_Mediterranean_phage(100.0%)	1	NA	NA
WP_009956883.1|125432_126404_+	2-hydroxyacid dehydrogenase	NA	A0A1B1IVB5	uncultured_Mediterranean_phage	29.6	6.0e-16
>prophage 11
NC_016948	Mycobacterium paraintracellulare, complete sequence	5501090	129954	130773	5501090		Lake_Baikal_phage(100.0%)	1	NA	NA
WP_009956878.1|129954_130773_-	CbbQ/NirQ/NorQ/GpvN family protein	NA	A0A2H4N7N3	Lake_Baikal_phage	28.2	5.0e-16
>prophage 12
NC_016948	Mycobacterium paraintracellulare, complete sequence	5501090	134159	140583	5501090		Burkholderia_virus(33.33%)	8	NA	NA
WP_009956874.1|134159_135488_-	MFS transporter	NA	Q6JIH2	Burkholderia_virus	28.9	7.6e-46
WP_014383616.1|135777_136350_-	hemerythrin domain-containing protein	NA	NA	NA	NA	NA
WP_009956872.1|136691_137576_+	class I SAM-dependent methyltransferase	NA	A0A2K9L4K8	Tupanvirus	30.5	1.1e-27
WP_009956871.1|137660_138215_+	hypothetical protein	NA	NA	NA	NA	NA
WP_009956869.1|138275_138629_+	VOC family protein	NA	NA	NA	NA	NA
WP_014710794.1|138634_138901_-	YdeI/OmpD-associated family protein	NA	NA	NA	NA	NA
WP_014383617.1|138897_139791_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014378818.1|139863_140583_+	CoA pyrophosphatase	NA	E5DQL1	Aeromonas_phage	37.1	9.2e-06
>prophage 13
NC_016948	Mycobacterium paraintracellulare, complete sequence	5501090	150593	151922	5501090		Feldmannia_species_virus(100.0%)	1	NA	NA
WP_009956853.1|150593_151922_+	HAMP domain-containing histidine kinase	NA	B5LWN0	Feldmannia_species_virus	26.1	3.9e-10
>prophage 14
NC_016948	Mycobacterium paraintracellulare, complete sequence	5501090	158196	163437	5501090	protease	Mycobacterium_phage(100.0%)	3	NA	NA
WP_014383622.1|158196_159855_+|protease	type VII secretion system ESX-2 serine protease mycosin MycP2	protease	A0A0A7HDD8	Mycobacterium_phage	36.0	1.6e-69
WP_014378832.1|159851_161474_+	type VII secretion protein EccE	NA	NA	NA	NA	NA
WP_170320649.1|161586_163437_+	type VII secretion system ESX-2 AAA family ATPase EccA2	NA	V5UQM2	Mycobacterium_phage	30.1	2.3e-48
>prophage 15
NC_016948	Mycobacterium paraintracellulare, complete sequence	5501090	177933	179148	5501090		uncultured_virus(100.0%)	1	NA	NA
WP_014383626.1|177933_179148_-	DNA polymerase IV	NA	A0A218MNF2	uncultured_virus	32.4	3.6e-18
>prophage 16
NC_016948	Mycobacterium paraintracellulare, complete sequence	5501090	186085	186709	5501090		Bacillus_thuringiensis_phage(100.0%)	1	NA	NA
WP_007771867.1|186085_186709_-	superoxide dismutase	NA	Q56AR7	Bacillus_thuringiensis_phage	44.1	2.7e-38
>prophage 17
NC_016948	Mycobacterium paraintracellulare, complete sequence	5501090	195186	196446	5501090	tRNA	Orpheovirus(100.0%)	1	NA	NA
WP_008262975.1|195186_196446_+|tRNA	serine--tRNA ligase	tRNA	A0A2I2L4X3	Orpheovirus	33.3	1.8e-52
>prophage 18
NC_016948	Mycobacterium paraintracellulare, complete sequence	5501090	209038	210229	5501090		Streptococcus_phage(100.0%)	1	NA	NA
WP_008263005.1|209038_210229_+	UDP-galactopyranose mutase	NA	E4ZFQ1	Streptococcus_phage	43.4	2.0e-85
>prophage 19
NC_016948	Mycobacterium paraintracellulare, complete sequence	5501090	216018	218127	5501090		Macacine_betaherpesvirus(100.0%)	2	NA	NA
WP_008263023.1|216018_217062_+	esterase family protein	NA	A0A2I6B0H1	Macacine_betaherpesvirus	80.8	2.8e-152
WP_008263024.1|217224_218127_+	esterase family protein	NA	A0A2I6B2Q9	Macacine_betaherpesvirus	39.1	4.1e-43
>prophage 20
NC_016948	Mycobacterium paraintracellulare, complete sequence	5501090	253493	254291	5501090		Anomala_cuprea_entomopoxvirus(100.0%)	1	NA	NA
WP_008263074.1|253493_254291_-	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	23.3	5.8e-09
>prophage 21
NC_016948	Mycobacterium paraintracellulare, complete sequence	5501090	263568	266302	5501090	transposase	Staphylococcus_phage(50.0%)	3	NA	NA
WP_142305508.1|263568_264687_+|transposase	IS30 family transposase	transposase	W5R8L2	Staphylococcus_phage	32.6	5.1e-35
WP_008263093.1|264764_265226_-	DUF4334 domain-containing protein	NA	NA	NA	NA	NA
WP_038534802.1|265234_266302_-	histidinol-phosphate transaminase	NA	A0A1X6WGT4	Pacmanvirus	25.4	2.1e-14
>prophage 22
NC_016948	Mycobacterium paraintracellulare, complete sequence	5501090	270388	279129	5501090		Mycobacterium_phage(20.0%)	9	NA	NA
WP_008263106.1|270388_270544_+	hypothetical protein	NA	A0A1C9EH86	Mycobacterium_phage	52.9	7.5e-06
WP_008263107.1|270697_271402_+	two-component system response regulator TcrX	NA	W8CYM9	Bacillus_phage	36.9	1.3e-36
WP_179960111.1|271466_272894_+	HAMP domain-containing protein	NA	Q8QKV7	Ectocarpus_siliculosus_virus	28.1	7.2e-10
WP_008263112.1|272894_273386_-	lipoprotein LpqH	NA	NA	NA	NA	NA
WP_179960097.1|273555_275430_+	MBL fold metallo-hydrolase	NA	A0A2P0VMX1	Tetraselmis_virus	46.1	8.2e-139
WP_014383653.1|275437_276406_-	NADPH:quinone oxidoreductase family protein	NA	NA	NA	NA	NA
WP_014383654.1|276405_277029_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014381635.1|277009_278293_-	acyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_014381636.1|278364_279129_-	glucose 1-dehydrogenase	NA	Q06VL0	Trichoplusia_ni_ascovirus	31.6	2.7e-19
>prophage 23
NC_016948	Mycobacterium paraintracellulare, complete sequence	5501090	284140	285235	5501090		Planktothrix_phage(100.0%)	1	NA	NA
WP_014383658.1|284140_285235_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	35.9	3.7e-22
>prophage 24
NC_016948	Mycobacterium paraintracellulare, complete sequence	5501090	288880	289339	5501090		Pandoravirus(100.0%)	1	NA	NA
WP_008263147.1|288880_289339_+	nucleoside deaminase	NA	S4VYT2	Pandoravirus	37.1	4.5e-06
>prophage 25
NC_016948	Mycobacterium paraintracellulare, complete sequence	5501090	295510	299135	5501090		Mycobacterium_phage(50.0%)	4	NA	NA
WP_008263155.1|295510_295996_-	NINE protein	NA	A0A0A7RVM3	Mycobacterium_phage	43.4	1.0e-08
WP_008263157.1|296123_296510_+	DUF2237 domain-containing protein	NA	NA	NA	NA	NA
WP_014383659.1|296610_297882_+	sulfotransferase	NA	NA	NA	NA	NA
WP_008263162.1|297896_299135_+	MBL fold metallo-hydrolase	NA	A0A1V0SGC6	Hokovirus	28.6	2.4e-25
>prophage 26
NC_016948	Mycobacterium paraintracellulare, complete sequence	5501090	313841	314831	5501090		Cedratvirus(100.0%)	1	NA	NA
WP_009956710.1|313841_314831_+	D-2-hydroxyacid dehydrogenase family protein	NA	A0A1M7XU89	Cedratvirus	32.6	2.2e-26
>prophage 27
NC_016948	Mycobacterium paraintracellulare, complete sequence	5501090	322967	326355	5501090	transposase	Streptomyces_phage(50.0%)	3	NA	NA
WP_014383672.1|322967_323333_-	hypothetical protein	NA	A0A2D1GP18	Streptomyces_phage	47.7	8.5e-16
WP_041785351.1|323492_324743_+	HNH endonuclease	NA	NA	NA	NA	NA
WP_139826619.1|325061_326355_+|transposase	IS3 family transposase	transposase	Q8W6R2	Burkholderia_virus	48.4	2.4e-57
>prophage 28
NC_016948	Mycobacterium paraintracellulare, complete sequence	5501090	335247	336234	5501090		Cowpox_virus(100.0%)	1	NA	NA
WP_008263218.1|335247_336234_-	SDR family NAD(P)-dependent oxidoreductase	NA	G0XSR1	Cowpox_virus	30.3	5.7e-06
>prophage 29
NC_016948	Mycobacterium paraintracellulare, complete sequence	5501090	342469	345639	5501090		Bacteriophage(50.0%)	2	NA	NA
WP_008263232.1|342469_344317_+	DNA polymerase III subunits gamma/tau	NA	A0A1L2BWV7	Bacteriophage	31.6	2.3e-40
WP_020188345.1|344328_345639_-	class I SAM-dependent methyltransferase	NA	A0A2I2L5L3	Orpheovirus	32.2	1.6e-32
>prophage 30
NC_016948	Mycobacterium paraintracellulare, complete sequence	5501090	351871	352864	5501090		Croceibacter_phage(100.0%)	1	NA	NA
WP_008263256.1|351871_352864_+	DEDDh family exonuclease	NA	I6R9X8	Croceibacter_phage	29.5	2.2e-10
>prophage 31
NC_016948	Mycobacterium paraintracellulare, complete sequence	5501090	378744	379209	5501090		Bacillus_phage(100.0%)	1	NA	NA
WP_008263292.1|378744_379209_+	GatB/YqeY domain-containing protein	NA	A0A218KC79	Bacillus_phage	35.6	2.6e-09
>prophage 32
NC_016948	Mycobacterium paraintracellulare, complete sequence	5501090	396925	400130	5501090		Tsukamurella_phage(50.0%)	5	NA	NA
WP_008263340.1|396925_397276_+	WhiB family transcriptional regulator	NA	A0A159B6S6	Tsukamurella_phage	50.0	1.3e-10
WP_041784761.1|397288_398419_-	ArsA family ATPase	NA	NA	NA	NA	NA
WP_014383701.1|398415_399435_-	ArsA family ATPase	NA	NA	NA	NA	NA
WP_008263345.1|399498_399660_+	DUF4177 domain-containing protein	NA	NA	NA	NA	NA
WP_008263347.1|399662_400130_+	RidA family protein	NA	M1I5B0	Acanthocystis_turfacea_Chlorella_virus	33.6	1.4e-15
>prophage 33
NC_016948	Mycobacterium paraintracellulare, complete sequence	5501090	404631	410210	5501090	protease,holin	uncultured_Mediterranean_phage(50.0%)	5	NA	NA
WP_008263368.1|404631_405825_+|protease	acid resistance serine protease MarP	protease	A0A1B1IRH0	uncultured_Mediterranean_phage	25.0	9.9e-05
WP_008263370.1|405817_406789_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_014381700.1|406789_407308_-|holin	phage holin family protein	holin	NA	NA	NA	NA
WP_020188338.1|407545_408244_+	peptidase	NA	NA	NA	NA	NA
WP_008263376.1|408254_410210_-	acetate--CoA ligase	NA	A0A2H4PQU7	Staphylococcus_phage	39.6	1.8e-88
>prophage 34
NC_016948	Mycobacterium paraintracellulare, complete sequence	5501090	415342	416962	5501090		Bacillus_virus(100.0%)	1	NA	NA
WP_014383708.1|415342_416962_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	31.4	2.1e-13
>prophage 35
NC_016948	Mycobacterium paraintracellulare, complete sequence	5501090	430777	445219	5501090		Mycobacterium_phage(33.33%)	13	NA	NA
WP_014383725.1|430777_431566_+	hypothetical protein	NA	A0A2D1GDD2	Mycobacterium_phage	37.0	6.3e-32
WP_014383727.1|432511_432715_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014383728.1|432722_433460_-	hypothetical protein	NA	NA	NA	NA	NA
WP_080587977.1|433496_435077_-	recombinase family protein	NA	A0A2P1JTH7	Mycobacterium_phage	59.7	9.4e-144
WP_080587978.1|435113_435242_+	DUF4244 domain-containing protein	NA	NA	NA	NA	NA
WP_026071053.1|435277_435565_+	hypothetical protein	NA	NA	NA	NA	NA
WP_136244212.1|435500_435902_+	flp pilus-assembly TadE/G-like family protein	NA	NA	NA	NA	NA
WP_008263424.1|435898_436924_-	DUF5593 domain-containing protein	NA	NA	NA	NA	NA
WP_014383731.1|436995_439329_-	DEAD/DEAH box helicase	NA	A0A1B1IUF6	uncultured_Mediterranean_phage	29.2	4.6e-06
WP_007772268.1|439588_439792_+	cold shock protein CspA	NA	A0A1X9IGI9	Lactococcus_phage	57.8	8.9e-15
WP_008263431.1|439953_440544_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014383732.1|440747_443561_+	type I DNA topoisomerase	NA	A0A2K9L5F8	Tupanvirus	30.4	1.3e-98
WP_085976420.1|443557_445219_-	adenylate/guanylate cyclase domain-containing protein	NA	A0A1B1IWY2	uncultured_Mediterranean_phage	32.8	1.7e-18
>prophage 36
NC_016948	Mycobacterium paraintracellulare, complete sequence	5501090	448476	453640	5501090		Cafeteria_roenbergensis_virus(33.33%)	6	NA	NA
WP_014710838.1|448476_449421_+	GDP-mannose 4,6-dehydratase	NA	E3T4Y8	Cafeteria_roenbergensis_virus	31.2	1.3e-31
WP_009953616.1|449417_449759_-	DUF2304 domain-containing protein	NA	NA	NA	NA	NA
WP_009953617.1|449755_450454_-	glycosyltransferase family 2 protein	NA	NA	NA	NA	NA
WP_014378966.1|450489_451740_-	hypothetical protein	NA	NA	NA	NA	NA
WP_009953618.1|451864_452935_+	DUF475 domain-containing protein	NA	A0A172Q0Y5	Acinetobacter_phage	40.7	2.2e-56
WP_008263447.1|453151_453640_-	inorganic diphosphatase	NA	A0A2H4J8U1	uncultured_Caudovirales_phage	46.1	1.6e-30
>prophage 37
NC_016948	Mycobacterium paraintracellulare, complete sequence	5501090	457184	457796	5501090		Hokovirus(100.0%)	1	NA	NA
WP_008263453.1|457184_457796_+	hypoxanthine phosphoribosyltransferase	NA	A0A1V0SEQ1	Hokovirus	25.7	3.5e-06
>prophage 38
NC_016948	Mycobacterium paraintracellulare, complete sequence	5501090	467235	471135	5501090	protease	Bathycoccus_sp._RCC1105_virus(33.33%)	3	NA	NA
WP_014378980.1|467235_469668_+|protease	ATP-dependent zinc metalloprotease FtsH	protease	E5ESM9	Bathycoccus_sp._RCC1105_virus	41.3	4.4e-100
WP_014378981.1|469684_470287_+	GTP cyclohydrolase I FolE	NA	E7DN69	Pneumococcus_phage	54.1	1.5e-46
WP_085976422.1|470283_471135_+	dihydropteroate synthase	NA	S4VNV0	Pandoravirus	32.7	9.2e-21
>prophage 39
NC_016948	Mycobacterium paraintracellulare, complete sequence	5501090	477335	482178	5501090	protease,tRNA	Tupanvirus(33.33%)	3	NA	NA
WP_008263500.1|477335_478832_+|tRNA	lysine--tRNA ligase	tRNA	A0A2K9KZX5	Tupanvirus	37.1	1.9e-74
WP_008263502.1|478959_479298_+	iron-regulated nucleoid-associated protein Lsr2	NA	A0A2D1GPL8	Mycobacterium_phage	41.5	3.5e-16
WP_008263504.1|479634_482178_+|protease	ATP-dependent protease ATP-binding subunit ClpC	protease	K4FB40	Cronobacter_phage	39.6	1.4e-128
>prophage 40
NC_016948	Mycobacterium paraintracellulare, complete sequence	5501090	492306	493716	5501090	tRNA	Catovirus(100.0%)	1	NA	NA
WP_041784779.1|492306_493716_+|tRNA	cysteine--tRNA ligase	tRNA	A0A1V0SAQ2	Catovirus	27.1	3.5e-41
>prophage 41
NC_016948	Mycobacterium paraintracellulare, complete sequence	5501090	500138	500960	5501090		Pithovirus(100.0%)	1	NA	NA
WP_014383754.1|500138_500960_-	metal ABC transporter ATP-binding protein	NA	W5SAS9	Pithovirus	26.8	4.9e-11
>prophage 42
NC_016948	Mycobacterium paraintracellulare, complete sequence	5501090	518408	519944	5501090		Hepacivirus(100.0%)	1	NA	NA
WP_014383763.1|518408_519944_-	fatty acid--CoA ligase family protein	NA	Q75ZG1	Hepacivirus	26.7	2.7e-39
>prophage 43
NC_016948	Mycobacterium paraintracellulare, complete sequence	5501090	529605	530511	5501090		Trichoplusia_ni_ascovirus(100.0%)	1	NA	NA
WP_008263643.1|529605_530511_+	SDR family oxidoreductase	NA	Q06VL0	Trichoplusia_ni_ascovirus	28.2	7.8e-10
>prophage 44
NC_016948	Mycobacterium paraintracellulare, complete sequence	5501090	543762	544695	5501090		Ostreococcus_lucimarinus_virus(100.0%)	1	NA	NA
WP_008263678.1|543762_544695_+	acetaldehyde dehydrogenase (acetylating)	NA	G9E526	Ostreococcus_lucimarinus_virus	32.9	1.6e-34
>prophage 45
NC_016948	Mycobacterium paraintracellulare, complete sequence	5501090	560509	565368	5501090		Staphylococcus_phage(50.0%)	4	NA	NA
WP_008263720.1|560509_562162_+	acyl-CoA synthetase	NA	A0A2H4PQM9	Staphylococcus_phage	23.8	6.0e-16
WP_008263722.1|562192_562960_+	fructosamine kinase family protein	NA	NA	NA	NA	NA
WP_008263723.1|562996_563821_+	amidohydrolase	NA	NA	NA	NA	NA
WP_008263726.1|563817_565368_+	acetolactate synthase large subunit	NA	E5EQ70	Micromonas_sp._RCC1109_virus	32.6	3.3e-08
>prophage 46
NC_016948	Mycobacterium paraintracellulare, complete sequence	5501090	598986	605658	5501090		Bacillus_phage(50.0%)	8	NA	NA
WP_008263800.1|598986_599706_+	two-component system response regulator PhoP	NA	W8CYM9	Bacillus_phage	36.3	2.8e-34
WP_014381773.1|599746_601189_+	HAMP domain-containing histidine kinase	NA	W8CYF6	Bacillus_phage	29.5	9.2e-21
WP_009951974.1|601176_601581_-	HIT family protein	NA	NA	NA	NA	NA
WP_009951973.1|601587_602025_-	nuclear transport factor 2 family protein	NA	NA	NA	NA	NA
WP_008263811.1|602213_603341_-	NDMA-dependent alcohol dehydrogenase	NA	E3SJ82	Synechococcus_phage	27.6	1.2e-28
WP_008263812.1|603541_604081_-	hypothetical protein	NA	NA	NA	NA	NA
WP_008263814.1|604083_604293_-	ferredoxin	NA	NA	NA	NA	NA
WP_014379070.1|604305_605658_-	cytochrome P450	NA	M1PWN0	Moumouvirus	27.4	5.6e-12
>prophage 47
NC_016948	Mycobacterium paraintracellulare, complete sequence	5501090	623557	626583	5501090		Mollivirus(50.0%)	2	NA	NA
WP_009951945.1|623557_624448_+	phosphoribosylaminoimidazolesuccinocarboxamide synthase	NA	A0A0M4JBD3	Mollivirus	37.0	5.8e-42
WP_009951944.1|624444_626583_+	S9 family peptidase	NA	A0A1V0SHT0	Klosneuvirus	27.1	8.8e-28
>prophage 48
NC_016948	Mycobacterium paraintracellulare, complete sequence	5501090	637318	638401	5501090		Synechococcus_phage(100.0%)	1	NA	NA
WP_026071462.1|637318_638401_+	NAD(P)-dependent oxidoreductase	NA	A0A0E3FNQ3	Synechococcus_phage	31.5	8.7e-08
>prophage 49
NC_016948	Mycobacterium paraintracellulare, complete sequence	5501090	649841	650855	5501090		Mollivirus(100.0%)	1	NA	NA
WP_009951920.1|649841_650855_-	Dyp-type peroxidase	NA	A0A0M5KAH8	Mollivirus	33.3	1.1e-20
>prophage 50
NC_016948	Mycobacterium paraintracellulare, complete sequence	5501090	654494	661912	5501090	protease	Microbacterium_phage(33.33%)	6	NA	NA
WP_085977660.1|654494_656816_+	phosphoribosylformylglycinamidine synthase subunit PurL	NA	A6N228	Microbacterium_phage	63.4	1.6e-272
WP_179293391.1|656835_657474_+|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_014381784.1|657463_658678_-	MCE family protein	NA	NA	NA	NA	NA
WP_009955028.1|658697_659087_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014381785.1|659224_660751_+	amidophosphoribosyltransferase	NA	A0A1B1ISH6	uncultured_Mediterranean_phage	29.9	2.3e-46
WP_009955025.1|660817_661912_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	37.9	7.9e-57
>prophage 51
NC_016948	Mycobacterium paraintracellulare, complete sequence	5501090	668966	674729	5501090		Bacillus_phage(33.33%)	6	NA	NA
WP_014379102.1|668966_669755_+	response regulator transcription factor	NA	W8CYM9	Bacillus_phage	32.5	9.1e-15
WP_009955014.1|669751_670681_+	mycothiol synthase	NA	NA	NA	NA	NA
WP_014379103.1|670818_671970_+	phosphate ABC transporter substrate-binding protein PstS	NA	M4QRU1	Synechococcus_phage	26.7	1.9e-21
WP_041784786.1|671985_673029_+	phosphate ABC transporter permease subunit PstC	NA	NA	NA	NA	NA
WP_014379105.1|673025_673940_+	phosphate ABC transporter permease PstA	NA	NA	NA	NA	NA
WP_008263919.1|673952_674729_+	phosphate ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	34.0	1.6e-16
>prophage 52
NC_016948	Mycobacterium paraintracellulare, complete sequence	5501090	682176	685855	5501090	integrase	Streptococcus_phage(33.33%)	4	672564:672582	700608:700626
672564:672582	attL	CGCCGGCGGCGGCACCATC	NA	NA	NA	NA
WP_014379112.1|682176_682575_-	helix-turn-helix transcriptional regulator	NA	E4ZFI8	Streptococcus_phage	30.4	7.9e-07
WP_014379113.1|682620_683121_-	nucleoside deaminase	NA	S4VYZ2	Pandoravirus	39.2	8.1e-09
WP_014379114.1|683240_684140_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_014383808.1|684700_685855_-|integrase	site-specific integrase	integrase	A0A0E3XBN7	Gordonia_phage	29.2	3.7e-33
700608:700626	attR	GATGGTGCCGCCGCCGGCG	NA	NA	NA	NA
>prophage 53
NC_016948	Mycobacterium paraintracellulare, complete sequence	5501090	698192	706765	5501090		Sulfolobus_virus(33.33%)	5	NA	NA
WP_014383818.1|698192_701003_-	DUF1156 domain-containing protein	NA	K9MDJ7	Sulfolobus_virus	26.6	9.1e-33
WP_041784795.1|701125_702085_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014383820.1|702072_705483_-	DEAD/DEAH box helicase family protein	NA	A0A1B1IUI1	uncultured_Mediterranean_phage	27.4	2.5e-53
WP_014383821.1|705631_706231_-	PIN domain-containing protein	NA	NA	NA	NA	NA
WP_014383822.1|706261_706765_-	helix-turn-helix domain-containing protein	NA	K4ICM4	Acidithiobacillus_phage	34.1	6.5e-06
>prophage 54
NC_016948	Mycobacterium paraintracellulare, complete sequence	5501090	724265	726136	5501090		Synechococcus_phage(50.0%)	2	NA	NA
WP_014379137.1|724265_724604_-	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	A0A222YX16	Synechococcus_phage	34.3	1.1e-06
WP_008253575.1|724729_726136_+	acyl--CoA ligase	NA	Q75ZG1	Hepacivirus	27.5	4.9e-35
>prophage 55
NC_016948	Mycobacterium paraintracellulare, complete sequence	5501090	736660	739105	5501090		Only_Syngen_Nebraska_virus(50.0%)	2	NA	NA
WP_014710968.1|736660_737416_+	CTP synthase	NA	A0A1J0FA14	Only_Syngen_Nebraska_virus	27.1	1.5e-14
WP_008253607.1|737488_739105_-	FAD-dependent oxidoreductase	NA	A0A2P0ZL82	Lactobacillus_phage	27.8	2.1e-26
>prophage 56
NC_016948	Mycobacterium paraintracellulare, complete sequence	5501090	743396	745124	5501090		Lactobacillus_phage(100.0%)	1	NA	NA
WP_014383833.1|743396_745124_+	FAD-dependent oxidoreductase	NA	A0A2P0ZL82	Lactobacillus_phage	24.1	1.2e-19
>prophage 57
NC_016948	Mycobacterium paraintracellulare, complete sequence	5501090	748271	751514	5501090		Mycobacterium_phage(50.0%)	3	NA	NA
WP_014941295.1|748271_749093_+	alpha/beta fold hydrolase	NA	A0A249XTU1	Mycobacterium_phage	26.3	4.7e-06
WP_139826526.1|749097_750702_-	multicopper oxidase family protein	NA	NA	NA	NA	NA
WP_008253618.1|750791_751514_-	SDR family oxidoreductase	NA	A0A0G2Y8L6	Acanthamoeba_polyphaga_mimivirus	32.3	3.2e-06
>prophage 58
NC_016948	Mycobacterium paraintracellulare, complete sequence	5501090	755348	756158	5501090		Trichoplusia_ni_ascovirus(100.0%)	1	NA	NA
WP_014379153.1|755348_756158_+	SDR family oxidoreductase	NA	Q06VL0	Trichoplusia_ni_ascovirus	30.4	1.2e-17
>prophage 59
NC_016948	Mycobacterium paraintracellulare, complete sequence	5501090	809706	812408	5501090	transposase	Staphylococcus_phage(50.0%)	2	NA	NA
WP_142305508.1|809706_810825_-|transposase	IS30 family transposase	transposase	W5R8L2	Staphylococcus_phage	32.6	5.1e-35
WP_139826619.1|811114_812408_+|transposase	IS3 family transposase	transposase	Q8W6R2	Burkholderia_virus	48.4	2.4e-57
>prophage 60
NC_016948	Mycobacterium paraintracellulare, complete sequence	5501090	841081	845023	5501090		Catovirus(50.0%)	4	NA	NA
WP_014383874.1|841081_842485_+	fatty acid--CoA ligase family protein	NA	A0A1V0SBX8	Catovirus	27.1	3.9e-16
WP_014379215.1|842481_843108_+	hypothetical protein	NA	NA	NA	NA	NA
WP_008253794.1|843117_843303_+	(2Fe-2S)-binding protein	NA	NA	NA	NA	NA
WP_009951798.1|843307_845023_-	alpha-keto acid decarboxylase family protein	NA	E4WLQ6	Ostreococcus_tauri_virus	20.0	1.7e-05
>prophage 61
NC_016948	Mycobacterium paraintracellulare, complete sequence	5501090	860423	862073	5501090		Acidianus_filamentous_virus(100.0%)	1	NA	NA
WP_014379227.1|860423_862073_-	DEAD/DEAH box helicase	NA	B2CRJ8	Acidianus_filamentous_virus	23.1	2.7e-16
>prophage 62
NC_016948	Mycobacterium paraintracellulare, complete sequence	5501090	866236	869815	5501090		Macacine_betaherpesvirus(50.0%)	5	NA	NA
WP_014383885.1|866236_867031_-	transglycosylase family protein	NA	A0A2I6B0Z0	Macacine_betaherpesvirus	65.8	6.6e-05
WP_009957587.1|867460_867739_-	MoaD/ThiS family protein	NA	NA	NA	NA	NA
WP_041784803.1|867743_868838_-	GTP 3',8-cyclase MoaA	NA	NA	NA	NA	NA
WP_014383886.1|868834_869242_-	YccF domain-containing protein	NA	NA	NA	NA	NA
WP_008253852.1|869407_869815_+	cold-shock protein	NA	Q9AZD3	Lactococcus_phage	46.0	1.3e-09
>prophage 63
NC_016948	Mycobacterium paraintracellulare, complete sequence	5501090	898929	901317	5501090		Only_Syngen_Nebraska_virus(100.0%)	1	NA	NA
WP_014383899.1|898929_901317_+	cation-translocating P-type ATPase	NA	A0A1J0FA34	Only_Syngen_Nebraska_virus	26.8	3.4e-28
>prophage 64
NC_016948	Mycobacterium paraintracellulare, complete sequence	5501090	923741	928028	5501090		Mycobacterium_phage(50.0%)	3	NA	NA
WP_008253954.1|923741_924671_-	Ku protein	NA	A0A249XRB2	Mycobacterium_phage	50.0	2.7e-66
WP_014383905.1|924825_925749_-	carbohydrate kinase	NA	NA	NA	NA	NA
WP_008253977.1|925760_928028_+	ATP-dependent DNA ligase	NA	A0A291AUP8	Sinorhizobium_phage	35.6	1.7e-37
>prophage 65
NC_016948	Mycobacterium paraintracellulare, complete sequence	5501090	941138	947618	5501090		Bacillus_phage(33.33%)	5	NA	NA
WP_008254003.1|941138_943481_+	DNA helicase PcrA	NA	A7KV33	Bacillus_phage	36.8	6.5e-117
WP_179945066.1|943565_944156_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014383910.1|944157_945210_-	M23 family metallopeptidase	NA	A0A2D1G842	Mycobacterium_phage	43.4	9.6e-20
WP_014383911.1|945539_946703_+	ADP-forming succinate--CoA ligase subunit beta	NA	NA	NA	NA	NA
WP_008254012.1|946715_947618_+	succinate--CoA ligase subunit alpha	NA	A0A2K9L5E9	Tupanvirus	31.8	2.6e-13
>prophage 66
NC_016948	Mycobacterium paraintracellulare, complete sequence	5501090	952980	955207	5501090		Synechococcus_phage(50.0%)	2	NA	NA
WP_041784810.1|952980_953610_+	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	35.4	5.8e-20
WP_008254027.1|953623_955207_+	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	NA	Q58MG4	Prochlorococcus_phage	41.9	3.1e-54
>prophage 67
NC_016948	Mycobacterium paraintracellulare, complete sequence	5501090	959402	960251	5501090		Indivirus(100.0%)	1	NA	NA
WP_008254041.1|959402_960251_+	aldo/keto reductase	NA	A0A1V0SDE7	Indivirus	30.7	1.0e-35
>prophage 68
NC_016948	Mycobacterium paraintracellulare, complete sequence	5501090	970032	973825	5501090		Bacillus_phage(66.67%)	3	NA	NA
WP_008254065.1|970032_970719_+	two-component system response regulator MrpA	NA	W8CYM9	Bacillus_phage	38.7	1.3e-36
WP_036397793.1|970735_972298_+	HAMP domain-containing histidine kinase	NA	W8CYF6	Bacillus_phage	28.3	2.4e-19
WP_008254070.1|972370_973825_+	trypsin-like peptidase domain-containing protein	NA	W5SAB9	Pithovirus	34.1	1.1e-05
>prophage 69
NC_016948	Mycobacterium paraintracellulare, complete sequence	5501090	976990	977902	5501090		Bacillus_phage(100.0%)	1	NA	NA
WP_041784812.1|976990_977902_+	UTP--glucose-1-phosphate uridylyltransferase	NA	A0A127AW70	Bacillus_phage	39.2	3.4e-45
>prophage 70
NC_016948	Mycobacterium paraintracellulare, complete sequence	5501090	985459	986758	5501090		Mycobacterium_phage(100.0%)	1	NA	NA
WP_080587982.1|985459_986758_+	cytochrome P450	NA	V5UQK0	Mycobacterium_phage	23.5	1.2e-16
>prophage 71
NC_016948	Mycobacterium paraintracellulare, complete sequence	5501090	991020	992642	5501090		Synechococcus_phage(50.0%)	2	NA	NA
WP_009957791.1|991020_992037_+	GHMP kinase	NA	A0A222YW25	Synechococcus_phage	39.2	1.6e-56
WP_179960058.1|992024_992642_+	SIS domain-containing protein	NA	A0A067XQR2	Caulobacter_phage	32.7	2.2e-11
>prophage 72
NC_016948	Mycobacterium paraintracellulare, complete sequence	5501090	996035	996632	5501090		Pacmanvirus(100.0%)	1	NA	NA
WP_014383932.1|996035_996632_-	alpha-ketoglutarate-dependent dioxygenase AlkB	NA	A0A1X6WG33	Pacmanvirus	30.4	2.5e-09
>prophage 73
NC_016948	Mycobacterium paraintracellulare, complete sequence	5501090	1000519	1001776	5501090		Pandoravirus(100.0%)	1	NA	NA
WP_014383935.1|1000519_1001776_-	aminodeoxychorismate synthase component I	NA	S4VT78	Pandoravirus	42.5	6.1e-37
>prophage 74
NC_016948	Mycobacterium paraintracellulare, complete sequence	5501090	1007959	1008754	5501090		Ostreococcus_mediterraneus_virus(100.0%)	1	NA	NA
WP_014383940.1|1007959_1008754_-	FkbM family methyltransferase	NA	A0A0P0C5Z9	Ostreococcus_mediterraneus_virus	33.3	1.3e-08
>prophage 75
NC_016948	Mycobacterium paraintracellulare, complete sequence	5501090	1015792	1017490	5501090		Catovirus(100.0%)	1	NA	NA
WP_014383945.1|1015792_1017490_+	GMC family oxidoreductase	NA	A0A1V0S9J5	Catovirus	43.8	7.5e-06
>prophage 76
NC_016948	Mycobacterium paraintracellulare, complete sequence	5501090	1026704	1027277	5501090		Enterobacteria_phage(100.0%)	1	NA	NA
WP_008254170.1|1026704_1027277_-	dTDP-4-dehydrorhamnose 3,5-epimerase family protein	NA	I7HJC4	Enterobacteria_phage	32.2	1.2e-13
>prophage 77
NC_016948	Mycobacterium paraintracellulare, complete sequence	5501090	1034839	1038540	5501090	tRNA	Klosneuvirus(50.0%)	3	NA	NA
WP_014383954.1|1034839_1036384_-|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SHR2	Klosneuvirus	38.4	8.1e-100
WP_080587983.1|1036402_1037245_+	TatD family hydrolase	NA	NA	NA	NA	NA
WP_009954283.1|1037451_1038540_+	resuscitation-promoting factor	NA	Q856D9	Mycobacterium_phage	57.1	2.6e-20
>prophage 78
NC_016948	Mycobacterium paraintracellulare, complete sequence	5501090	1050503	1051829	5501090		uncultured_Caudovirales_phage(50.0%)	2	NA	NA
WP_008254208.1|1050503_1050848_-	arsenate reductase (glutaredoxin)	NA	A0A2H4J8T1	uncultured_Caudovirales_phage	57.8	4.4e-30
WP_008254209.1|1050848_1051829_-	ribose-phosphate diphosphokinase	NA	A0A2H4UV84	Bodo_saltans_virus	34.7	8.1e-45
>prophage 79
NC_016948	Mycobacterium paraintracellulare, complete sequence	5501090	1061738	1066316	5501090		Streptococcus_phage(50.0%)	6	NA	NA
WP_014383960.1|1061738_1063031_+	phosphopyruvate hydratase	NA	W6LP63	Streptococcus_phage	55.9	1.4e-132
WP_014383961.1|1063032_1063734_+	septum formation initiator family protein	NA	NA	NA	NA	NA
WP_009954138.1|1063726_1064215_+	DUF501 domain-containing protein	NA	NA	NA	NA	NA
WP_041784817.1|1064208_1065159_+	Ppx/GppA family phosphatase	NA	NA	NA	NA	NA
WP_009954136.1|1065270_1065576_+	hypothetical protein	NA	NA	NA	NA	NA
WP_009954135.1|1065635_1066316_-	response regulator	NA	W8CYM9	Bacillus_phage	31.7	5.8e-26
>prophage 80
NC_016948	Mycobacterium paraintracellulare, complete sequence	5501090	1069883	1072034	5501090		Only_Syngen_Nebraska_virus(100.0%)	1	NA	NA
WP_014383965.1|1069883_1072034_-	potassium-transporting ATPase subunit KdpB	NA	A0A1J0FA34	Only_Syngen_Nebraska_virus	24.3	8.3e-26
>prophage 81
NC_016948	Mycobacterium paraintracellulare, complete sequence	5501090	1075565	1076339	5501090		Bacillus_phage(100.0%)	1	NA	NA
WP_009954125.1|1075565_1076339_-	response regulator transcription factor	NA	W8CYM9	Bacillus_phage	35.9	9.5e-33
>prophage 82
NC_016948	Mycobacterium paraintracellulare, complete sequence	5501090	1094147	1095779	5501090		Staphylococcus_phage(100.0%)	1	NA	NA
WP_014383982.1|1094147_1095779_+	fatty acid--CoA ligase	NA	A0A2H4PQU7	Staphylococcus_phage	23.7	1.6e-29
>prophage 83
NC_016948	Mycobacterium paraintracellulare, complete sequence	5501090	1106777	1107896	5501090	transposase	Staphylococcus_phage(100.0%)	1	NA	NA
WP_142305508.1|1106777_1107896_+|transposase	IS30 family transposase	transposase	W5R8L2	Staphylococcus_phage	32.6	5.1e-35
>prophage 84
NC_016948	Mycobacterium paraintracellulare, complete sequence	5501090	1111604	1115035	5501090		Streptococcus_phage(50.0%)	3	NA	NA
WP_014383986.1|1111604_1113011_+	cystathionine beta-synthase	NA	A0A1X9I5K7	Streptococcus_phage	41.1	1.3e-56
WP_008254318.1|1113122_1113857_+	RDD family protein	NA	NA	NA	NA	NA
WP_014383987.1|1113868_1115035_+	cystathionine gamma-synthase	NA	A0A0B5JD48	Pandoravirus	33.2	2.5e-24
>prophage 85
NC_016948	Mycobacterium paraintracellulare, complete sequence	5501090	1120928	1129570	5501090		Flavobacterium_phage(25.0%)	8	NA	NA
WP_008254334.1|1120928_1121717_+	isoprenyl transferase	NA	R9W0U9	Flavobacterium_phage	36.7	1.2e-14
WP_014383990.1|1121865_1122291_+	hypothetical protein	NA	NA	NA	NA	NA
WP_008254336.1|1122297_1123236_-	type I pantothenate kinase	NA	NA	NA	NA	NA
WP_008254337.1|1123351_1124632_+	serine hydroxymethyltransferase	NA	A0A240F3L3	Aeromonas_phage	47.5	1.0e-84
WP_008254339.1|1124728_1125556_+	acyl-ACP desaturase	NA	NA	NA	NA	NA
WP_008254341.1|1125800_1127102_+	PhoH family protein	NA	A0A2L0UZX2	Agrobacterium_phage	31.2	1.0e-23
WP_008254353.1|1127190_1128066_+	polysaccharide deacetylase family protein	NA	NA	NA	NA	NA
WP_008254355.1|1128115_1129570_+	adenylate/guanylate cyclase domain-containing protein	NA	A0A1B1IWY2	uncultured_Mediterranean_phage	28.6	3.8e-14
>prophage 86
NC_016948	Mycobacterium paraintracellulare, complete sequence	5501090	1136148	1143698	5501090		Tupanvirus(25.0%)	5	NA	NA
WP_080588057.1|1136148_1139430_+	non-ribosomal peptide synthetase	NA	A0A2K9L3I8	Tupanvirus	30.6	5.4e-61
WP_014383996.1|1139488_1141033_+	carboxylesterase/lipase family protein	NA	M1PNU1	Moumouvirus	33.2	4.2e-32
WP_014383997.1|1141029_1142130_-	NAD-dependent epimerase/dehydratase family protein	NA	Q76TT0	Molluscum_contagiosum_virus	32.1	2.6e-28
WP_085976478.1|1142191_1142404_-	exodeoxyribonuclease VII small subunit	NA	NA	NA	NA	NA
WP_014383998.1|1142450_1143698_-	exodeoxyribonuclease VII large subunit	NA	A0A1B3AYB4	Gordonia_phage	51.5	5.8e-72
>prophage 87
NC_016948	Mycobacterium paraintracellulare, complete sequence	5501090	1151527	1158106	5501090		Synechococcus_phage(50.0%)	8	NA	NA
WP_139826564.1|1151527_1152103_+	C40 family peptidase	NA	A0A0K2FNG4	Mycobacterium_phage	37.3	7.9e-08
WP_009953431.1|1152465_1152789_+	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
WP_014384004.1|1152837_1153521_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014381976.1|1153667_1153877_+	hypothetical protein	NA	NA	NA	NA	NA
WP_009953429.1|1153828_1154662_-	adenylate/guanylate cyclase domain-containing protein	NA	NA	NA	NA	NA
WP_014384005.1|1154784_1156194_+	glucose-6-phosphate dehydrogenase	NA	E3SJC5	Synechococcus_phage	35.7	2.7e-65
WP_009953426.1|1156210_1157233_+	decarboxylating 6-phosphogluconate dehydrogenase	NA	M1T2E7	Synechococcus_phage	53.6	2.9e-93
WP_008254400.1|1157242_1158106_-	alpha/beta hydrolase	NA	A0A0M4K6M8	Mollivirus	29.8	5.3e-08
>prophage 88
NC_016948	Mycobacterium paraintracellulare, complete sequence	5501090	1161618	1163196	5501090		Stenotrophomonas_phage(100.0%)	1	NA	NA
WP_014384008.1|1161618_1163196_-	pyruvate, phosphate dikinase	NA	A0A2D2W2B1	Stenotrophomonas_phage	38.7	4.9e-68
>prophage 89
NC_016948	Mycobacterium paraintracellulare, complete sequence	5501090	1182508	1183369	5501090		Lake_Baikal_phage(100.0%)	1	NA	NA
WP_009957560.1|1182508_1183369_+	CbbQ/NirQ/NorQ/GpvN family protein	NA	A0A2H4N7N3	Lake_Baikal_phage	27.5	4.6e-12
>prophage 90
NC_016948	Mycobacterium paraintracellulare, complete sequence	5501090	1208453	1209167	5501090		Bacillus_phage(100.0%)	1	NA	NA
WP_014384031.1|1208453_1209167_-	NAD-dependent deacylase	NA	A0A068EPD4	Bacillus_phage	32.2	6.5e-20
>prophage 91
NC_016948	Mycobacterium paraintracellulare, complete sequence	5501090	1221032	1222655	5501090		Escherichia_phage(100.0%)	1	NA	NA
WP_014384039.1|1221032_1222655_+	nitrate reductase subunit beta	NA	A0A077SL61	Escherichia_phage	46.5	8.7e-20
>prophage 92
NC_016948	Mycobacterium paraintracellulare, complete sequence	5501090	1230387	1232979	5501090		Mamastrovirus(100.0%)	1	NA	NA
WP_162130208.1|1230387_1232979_+	bifunctional FO biosynthesis protein CofGH	NA	A9ZMK9	Mamastrovirus	35.8	4.5e-18
>prophage 93
NC_016948	Mycobacterium paraintracellulare, complete sequence	5501090	1248225	1250177	5501090		Moumouvirus(50.0%)	2	NA	NA
WP_008254549.1|1248225_1248921_+	adenylyl-sulfate kinase	NA	A0A2P1ELS9	Moumouvirus	40.2	8.6e-25
WP_008254551.1|1248917_1250177_+	sulfate adenylyltransferase	NA	A0A2K9L4R9	Tupanvirus	28.4	4.0e-28
>prophage 94
NC_016948	Mycobacterium paraintracellulare, complete sequence	5501090	1258410	1259370	5501090		Staphylococcus_phage(100.0%)	1	NA	NA
WP_014384053.1|1258410_1259370_+	proline dehydrogenase family protein	NA	A0A2H4PQT6	Staphylococcus_phage	27.3	3.3e-27
>prophage 95
NC_016948	Mycobacterium paraintracellulare, complete sequence	5501090	1265440	1266865	5501090		Hepacivirus(100.0%)	1	NA	NA
WP_014384057.1|1265440_1266865_+	acyl-CoA synthetase	NA	Q75ZG1	Hepacivirus	32.5	5.1e-32
>prophage 96
NC_016948	Mycobacterium paraintracellulare, complete sequence	5501090	1285750	1291248	5501090		Staphylococcus_phage(33.33%)	6	NA	NA
WP_014941451.1|1285750_1286716_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	28.5	3.0e-20
WP_009956308.1|1286705_1287344_-	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_009956306.1|1287416_1288085_-	O-methyltransferase	NA	NA	NA	NA	NA
WP_014384063.1|1288286_1289042_+	RNA polymerase sigma factor SigE	NA	A0A0F6TH34	Sinorhizobium_phage	29.5	2.1e-08
WP_020821917.1|1289183_1289579_+	DNA-directed RNA polymerase sigma-70 factor	NA	NA	NA	NA	NA
WP_014384064.1|1289733_1291248_+	trypsin-like peptidase domain-containing protein	NA	A0A1B1IRH0	uncultured_Mediterranean_phage	32.2	1.9e-08
>prophage 97
NC_016948	Mycobacterium paraintracellulare, complete sequence	5501090	1300824	1302003	5501090		Planktothrix_phage(100.0%)	1	NA	NA
WP_014382019.1|1300824_1302003_+	sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC	NA	G9BWD6	Planktothrix_phage	35.9	3.8e-25
>prophage 98
NC_016948	Mycobacterium paraintracellulare, complete sequence	5501090	1320121	1322961	5501090		Diachasmimorpha_longicaudata_entomopoxvirus(50.0%)	2	NA	NA
WP_014382022.1|1320121_1321825_+	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	34.9	2.8e-53
WP_014382023.1|1321821_1322961_+	acyltransferase	NA	A0A1R3Y5Q6	Salmonella_virus	25.2	8.3e-09
>prophage 99
NC_016948	Mycobacterium paraintracellulare, complete sequence	5501090	1329498	1333365	5501090		Bacillus_virus(100.0%)	1	NA	NA
WP_014384070.1|1329498_1333365_-	bifunctional diguanylate cyclase/phosphodiesterase	NA	G3MA91	Bacillus_virus	31.2	6.9e-07
>prophage 100
NC_016948	Mycobacterium paraintracellulare, complete sequence	5501090	1338154	1343779	5501090		Bacillus_phage(66.67%)	3	NA	NA
WP_008254716.1|1338154_1339921_-	sensor domain-containing protein	NA	M1HTZ5	Acanthocystis_turfacea_Chlorella_virus	31.2	3.7e-16
WP_009953974.1|1340099_1342016_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	31.4	4.3e-50
WP_009953975.1|1342012_1343779_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	26.3	1.1e-39
>prophage 101
NC_016948	Mycobacterium paraintracellulare, complete sequence	5501090	1352580	1354416	5501090		Planktothrix_phage(100.0%)	1	NA	NA
WP_008254738.1|1352580_1354416_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.7	1.9e-15
>prophage 102
NC_016948	Mycobacterium paraintracellulare, complete sequence	5501090	1358627	1360469	5501090		Noumeavirus(100.0%)	1	NA	NA
WP_008254752.1|1358627_1360469_+	adenylyl-sulfate kinase	NA	A0A1Q1PNX7	Noumeavirus	25.6	3.4e-28
>prophage 103
NC_016948	Mycobacterium paraintracellulare, complete sequence	5501090	1367245	1367929	5501090		Mycobacterium_phage(100.0%)	1	NA	NA
WP_026071516.1|1367245_1367929_-	hypothetical protein	NA	Q9ZX60	Mycobacterium_phage	44.9	7.1e-24
>prophage 104
NC_016948	Mycobacterium paraintracellulare, complete sequence	5501090	1379860	1380520	5501090		Pandoravirus(100.0%)	1	NA	NA
WP_008254793.1|1379860_1380520_+	threonylcarbamoyl-AMP synthase	NA	S4VW33	Pandoravirus	36.3	2.5e-18
>prophage 105
NC_016948	Mycobacterium paraintracellulare, complete sequence	5501090	1401187	1407184	5501090		Mycobacterium_phage(40.0%)	6	NA	NA
WP_008254846.1|1401187_1401901_-	hypothetical protein	NA	A0A222ZL07	Mycobacterium_phage	29.7	1.5e-11
WP_008254847.1|1401923_1402232_-	hypothetical protein	NA	A0A1J0MBV8	Mycobacterium_phage	49.0	1.7e-17
WP_008254850.1|1402293_1402785_-	methylated-DNA--[protein]-cysteine S-methyltransferase	NA	A0A0G2Y1B6	Acanthamoeba_polyphaga_mimivirus	51.4	9.1e-21
WP_008254852.1|1402781_1404269_-	DNA-3-methyladenine glycosylase 2 family protein	NA	NA	NA	NA	NA
WP_008254855.1|1404471_1405545_+	GGDEF domain-containing protein	NA	A0A2D0W9B6	Bordetella_phage	44.7	1.2e-09
WP_014384080.1|1405558_1407184_-	adenylate/guanylate cyclase domain-containing protein	NA	A0A1B1IWY2	uncultured_Mediterranean_phage	30.4	1.2e-13
>prophage 106
NC_016948	Mycobacterium paraintracellulare, complete sequence	5501090	1418443	1421787	5501090		Bacillus_phage(50.0%)	2	NA	NA
WP_085978368.1|1418443_1420483_-	ATP-dependent DNA helicase	NA	A0A127AW80	Bacillus_phage	26.9	7.0e-51
WP_014384085.1|1420479_1421787_-	nicotinate phosphoribosyltransferase	NA	G3MA18	Bacillus_virus	35.6	4.1e-44
>prophage 107
NC_016948	Mycobacterium paraintracellulare, complete sequence	5501090	1427056	1434217	5501090		Bacillus_phage(66.67%)	7	NA	NA
WP_014384091.1|1427056_1427674_+	RdgB/HAM1 family non-canonical purine NTP pyrophosphatase	NA	A0A0P0A2M4	Ugandan_cassava_brown_streak_virus	32.8	3.1e-10
WP_009952852.1|1427842_1428193_-	DUF3817 domain-containing protein	NA	NA	NA	NA	NA
WP_026071506.1|1428189_1428570_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014384093.1|1428825_1429155_+	hypothetical protein	NA	NA	NA	NA	NA
WP_009952856.1|1429162_1429588_-	DUF393 domain-containing protein	NA	NA	NA	NA	NA
WP_036458564.1|1429859_1432475_+	ATP-binding cassette domain-containing protein	NA	W8CYL7	Bacillus_phage	27.3	1.7e-28
WP_014384095.1|1432471_1434217_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	28.3	1.4e-23
>prophage 108
NC_016948	Mycobacterium paraintracellulare, complete sequence	5501090	1441370	1442120	5501090		Trichoplusia_ni_ascovirus(100.0%)	1	NA	NA
WP_008254916.1|1441370_1442120_+	3-oxoacyl-ACP reductase FabG	NA	Q06VL0	Trichoplusia_ni_ascovirus	25.5	2.4e-09
>prophage 109
NC_016948	Mycobacterium paraintracellulare, complete sequence	5501090	1448878	1450408	5501090		Hepacivirus(100.0%)	1	NA	NA
WP_014384105.1|1448878_1450408_-	acyl--CoA ligase	NA	Q75ZG1	Hepacivirus	24.2	1.5e-16
>prophage 110
NC_016948	Mycobacterium paraintracellulare, complete sequence	5501090	1480080	1481088	5501090		Aureococcus_anophage(100.0%)	1	NA	NA
WP_009957694.1|1480080_1481088_-	Rieske (2Fe-2S) protein	NA	A0A076FFT9	Aureococcus_anophage	25.9	3.1e-07
>prophage 111
NC_016948	Mycobacterium paraintracellulare, complete sequence	5501090	1493000	1494158	5501090		Synechococcus_phage(100.0%)	1	NA	NA
WP_009957681.1|1493000_1494158_-	Zn-dependent alcohol dehydrogenase	NA	E3SJ82	Synechococcus_phage	30.0	6.2e-36
>prophage 112
NC_016948	Mycobacterium paraintracellulare, complete sequence	5501090	1504088	1505597	5501090		Staphylococcus_phage(100.0%)	1	NA	NA
WP_008255024.1|1504088_1505597_-	AMP-binding protein	NA	A0A2H4PQM9	Staphylococcus_phage	30.6	7.6e-26
>prophage 113
NC_016948	Mycobacterium paraintracellulare, complete sequence	5501090	1517750	1519316	5501090		Staphylococcus_phage(100.0%)	1	NA	NA
WP_014384130.1|1517750_1519316_+	AMP-binding protein	NA	A0A2H4PQM9	Staphylococcus_phage	24.4	7.9e-18
>prophage 114
NC_016948	Mycobacterium paraintracellulare, complete sequence	5501090	1526889	1527612	5501090		Rhodococcus_phage(100.0%)	1	NA	NA
WP_009957520.1|1526889_1527612_+	DUF1906 domain-containing protein	NA	A0A2P1JXS5	Rhodococcus_phage	48.4	2.5e-51
>prophage 115
NC_016948	Mycobacterium paraintracellulare, complete sequence	5501090	1551065	1553480	5501090		Vibrio_phage(50.0%)	2	NA	NA
WP_008255097.1|1551065_1551713_-	oligoribonuclease	NA	M4M9I5	Vibrio_phage	42.1	2.7e-25
WP_014384146.1|1551914_1553480_+	DUF853 family protein	NA	A0A248XCZ8	Klebsiella_phage	36.1	3.0e-57
>prophage 116
NC_016948	Mycobacterium paraintracellulare, complete sequence	5501090	1557573	1559163	5501090		Pike_perch_iridovirus(100.0%)	1	NA	NA
WP_041785427.1|1557573_1559163_+	methylcrotonoyl-CoA carboxylase	NA	A0A1B2ITV7	Pike_perch_iridovirus	61.1	3.6e-18
>prophage 117
NC_016948	Mycobacterium paraintracellulare, complete sequence	5501090	1569807	1571055	5501090		Mycobacterium_phage(100.0%)	1	NA	NA
WP_009955409.1|1569807_1571055_+	alpha/beta hydrolase	NA	A0A068F2G2	Mycobacterium_phage	39.8	2.5e-35
>prophage 118
NC_016948	Mycobacterium paraintracellulare, complete sequence	5501090	1579266	1581491	5501090		Propionibacterium_phage(50.0%)	2	NA	NA
WP_009955482.1|1579266_1579737_+	single-stranded DNA-binding protein	NA	A0A1D8ETH0	Propionibacterium_phage	36.7	4.2e-15
WP_009955480.1|1579814_1581491_+	energy-dependent translational throttle protein EttA	NA	A0A2K9L3Z8	Tupanvirus	27.2	3.4e-43
>prophage 119
NC_016948	Mycobacterium paraintracellulare, complete sequence	5501090	1590796	1596830	5501090		Cyanophage(33.33%)	7	NA	NA
WP_026071535.1|1590796_1591447_+	HNH endonuclease	NA	H6WG01	Cyanophage	34.9	1.5e-18
WP_008255162.1|1591514_1591742_+	hypothetical protein	NA	NA	NA	NA	NA
WP_008255165.1|1591728_1592196_+	DUF5130 domain-containing protein	NA	NA	NA	NA	NA
WP_014382173.1|1592196_1594770_-	aminopeptidase N	NA	A0A2K9L1R3	Tupanvirus	31.6	1.3e-46
WP_008255169.1|1594861_1595485_+	DsbA family protein	NA	NA	NA	NA	NA
WP_009955467.1|1595525_1596005_+	ribose-5-phosphate isomerase	NA	NA	NA	NA	NA
WP_014384164.1|1596023_1596830_+	Fpg/Nei family DNA glycosylase	NA	A0A1V0CNR6	Kaumoebavirus	24.9	5.3e-10
>prophage 120
NC_016948	Mycobacterium paraintracellulare, complete sequence	5501090	1600363	1604157	5501090	protease	Agrobacterium_phage(33.33%)	4	NA	NA
WP_008255177.1|1600363_1600954_+|protease	ATP-dependent CLP protease proteolytic subunit ClpP1	protease	A0A223W000	Agrobacterium_phage	47.5	4.7e-40
WP_008255179.1|1600950_1601586_+|protease	ATP-dependent CLP protease proteolytic subunit ClpP2	protease	A0A2H4JEX1	uncultured_Caudovirales_phage	31.8	3.3e-07
WP_162130209.1|1601608_1602517_-	homocysteine S-methyltransferase	NA	NA	NA	NA	NA
WP_008255183.1|1602876_1604157_+|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	protease	G3M9Z9	Bacillus_virus	60.2	2.4e-142
>prophage 121
NC_016948	Mycobacterium paraintracellulare, complete sequence	5501090	1609444	1616324	5501090	tRNA	Streptomyces_phage(33.33%)	6	NA	NA
WP_026071537.1|1609444_1609999_+	transglycosylase family protein	NA	A0A1J0GVU2	Streptomyces_phage	79.7	5.2e-25
WP_014384169.1|1610112_1611372_+	saccharopine dehydrogenase NADP-binding domain-containing protein	NA	NA	NA	NA	NA
WP_014384170.1|1611430_1614079_+|tRNA	valine--tRNA ligase	tRNA	A0A1V0SK04	Klosneuvirus	39.9	2.3e-142
WP_009955948.1|1614075_1615545_+	bifunctional folylpolyglutamate synthase/dihydrofolate synthase	NA	NA	NA	NA	NA
WP_008255199.1|1615541_1615892_+	DUF4233 domain-containing protein	NA	NA	NA	NA	NA
WP_014382181.1|1615913_1616324_+	nucleoside-diphosphate kinase	NA	D2E8E1	Anguillid_herpesvirus	50.0	4.9e-28
>prophage 122
NC_016948	Mycobacterium paraintracellulare, complete sequence	5501090	1621924	1623028	5501090		Streptococcus_phage(100.0%)	1	NA	NA
WP_014384174.1|1621924_1623028_+	glutamate 5-kinase	NA	A0A1X9I5D0	Streptococcus_phage	37.9	8.2e-54
>prophage 123
NC_016948	Mycobacterium paraintracellulare, complete sequence	5501090	1633297	1634581	5501090		Streptococcus_phage(100.0%)	1	NA	NA
WP_026071540.1|1633297_1634581_+	glutamate-5-semialdehyde dehydrogenase	NA	A0A1X9I5D4	Streptococcus_phage	50.8	2.9e-95
>prophage 124
NC_016948	Mycobacterium paraintracellulare, complete sequence	5501090	1646972	1648100	5501090		Mycobacterium_phage(100.0%)	1	NA	NA
WP_009953593.1|1646972_1648100_-	PE-PPE domain-containing protein	NA	A0A222ZKN7	Mycobacterium_phage	35.5	1.4e-21
>prophage 125
NC_016948	Mycobacterium paraintracellulare, complete sequence	5501090	1653005	1664030	5501090		Paenibacillus_phage(100.0%)	1	NA	NA
WP_014379696.1|1653005_1664030_+	type I polyketide synthase	NA	D0R7J2	Paenibacillus_phage	27.5	8.3e-29
>prophage 126
NC_016948	Mycobacterium paraintracellulare, complete sequence	5501090	1678275	1680147	5501090		Tupanvirus(100.0%)	1	NA	NA
WP_080587992.1|1678275_1680147_+	elongation factor 4	NA	A0A2K9L6L3	Tupanvirus	40.5	3.1e-21
>prophage 127
NC_016948	Mycobacterium paraintracellulare, complete sequence	5501090	1687129	1688212	5501090		Bacillus_virus(100.0%)	1	NA	NA
WP_008255301.1|1687129_1688212_+	sulfate ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	38.4	9.9e-28
>prophage 128
NC_016948	Mycobacterium paraintracellulare, complete sequence	5501090	1703211	1708552	5501090	transposase	Moraxella_phage(33.33%)	5	NA	NA
WP_139826567.1|1703211_1704447_+	DUF262 domain-containing protein	NA	A0A0R6PKN1	Moraxella_phage	24.6	9.9e-16
WP_014384204.1|1704443_1705484_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014384205.1|1705909_1706092_-	antitoxin VbhA family protein	NA	NA	NA	NA	NA
WP_139826566.1|1706293_1707374_+|transposase	IS3 family transposase	transposase	S5WIU1	Leptospira_phage	33.8	1.8e-29
WP_085978335.1|1707392_1708552_-|transposase	IS3 family transposase	transposase	U5P429	Shigella_phage	35.4	4.9e-33
>prophage 129
NC_016948	Mycobacterium paraintracellulare, complete sequence	5501090	1712193	1716771	5501090		Pseudomonas_phage(50.0%)	3	NA	NA
WP_051019712.1|1712193_1713501_-	ATP-binding protein	NA	X5I2M2	Pseudomonas_phage	26.7	3.3e-09
WP_014384214.1|1714319_1714613_-	hypothetical protein	NA	NA	NA	NA	NA
WP_041784854.1|1715193_1716771_+	hypothetical protein	NA	A0A222ZLS3	Mycobacterium_phage	78.9	5.0e-206
>prophage 130
NC_016948	Mycobacterium paraintracellulare, complete sequence	5501090	1723469	1724204	5501090		Mollivirus(100.0%)	1	NA	NA
WP_041784858.1|1723469_1724204_+	3-oxoacyl-ACP reductase FabG	NA	A0A0M4JSW6	Mollivirus	26.5	7.0e-09
>prophage 131
NC_016948	Mycobacterium paraintracellulare, complete sequence	5501090	1733172	1741969	5501090		Staphylococcus_phage(50.0%)	8	NA	NA
WP_014384235.1|1733172_1734777_+	acyl--CoA ligase	NA	A0A2H4PQM9	Staphylococcus_phage	30.3	3.7e-31
WP_041784863.1|1734773_1736495_+	acyl--CoA ligase	NA	A0A1V0SBX8	Catovirus	20.2	2.5e-09
WP_080587994.1|1736515_1737040_+	MaoC family dehydratase	NA	NA	NA	NA	NA
WP_014384238.1|1737029_1737866_+	CoA ester lyase	NA	NA	NA	NA	NA
WP_041785461.1|1737956_1738361_+	SCP2 sterol-binding domain-containing protein	NA	NA	NA	NA	NA
WP_014384240.1|1738369_1739908_+	acyl-CoA synthetase	NA	A0A2H4PQU7	Staphylococcus_phage	28.2	1.5e-37
WP_014384241.1|1739904_1741170_+	cytochrome P450	NA	NA	NA	NA	NA
WP_014384242.1|1741177_1741969_+	coniferyl-alcohol dehydrogenase	NA	A0A0M4JSW6	Mollivirus	35.1	6.0e-06
>prophage 132
NC_016948	Mycobacterium paraintracellulare, complete sequence	5501090	1762650	1767266	5501090		Stenotrophomonas_phage(100.0%)	4	NA	NA
WP_014384263.1|1762650_1764165_-	pyruvate, phosphate dikinase	NA	A0A2D2W2B1	Stenotrophomonas_phage	40.7	5.0e-70
WP_014384264.1|1764161_1764779_-	hypothetical protein	NA	NA	NA	NA	NA
WP_041784868.1|1764831_1765749_-	hypothetical protein	NA	NA	NA	NA	NA
WP_051019766.1|1765745_1767266_-	phosphoenolpyruvate-utilizing protein	NA	A0A2D2W2B1	Stenotrophomonas_phage	38.1	7.9e-07
>prophage 133
NC_016948	Mycobacterium paraintracellulare, complete sequence	5501090	1779927	1780998	5501090		Planktothrix_phage(100.0%)	1	NA	NA
WP_014384281.1|1779927_1780998_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	33.3	4.7e-22
>prophage 134
NC_016948	Mycobacterium paraintracellulare, complete sequence	5501090	1784522	1785287	5501090		Trichoplusia_ni_ascovirus(100.0%)	1	NA	NA
WP_014384285.1|1784522_1785287_+	SDR family oxidoreductase	NA	Q06VL0	Trichoplusia_ni_ascovirus	30.6	1.1e-12
>prophage 135
NC_016948	Mycobacterium paraintracellulare, complete sequence	5501090	1815988	1817152	5501090		Synechococcus_phage(100.0%)	1	NA	NA
WP_009976079.1|1815988_1817152_-	NDMA-dependent alcohol dehydrogenase	NA	E3SJ82	Synechococcus_phage	28.8	5.5e-32
>prophage 136
NC_016948	Mycobacterium paraintracellulare, complete sequence	5501090	1826998	1827802	5501090		Trichoplusia_ni_ascovirus(100.0%)	1	NA	NA
WP_009976097.1|1826998_1827802_-	SDR family oxidoreductase	NA	Q06VL0	Trichoplusia_ni_ascovirus	26.1	7.1e-07
>prophage 137
NC_016948	Mycobacterium paraintracellulare, complete sequence	5501090	1872503	1873967	5501090		Hepacivirus(100.0%)	1	NA	NA
WP_014384326.1|1872503_1873967_-	acyl--CoA ligase	NA	Q75ZG1	Hepacivirus	23.8	1.3e-22
>prophage 138
NC_016948	Mycobacterium paraintracellulare, complete sequence	5501090	1885957	1887037	5501090		Acanthocystis_turfacea_Chlorella_virus(100.0%)	1	NA	NA
WP_009976171.1|1885957_1887037_+	hydroxyacid dehydrogenase	NA	M1HUT5	Acanthocystis_turfacea_Chlorella_virus	31.1	5.1e-24
>prophage 139
NC_016948	Mycobacterium paraintracellulare, complete sequence	5501090	1917642	1918263	5501090		Macacine_betaherpesvirus(100.0%)	1	NA	NA
WP_051019731.1|1917642_1918263_-	hypothetical protein	NA	A0A2I6B2H4	Macacine_betaherpesvirus	44.4	2.1e-30
>prophage 140
NC_016948	Mycobacterium paraintracellulare, complete sequence	5501090	1921429	1922200	5501090		Niemeyer_virus(100.0%)	1	NA	NA
WP_009976204.1|1921429_1922200_-	slipin family protein	NA	A0A0U2UF06	Niemeyer_virus	28.3	1.8e-23
>prophage 141
NC_016948	Mycobacterium paraintracellulare, complete sequence	5501090	1943236	1949680	5501090		Escherichia_phage(33.33%)	3	NA	NA
WP_009955698.1|1943236_1944304_+	3-deoxy-7-phosphoheptulonate synthase	NA	A0A060BHG3	Escherichia_phage	48.1	1.1e-82
WP_014384379.1|1944443_1946081_-	AMP-binding protein	NA	A0A1V0SBX8	Catovirus	37.2	3.5e-08
WP_014384380.1|1946176_1949680_+	non-ribosomal peptide synthetase	NA	A0A2K9KZV5	Tupanvirus	23.0	1.2e-42
>prophage 142
NC_016948	Mycobacterium paraintracellulare, complete sequence	5501090	1954832	1965844	5501090		Tupanvirus(100.0%)	2	NA	NA
WP_008255566.1|1954832_1961408_+	non-ribosomal peptide synthetase	NA	A0A2K9KZV5	Tupanvirus	24.6	1.3e-125
WP_014384382.1|1961404_1965844_+	non-ribosomal peptide synthetase	NA	A0A2K9KZV5	Tupanvirus	23.6	5.3e-35
>prophage 143
NC_016948	Mycobacterium paraintracellulare, complete sequence	5501090	1972063	1975159	5501090		Ectocarpus_siliculosus_virus(50.0%)	3	NA	NA
WP_008255583.1|1972063_1973212_+	molecular chaperone DnaJ	NA	Q8QNB4	Ectocarpus_siliculosus_virus	30.4	5.6e-29
WP_014384384.1|1973225_1973987_+	16S rRNA (uracil(1498)-N(3))-methyltransferase	NA	NA	NA	NA	NA
WP_036428749.1|1974100_1975159_+	PhoH family protein	NA	W8D063	Erwinia_phage	44.8	6.7e-45
>prophage 144
NC_016948	Mycobacterium paraintracellulare, complete sequence	5501090	1983286	1986980	5501090	tRNA	Flavobacterium_phage(50.0%)	5	NA	NA
WP_008255602.1|1983286_1984156_+	decaprenyl diphosphate synthase	NA	R9W0U9	Flavobacterium_phage	40.5	7.0e-16
WP_008255604.1|1984155_1984584_+	hypothetical protein	NA	NA	NA	NA	NA
WP_008255605.1|1984587_1984983_-	transcriptional repressor	NA	NA	NA	NA	NA
WP_173662756.1|1984979_1985405_-	metalloregulator ArsR/SmtB family transcription factor	NA	NA	NA	NA	NA
WP_041784918.1|1985588_1986980_+|tRNA	glycine--tRNA ligase	tRNA	A0A2I2L3K8	Orpheovirus	29.7	3.8e-48
>prophage 145
NC_016948	Mycobacterium paraintracellulare, complete sequence	5501090	1993357	1995310	5501090		Helicobacter_phage(100.0%)	1	NA	NA
WP_014382309.1|1993357_1995310_+	DNA primase	NA	A0A1S5REW9	Helicobacter_phage	31.7	8.8e-35
>prophage 146
NC_016948	Mycobacterium paraintracellulare, complete sequence	5501090	2000265	2001198	5501090		Streptococcus_phage(100.0%)	1	NA	NA
WP_008255646.1|2000265_2001198_-	cysteine synthase A	NA	A0A1X9I5K7	Streptococcus_phage	53.4	2.9e-84
>prophage 147
NC_016948	Mycobacterium paraintracellulare, complete sequence	5501090	2020690	2027778	5501090		Tupanvirus(33.33%)	4	NA	NA
WP_014384406.1|2020690_2022643_-	acyl-CoA dehydrogenase family protein	NA	A0A2K9L6M4	Tupanvirus	36.5	3.8e-54
WP_041785548.1|2022692_2025029_-	ATP-binding cassette domain-containing protein	NA	A0A2R8FG22	Brazilian_cedratvirus	31.0	9.0e-18
WP_008255657.1|2025143_2025632_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_193375233.1|2025795_2027778_+	ATP-binding cassette domain-containing protein	NA	A0A2I4R674	Erysipelothrix_phage	27.4	7.4e-05
>prophage 148
NC_016948	Mycobacterium paraintracellulare, complete sequence	5501090	2040258	2045563	5501090	transposase	Burkholderia_virus(33.33%)	5	NA	NA
WP_139826619.1|2040258_2041552_+|transposase	IS3 family transposase	transposase	Q8W6R2	Burkholderia_virus	48.4	2.4e-57
WP_014384415.1|2041833_2043009_-	hypothetical protein	NA	S5Z967	Mycobacterium_phage	43.9	6.6e-86
WP_014384416.1|2043291_2043495_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014384417.1|2043758_2044304_+	hypothetical protein	NA	NA	NA	NA	NA
WP_085978335.1|2044404_2045563_+|transposase	IS3 family transposase	transposase	U5P429	Shigella_phage	35.4	4.9e-33
>prophage 149
NC_016948	Mycobacterium paraintracellulare, complete sequence	5501090	2050238	2054057	5501090		Mycobacterium_phage(50.0%)	2	NA	NA
WP_041784936.1|2050238_2051390_-	alpha/beta hydrolase	NA	A0A1C9LYC8	Mycobacterium_phage	42.2	4.0e-43
WP_014384422.1|2051510_2054057_+	excinuclease ABC subunit UvrA	NA	A0A1B1IVR3	uncultured_Mediterranean_phage	34.3	1.2e-151
>prophage 150
NC_016948	Mycobacterium paraintracellulare, complete sequence	5501090	2080010	2081945	5501090		Catovirus(100.0%)	1	NA	NA
WP_008255722.1|2080010_2081945_+	molecular chaperone HtpG	NA	A0A1V0SAD6	Catovirus	34.3	1.0e-107
>prophage 151
NC_016948	Mycobacterium paraintracellulare, complete sequence	5501090	2085233	2086364	5501090		Synechococcus_phage(100.0%)	1	NA	NA
WP_014384438.1|2085233_2086364_-	NDMA-dependent alcohol dehydrogenase	NA	E3SJ82	Synechococcus_phage	28.9	7.9e-28
>prophage 152
NC_016948	Mycobacterium paraintracellulare, complete sequence	5501090	2105953	2107462	5501090		Staphylococcus_phage(100.0%)	1	NA	NA
WP_179960067.1|2105953_2107462_+	ACR3 family arsenite efflux transporter	NA	A0A2H4PQT9	Staphylococcus_phage	34.7	1.2e-10
>prophage 153
NC_016948	Mycobacterium paraintracellulare, complete sequence	5501090	2115940	2117119	5501090		Escherichia_phage(100.0%)	1	NA	NA
WP_008255771.1|2115940_2117119_-	AAA family ATPase	NA	A0A077SLJ9	Escherichia_phage	37.5	5.9e-58
>prophage 154
NC_016948	Mycobacterium paraintracellulare, complete sequence	5501090	2124932	2125925	5501090		Orpheovirus(100.0%)	1	NA	NA
WP_041784942.1|2124932_2125925_+	thioredoxin-disulfide reductase	NA	A0A2I2L5E1	Orpheovirus	47.6	1.1e-68
>prophage 155
NC_016948	Mycobacterium paraintracellulare, complete sequence	5501090	2131575	2133057	5501090		Paramecium_bursaria_Chlorella_virus(100.0%)	1	NA	NA
WP_041784944.1|2131575_2133057_+	serine/threonine protein kinase	NA	M1HUJ3	Paramecium_bursaria_Chlorella_virus	28.1	1.8e-11
>prophage 156
NC_016948	Mycobacterium paraintracellulare, complete sequence	5501090	2137179	2143168	5501090		Leptospira_phage(66.67%)	5	NA	NA
WP_051019778.1|2137179_2138634_+	His-Xaa-Ser system radical SAM maturase HxsB	NA	S5VT21	Leptospira_phage	39.6	3.5e-97
WP_080588009.1|2138621_2139791_+	His-Xaa-Ser system radical SAM maturase HxsC	NA	S5WIP3	Leptospira_phage	46.7	7.3e-69
WP_158023542.1|2139831_2140362_+	methyltransferase domain-containing protein	NA	NA	NA	NA	NA
WP_041784946.1|2140399_2141284_-	HNH endonuclease	NA	NA	NA	NA	NA
WP_041784947.1|2141602_2143168_-	serine/threonine protein kinase	NA	M1I231	Acanthocystis_turfacea_Chlorella_virus	28.6	1.8e-17
>prophage 157
NC_016948	Mycobacterium paraintracellulare, complete sequence	5501090	2151043	2156149	5501090		Catovirus(50.0%)	4	NA	NA
WP_014384491.1|2151043_2152600_+	AMP-binding protein	NA	A0A1V0SBX8	Catovirus	27.3	4.2e-19
WP_014384492.1|2152692_2154159_+	aldehyde dehydrogenase family protein	NA	NA	NA	NA	NA
WP_014384493.1|2154155_2155364_+	amidohydrolase	NA	NA	NA	NA	NA
WP_014384494.1|2155363_2156149_+	SDR family oxidoreductase	NA	Q06VL0	Trichoplusia_ni_ascovirus	29.5	1.4e-10
>prophage 158
NC_016948	Mycobacterium paraintracellulare, complete sequence	5501090	2181899	2182985	5501090		Synechococcus_phage(100.0%)	1	NA	NA
WP_008255882.1|2181899_2182985_-	S-(hydroxymethyl)mycothiol dehydrogenase	NA	E3SJ82	Synechococcus_phage	29.5	1.3e-30
>prophage 159
NC_016948	Mycobacterium paraintracellulare, complete sequence	5501090	2212503	2215489	5501090		Agrobacterium_phage(50.0%)	4	NA	NA
WP_014384537.1|2212503_2213643_+	bifunctional RNase H/acid phosphatase	NA	A0A2L0V0T1	Agrobacterium_phage	29.9	6.6e-06
WP_014379932.1|2213631_2214036_-	VOC family protein	NA	NA	NA	NA	NA
WP_014384538.1|2213989_2214832_-	AraC family transcriptional regulator	NA	NA	NA	NA	NA
WP_014384539.1|2214916_2215489_-	helix-turn-helix domain-containing protein	NA	F8TVE5	EBPR_siphovirus	46.5	2.8e-05
>prophage 160
NC_016948	Mycobacterium paraintracellulare, complete sequence	5501090	2246166	2247714	5501090		Mycoplasma_phage(100.0%)	1	NA	NA
WP_041784955.1|2246166_2247714_-	leucyl aminopeptidase	NA	Q6GYZ8	Mycoplasma_phage	32.2	3.6e-31
>prophage 161
NC_016948	Mycobacterium paraintracellulare, complete sequence	5501090	2253367	2258913	5501090		Streptococcus_phage(50.0%)	5	NA	NA
WP_008256049.1|2253367_2254444_+	glycerate kinase	NA	W6LM47	Streptococcus_phage	29.7	6.6e-16
WP_008256050.1|2254523_2254880_+	iron-sulfur cluster assembly accessory protein	NA	NA	NA	NA	NA
WP_008256051.1|2254959_2255646_-	hypothetical protein	NA	NA	NA	NA	NA
WP_008256052.1|2255829_2256804_+	carbohydrate kinase family protein	NA	NA	NA	NA	NA
WP_008256053.1|2256954_2258913_-	asparagine synthase (glutamine-hydrolyzing)	NA	I3UKG6	Ostreococcus_lucimarinus_virus	28.3	1.5e-21
>prophage 162
NC_016948	Mycobacterium paraintracellulare, complete sequence	5501090	2268042	2275542	5501090		Clostridium_phage(33.33%)	6	NA	NA
WP_041297826.1|2268042_2269974_-	DEDD exonuclease domain-containing protein	NA	A0A0K2SUJ2	Clostridium_phage	31.4	7.5e-10
WP_170320588.1|2270141_2270336_+	hypothetical protein	NA	NA	NA	NA	NA
WP_041784956.1|2270515_2271667_+	C40 family peptidase	NA	A0A1J0GW44	Streptomyces_phage	41.4	1.1e-16
WP_009953495.1|2271725_2272541_+	DUF4157 domain-containing protein	NA	NA	NA	NA	NA
WP_014384559.1|2272596_2273727_+	GDP-mannose-dependent alpha-(1-6)-phosphatidylinositol monomannoside mannosyltransferase	NA	NA	NA	NA	NA
WP_014384560.1|2273739_2275542_-	long-chain fatty acid--CoA ligase	NA	A0A1V0SBX8	Catovirus	27.2	8.1e-51
>prophage 163
NC_016948	Mycobacterium paraintracellulare, complete sequence	5501090	2281351	2284605	5501090		Mycobacterium_phage(50.0%)	3	NA	NA
WP_008256110.1|2281351_2281846_+	polyadenylate-specific 3'-exoribonuclease AS	NA	A0A249XQ39	Mycobacterium_phage	43.2	2.9e-27
WP_008256111.1|2281920_2283309_+	3-deoxy-7-phosphoheptulonate synthase class II	NA	NA	NA	NA	NA
WP_008256112.1|2283315_2284605_-	serine/threonine protein kinase	NA	S4W2F5	Pandoravirus	35.4	3.8e-18
>prophage 164
NC_016948	Mycobacterium paraintracellulare, complete sequence	5501090	2324226	2325462	5501090		Catovirus(100.0%)	1	NA	NA
WP_008256229.1|2324226_2325462_+	cysteine--1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase	NA	A0A1V0SAQ2	Catovirus	25.1	2.1e-26
>prophage 165
NC_016948	Mycobacterium paraintracellulare, complete sequence	5501090	2332502	2351854	5501090		Tupanvirus(50.0%)	2	NA	NA
WP_167324039.1|2332502_2350346_+	amino acid adenylation domain-containing protein	NA	A0A2K9KZV5	Tupanvirus	26.8	1.4e-147
WP_139826522.1|2350345_2351854_+	MFS transporter	NA	A0A0M3UL24	Mycobacterium_phage	32.4	1.1e-37
>prophage 166
NC_016948	Mycobacterium paraintracellulare, complete sequence	5501090	2361046	2362786	5501090		Catovirus(100.0%)	1	NA	NA
WP_008256254.1|2361046_2362786_+	AMP-binding protein	NA	A0A1V0SBX8	Catovirus	21.1	8.5e-05
>prophage 167
NC_016948	Mycobacterium paraintracellulare, complete sequence	5501090	2367372	2371167	5501090		Dickeya_phage(100.0%)	1	NA	NA
WP_009953405.1|2367372_2371167_+	methionine synthase	NA	A0A140XBC7	Dickeya_phage	56.5	2.6e-14
>prophage 168
NC_016948	Mycobacterium paraintracellulare, complete sequence	5501090	2384655	2386026	5501090		Erysipelothrix_phage(100.0%)	1	NA	NA
WP_014384595.1|2384655_2386026_+	FAD-containing oxidoreductase	NA	A0A2K5B2C5	Erysipelothrix_phage	33.8	1.3e-61
>prophage 169
NC_016948	Mycobacterium paraintracellulare, complete sequence	5501090	2389261	2391091	5501090		Tupanvirus(100.0%)	1	NA	NA
WP_008256304.1|2389261_2391091_+	proteasome ATPase	NA	A0A2K9L596	Tupanvirus	35.4	2.7e-33
>prophage 170
NC_016948	Mycobacterium paraintracellulare, complete sequence	5501090	2402157	2406747	5501090		Acanthocystis_turfacea_Chlorella_virus(50.0%)	3	NA	NA
WP_014384603.1|2402157_2404938_+	RNA helicase	NA	M1ILW8	Acanthocystis_turfacea_Chlorella_virus	34.2	1.2e-69
WP_014384604.1|2405003_2405783_+	DUF4333 domain-containing protein	NA	NA	NA	NA	NA
WP_020188912.1|2405790_2406747_-	5'-3' exonuclease	NA	A0A2P1JXG8	Rhodococcus_phage	35.5	4.5e-24
>prophage 171
NC_016948	Mycobacterium paraintracellulare, complete sequence	5501090	2423064	2423820	5501090		Planktothrix_phage(100.0%)	1	NA	NA
WP_041784969.1|2423064_2423820_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.0	1.3e-23
>prophage 172
NC_016948	Mycobacterium paraintracellulare, complete sequence	5501090	2435951	2450518	5501090		Sulfolobus_monocaudavirus(50.0%)	4	NA	NA
WP_008256379.1|2435951_2436746_+	polyprenol monophosphomannose synthase	NA	A0A0N7A8R9	Sulfolobus_monocaudavirus	39.3	7.5e-25
WP_007770897.1|2436755_2437091_-	RNA polymerase-binding protein RbpA	NA	NA	NA	NA	NA
WP_026071594.1|2437263_2437614_+	hypothetical protein	NA	NA	NA	NA	NA
WP_041785585.1|2437975_2450518_+	type I polyketide synthase	NA	D0R7J2	Paenibacillus_phage	31.4	4.4e-26
>prophage 173
NC_016948	Mycobacterium paraintracellulare, complete sequence	5501090	2465821	2466640	5501090		Bacillus_phage(100.0%)	1	NA	NA
WP_041784971.1|2465821_2466640_+	mycofactocin-coupled SDR family oxidoreductase	NA	W8CYX9	Bacillus_phage	44.2	5.4e-10
>prophage 174
NC_016948	Mycobacterium paraintracellulare, complete sequence	5501090	2470152	2471670	5501090		Mollivirus(100.0%)	1	NA	NA
WP_041784972.1|2470152_2471670_+	carboxylesterase/lipase family protein	NA	A0A0M4JT58	Mollivirus	31.6	3.1e-27
>prophage 175
NC_016948	Mycobacterium paraintracellulare, complete sequence	5501090	2478412	2478973	5501090		Klosneuvirus(100.0%)	1	NA	NA
WP_158020468.1|2478412_2478973_+	pyrazinamidase PncA	NA	A0A1V0SL12	Klosneuvirus	24.7	3.8e-07
>prophage 176
NC_016948	Mycobacterium paraintracellulare, complete sequence	5501090	2484409	2486512	5501090		Planktothrix_phage(50.0%)	2	NA	NA
WP_008256437.1|2484409_2485480_+	sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC	NA	G9BWD6	Planktothrix_phage	30.3	1.0e-21
WP_009956368.1|2485546_2486512_+	patatin-like phospholipase family protein	NA	A0A0H3TN97	Faustovirus	26.7	3.1e-17
>prophage 177
NC_016948	Mycobacterium paraintracellulare, complete sequence	5501090	2505815	2506607	5501090		Trichoplusia_ni_ascovirus(100.0%)	1	NA	NA
WP_014384665.1|2505815_2506607_+	glucose 1-dehydrogenase	NA	Q06VL0	Trichoplusia_ni_ascovirus	30.9	2.0e-14
>prophage 178
NC_016948	Mycobacterium paraintracellulare, complete sequence	5501090	2517566	2518394	5501090		Gordonia_phage(100.0%)	1	NA	NA
WP_008256524.1|2517566_2518394_+	DUF1906 domain-containing protein	NA	A0A1B3B0M0	Gordonia_phage	46.8	1.8e-53
>prophage 179
NC_016948	Mycobacterium paraintracellulare, complete sequence	5501090	2538309	2539044	5501090		Bacillus_virus(100.0%)	1	NA	NA
WP_014384680.1|2538309_2539044_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	32.6	9.4e-22
>prophage 180
NC_016948	Mycobacterium paraintracellulare, complete sequence	5501090	2548829	2549591	5501090		Trichoplusia_ni_ascovirus(100.0%)	1	NA	NA
WP_008256611.1|2548829_2549591_-	SDR family oxidoreductase	NA	Q06VL0	Trichoplusia_ni_ascovirus	32.2	6.1e-16
>prophage 181
NC_016948	Mycobacterium paraintracellulare, complete sequence	5501090	2554769	2556269	5501090		Cyanophage(100.0%)	1	NA	NA
WP_014380122.1|2554769_2556269_-	glucose-6-phosphate dehydrogenase	NA	H6WFS4	Cyanophage	35.8	2.4e-72
>prophage 182
NC_016948	Mycobacterium paraintracellulare, complete sequence	5501090	2559279	2563197	5501090		Klosneuvirus(100.0%)	1	NA	NA
WP_014384687.1|2559279_2563197_-	ATP-dependent RNA helicase HrpA	NA	A0A1V0SIV3	Klosneuvirus	24.6	1.1e-36
>prophage 183
NC_016948	Mycobacterium paraintracellulare, complete sequence	5501090	2583047	2583845	5501090		Gordonia_phage(100.0%)	1	NA	NA
WP_014380139.1|2583047_2583845_-	DUF1906 domain-containing protein	NA	A0A2D1GEF2	Gordonia_phage	49.8	3.7e-56
>prophage 184
NC_016948	Mycobacterium paraintracellulare, complete sequence	5501090	2589948	2591243	5501090	transposase	Burkholderia_virus(100.0%)	1	NA	NA
WP_139826619.1|2589948_2591243_-|transposase	IS3 family transposase	transposase	Q8W6R2	Burkholderia_virus	48.4	2.4e-57
>prophage 185
NC_016948	Mycobacterium paraintracellulare, complete sequence	5501090	2605001	2607824	5501090		Trichoplusia_ni_ascovirus(50.0%)	3	NA	NA
WP_014384701.1|2605001_2605772_+	SDR family oxidoreductase	NA	Q06VL0	Trichoplusia_ni_ascovirus	32.3	1.8e-15
WP_014384702.1|2605779_2606457_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014384703.1|2606591_2607824_-	EstA family serine hydrolase	NA	A0A2K9L1U3	Tupanvirus	30.6	4.1e-30
>prophage 186
NC_016948	Mycobacterium paraintracellulare, complete sequence	5501090	2627804	2630907	5501090		Burkholderia_virus(33.33%)	3	NA	NA
WP_014384715.1|2627804_2629079_+	MFS transporter	NA	Q6JIH2	Burkholderia_virus	26.6	1.5e-14
WP_014382581.1|2629082_2630378_-	competence/damage-inducible protein A	NA	B5TK85	Pseudomonas_phage	42.8	6.1e-16
WP_026071388.1|2630412_2630907_+	macro domain-containing protein	NA	A0A0K1L687	Scale_drop_disease_virus	32.6	9.4e-10
>prophage 187
NC_016948	Mycobacterium paraintracellulare, complete sequence	5501090	2639567	2645150	5501090		Macacine_betaherpesvirus(66.67%)	6	NA	NA
WP_014384721.1|2639567_2640581_+	alcohol dehydrogenase catalytic domain-containing protein	NA	A0A0G2YAX3	Acanthamoeba_polyphaga_mimivirus	28.9	6.2e-32
WP_014384722.1|2640593_2641154_+	YceI family protein	NA	NA	NA	NA	NA
WP_026071387.1|2641173_2642310_-	hypothetical protein	NA	NA	NA	NA	NA
WP_009952996.1|2642939_2643932_+	esterase family protein	NA	A0A2I6B0H1	Macacine_betaherpesvirus	86.1	4.9e-167
WP_014382591.1|2644076_2644607_+	chorismate mutase	NA	NA	NA	NA	NA
WP_014382592.1|2644739_2645150_+	transglycosylase family protein	NA	A0A2I6B0Z0	Macacine_betaherpesvirus	69.4	8.0e-47
>prophage 188
NC_016948	Mycobacterium paraintracellulare, complete sequence	5501090	2661950	2666082	5501090		Bodo_saltans_virus(50.0%)	3	NA	NA
WP_041784974.1|2661950_2662388_-	DUF1810 domain-containing protein	NA	A0A2H4UVK5	Bodo_saltans_virus	40.2	7.1e-17
WP_014384735.1|2662407_2663667_+	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA	NA
WP_179293458.1|2663760_2666082_+	endopeptidase La	NA	A0A0R6PGP8	Moraxella_phage	40.5	1.6e-144
>prophage 189
NC_016948	Mycobacterium paraintracellulare, complete sequence	5501090	2683864	2684968	5501090		Planktothrix_phage(100.0%)	1	NA	NA
WP_014380167.1|2683864_2684968_-	sulfate/molybdate ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	34.7	2.5e-18
>prophage 190
NC_016948	Mycobacterium paraintracellulare, complete sequence	5501090	2692816	2695762	5501090		Ostreococcus_lucimarinus_virus(50.0%)	2	NA	NA
WP_014711685.1|2692816_2694286_+	NADP-dependent phosphogluconate dehydrogenase	NA	M4QQM4	Ostreococcus_lucimarinus_virus	25.7	1.6e-33
WP_014384754.1|2694325_2695762_+	GuaB1 family IMP dehydrogenase-related protein	NA	A0A1V0SHK8	Klosneuvirus	29.3	1.8e-45
>prophage 191
NC_016948	Mycobacterium paraintracellulare, complete sequence	5501090	2709878	2712704	5501090		Prochlorococcus_phage(100.0%)	1	NA	NA
WP_014384758.1|2709878_2712704_-	aminomethyl-transferring glycine dehydrogenase	NA	M4QFZ1	Prochlorococcus_phage	50.9	3.2e-259
>prophage 192
NC_016948	Mycobacterium paraintracellulare, complete sequence	5501090	2723362	2725282	5501090		Bacillus_virus(100.0%)	1	NA	NA
WP_008257000.1|2723362_2725282_+	ABC transporter ATP-binding protein/permease	NA	G3M9Y6	Bacillus_virus	26.7	1.5e-07
>prophage 193
NC_016948	Mycobacterium paraintracellulare, complete sequence	5501090	2730567	2731284	5501090		Bacillus_virus(100.0%)	1	NA	NA
WP_009957627.1|2730567_2731284_-	MgtC/SapB family protein	NA	G3MA03	Bacillus_virus	36.7	2.5e-11
>prophage 194
NC_016948	Mycobacterium paraintracellulare, complete sequence	5501090	2740980	2745849	5501090	protease	Mycobacterium_phage(100.0%)	3	NA	NA
WP_041784980.1|2740980_2742810_-	type VII secretion system ESX-5 AAA family ATPase EccA5	NA	V5UQM2	Mycobacterium_phage	32.3	2.8e-67
WP_014384775.1|2742806_2744006_-	type VII secretion protein EccE	NA	NA	NA	NA	NA
WP_014384776.1|2744025_2745849_-|protease	type VII secretion-associated serine protease mycosin	protease	V5UPA7	Mycobacterium_phage	35.3	1.0e-72
>prophage 195
NC_016948	Mycobacterium paraintracellulare, complete sequence	5501090	2758187	2762351	5501090		Mycobacterium_phage(100.0%)	1	NA	NA
WP_009954152.1|2758187_2762351_-	type VII secretion protein EccC	NA	V5UPA0	Mycobacterium_phage	26.2	9.2e-114
>prophage 196
NC_016948	Mycobacterium paraintracellulare, complete sequence	5501090	2781388	2782924	5501090		Staphylococcus_phage(100.0%)	1	NA	NA
WP_014711713.1|2781388_2782924_+	acyl-CoA synthetase	NA	A0A2H4PQM9	Staphylococcus_phage	23.0	8.5e-25
>prophage 197
NC_016948	Mycobacterium paraintracellulare, complete sequence	5501090	2789278	2790643	5501090		Chrysochromulina_ericina_virus(100.0%)	1	NA	NA
WP_014384801.1|2789278_2790643_+	DEAD/DEAH box helicase	NA	A0A0N9Q9J4	Chrysochromulina_ericina_virus	28.7	6.0e-38
>prophage 198
NC_016948	Mycobacterium paraintracellulare, complete sequence	5501090	2796933	2797743	5501090		Bacillus_phage(100.0%)	1	NA	NA
WP_036396576.1|2796933_2797743_+	SigB/SigF/SigG family RNA polymerase sigma factor	NA	A0A0E3T5M9	Bacillus_phage	30.6	1.8e-18
>prophage 199
NC_016948	Mycobacterium paraintracellulare, complete sequence	5501090	2827381	2828995	5501090		Catovirus(100.0%)	1	NA	NA
WP_014384824.1|2827381_2828995_-	acyl--CoA ligase	NA	A0A1V0SBX8	Catovirus	28.4	3.4e-08
>prophage 200
NC_016948	Mycobacterium paraintracellulare, complete sequence	5501090	2843432	2846126	5501090		Pithovirus(100.0%)	1	NA	NA
WP_139826551.1|2843432_2846126_-	ATP-binding cassette domain-containing protein	NA	W5SAS9	Pithovirus	27.5	1.1e-24
>prophage 201
NC_016948	Mycobacterium paraintracellulare, complete sequence	5501090	2863846	2864770	5501090		Acanthamoeba_polyphaga_mimivirus(100.0%)	1	NA	NA
WP_014384848.1|2863846_2864770_+	alpha/beta hydrolase	NA	A0A0G2YDK2	Acanthamoeba_polyphaga_mimivirus	36.9	1.2e-34
>prophage 202
NC_016948	Mycobacterium paraintracellulare, complete sequence	5501090	2869962	2871561	5501090		Tupanvirus(100.0%)	1	NA	NA
WP_014384851.1|2869962_2871561_+	acyl-CoA synthetase	NA	A0A2K9KZV5	Tupanvirus	26.2	3.6e-10
>prophage 203
NC_016948	Mycobacterium paraintracellulare, complete sequence	5501090	2890885	2892667	5501090		Acanthocystis_turfacea_Chlorella_virus(100.0%)	1	NA	NA
WP_014711780.1|2890885_2892667_+	protein kinase	NA	M1HKB5	Acanthocystis_turfacea_Chlorella_virus	33.3	3.4e-17
>prophage 204
NC_016948	Mycobacterium paraintracellulare, complete sequence	5501090	2896010	2929162	5501090		Tupanvirus(100.0%)	2	NA	NA
WP_009953549.1|2896010_2897816_-	N-acetylglutaminylglutamine amidotransferase	NA	A0A2K9L187	Tupanvirus	26.0	6.3e-27
WP_041784987.1|2897911_2929162_-	non-ribosomal peptide synthetase	NA	A0A2K9L3I8	Tupanvirus	27.4	1.7e-151
>prophage 205
NC_016948	Mycobacterium paraintracellulare, complete sequence	5501090	2934175	2934379	5501090		Lactococcus_phage(100.0%)	1	NA	NA
WP_009954002.1|2934175_2934379_+	cold-shock protein	NA	Q9AZD3	Lactococcus_phage	56.9	6.8e-15
>prophage 206
NC_016948	Mycobacterium paraintracellulare, complete sequence	5501090	2939051	2940221	5501090	integrase	Mycobacterium_phage(100.0%)	1	2938229:2938241	2946121:2946133
2938229:2938241	attL	GGCGGGCTCAAGC	NA	NA	NA	NA
WP_041784988.1|2939051_2940221_+|integrase	site-specific integrase	integrase	A0A097BXY4	Mycobacterium_phage	39.5	4.3e-61
WP_041784988.1|2939051_2940221_+|integrase	site-specific integrase	integrase	A0A097BXY4	Mycobacterium_phage	39.5	4.3e-61
2946121:2946133	attR	GGCGGGCTCAAGC	NA	NA	NA	NA
>prophage 207
NC_016948	Mycobacterium paraintracellulare, complete sequence	5501090	2944444	2947087	5501090		Mycobacterium_phage(100.0%)	1	NA	NA
WP_041784990.1|2944444_2947087_+	transglycosylase SLT domain-containing protein	NA	G8I4C9	Mycobacterium_phage	51.2	9.4e-48
>prophage 208
NC_016948	Mycobacterium paraintracellulare, complete sequence	5501090	2956538	2957555	5501090		Hokovirus(100.0%)	1	NA	NA
WP_080588018.1|2956538_2957555_-	hypothetical protein	NA	A0A1V0SGR7	Hokovirus	31.3	7.6e-30
>prophage 209
NC_016948	Mycobacterium paraintracellulare, complete sequence	5501090	2983620	2984754	5501090		Tupanvirus(100.0%)	1	NA	NA
WP_041785616.1|2983620_2984754_+	Zn-dependent alcohol dehydrogenase	NA	A0A2K9L339	Tupanvirus	29.2	3.5e-15
>prophage 210
NC_016948	Mycobacterium paraintracellulare, complete sequence	5501090	3007553	3009056	5501090		Catovirus(100.0%)	1	NA	NA
WP_014384944.1|3007553_3009056_-	acyl--CoA ligase	NA	A0A1V0SBX8	Catovirus	33.3	3.4e-10
>prophage 211
NC_016948	Mycobacterium paraintracellulare, complete sequence	5501090	3016249	3017461	5501090	transposase	Saccharomonospora_phage(100.0%)	1	NA	NA
WP_014384952.1|3016249_3017461_-|transposase	transposase	transposase	I4AZM3	Saccharomonospora_phage	48.8	6.0e-74
>prophage 212
NC_016948	Mycobacterium paraintracellulare, complete sequence	5501090	3021581	3023135	5501090		Staphylococcus_phage(100.0%)	1	NA	NA
WP_179960076.1|3021581_3023135_+	AMP-binding protein	NA	A0A2H4PQM9	Staphylococcus_phage	25.9	2.7e-26
>prophage 213
NC_016948	Mycobacterium paraintracellulare, complete sequence	5501090	3051174	3052815	5501090		Catovirus(100.0%)	1	NA	NA
WP_014384986.1|3051174_3052815_-	GMC family oxidoreductase N-terminal domain-containing protein	NA	A0A1V0S9J5	Catovirus	31.3	7.2e-54
>prophage 214
NC_016948	Mycobacterium paraintracellulare, complete sequence	5501090	3058502	3060068	5501090		Staphylococcus_phage(100.0%)	1	NA	NA
WP_014384994.1|3058502_3060068_-	AMP-binding protein	NA	A0A2H4PQM9	Staphylococcus_phage	27.5	9.3e-35
>prophage 215
NC_016948	Mycobacterium paraintracellulare, complete sequence	5501090	3072761	3074261	5501090		Hepacivirus(100.0%)	1	NA	NA
WP_014385011.1|3072761_3074261_-	long-chain fatty acid--CoA ligase	NA	Q75ZG1	Hepacivirus	29.5	1.6e-31
>prophage 216
NC_016948	Mycobacterium paraintracellulare, complete sequence	5501090	3131347	3132655	5501090		Deftia_phage(100.0%)	1	NA	NA
WP_051019742.1|3131347_3132655_+	ATP-binding protein	NA	C9DGK6	Deftia_phage	26.6	1.6e-08
>prophage 217
NC_016948	Mycobacterium paraintracellulare, complete sequence	5501090	3137608	3138902	5501090	transposase	Burkholderia_virus(100.0%)	1	NA	NA
WP_139826619.1|3137608_3138902_+|transposase	IS3 family transposase	transposase	Q8W6R2	Burkholderia_virus	48.4	2.4e-57
>prophage 218
NC_016948	Mycobacterium paraintracellulare, complete sequence	5501090	3142125	3148968	5501090		uncultured_Mediterranean_phage(25.0%)	7	NA	NA
WP_041785695.1|3142125_3142806_-	SMC-Scp complex subunit ScpB	NA	A0A1B1IVT7	uncultured_Mediterranean_phage	27.0	1.6e-07
WP_008257548.1|3142898_3143717_-	segregation/condensation protein A	NA	NA	NA	NA	NA
WP_008257550.1|3143713_3144577_-	ParA family protein	NA	Q8JL10	Natrialba_phage	36.9	1.5e-23
WP_014385079.1|3144811_3145561_+	O-methyltransferase	NA	NA	NA	NA	NA
WP_008257558.1|3145662_3146604_-	site-specific tyrosine recombinase XerD	NA	A0A0K2CP59	Brevibacillus_phage	25.6	6.6e-20
WP_014382726.1|3146600_3147224_-	NUDIX hydrolase	NA	NA	NA	NA	NA
WP_014382727.1|3147216_3148968_-	CTP synthase	NA	A0A1J0FA14	Only_Syngen_Nebraska_virus	45.8	4.7e-128
>prophage 219
NC_016948	Mycobacterium paraintracellulare, complete sequence	5501090	3157513	3161730	5501090	tRNA	Pectobacterium_phage(33.33%)	4	NA	NA
WP_009955608.1|3157513_3158776_-|tRNA	tyrosine--tRNA ligase	tRNA	A0A1L2CUL7	Pectobacterium_phage	37.7	5.9e-64
WP_014380308.1|3158868_3159513_-	DNA-3-methyladenine glycosylase	NA	NA	NA	NA	NA
WP_020188604.1|3159609_3160890_+	ammonium transporter	NA	H8ZJB2	Ostreococcus_tauri_virus	31.2	3.0e-39
WP_014382735.1|3160965_3161730_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	30.3	2.0e-19
>prophage 220
NC_016948	Mycobacterium paraintracellulare, complete sequence	5501090	3172887	3176624	5501090		Oenococcus_phage(50.0%)	3	NA	NA
WP_051019787.1|3172887_3174006_+	mandelate racemase	NA	Q6A202	Oenococcus_phage	23.9	1.5e-15
WP_179960077.1|3174096_3174783_+	ANTAR domain-containing protein	NA	NA	NA	NA	NA
WP_014385088.1|3174806_3176624_+	ABC-F family ATP-binding cassette domain-containing protein	NA	A0A2I4R674	Erysipelothrix_phage	25.5	4.2e-39
>prophage 221
NC_016948	Mycobacterium paraintracellulare, complete sequence	5501090	3182403	3195169	5501090		Paenibacillus_phage(100.0%)	2	NA	NA
WP_008257611.1|3182403_3188799_-	type I polyketide synthase	NA	D0R7J2	Paenibacillus_phage	29.8	5.7e-22
WP_014385091.1|3188779_3195169_-	type I polyketide synthase	NA	D0R7J2	Paenibacillus_phage	30.4	3.2e-25
>prophage 222
NC_016948	Mycobacterium paraintracellulare, complete sequence	5501090	3200553	3201747	5501090		Mycobacterium_phage(100.0%)	1	NA	NA
WP_014385095.1|3200553_3201747_-	acetylornithine transaminase	NA	A0A249XSK4	Mycobacterium_phage	27.0	2.5e-16
>prophage 223
NC_016948	Mycobacterium paraintracellulare, complete sequence	5501090	3207408	3208452	5501090	tRNA	Orpheovirus(100.0%)	1	NA	NA
WP_014380327.1|3207408_3208452_-|tRNA	phenylalanine--tRNA ligase subunit alpha	tRNA	A0A2I2L4E3	Orpheovirus	37.5	5.1e-29
>prophage 224
NC_016948	Mycobacterium paraintracellulare, complete sequence	5501090	3213146	3217566	5501090	tRNA	Vibrio_phage(50.0%)	2	NA	NA
WP_026071357.1|3213146_3213752_-	translation initiation factor IF-3	NA	A0A2I7S9Q1	Vibrio_phage	34.5	1.6e-11
WP_080552541.1|3214257_3217566_+|tRNA	bifunctional lysylphosphatidylglycerol synthetase/lysine--tRNA ligase LysX	tRNA	A0A1V0SIS0	Klosneuvirus	34.8	7.4e-74
>prophage 225
NC_016948	Mycobacterium paraintracellulare, complete sequence	5501090	3223696	3225067	5501090		Pandoravirus(100.0%)	1	NA	NA
WP_009954195.1|3223696_3225067_+	cytochrome P450	NA	S4VQU1	Pandoravirus	23.0	3.8e-16
>prophage 226
NC_016948	Mycobacterium paraintracellulare, complete sequence	5501090	3229196	3232947	5501090		uncultured_Mediterranean_phage(50.0%)	2	NA	NA
WP_014385103.1|3229196_3232115_-	excinuclease ABC subunit UvrA	NA	A0A1B1IVR3	uncultured_Mediterranean_phage	53.2	1.2e-293
WP_041785038.1|3232248_3232947_+	MBL fold metallo-hydrolase	NA	A0A221J762	Mycobacterium_phage	69.8	9.9e-13
>prophage 227
NC_016948	Mycobacterium paraintracellulare, complete sequence	5501090	3239285	3248185	5501090		Bodo_saltans_virus(25.0%)	8	NA	NA
WP_014380346.1|3239285_3241325_-	serine/threonine protein kinase	NA	A0A2H4UVE2	Bodo_saltans_virus	28.2	5.1e-17
WP_179960079.1|3241479_3244077_+	FHA domain-containing protein	NA	A0A2R8FG22	Brazilian_cedratvirus	32.8	3.0e-30
WP_014711906.1|3244171_3244612_+	DUF402 domain-containing protein	NA	NA	NA	NA	NA
WP_014385108.1|3244623_3244785_-	hypothetical protein	NA	NA	NA	NA	NA
WP_008257666.1|3244871_3245513_+	chemotaxis protein CheB	NA	NA	NA	NA	NA
WP_008257667.1|3245518_3246517_+	non-homologous end-joining DNA ligase	NA	G8GER3	unidentified_phage	29.4	6.2e-08
WP_008257668.1|3246516_3247407_+	non-homologous end-joining DNA ligase	NA	NA	NA	NA	NA
WP_008257669.1|3247399_3248185_+	Fpg/Nei family DNA glycosylase	NA	G3MA33	Bacillus_virus	24.4	1.0e-10
>prophage 228
NC_016948	Mycobacterium paraintracellulare, complete sequence	5501090	3253633	3258935	5501090		Listeria_phage(50.0%)	4	NA	NA
WP_008257678.1|3253633_3256294_-	DNA polymerase I	NA	A0A060AFQ3	Listeria_phage	30.6	1.2e-42
WP_009954952.1|3256458_3256941_+	Zn-ribbon domain-containing OB-fold protein	NA	NA	NA	NA	NA
WP_008257683.1|3256946_3258149_+	lipid-transfer protein	NA	NA	NA	NA	NA
WP_008257686.1|3258320_3258935_-	ANTAR domain-containing response regulator	NA	Q6XM27	Feldmannia_irregularis_virus	31.7	3.9e-05
>prophage 229
NC_016948	Mycobacterium paraintracellulare, complete sequence	5501090	3264538	3266152	5501090		Paramecium_bursaria_Chlorella_virus(100.0%)	1	NA	NA
WP_044059241.1|3264538_3266152_+	thiol reductant ABC exporter subunit CydD	NA	M1H3A1	Paramecium_bursaria_Chlorella_virus	34.3	4.6e-05
>prophage 230
NC_016948	Mycobacterium paraintracellulare, complete sequence	5501090	3276505	3277324	5501090		Acinetobacter_phage(100.0%)	1	NA	NA
WP_008257758.1|3276505_3277324_-	indole-3-glycerol phosphate synthase TrpC	NA	A0A0P0IR83	Acinetobacter_phage	36.9	3.6e-30
>prophage 231
NC_016948	Mycobacterium paraintracellulare, complete sequence	5501090	3285352	3286486	5501090		Faustovirus(100.0%)	1	NA	NA
WP_014385123.1|3285352_3286486_-	histidinol-phosphate transaminase	NA	A0A1X7QHI1	Faustovirus	29.6	4.8e-17
>prophage 232
NC_016948	Mycobacterium paraintracellulare, complete sequence	5501090	3307264	3312586	5501090		Klosneuvirus(33.33%)	4	NA	NA
WP_014385135.1|3307264_3308569_-	adenosylmethionine--8-amino-7-oxononanoate transaminase	NA	A0A1V0SKB7	Klosneuvirus	27.8	6.8e-15
WP_008257820.1|3308631_3309069_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014385136.1|3309401_3310298_+	NlpC/P60 family peptidoglycan-binding protein RipD	NA	A0A1J0GW44	Streptomyces_phage	34.9	4.7e-07
WP_014385137.1|3310399_3312586_+	acyltransferase	NA	A0A166XZF2	Gordonia_phage	29.2	6.0e-56
>prophage 233
NC_016948	Mycobacterium paraintracellulare, complete sequence	5501090	3327237	3334531	5501090		Catovirus(50.0%)	5	NA	NA
WP_014385145.1|3327237_3329064_-	long-chain fatty acid--CoA ligase	NA	A0A1V0SBX8	Catovirus	24.1	1.6e-41
WP_041785045.1|3329164_3330037_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_008257853.1|3330015_3330405_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_008257855.1|3330466_3330928_+	PPOX class F420-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_014385147.1|3330997_3334531_-	DNA polymerase III subunit alpha	NA	Q8W6C3	Saccharomonospora_phage	60.4	0.0e+00
>prophage 234
NC_016948	Mycobacterium paraintracellulare, complete sequence	5501090	3342881	3392110	5501090	tRNA	Tupanvirus(75.0%)	7	NA	NA
WP_014385152.1|3342881_3345995_-|tRNA	isoleucine--tRNA ligase	tRNA	A0A2P1ELB8	Moumouvirus	34.8	3.0e-162
WP_008257871.1|3346201_3346447_-	hypothetical protein	NA	NA	NA	NA	NA
WP_008257872.1|3346998_3348123_-	nitronate monooxygenase	NA	NA	NA	NA	NA
WP_014385153.1|3348192_3348768_-	carboxymuconolactone decarboxylase family protein	NA	NA	NA	NA	NA
WP_014385154.1|3348889_3373663_-	non-ribosomal peptide synthetase	NA	A0A2K9KZV5	Tupanvirus	26.1	4.6e-144
WP_014385155.1|3374192_3381851_-	non-ribosomal peptide synthetase	NA	A0A2K9KZV5	Tupanvirus	20.7	5.8e-98
WP_014385156.1|3381847_3392110_-	non-ribosomal peptide synthetase	NA	A0A2K9KZV5	Tupanvirus	24.9	1.6e-71
>prophage 235
NC_016948	Mycobacterium paraintracellulare, complete sequence	5501090	3399741	3400689	5501090		Anomala_cuprea_entomopoxvirus(100.0%)	1	NA	NA
WP_026071342.1|3399741_3400689_+	daunorubicin resistance protein DrrA family ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	29.7	4.3e-19
>prophage 236
NC_016948	Mycobacterium paraintracellulare, complete sequence	5501090	3403982	3412131	5501090		Ostreococcus_tauri_virus(28.57%)	8	NA	NA
WP_041785054.1|3403982_3404945_-	GDP-L-fucose synthase	NA	D1LW79	Prochlorococcus_phage	50.3	5.8e-88
WP_014380402.1|3404952_3405975_-	GDP-mannose 4,6-dehydratase	NA	M1IBC3	Acanthocystis_turfacea_Chlorella_virus	56.9	1.1e-105
WP_041785055.1|3406305_3407196_-	hypothetical protein	NA	H8ZJG6	Ostreococcus_tauri_virus	33.0	1.4e-19
WP_014385164.1|3407407_3408181_+	glucose-1-phosphate cytidylyltransferase	NA	NA	NA	NA	NA
WP_014385165.1|3408162_3409257_+	CDP-glucose 4,6-dehydratase	NA	J7Q7J8	Aeropyrum_coil-shaped_virus	27.7	7.4e-15
WP_014385166.1|3409253_3409805_+	dTDP-4-dehydrorhamnose 3,5-epimerase family protein	NA	I7HJC4	Enterobacteria_phage	38.6	2.2e-23
WP_014385167.1|3409822_3411025_+	methyltransferase domain-containing protein	NA	A0A1V0SJ68	Klosneuvirus	27.7	1.4e-22
WP_014385168.1|3411021_3412131_+	DegT/DnrJ/EryC1/StrS family aminotransferase	NA	C7U074	Ostreococcus_tauri_virus	26.9	2.4e-21
>prophage 237
NC_016948	Mycobacterium paraintracellulare, complete sequence	5501090	3416164	3427562	5501090		Shahe_endorna-like_virus(42.86%)	10	NA	NA
WP_179960122.1|3416164_3417130_+	GDP-mannose 4,6-dehydratase	NA	Q58M98	Prochlorococcus_phage	44.1	1.1e-70
WP_014382797.1|3417126_3418212_+	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_014385173.1|3418470_3419727_+	glycosyltransferase	NA	A0A1L3KK54	Shahe_endorna-like_virus	37.1	2.5e-06
WP_014380417.1|3419734_3420514_-	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_029384366.1|3420610_3421402_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_009953300.1|3421529_3422336_-	class I SAM-dependent methyltransferase	NA	A0A2R8FDY2	Brazilian_cedratvirus	53.1	7.6e-57
WP_080588027.1|3422431_3423718_-	glycosyltransferase	NA	A0A1L3KK54	Shahe_endorna-like_virus	44.4	1.2e-08
WP_041785057.1|3424131_3425400_-	glycosyltransferase	NA	A0A1L3KK54	Shahe_endorna-like_virus	38.7	4.3e-06
WP_026071337.1|3425492_3426299_-	class I SAM-dependent methyltransferase	NA	A0A2R8FDY2	Brazilian_cedratvirus	52.6	9.2e-55
WP_014385176.1|3426452_3427562_-	NAD-dependent epimerase/dehydratase family protein	NA	M1I1Z9	Acanthocystis_turfacea_Chlorella_virus	24.1	2.8e-17
>prophage 238
NC_016948	Mycobacterium paraintracellulare, complete sequence	5501090	3443287	3455156	5501090		Tupanvirus(100.0%)	2	NA	NA
WP_014385184.1|3443287_3453568_+	non-ribosomal peptide synthetase	NA	A0A2K9L3I8	Tupanvirus	30.3	2.5e-59
WP_014385185.1|3453674_3455156_-	HAMP domain-containing histidine kinase	NA	A0A2K9L0Z8	Tupanvirus	28.7	1.2e-07
>prophage 239
NC_016948	Mycobacterium paraintracellulare, complete sequence	5501090	3461890	3462658	5501090		Trichoplusia_ni_ascovirus(100.0%)	1	NA	NA
WP_009953266.1|3461890_3462658_-	beta-ketoacyl-ACP reductase	NA	Q06VL0	Trichoplusia_ni_ascovirus	25.1	5.2e-07
>prophage 240
NC_016948	Mycobacterium paraintracellulare, complete sequence	5501090	3466951	3467686	5501090		Gordonia_phage(100.0%)	1	NA	NA
WP_008257972.1|3466951_3467686_-	NlpC/P60 family peptidoglycan endopeptidase RipB	NA	A0A0K0NL58	Gordonia_phage	42.7	3.1e-17
>prophage 241
NC_016948	Mycobacterium paraintracellulare, complete sequence	5501090	3473996	3476868	5501090		Tupanvirus(50.0%)	3	NA	NA
WP_014385196.1|3473996_3475634_-	ABC-F family ATP-binding cassette domain-containing protein	NA	A0A2K9L0W2	Tupanvirus	23.5	8.2e-34
WP_008257990.1|3475661_3476471_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_009953261.1|3476514_3476868_-	thioredoxin	NA	A0A2H4P7M6	Pseudomonas_phage	33.7	6.5e-13
>prophage 242
NC_016948	Mycobacterium paraintracellulare, complete sequence	5501090	3523244	3531887	5501090		Mollivirus(20.0%)	10	NA	NA
WP_014385231.1|3523244_3524015_+	SDR family oxidoreductase	NA	A0A0M4JSW6	Mollivirus	25.2	1.1e-07
WP_014385232.1|3524049_3524544_+	peptide-methionine (R)-S-oxide reductase MsrB	NA	NA	NA	NA	NA
WP_041297910.1|3524540_3525089_+	peptide-methionine (S)-S-oxide reductase MsrA	NA	NA	NA	NA	NA
WP_041785082.1|3525159_3526866_+	cytochrome c oxidase subunit I	NA	NA	NA	NA	NA
WP_014385235.1|3526928_3527879_+	FAD-dependent oxidoreductase	NA	A0A2K9L4X0	Tupanvirus	36.9	9.9e-48
WP_014385236.1|3528453_3528987_+	DUF421 domain-containing protein	NA	NA	NA	NA	NA
WP_008258091.1|3528976_3529324_-	metal-sulfur cluster assembly factor	NA	NA	NA	NA	NA
WP_014385237.1|3529298_3529799_-	SUF system NifU family Fe-S cluster assembly protein	NA	A0A0K1LSF9	Mycobacterium_phage	45.5	3.7e-22
WP_014385238.1|3529795_3531112_-	cysteine desulfurase	NA	Q2XUY6	environmental_halophage	45.6	1.1e-100
WP_009955752.1|3531113_3531887_-	Fe-S cluster assembly ATPase SufC	NA	W8CYL7	Bacillus_phage	28.3	2.1e-08
>prophage 243
NC_016948	Mycobacterium paraintracellulare, complete sequence	5501090	3537150	3538086	5501090		Staphylococcus_phage(100.0%)	1	NA	NA
WP_041785083.1|3537150_3538086_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	29.3	5.7e-16
>prophage 244
NC_016948	Mycobacterium paraintracellulare, complete sequence	5501090	3546162	3551761	5501090		Cyanophage(33.33%)	6	NA	NA
WP_009955768.1|3546162_3547707_+	glucose-6-phosphate dehydrogenase	NA	M4SIY3	Cyanophage	35.2	1.0e-73
WP_008258116.1|3547706_3548618_+	glucose-6-phosphate dehydrogenase assembly protein OpcA	NA	NA	NA	NA	NA
WP_014385245.1|3548614_3549370_+	6-phosphogluconolactonase	NA	NA	NA	NA	NA
WP_009955772.1|3549415_3549814_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014385246.1|3549827_3550757_+	histone deacetylase family protein	NA	A0A2K9KZC4	Tupanvirus	35.0	3.2e-43
WP_009951912.1|3550771_3551761_-	aldo/keto reductase	NA	A0A1V0SKP9	Klosneuvirus	25.8	6.5e-10
>prophage 245
NC_016948	Mycobacterium paraintracellulare, complete sequence	5501090	3566590	3569481	5501090		Staphylococcus_phage(50.0%)	2	NA	NA
WP_041785089.1|3566590_3568210_+	bile acid CoA ligase	NA	A0A2H4PQM9	Staphylococcus_phage	28.1	1.8e-28
WP_014385255.1|3568209_3569481_+	alpha/beta hydrolase	NA	A0A068F2G2	Mycobacterium_phage	39.1	1.5e-35
>prophage 246
NC_016948	Mycobacterium paraintracellulare, complete sequence	5501090	3573577	3575562	5501090		Streptococcus_phage(50.0%)	2	NA	NA
WP_009956168.1|3573577_3574654_-	YvcK family protein	NA	A1IMD5	Streptococcus_phage	36.2	3.4e-36
WP_009956169.1|3574650_3575562_-	RNase adapter RapZ	NA	A0A0R8VB27	Thermobifida_phage	34.2	1.7e-09
>prophage 247
NC_016948	Mycobacterium paraintracellulare, complete sequence	5501090	3581449	3587383	5501090		Staphylococcus_phage(100.0%)	6	NA	NA
WP_014385264.1|3581449_3581932_-	6,7-dimethyl-8-ribityllumazine synthase	NA	A0A2H4PQS3	Staphylococcus_phage	41.4	6.8e-13
WP_008258174.1|3581981_3583259_-	bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II	NA	A0A2H4PQS2	Staphylococcus_phage	45.6	3.3e-91
WP_014385265.1|3583382_3583982_-	riboflavin synthase	NA	A0A2H4PQS5	Staphylococcus_phage	41.0	6.9e-31
WP_008258177.1|3584100_3584808_+	LppX_LprAFG lipoprotein	NA	NA	NA	NA	NA
WP_008258179.1|3584804_3586361_+	MFS transporter	NA	NA	NA	NA	NA
WP_014385266.1|3586357_3587383_-	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	NA	A0A2H4PQS8	Staphylococcus_phage	34.7	3.7e-40
>prophage 248
NC_016948	Mycobacterium paraintracellulare, complete sequence	5501090	3595229	3602053	5501090		Acanthamoeba_polyphaga_mimivirus(25.0%)	7	NA	NA
WP_008258189.1|3595229_3596195_+	alpha/beta hydrolase	NA	A0A2L2DMU8	Acanthamoeba_polyphaga_mimivirus	31.2	8.5e-23
WP_036429282.1|3596241_3597729_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_008258191.1|3597749_3598316_+	pyridoxamine 5'-phosphate oxidase family protein	NA	NA	NA	NA	NA
WP_008258192.1|3598391_3599603_-	methionine adenosyltransferase	NA	A0A2H4PQS6	Staphylococcus_phage	54.7	8.6e-113
WP_008258194.1|3599697_3600960_-	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC	NA	Q9HH70	Methanothermobacter_phage	33.9	2.2e-39
WP_008258195.1|3600981_3601308_-	DNA-directed RNA polymerase subunit omega	NA	NA	NA	NA	NA
WP_085976452.1|3601381_3602053_-	guanylate kinase	NA	K4JYM5	Abalone_herpesvirus	34.7	3.2e-16
>prophage 249
NC_016948	Mycobacterium paraintracellulare, complete sequence	5501090	3607755	3611649	5501090		Halovirus(50.0%)	4	NA	NA
WP_008258201.1|3607755_3608892_-	glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit	NA	R4TGJ8	Halovirus	31.5	1.9e-37
WP_014385272.1|3608888_3609404_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014385273.1|3609400_3610693_-	dihydroorotase	NA	NA	NA	NA	NA
WP_014385274.1|3610689_3611649_-	aspartate carbamoyltransferase catalytic subunit	NA	M1I6M4	Paramecium_bursaria_Chlorella_virus	36.7	1.4e-28
>prophage 250
NC_016948	Mycobacterium paraintracellulare, complete sequence	5501090	3617130	3617880	5501090		Bacillus_virus(100.0%)	1	NA	NA
WP_008258209.1|3617130_3617880_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	33.3	2.0e-27
>prophage 251
NC_016948	Mycobacterium paraintracellulare, complete sequence	5501090	3629985	3631191	5501090		Pandoravirus(100.0%)	1	NA	NA
WP_008258240.1|3629985_3631191_-	chorismate synthase	NA	A0A291AU41	Pandoravirus	36.1	2.0e-45
>prophage 252
NC_016948	Mycobacterium paraintracellulare, complete sequence	5501090	3635496	3641992	5501090	tRNA	Tupanvirus(50.0%)	6	NA	NA
WP_014385286.1|3635496_3638199_-|tRNA	alanine--tRNA ligase	tRNA	A0A2K9L1X7	Tupanvirus	35.4	3.0e-65
WP_008258256.1|3638330_3638720_-	YjbQ family protein	NA	NA	NA	NA	NA
WP_014385287.1|3638884_3639505_+	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
WP_008258260.1|3639658_3640282_+	hypothetical protein	NA	NA	NA	NA	NA
WP_009955916.1|3640295_3640631_-	hypothetical protein	NA	NA	NA	NA	NA
WP_038536736.1|3640627_3641992_-	replication-associated recombination protein A	NA	G3MBE0	Bacillus_virus	43.6	8.0e-83
>prophage 253
NC_016948	Mycobacterium paraintracellulare, complete sequence	5501090	3653696	3656954	5501090		Rhodococcus_phage(50.0%)	4	NA	NA
WP_008258283.1|3653696_3654575_+	neutral zinc metallopeptidase	NA	A0A1I9SA48	Rhodococcus_phage	47.1	1.6e-52
WP_009957662.1|3654642_3655524_-	dihydrodipicolinate synthase family protein	NA	NA	NA	NA	NA
WP_008258286.1|3655560_3656358_-	aldolase	NA	NA	NA	NA	NA
WP_008258289.1|3656429_3656954_+	helix-turn-helix domain-containing protein	NA	I3VYZ1	Thermoanaerobacterium_phage	37.8	5.7e-05
>prophage 254
NC_016948	Mycobacterium paraintracellulare, complete sequence	5501090	3664964	3682604	5501090		Klosneuvirus(33.33%)	13	NA	NA
WP_009954372.1|3664964_3665855_+	peptidylprolyl isomerase	NA	A0A1V0SCU1	Indivirus	34.8	1.4e-08
WP_008258303.1|3665868_3668247_-	RelA/SpoT family protein	NA	NA	NA	NA	NA
WP_041785094.1|3668382_3668925_-	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	34.3	7.7e-13
WP_139826610.1|3668932_3670567_-	hypothetical protein	NA	NA	NA	NA	NA
WP_038538709.1|3670629_3671928_-	protein translocase subunit SecF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	30.0	8.2e-21
WP_014385301.1|3671932_3673744_-	protein translocase subunit SecD	NA	NA	NA	NA	NA
WP_008258310.1|3673856_3674183_-	preprotein translocase subunit YajC	NA	NA	NA	NA	NA
WP_041785721.1|3674394_3675735_+	4-aminobutyrate--2-oxoglutarate transaminase	NA	A0A1V0SKB7	Klosneuvirus	26.0	6.3e-24
WP_014385304.1|3675874_3679399_+	carboxylic acid reductase	NA	A0A1V0SBX8	Catovirus	22.5	4.0e-17
WP_008258315.1|3679462_3680155_-	hypothetical protein	NA	NA	NA	NA	NA
WP_008258316.1|3680284_3680671_-	DUF1304 domain-containing protein	NA	NA	NA	NA	NA
WP_036459436.1|3680769_3681456_-	hypothetical protein	NA	NA	NA	NA	NA
WP_009956162.1|3681548_3682604_-	Holliday junction branch migration DNA helicase RuvB	NA	A0A127AWE7	Bacillus_phage	23.9	1.6e-06
>prophage 255
NC_016948	Mycobacterium paraintracellulare, complete sequence	5501090	3685996	3687574	5501090		Heterosigma_akashiwo_virus(100.0%)	1	NA	NA
WP_014385311.1|3685996_3687574_+	polyamine aminopropyltransferase	NA	A0A1C9C533	Heterosigma_akashiwo_virus	32.2	3.3e-08
>prophage 256
NC_016948	Mycobacterium paraintracellulare, complete sequence	5501090	3696761	3698837	5501090	tRNA	Tupanvirus(100.0%)	1	NA	NA
WP_009953630.1|3696761_3698837_-|tRNA	threonine--tRNA ligase	tRNA	A0A2K9L6B6	Tupanvirus	36.0	2.1e-103
>prophage 257
NC_016948	Mycobacterium paraintracellulare, complete sequence	5501090	3724389	3725937	5501090		Staphylococcus_phage(100.0%)	1	NA	NA
WP_014385337.1|3724389_3725937_+	AMP-binding protein	NA	A0A2H4PQM9	Staphylococcus_phage	26.2	8.9e-30
>prophage 258
NC_016948	Mycobacterium paraintracellulare, complete sequence	5501090	3730038	3736542	5501090	integrase,transposase	Mycobacterium_phage(75.0%)	7	3729054:3729081	3736725:3736752
3729054:3729081	attL	ACTGGTTCAATCCCAGTATCGCGCACCA	NA	NA	NA	NA
WP_014385341.1|3730038_3730236_+	helix-turn-helix domain-containing protein	NA	A0A097EWI6	Mycobacterium_phage	67.7	3.2e-17
WP_014385342.1|3730257_3730494_+	hypothetical protein	NA	NA	NA	NA	NA
WP_080588071.1|3730566_3730815_+	hypothetical protein	NA	NA	NA	NA	NA
WP_139826619.1|3731072_3732367_-|transposase	IS3 family transposase	transposase	Q8W6R2	Burkholderia_virus	48.4	2.4e-57
WP_014385345.1|3733618_3734170_-	AAA family ATPase	NA	NA	NA	NA	NA
WP_014385347.1|3734629_3734827_-	excisionase family DNA-binding protein	NA	A0A2P1CHK7	Mycobacterium_phage	82.5	1.7e-18
WP_014385348.1|3735348_3736542_-|integrase	tyrosine-type recombinase/integrase	integrase	A0A1D8EV90	Mycobacterium_phage	37.9	2.8e-60
3736725:3736752	attR	ACTGGTTCAATCCCAGTATCGCGCACCA	NA	NA	NA	NA
>prophage 259
NC_016948	Mycobacterium paraintracellulare, complete sequence	5501090	3755545	3756316	5501090		Mycobacterium_phage(100.0%)	1	NA	NA
WP_014385366.1|3755545_3756316_+	hypothetical protein	NA	A0A249XSS8	Mycobacterium_phage	41.2	8.4e-13
>prophage 260
NC_016948	Mycobacterium paraintracellulare, complete sequence	5501090	3780903	3781368	5501090		Streptomyces_phage(100.0%)	1	NA	NA
WP_014385376.1|3780903_3781368_-	dUTP diphosphatase	NA	A0A2L1IVN2	Streptomyces_phage	49.7	2.0e-30
>prophage 261
NC_016948	Mycobacterium paraintracellulare, complete sequence	5501090	3785020	3800693	5501090		Cyanophage(33.33%)	19	NA	NA
WP_026071295.1|3785020_3786526_+	RNA polymerase sigma factor	NA	M4SMP8	Cyanophage	34.6	2.6e-42
WP_041785112.1|3786661_3787078_+	RidA family protein	NA	NA	NA	NA	NA
WP_038536870.1|3787023_3787395_-	DUF952 domain-containing protein	NA	NA	NA	NA	NA
WP_008258551.1|3787518_3787704_+	hypothetical protein	NA	NA	NA	NA	NA
WP_009955740.1|3787768_3788770_+	YihY/virulence factor BrkB family protein	NA	NA	NA	NA	NA
WP_008258553.1|3788770_3789010_-	DUF3039 domain-containing protein	NA	A0A059VGG3	Mycobacterium_phage	46.1	1.3e-12
WP_008258554.1|3789080_3789527_+	DUF3099 domain-containing protein	NA	NA	NA	NA	NA
WP_050782802.1|3789662_3790652_+	sigma-70 family RNA polymerase sigma factor SigB	NA	M4SMP8	Cyanophage	36.9	5.1e-39
WP_008258556.1|3790781_3791471_+	metal-dependent transcriptional regulator	NA	NA	NA	NA	NA
WP_014385379.1|3791493_3792555_-	DUF4192 domain-containing protein	NA	NA	NA	NA	NA
WP_009954997.1|3792668_3794084_+	Si-specific NAD(P)(+) transhydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	27.6	5.4e-42
WP_014385380.1|3794169_3795006_-	trypsin-like peptidase domain-containing protein	NA	NA	NA	NA	NA
WP_008258561.1|3795236_3796208_+	PAC2 family protein	NA	NA	NA	NA	NA
WP_008258562.1|3796268_3797300_+	alpha/beta hydrolase	NA	A0A2K9VI81	Mycobacterium_phage	29.6	2.6e-17
WP_009955002.1|3797347_3798034_+	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA	NA
WP_009955003.1|3798058_3798544_-	FABP family protein	NA	NA	NA	NA	NA
WP_008258565.1|3798578_3799043_-	transcriptional repressor NrdR	NA	NA	NA	NA	NA
WP_008258566.1|3799195_3799690_-	LysM peptidoglycan-binding domain-containing protein	NA	NA	NA	NA	NA
WP_008258568.1|3799982_3800693_+	repressor LexA	NA	A0A1B1P7Q3	Bacillus_phage	49.2	8.0e-10
>prophage 262
NC_016948	Mycobacterium paraintracellulare, complete sequence	5501090	3813975	3815028	5501090		Mycobacterium_phage(100.0%)	1	NA	NA
WP_008258595.1|3813975_3815028_-	recombinase RecA	NA	A0A2D1GPX2	Mycobacterium_phage	73.7	2.7e-131
>prophage 263
NC_016948	Mycobacterium paraintracellulare, complete sequence	5501090	3822642	3825147	5501090		Mycobacterium_phage(100.0%)	1	NA	NA
WP_193375231.1|3822642_3825147_-	DNA translocase FtsK	NA	S5VNE3	Mycobacterium_phage	58.6	1.8e-112
>prophage 264
NC_016948	Mycobacterium paraintracellulare, complete sequence	5501090	3830107	3834308	5501090		Gordonia_phage(66.67%)	5	NA	NA
WP_036455230.1|3830107_3830860_-	FAD-dependent thymidylate synthase	NA	A0A166Y9A6	Gordonia_phage	55.9	1.9e-49
WP_014385399.1|3830909_3832121_-	winged helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_051019745.1|3832173_3832908_-	cell division protein DivIVA	NA	NA	NA	NA	NA
WP_041785115.1|3833007_3833511_-	dihydrofolate reductase	NA	A0A218KC58	Bacillus_phage	43.5	1.5e-18
WP_014380625.1|3833507_3834308_-	thymidylate synthase	NA	A0A1B3AY68	Gordonia_phage	68.2	6.0e-107
>prophage 265
NC_016948	Mycobacterium paraintracellulare, complete sequence	5501090	3857550	3858870	5501090		Acanthamoeba_polyphaga_lentillevirus(100.0%)	1	NA	NA
WP_085978384.1|3857550_3858870_-	insulinase family protein	NA	J3IZ03	Acanthamoeba_polyphaga_lentillevirus	24.1	5.4e-28
>prophage 266
NC_016948	Mycobacterium paraintracellulare, complete sequence	5501090	3877292	3880064	5501090		Bodo_saltans_virus(100.0%)	1	NA	NA
WP_041785118.1|3877292_3880064_-	translation initiation factor IF-2	NA	A0A2H4UTS4	Bodo_saltans_virus	23.8	3.2e-22
>prophage 267
NC_016948	Mycobacterium paraintracellulare, complete sequence	5501090	3885502	3887110	5501090		Mycobacterium_phage(100.0%)	1	NA	NA
WP_041785119.1|3885502_3887110_-	MFS transporter	NA	A0A0M3UL24	Mycobacterium_phage	33.3	9.5e-43
>prophage 268
NC_016948	Mycobacterium paraintracellulare, complete sequence	5501090	3895373	3896753	5501090		Erysipelothrix_phage(100.0%)	1	NA	NA
WP_008258759.1|3895373_3896753_+	mycothione reductase	NA	A0A2K5B2C5	Erysipelothrix_phage	25.4	1.3e-32
>prophage 269
NC_016948	Mycobacterium paraintracellulare, complete sequence	5501090	3901656	3905441	5501090		Mycobacterium_phage(33.33%)	4	NA	NA
WP_038536960.1|3901656_3902616_+	PPE family protein	NA	V5UPR1	Mycobacterium_phage	31.8	4.5e-08
WP_014385437.1|3902587_3903367_-	3-oxoacyl-ACP reductase	NA	A0A0M4JSW6	Mollivirus	33.8	1.6e-08
WP_014385438.1|3903370_3904735_-	aldehyde dehydrogenase	NA	NA	NA	NA	NA
WP_014385439.1|3904736_3905441_-	gamma-glutamyl-gamma-aminobutyrate hydrolase family protein	NA	A0A2P9FI75	Pseudomonas_phage	47.0	5.1e-09
>prophage 270
NC_016948	Mycobacterium paraintracellulare, complete sequence	5501090	3926214	3927054	5501090		Trichoplusia_ni_ascovirus(100.0%)	1	NA	NA
WP_008258798.1|3926214_3927054_+	SDR family oxidoreductase	NA	A0A2N9QUX2	Trichoplusia_ni_ascovirus	46.8	5.3e-61
>prophage 271
NC_016948	Mycobacterium paraintracellulare, complete sequence	5501090	3931014	3932193	5501090		Tupanvirus(100.0%)	1	NA	NA
WP_014385454.1|3931014_3932193_-	phosphatidylserine decarboxylase	NA	A0A2K9L169	Tupanvirus	29.8	1.9e-32
>prophage 272
NC_016948	Mycobacterium paraintracellulare, complete sequence	5501090	3937447	3938344	5501090		Brevibacillus_phage(100.0%)	1	NA	NA
WP_008258813.1|3937447_3938344_-	tyrosine recombinase XerC	NA	A0A0K2CP59	Brevibacillus_phage	27.3	4.1e-19
>prophage 273
NC_016948	Mycobacterium paraintracellulare, complete sequence	5501090	3949175	3949895	5501090		Phaeocystis_globosa_virus(100.0%)	1	NA	NA
WP_009955194.1|3949175_3949895_-	ribonuclease HII	NA	R4THQ2	Phaeocystis_globosa_virus	28.4	7.6e-08
>prophage 274
NC_016948	Mycobacterium paraintracellulare, complete sequence	5501090	3955276	3956164	5501090		Erythrobacter_phage(100.0%)	1	NA	NA
WP_009955186.1|3955276_3956164_+	D-alanyl-D-alanine carboxypeptidase	NA	A0A1P8VVG5	Erythrobacter_phage	35.1	5.3e-11
>prophage 275
NC_016948	Mycobacterium paraintracellulare, complete sequence	5501090	3962471	3964235	5501090		Saccharomonospora_phage(100.0%)	1	NA	NA
WP_014385468.1|3962471_3964235_+	DEAD/DEAH box helicase	NA	I4AZM6	Saccharomonospora_phage	38.4	1.3e-88
>prophage 276
NC_016948	Mycobacterium paraintracellulare, complete sequence	5501090	3969553	3970885	5501090		uncultured_phage(100.0%)	1	NA	NA
WP_014382983.1|3969553_3970885_-	signal recognition particle-docking protein FtsY	NA	D6PHS7	uncultured_phage	37.1	4.5e-14
>prophage 277
NC_016948	Mycobacterium paraintracellulare, complete sequence	5501090	3976304	3977865	5501090		Bacillus_phage(50.0%)	2	NA	NA
WP_009956339.1|3976304_3977153_-	DNA-formamidopyrimidine glycosylase	NA	F8WPX6	Bacillus_phage	25.6	2.8e-17
WP_014385469.1|3977157_3977865_-	ribonuclease III	NA	A0A2K9R4Y7	Dishui_lake_phycodnavirus	36.8	6.3e-23
>prophage 278
NC_016948	Mycobacterium paraintracellulare, complete sequence	5501090	3982810	3987846	5501090		uncultured_Mediterranean_phage(33.33%)	6	NA	NA
WP_009953984.1|3982810_3983293_-	pantetheine-phosphate adenylyltransferase	NA	A0A1B1IVQ3	uncultured_Mediterranean_phage	31.2	1.6e-17
WP_008258961.1|3983468_3984023_-	16S rRNA (guanine(966)-N(2))-methyltransferase RsmD	NA	NA	NA	NA	NA
WP_008258963.1|3984033_3984666_-	vitamin K epoxide reductase family protein	NA	NA	NA	NA	NA
WP_041785129.1|3984662_3985430_-	DsbA family protein	NA	NA	NA	NA	NA
WP_009955165.1|3985525_3986644_-	alpha/beta hydrolase	NA	M1PGN2	Moumouvirus	34.6	1.3e-30
WP_161807802.1|3987000_3987846_+	aldo/keto reductase	NA	A0A2H4PQR8	Staphylococcus_phage	42.2	1.2e-52
>prophage 279
NC_016948	Mycobacterium paraintracellulare, complete sequence	5501090	4000390	4001074	5501090		Pandoravirus(100.0%)	1	NA	NA
WP_014380726.1|4000390_4001074_-	uracil-DNA glycosylase	NA	S4VZ65	Pandoravirus	39.6	1.2e-34
>prophage 280
NC_016948	Mycobacterium paraintracellulare, complete sequence	5501090	4009208	4009856	5501090		Streptomyces_phage(100.0%)	1	NA	NA
WP_008259006.1|4009208_4009856_-	HU family DNA-binding protein	NA	A0A2P1N0A2	Streptomyces_phage	45.4	6.3e-14
>prophage 281
NC_016948	Mycobacterium paraintracellulare, complete sequence	5501090	4019999	4021586	5501090		Brazilian_cedratvirus(100.0%)	1	NA	NA
WP_009952790.1|4019999_4021586_-	phosphoglycerate dehydrogenase	NA	A0A2R8FDS8	Brazilian_cedratvirus	36.8	1.4e-38
>prophage 282
NC_016948	Mycobacterium paraintracellulare, complete sequence	5501090	4025272	4027141	5501090		Ostreococcus_lucimarinus_virus(100.0%)	1	NA	NA
WP_008259036.1|4025272_4027141_-	acetolactate synthase large subunit	NA	A0A0P0CDR3	Ostreococcus_lucimarinus_virus	27.3	1.3e-54
>prophage 283
NC_016948	Mycobacterium paraintracellulare, complete sequence	5501090	4032991	4034023	5501090		Micromonas_sp._RCC1109_virus(100.0%)	1	NA	NA
WP_008259042.1|4032991_4034023_-	6-phosphofructokinase	NA	E5EQL4	Micromonas_sp._RCC1109_virus	24.8	6.6e-13
>prophage 284
NC_016948	Mycobacterium paraintracellulare, complete sequence	5501090	4043914	4045996	5501090		Ralstonia_phage(100.0%)	1	NA	NA
WP_014385490.1|4043914_4045996_-	NAD-dependent DNA ligase LigA	NA	A0A0A8J9A9	Ralstonia_phage	36.4	2.4e-99
>prophage 285
NC_016948	Mycobacterium paraintracellulare, complete sequence	5501090	4049768	4050947	5501090		Faustovirus(100.0%)	1	NA	NA
WP_009954359.1|4049768_4050947_-	cysteine desulfurase	NA	A0A1X7QGF3	Faustovirus	25.5	2.4e-27
>prophage 286
NC_016948	Mycobacterium paraintracellulare, complete sequence	5501090	4078707	4080036	5501090		Bodo_saltans_virus(100.0%)	1	NA	NA
WP_014385504.1|4078707_4080036_+	deoxyribodipyrimidine photo-lyase	NA	A0A2H4UV63	Bodo_saltans_virus	29.6	3.6e-56
>prophage 287
NC_016948	Mycobacterium paraintracellulare, complete sequence	5501090	4087761	4088622	5501090		Paramecium_bursaria_Chlorella_virus(100.0%)	1	NA	NA
WP_029385157.1|4087761_4088622_-	ABC transporter ATP-binding protein	NA	M1I4Q1	Paramecium_bursaria_Chlorella_virus	26.6	1.3e-06
>prophage 288
NC_016948	Mycobacterium paraintracellulare, complete sequence	5501090	4093156	4095670	5501090		Tupanvirus(50.0%)	3	NA	NA
WP_014385512.1|4093156_4094197_+	NAD(P)-dependent alcohol dehydrogenase	NA	A0A2K9L7I1	Tupanvirus	43.1	2.1e-75
WP_014385513.1|4094201_4094552_-	DUF3349 domain-containing protein	NA	NA	NA	NA	NA
WP_009954743.1|4094695_4095670_-	class 1b ribonucleoside-diphosphate reductase subunit beta	NA	R4TBI6	Mycobacterium_phage	85.3	7.8e-157
>prophage 289
NC_016948	Mycobacterium paraintracellulare, complete sequence	5501090	4100714	4107812	5501090		Bacillus_phage(28.57%)	8	NA	NA
WP_014385516.1|4100714_4101209_+	VOC family protein	NA	A0A2K9L121	Tupanvirus	35.3	1.8e-13
WP_014385517.1|4101236_4103354_-	class 1b ribonucleoside-diphosphate reductase subunit alpha	NA	V9VI16	Lactococcus_phage	51.7	2.5e-208
WP_008259183.1|4103371_4103824_-	class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	NA	A0A142F1R4	Bacillus_phage	40.2	5.8e-14
WP_008259184.1|4103855_4104095_-	redoxin NrdH	NA	V5UN81	Mycobacterium_phage	63.2	1.3e-20
WP_008259185.1|4104623_4105178_-	NAD(P)H-dependent oxidoreductase	NA	A0A2P0ZL77	Lactobacillus_phage	34.4	1.2e-05
WP_008259186.1|4105269_4105884_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_008259187.1|4105892_4106936_+	DNA polymerase IV	NA	F1C5A5	Cronobacter_phage	29.1	3.9e-21
WP_008259188.1|4106870_4107812_-	SDR family oxidoreductase	NA	W8CYX9	Bacillus_phage	28.8	1.2e-05
>prophage 290
NC_016948	Mycobacterium paraintracellulare, complete sequence	5501090	4120648	4122175	5501090		Organic_Lake_phycodnavirus(100.0%)	1	NA	NA
WP_014385521.1|4120648_4122175_+	Hsp70 family protein	NA	F2Y2E1	Organic_Lake_phycodnavirus	25.8	1.3e-20
>prophage 291
NC_016948	Mycobacterium paraintracellulare, complete sequence	5501090	4138266	4139094	5501090		Bacillus_phage(100.0%)	1	NA	NA
WP_014385529.1|4138266_4139094_+	mycofactocin-coupled SDR family oxidoreductase	NA	W8CYX9	Bacillus_phage	46.2	4.6e-09
>prophage 292
NC_016948	Mycobacterium paraintracellulare, complete sequence	5501090	4142128	4143987	5501090		Diadromus_pulchellus_ascovirus(50.0%)	2	NA	NA
WP_014383055.1|4142128_4142872_-	SDR family oxidoreductase	NA	F2NZ40	Diadromus_pulchellus_ascovirus	31.8	5.4e-17
WP_014385532.1|4142892_4143987_-	ferredoxin--NADP reductase	NA	A0A1D7SNA5	Cyanophage	41.6	1.2e-09
>prophage 293
NC_016948	Mycobacterium paraintracellulare, complete sequence	5501090	4152094	4152472	5501090		Gordonia_phage(100.0%)	1	NA	NA
WP_009954685.1|4152094_4152472_-	Fic family protein	NA	A0A1B3AYM0	Gordonia_phage	49.2	6.9e-21
>prophage 294
NC_016948	Mycobacterium paraintracellulare, complete sequence	5501090	4161571	4163035	5501090		Microcystis_phage(100.0%)	1	NA	NA
WP_014385544.1|4161571_4163035_+	YdiU family protein	NA	A0A075BSJ0	Microcystis_phage	38.4	4.7e-49
>prophage 295
NC_016948	Mycobacterium paraintracellulare, complete sequence	5501090	4177640	4185610	5501090		Brazilian_cedratvirus(33.33%)	3	NA	NA
WP_036389977.1|4177640_4180178_+	ATP-binding cassette domain-containing protein	NA	A0A2R8FG22	Brazilian_cedratvirus	36.6	1.8e-27
WP_014385553.1|4180185_4183311_-	protein kinase	NA	M1IKX4	Paramecium_bursaria_Chlorella_virus	28.4	4.2e-10
WP_014385554.1|4183408_4185610_-	acyltransferase	NA	A0A166XZF2	Gordonia_phage	32.2	1.4e-73
>prophage 296
NC_016948	Mycobacterium paraintracellulare, complete sequence	5501090	4189219	4190116	5501090		Acanthamoeba_polyphaga_mimivirus(100.0%)	1	NA	NA
WP_080588075.1|4189219_4190116_-	NADP-dependent oxidoreductase	NA	A0A0G2YAX3	Acanthamoeba_polyphaga_mimivirus	28.8	4.4e-05
>prophage 297
NC_016948	Mycobacterium paraintracellulare, complete sequence	5501090	4196336	4198432	5501090		Staphylococcus_phage(50.0%)	3	NA	NA
WP_009954261.1|4196336_4196846_-	SsrA-binding protein SmpB	NA	W5RAM5	Staphylococcus_phage	47.8	2.0e-31
WP_014385564.1|4196848_4197742_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_020415574.1|4197742_4198432_-	cell division ATP-binding protein FtsE	NA	G9BWD6	Planktothrix_phage	37.7	6.1e-31
>prophage 298
NC_016948	Mycobacterium paraintracellulare, complete sequence	5501090	4206720	4207518	5501090		Niemeyer_virus(100.0%)	1	NA	NA
WP_014385565.1|4206720_4207518_+	slipin family protein	NA	A0A0U2UF06	Niemeyer_virus	29.2	3.7e-24
>prophage 299
NC_016948	Mycobacterium paraintracellulare, complete sequence	5501090	4251743	4252709	5501090		Mycobacterium_phage(100.0%)	1	NA	NA
WP_014380859.1|4251743_4252709_-	alpha/beta hydrolase	NA	A0A1C9LZ53	Mycobacterium_phage	32.7	4.7e-05
>prophage 300
NC_016948	Mycobacterium paraintracellulare, complete sequence	5501090	4258887	4260990	5501090		Tupanvirus(100.0%)	1	NA	NA
WP_014385592.1|4258887_4260990_+	catalase	NA	A0A2K9L572	Tupanvirus	49.8	1.3e-145
>prophage 301
NC_016948	Mycobacterium paraintracellulare, complete sequence	5501090	4274718	4275378	5501090		Bacillus_phage(100.0%)	1	NA	NA
WP_014385600.1|4274718_4275378_-	UdgX family uracil-DNA binding protein	NA	S5M8J1	Bacillus_phage	36.5	6.0e-12
>prophage 302
NC_016948	Mycobacterium paraintracellulare, complete sequence	5501090	4279155	4280949	5501090		Bacillus_phage(100.0%)	1	NA	NA
WP_014385604.1|4279155_4280949_-	sensor domain-containing diguanylate cyclase	NA	A0A127AWB9	Bacillus_phage	29.7	8.2e-11
>prophage 303
NC_016948	Mycobacterium paraintracellulare, complete sequence	5501090	4292863	4294157	5501090	transposase	Burkholderia_virus(100.0%)	1	NA	NA
WP_139826619.1|4292863_4294157_+|transposase	IS3 family transposase	transposase	Q8W6R2	Burkholderia_virus	48.4	2.4e-57
>prophage 304
NC_016948	Mycobacterium paraintracellulare, complete sequence	5501090	4299637	4302886	5501090		Catovirus(100.0%)	1	NA	NA
WP_014385618.1|4299637_4302886_-	thioester reductase domain-containing protein	NA	A0A1V0SBX8	Catovirus	25.5	4.8e-09
>prophage 305
NC_016948	Mycobacterium paraintracellulare, complete sequence	5501090	4313117	4314412	5501090	transposase	Burkholderia_virus(100.0%)	1	NA	NA
WP_139826619.1|4313117_4314412_-|transposase	IS3 family transposase	transposase	Q8W6R2	Burkholderia_virus	48.4	2.4e-57
>prophage 306
NC_016948	Mycobacterium paraintracellulare, complete sequence	5501090	4320417	4321971	5501090		Catovirus(100.0%)	1	NA	NA
WP_014385628.1|4320417_4321971_+	GMC family oxidoreductase N-terminal domain-containing protein	NA	A0A1V0S9M4	Catovirus	30.4	1.3e-49
>prophage 307
NC_016948	Mycobacterium paraintracellulare, complete sequence	5501090	4337378	4346015	5501090		Propionibacterium_phage(33.33%)	6	NA	NA
WP_008259632.1|4337378_4337630_-	WhiB family transcriptional regulator	NA	A0A173G9I6	Propionibacterium_phage	50.9	2.7e-05
WP_162130201.1|4338034_4340134_-	UvrD-helicase domain-containing protein	NA	A0A2H4UW05	Bodo_saltans_virus	23.1	7.3e-11
WP_008259646.1|4340351_4340606_+	mycoredoxin Mrx1	NA	NA	NA	NA	NA
WP_008259652.1|4340616_4341549_-	NAD(+) diphosphatase	NA	NA	NA	NA	NA
WP_008259653.1|4341548_4342619_-	potassium channel family protein	NA	NA	NA	NA	NA
WP_014385635.1|4342667_4346015_-	ATP-dependent helicase	NA	A7KV33	Bacillus_phage	20.9	2.3e-06
>prophage 308
NC_016948	Mycobacterium paraintracellulare, complete sequence	5501090	4356981	4360786	5501090		Diachasmimorpha_longicaudata_entomopoxvirus(50.0%)	3	NA	NA
WP_014380922.1|4356981_4358511_+	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	32.3	5.5e-48
WP_009956180.1|4358526_4359753_+	hypothetical protein	NA	NA	NA	NA	NA
WP_009956179.1|4359985_4360786_-	ParA family protein	NA	Q8JL10	Natrialba_phage	32.4	1.1e-15
>prophage 309
NC_016948	Mycobacterium paraintracellulare, complete sequence	5501090	4364833	4368227	5501090		Mycobacterium_phage(50.0%)	5	NA	NA
WP_003874607.1|4364833_4365088_+	transcriptional regulator WhiB1	NA	A0A2P1N2X5	Mycobacterium_phage	43.9	1.5e-11
WP_014385642.1|4365148_4366648_-	sensor histidine kinase	NA	NA	NA	NA	NA
WP_007773063.1|4366698_4366914_-	biotin/lipoyl-binding carrier protein	NA	NA	NA	NA	NA
WP_008259700.1|4367253_4367568_-	mycothiol system anti-sigma-R factor	NA	NA	NA	NA	NA
WP_008259701.1|4367564_4368227_-	sigma-70 family RNA polymerase sigma factor	NA	A0A076YQ50	Rhizobium_phage	26.5	3.1e-08
>prophage 310
NC_016948	Mycobacterium paraintracellulare, complete sequence	5501090	4372567	4373317	5501090		Acanthamoeba_polyphaga_mimivirus(100.0%)	1	NA	NA
WP_014385645.1|4372567_4373317_-	SDR family oxidoreductase	NA	A0A0G2Y924	Acanthamoeba_polyphaga_mimivirus	34.3	2.5e-06
>prophage 311
NC_016948	Mycobacterium paraintracellulare, complete sequence	5501090	4408459	4421105	5501090	transposase	Pandoravirus(33.33%)	11	NA	NA
WP_051019801.1|4408459_4409080_+	sigma-70 family RNA polymerase sigma factor	NA	A0A076YQ50	Rhizobium_phage	29.8	1.1e-07
WP_014385665.1|4409128_4409557_-	hemerythrin domain-containing protein	NA	NA	NA	NA	NA
WP_158023545.1|4409926_4411085_+|transposase	IS3 family transposase	transposase	U5P429	Shigella_phage	35.4	8.4e-33
WP_158023546.1|4410980_4411997_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_014385669.1|4412114_4413575_+	FAD-binding oxidoreductase	NA	S4VRT3	Pandoravirus	39.5	1.9e-34
WP_014385670.1|4413576_4414674_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_014383182.1|4414675_4416430_-	MtrAB system accessory protein LpqB	NA	NA	NA	NA	NA
WP_009957360.1|4416429_4418130_-	HAMP domain-containing histidine kinase	NA	W8CYF6	Bacillus_phage	28.1	1.3e-18
WP_007168097.1|4418143_4418830_-	two-component system response regulator MtrA	NA	W8CYM9	Bacillus_phage	37.6	1.6e-39
WP_014385672.1|4418910_4419543_-	dTMP kinase	NA	NA	NA	NA	NA
WP_014385673.1|4419632_4421105_-	adenosylhomocysteinase	NA	S4VPF6	Pandoravirus	28.2	2.0e-39
>prophage 312
NC_016948	Mycobacterium paraintracellulare, complete sequence	5501090	4431605	4431878	5501090		Mycobacterium_phage(100.0%)	1	NA	NA
WP_008259804.1|4431605_4431878_-	WhiB family transcriptional regulator	NA	A0A2P1CGA4	Mycobacterium_phage	77.5	1.9e-28
>prophage 313
NC_016948	Mycobacterium paraintracellulare, complete sequence	5501090	4436907	4452884	5501090		Enterobacteria_phage(16.67%)	14	NA	NA
WP_008259820.1|4436907_4437984_-	NDP-sugar synthase	NA	I7I009	Enterobacteria_phage	26.5	1.3e-16
WP_008259824.1|4437985_4438876_-	glycosyltransferase family 2 protein	NA	NA	NA	NA	NA
WP_014385682.1|4438868_4439756_-	dTDP-4-dehydrorhamnose reductase	NA	A0A291LA50	Escherichia_phage	35.7	1.2e-26
WP_036389908.1|4439881_4441354_+	LCP family protein	NA	NA	NA	NA	NA
WP_008259829.1|4441402_4442077_+	TIGR03089 family protein	NA	NA	NA	NA	NA
WP_008259830.1|4442184_4442466_+	DUF1490 family protein	NA	NA	NA	NA	NA
WP_014383193.1|4442474_4444691_+	manganese-exporting P-type ATPase CtpC	NA	E4ZFI9	Streptococcus_phage	32.5	5.1e-79
WP_014385684.1|4444697_4445348_-	cation transporter	NA	NA	NA	NA	NA
WP_014385685.1|4445506_4446421_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_014942813.1|4446436_4447633_+	CoA transferase	NA	NA	NA	NA	NA
WP_014385687.1|4447636_4449622_-	protein kinase	NA	A0A2R8FG94	Cedratvirus	27.5	2.2e-09
WP_041785177.1|4449637_4450744_-	phosphate ABC transporter substrate-binding protein PstS	NA	NA	NA	NA	NA
WP_009953225.1|4450928_4451723_+	ATP-binding cassette domain-containing protein	NA	A0A1V0SE00	Indivirus	26.1	3.0e-13
WP_014385689.1|4451759_4452884_+	phosphate ABC transporter substrate-binding protein PstS	NA	A0A1D7SRJ6	Cyanophage	25.5	7.2e-13
>prophage 314
NC_016948	Mycobacterium paraintracellulare, complete sequence	5501090	4456427	4461193	5501090		Bacillus_phage(50.0%)	4	NA	NA
WP_014385693.1|4456427_4458029_-	CHASE3 domain-containing protein	NA	W8CYF6	Bacillus_phage	25.1	6.0e-13
WP_014380982.1|4458025_4459171_-	SpoIIE family protein phosphatase	NA	NA	NA	NA	NA
WP_009953234.1|4459418_4460588_-	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_009953235.1|4460671_4461193_-	5-(carboxyamino)imidazole ribonucleotide mutase	NA	A0A2P0VNU7	Tetraselmis_virus	47.2	8.7e-22
>prophage 315
NC_016948	Mycobacterium paraintracellulare, complete sequence	5501090	4476250	4480157	5501090		Bacillus_phage(50.0%)	5	NA	NA
WP_008259929.1|4476250_4477039_-	RNA polymerase sigma factor SigF	NA	A0A218KDJ1	Bacillus_phage	26.5	4.5e-14
WP_008259930.1|4477035_4477473_-	anti-sigma factor	NA	NA	NA	NA	NA
WP_008259932.1|4477904_4478216_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014385698.1|4478270_4478654_-	hypothetical protein	NA	NA	NA	NA	NA
WP_041785784.1|4478804_4480157_-	L-lysine 6-transaminase	NA	A0A1V0SKB7	Klosneuvirus	44.9	1.4e-111
>prophage 316
NC_016948	Mycobacterium paraintracellulare, complete sequence	5501090	4493653	4494787	5501090		Mycobacterium_phage(100.0%)	1	NA	NA
WP_014385707.1|4493653_4494787_-	PPE family protein	NA	V5UPR1	Mycobacterium_phage	27.6	9.1e-08
>prophage 317
NC_016948	Mycobacterium paraintracellulare, complete sequence	5501090	4505922	4507506	5501090		Streptococcus_phage(100.0%)	1	NA	NA
WP_014385716.1|4505922_4507506_+	phospho-sugar mutase	NA	A0A1X9I671	Streptococcus_phage	33.1	6.7e-57
>prophage 318
NC_016948	Mycobacterium paraintracellulare, complete sequence	5501090	4516050	4517337	5501090		Geobacillus_virus(100.0%)	1	NA	NA
WP_139826597.1|4516050_4517337_-	thymidine phosphorylase	NA	A0A0H3UZD4	Geobacillus_virus	44.4	7.3e-78
>prophage 319
NC_016948	Mycobacterium paraintracellulare, complete sequence	5501090	4525659	4526901	5501090		Erythrobacter_phage(100.0%)	1	NA	NA
WP_014385727.1|4525659_4526901_+	D-alanyl-D-alanine carboxypeptidase	NA	A0A1P8VVG5	Erythrobacter_phage	30.7	2.4e-09
>prophage 320
NC_016948	Mycobacterium paraintracellulare, complete sequence	5501090	4536831	4538220	5501090		Pandoravirus(100.0%)	1	NA	NA
WP_014385729.1|4536831_4538220_+	bifunctional o-acetylhomoserine/o-acetylserine sulfhydrylase	NA	A0A0B5JD48	Pandoravirus	26.5	4.2e-15
>prophage 321
NC_016948	Mycobacterium paraintracellulare, complete sequence	5501090	4545239	4550291	5501090		Brazilian_cedratvirus(50.0%)	2	NA	NA
WP_041785791.1|4545239_4547903_+	ATP-binding cassette domain-containing protein	NA	A0A2R8FG22	Brazilian_cedratvirus	35.7	9.3e-27
WP_014385736.1|4547939_4550291_+	ATP-binding cassette domain-containing protein	NA	A0A2R8FFL6	Cedratvirus	34.0	3.7e-27
>prophage 322
NC_016948	Mycobacterium paraintracellulare, complete sequence	5501090	4557485	4560773	5501090		Streptomyces_phage(100.0%)	1	NA	NA
WP_014385740.1|4557485_4560773_-	error-prone DNA polymerase	NA	R4TMT6	Streptomyces_phage	32.4	5.7e-119
>prophage 323
NC_016948	Mycobacterium paraintracellulare, complete sequence	5501090	4565714	4566602	5501090		Tupanvirus(100.0%)	1	NA	NA
WP_014381039.1|4565714_4566602_-	class I SAM-dependent methyltransferase	NA	A0A2K9L4K8	Tupanvirus	32.3	1.6e-31
>prophage 324
NC_016948	Mycobacterium paraintracellulare, complete sequence	5501090	4573612	4575223	5501090		Hokovirus(100.0%)	1	NA	NA
WP_179960092.1|4573612_4575223_-	glutamine-hydrolyzing GMP synthase	NA	A0A1V0SH76	Hokovirus	26.1	1.1e-11
>prophage 325
NC_016948	Mycobacterium paraintracellulare, complete sequence	5501090	4584998	4586594	5501090		Klosneuvirus(100.0%)	1	NA	NA
WP_014942860.1|4584998_4586594_-	IMP dehydrogenase	NA	A0A1V0SHK8	Klosneuvirus	38.6	1.2e-85
>prophage 326
NC_016948	Mycobacterium paraintracellulare, complete sequence	5501090	4589686	4589989	5501090		Mycobacterium_virus(100.0%)	1	NA	NA
WP_009952496.1|4589686_4589989_+	WhiB family transcriptional regulator	NA	I6XD27	Mycobacterium_virus	44.2	1.2e-10
>prophage 327
NC_016948	Mycobacterium paraintracellulare, complete sequence	5501090	4596898	4600185	5501090	tRNA	uncultured_virus(66.67%)	3	NA	NA
WP_008260188.1|4596898_4598521_-	chaperonin GroEL	NA	A0A219YK78	uncultured_virus	50.7	1.9e-136
WP_007167930.1|4598616_4598919_-	co-chaperone GroES	NA	A0A221S3C8	uncultured_virus	54.8	5.6e-21
WP_014381060.1|4599159_4600185_-|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	tRNA	A0A291ATS8	Pandoravirus	37.0	1.2e-35
>prophage 328
NC_016948	Mycobacterium paraintracellulare, complete sequence	5501090	4608825	4610691	5501090		Paramecium_bursaria_Chlorella_virus(100.0%)	1	NA	NA
WP_008260209.1|4608825_4610691_-	glutamine--fructose-6-phosphate transaminase (isomerizing)	NA	M1H1Z3	Paramecium_bursaria_Chlorella_virus	36.9	2.2e-99
>prophage 329
NC_016948	Mycobacterium paraintracellulare, complete sequence	5501090	4620047	4627891	5501090	protease	Mycobacterium_phage(100.0%)	4	NA	NA
WP_014385769.1|4620047_4623737_-	type VII secretion protein EccCb	NA	V5UPA0	Mycobacterium_phage	28.3	9.1e-81
WP_014385770.1|4623830_4625240_+	type VII secretion integral membrane protein EccD	NA	NA	NA	NA	NA
WP_043955845.1|4625284_4626553_+|protease	type VII secretion-associated serine protease mycosin	protease	V5UPA7	Mycobacterium_phage	34.9	3.8e-47
WP_014385772.1|4626517_4627891_-	type VII secretion protein EccB	NA	V5UN45	Mycobacterium_phage	29.8	1.9e-28
>prophage 330
NC_016948	Mycobacterium paraintracellulare, complete sequence	5501090	4634442	4644786	5501090		Burkholderia_phage(42.86%)	9	NA	NA
WP_014385776.1|4634442_4636107_+	FAD-dependent oxidoreductase	NA	G3MA85	Bacillus_virus	30.2	1.3e-34
WP_014385777.1|4636103_4637630_+	cyclic nucleotide-binding domain-containing protein	NA	W8CYF6	Bacillus_phage	37.4	1.3e-12
WP_014381083.1|4637669_4638518_+	LLM class F420-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_014385778.1|4638538_4639405_+	LLM class F420-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_014381085.1|4639432_4640428_+	dTDP-glucose 4,6-dehydratase	NA	I7HTA3	Enterobacteria_phage	46.2	2.2e-74
WP_036459800.1|4640429_4641047_+	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	I7HJC4	Enterobacteria_phage	38.8	1.3e-27
WP_014385779.1|4641246_4642368_+	acyltransferase	NA	A9YX16	Burkholderia_phage	27.7	1.3e-14
WP_014385780.1|4642497_4643634_+	acyltransferase	NA	A9YX16	Burkholderia_phage	27.2	2.8e-17
WP_041785798.1|4643697_4644786_+	acyltransferase	NA	A9YX16	Burkholderia_phage	29.9	3.5e-17
>prophage 331
NC_016948	Mycobacterium paraintracellulare, complete sequence	5501090	4653478	4654534	5501090		Faustovirus(100.0%)	1	NA	NA
WP_009956590.1|4653478_4654534_-	aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme	NA	A0A1X7QHI1	Faustovirus	28.8	5.3e-10
>prophage 332
NC_016948	Mycobacterium paraintracellulare, complete sequence	5501090	4658018	4658714	5501090		Planktothrix_phage(100.0%)	1	NA	NA
WP_009956588.1|4658018_4658714_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	38.5	8.0e-31
>prophage 333
NC_016948	Mycobacterium paraintracellulare, complete sequence	5501090	4665912	4666458	5501090		Tupanvirus(100.0%)	1	NA	NA
WP_009956578.1|4665912_4666458_-	adenylate kinase	NA	A0A2K9L833	Tupanvirus	33.8	1.8e-14
>prophage 334
NC_016948	Mycobacterium paraintracellulare, complete sequence	5501090	4671028	4672009	5501090		Paramecium_bursaria_Chlorella_virus(100.0%)	1	NA	NA
WP_041785209.1|4671028_4672009_+	3-phosphoglycerate dehydrogenase	NA	M1HBE3	Paramecium_bursaria_Chlorella_virus	28.3	3.8e-18
>prophage 335
NC_016948	Mycobacterium paraintracellulare, complete sequence	5501090	4687367	4688258	5501090		Microcystis_phage(100.0%)	1	NA	NA
WP_014381115.1|4687367_4688258_-	formylglycine-generating enzyme family protein	NA	A0A075BSL8	Microcystis_phage	31.4	4.3e-21
>prophage 336
NC_016948	Mycobacterium paraintracellulare, complete sequence	5501090	4698669	4700115	5501090		Acanthamoeba_castellanii_mimivirus(100.0%)	1	NA	NA
WP_014385804.1|4698669_4700115_-	mycofactocin system GMC family oxidoreductase MftG	NA	A0A1E1EUP9	Acanthamoeba_castellanii_mimivirus	21.9	4.3e-10
>prophage 337
NC_016948	Mycobacterium paraintracellulare, complete sequence	5501090	4707045	4707906	5501090		Staphylococcus_phage(100.0%)	1	NA	NA
WP_014381127.1|4707045_4707906_-	aldo/keto reductase	NA	A0A2H4PQR8	Staphylococcus_phage	41.7	7.3e-50
>prophage 338
NC_016948	Mycobacterium paraintracellulare, complete sequence	5501090	4713283	4716756	5501090		Hokovirus(50.0%)	2	NA	NA
WP_008260847.1|4713283_4714474_-	elongation factor Tu	NA	A0A1V0SGC3	Hokovirus	27.4	1.4e-30
WP_008260848.1|4714650_4716756_-	elongation factor G	NA	E4ZFJ7	Streptococcus_phage	26.5	2.7e-61
>prophage 339
NC_016948	Mycobacterium paraintracellulare, complete sequence	5501090	4725566	4734497	5501090		Vibrio_phage(33.33%)	3	NA	NA
WP_009957074.1|4725566_4729517_-	DNA-directed RNA polymerase subunit beta'	NA	A0A2I7QNZ7	Vibrio_phage	26.8	9.5e-52
WP_085977595.1|4729561_4733080_-	DNA-directed RNA polymerase subunit beta	NA	A0A1B1ISA9	uncultured_Mediterranean_phage	22.5	3.7e-39
WP_008260873.1|4733486_4734497_-	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	35.1	1.4e-23
>prophage 340
NC_016948	Mycobacterium paraintracellulare, complete sequence	5501090	4745765	4750028	5501090		Micromonas_pusilla_virus(33.33%)	4	NA	NA
WP_020823622.1|4745765_4747112_+	AarF/ABC1/UbiB kinase family protein	NA	G8DDN0	Micromonas_pusilla_virus	29.4	1.1e-31
WP_008260899.1|4747114_4748020_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_008260900.1|4748108_4748969_+	class I SAM-dependent methyltransferase	NA	A0A2K9L4K8	Tupanvirus	28.4	3.4e-23
WP_008260901.1|4749131_4750028_+	class I SAM-dependent methyltransferase	NA	A0A2I2L5L3	Orpheovirus	29.2	1.2e-23
>prophage 341
NC_016948	Mycobacterium paraintracellulare, complete sequence	5501090	4762775	4765583	5501090		Tupanvirus(50.0%)	4	NA	NA
WP_008260961.1|4762775_4763780_-	patatin-like phospholipase family protein	NA	A0A2K9KZN5	Tupanvirus	24.1	3.1e-07
WP_014385825.1|4763780_4764248_-	cyanase	NA	NA	NA	NA	NA
WP_008260964.1|4764269_4765019_-	methyltransferase domain-containing protein	NA	NA	NA	NA	NA
WP_008260966.1|4765067_4765583_-	nitroreductase family protein	NA	A0A1V0E011	Clostridioides_phage	27.0	7.5e-10
>prophage 342
NC_016948	Mycobacterium paraintracellulare, complete sequence	5501090	4769949	4774970	5501090		Cafeteria_roenbergensis_virus(50.0%)	2	NA	NA
WP_014385827.1|4769949_4773252_+	exodeoxyribonuclease V subunit beta	NA	E3T5J8	Cafeteria_roenbergensis_virus	19.6	1.0e-06
WP_014385828.1|4773248_4774970_+	exodeoxyribonuclease V subunit alpha	NA	A0A0K2FLP8	Brevibacillus_phage	24.3	2.8e-16
>prophage 343
NC_016948	Mycobacterium paraintracellulare, complete sequence	5501090	4792772	4797393	5501090	transposase	Mycobacterium_phage(50.0%)	4	NA	NA
WP_014385836.1|4792772_4793645_-	alpha/beta fold hydrolase	NA	G1DB77	Mycobacterium_phage	29.3	1.0e-14
WP_014385837.1|4793711_4794611_+	NYN domain-containing protein	NA	NA	NA	NA	NA
WP_008260994.1|4794764_4795994_+	cytochrome P450	NA	NA	NA	NA	NA
WP_142305508.1|4796274_4797393_+|transposase	IS30 family transposase	transposase	W5R8L2	Staphylococcus_phage	32.6	5.1e-35
>prophage 344
NC_016948	Mycobacterium paraintracellulare, complete sequence	5501090	4820704	4822306	5501090		Staphylococcus_phage(100.0%)	1	NA	NA
WP_014385846.1|4820704_4822306_+	AMP-binding protein	NA	A0A2H4PQM9	Staphylococcus_phage	25.5	9.5e-27
>prophage 345
NC_016948	Mycobacterium paraintracellulare, complete sequence	5501090	4828722	4829862	5501090		Catovirus(100.0%)	1	NA	NA
WP_080588078.1|4828722_4829862_+	o-succinylbenzoate--CoA ligase	NA	A0A1V0SBX8	Catovirus	25.9	7.3e-05
>prophage 346
NC_016948	Mycobacterium paraintracellulare, complete sequence	5501090	4836431	4837460	5501090		Bodo_saltans_virus(100.0%)	1	NA	NA
WP_014385851.1|4836431_4837460_-	NAD-dependent epimerase/dehydratase family protein	NA	A0A2H4UUK0	Bodo_saltans_virus	27.2	1.4e-18
>prophage 347
NC_016948	Mycobacterium paraintracellulare, complete sequence	5501090	4851269	4854836	5501090		Catovirus(100.0%)	1	NA	NA
WP_014385858.1|4851269_4854836_+	thioester reductase domain-containing protein	NA	A0A1V0SBX8	Catovirus	24.5	2.3e-12
>prophage 348
NC_016948	Mycobacterium paraintracellulare, complete sequence	5501090	4860058	4864389	5501090		Gordonia_phage(50.0%)	3	NA	NA
WP_014385863.1|4860058_4862182_+	acyltransferase	NA	A0A166XZF2	Gordonia_phage	32.2	1.8e-73
WP_026071180.1|4862373_4863060_-	SGNH/GDSL hydrolase family protein	NA	NA	NA	NA	NA
WP_014381214.1|4863150_4864389_-	acyltransferase	NA	A0A2H4JA46	uncultured_Caudovirales_phage	26.7	1.4e-14
>prophage 349
NC_016948	Mycobacterium paraintracellulare, complete sequence	5501090	4877155	4878082	5501090		Tupanvirus(100.0%)	1	NA	NA
WP_008261174.1|4877155_4878082_+	class I SAM-dependent methyltransferase	NA	A0A2K9L4K8	Tupanvirus	30.1	4.3e-24
>prophage 350
NC_016948	Mycobacterium paraintracellulare, complete sequence	5501090	4886674	4888678	5501090		Bacillus_phage(100.0%)	2	NA	NA
WP_008261205.1|4886674_4887358_-	two-component sensory transduction protein RegX	NA	W8CYM9	Bacillus_phage	40.4	3.4e-42
WP_008261206.1|4887448_4888678_-	two-component sensor histidine kinase	NA	W8CYF6	Bacillus_phage	33.0	1.9e-27
>prophage 351
NC_016948	Mycobacterium paraintracellulare, complete sequence	5501090	4904012	4905800	5501090		Tupanvirus(100.0%)	2	NA	NA
WP_008261257.1|4904012_4904879_+	class I SAM-dependent methyltransferase	NA	A0A2K9L4K8	Tupanvirus	32.4	1.7e-30
WP_008261260.1|4904939_4905800_-	class I SAM-dependent methyltransferase	NA	A0A2K9L4K8	Tupanvirus	33.1	2.6e-31
>prophage 352
NC_016948	Mycobacterium paraintracellulare, complete sequence	5501090	4911906	4913304	5501090		Erysipelothrix_phage(100.0%)	1	NA	NA
WP_014383364.1|4911906_4913304_-	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	28.4	2.7e-46
>prophage 353
NC_016948	Mycobacterium paraintracellulare, complete sequence	5501090	4916435	4922249	5501090		Klosneuvirus(33.33%)	6	NA	NA
WP_008261277.1|4916435_4918616_+	S9 family peptidase	NA	A0A1V0SHT0	Klosneuvirus	30.8	1.5e-30
WP_008261279.1|4918626_4918938_+	hypothetical protein	NA	NA	NA	NA	NA
WP_008261283.1|4918945_4919857_+	crotonase/enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_008261284.1|4919936_4920389_+	DUF5078 domain-containing protein	NA	NA	NA	NA	NA
WP_008261287.1|4920636_4921284_+	superoxide dismutase	NA	Q56AR7	Bacillus_thuringiensis_phage	41.1	1.9e-34
WP_008261290.1|4921280_4922249_+	class 1b ribonucleoside-diphosphate reductase subunit beta	NA	A0A0N7CCA3	Skermania_phage	73.0	5.6e-131
>prophage 354
NC_016948	Mycobacterium paraintracellulare, complete sequence	5501090	4934796	4936422	5501090		uncultured_virus(100.0%)	1	NA	NA
WP_008261313.1|4934796_4936422_-	chaperonin GroEL	NA	A0A240F779	uncultured_virus	55.7	6.0e-154
>prophage 355
NC_016948	Mycobacterium paraintracellulare, complete sequence	5501090	4944732	4946904	5501090		Phaeocystis_globosa_virus(100.0%)	1	NA	NA
WP_036455285.1|4944732_4946904_+	AAA family ATPase	NA	R4TQL5	Phaeocystis_globosa_virus	40.1	4.0e-36
>prophage 356
NC_016948	Mycobacterium paraintracellulare, complete sequence	5501090	4955844	4956153	5501090		Gordonia_phage(100.0%)	1	NA	NA
WP_008261362.1|4955844_4956153_-	DUF3263 domain-containing protein	NA	A0A1B3AZ99	Gordonia_phage	44.9	4.2e-08
>prophage 357
NC_016948	Mycobacterium paraintracellulare, complete sequence	5501090	4959272	4963712	5501090		Paramecium_bursaria_Chlorella_virus(100.0%)	1	NA	NA
WP_014385895.1|4959272_4963712_+	cation-translocating P-type ATPase	NA	M1HBF8	Paramecium_bursaria_Chlorella_virus	27.8	6.0e-39
>prophage 358
NC_016948	Mycobacterium paraintracellulare, complete sequence	5501090	4971497	4972916	5501090		Mycobacterium_phage(100.0%)	1	NA	NA
WP_014385901.1|4971497_4972916_+	serine hydrolase	NA	S5Z991	Mycobacterium_phage	26.7	3.4e-12
>prophage 359
NC_016948	Mycobacterium paraintracellulare, complete sequence	5501090	4976550	4979918	5501090		Lactobacillus_phage(50.0%)	3	NA	NA
WP_014385905.1|4976550_4977771_+	peptidoglycan DD-metalloendopeptidase family protein	NA	O03937	Lactobacillus_phage	30.2	1.9e-11
WP_014385906.1|4977754_4978795_-	hypothetical protein	NA	NA	NA	NA	NA
WP_008261409.1|4978934_4979918_-	NAD-dependent epimerase/dehydratase family protein	NA	A0A2K9L4U8	Tupanvirus	30.4	1.3e-31
>prophage 360
NC_016948	Mycobacterium paraintracellulare, complete sequence	5501090	4985362	4986130	5501090		Gordonia_phage(100.0%)	1	NA	NA
WP_014385910.1|4985362_4986130_-	SGNH/GDSL hydrolase family protein	NA	A0A160DD06	Gordonia_phage	30.3	2.8e-08
>prophage 361
NC_016948	Mycobacterium paraintracellulare, complete sequence	5501090	4992050	4994288	5501090		Myeloproliferative_sarcoma_virus(100.0%)	1	NA	NA
WP_085977591.1|4992050_4994288_+	protein kinase	NA	Q83745	Myeloproliferative_sarcoma_virus	28.2	2.5e-09
>prophage 362
NC_016948	Mycobacterium paraintracellulare, complete sequence	5501090	5013085	5014384	5501090		Pandoravirus(100.0%)	1	NA	NA
WP_014385923.1|5013085_5014384_-	adenylosuccinate synthase	NA	A0A291AUF9	Pandoravirus	34.4	4.9e-66
>prophage 363
NC_016948	Mycobacterium paraintracellulare, complete sequence	5501090	5025921	5026461	5501090		Prochlorococcus_phage(100.0%)	1	NA	NA
WP_008261506.1|5025921_5026461_-	orotate phosphoribosyltransferase	NA	Q58MW1	Prochlorococcus_phage	44.4	2.5e-16
>prophage 364
NC_016948	Mycobacterium paraintracellulare, complete sequence	5501090	5029640	5032187	5501090		Cronobacter_phage(100.0%)	1	NA	NA
WP_008261516.1|5029640_5032187_-	ATP-dependent chaperone ClpB	NA	K4FB40	Cronobacter_phage	35.6	7.5e-119
>prophage 365
NC_016948	Mycobacterium paraintracellulare, complete sequence	5501090	5035425	5039151	5501090		Yellowstone_lake_phycodnavirus(50.0%)	3	NA	NA
WP_008261532.1|5035425_5036604_-	molecular chaperone DnaJ	NA	A0A0P0YMJ9	Yellowstone_lake_phycodnavirus	27.4	3.0e-14
WP_014943046.1|5036653_5037295_-	nucleotide exchange factor GrpE	NA	NA	NA	NA	NA
WP_014385934.1|5037291_5039151_-	molecular chaperone DnaK	NA	A0A0N9QXN8	Chrysochromulina_ericina_virus	50.3	1.1e-143
>prophage 366
NC_016948	Mycobacterium paraintracellulare, complete sequence	5501090	5053691	5060000	5501090		Escherichia_phage(33.33%)	7	NA	NA
WP_008261569.1|5053691_5054567_-	glucose-1-phosphate thymidylyltransferase RfbA	NA	K7QKA7	Escherichia_phage	56.4	4.6e-92
WP_009954015.1|5054601_5054976_-	nuclear transport factor 2 family protein	NA	NA	NA	NA	NA
WP_014385945.1|5055005_5055761_-	maleylpyruvate isomerase family mycothiol-dependent enzyme	NA	NA	NA	NA	NA
WP_014385946.1|5055861_5056518_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_014385947.1|5056757_5058080_+	MFS transporter	NA	Q6JIH2	Burkholderia_virus	31.5	7.8e-43
WP_167324050.1|5058098_5058563_-	TauD/TfdA family dioxygenase	NA	NA	NA	NA	NA
WP_008261583.1|5058674_5060000_-	UDP-glucose/GDP-mannose dehydrogenase family protein	NA	A0A127AXI2	Bacillus_phage	36.3	1.7e-69
>prophage 367
NC_016948	Mycobacterium paraintracellulare, complete sequence	5501090	5065319	5066557	5501090		Saccharomonospora_phage(50.0%)	2	NA	NA
WP_008261591.1|5065319_5065892_-	dCTP deaminase	NA	I4AZP2	Saccharomonospora_phage	76.9	2.2e-79
WP_179960093.1|5065921_5066557_-	hypothetical protein	NA	Q9ZX60	Mycobacterium_phage	45.1	4.0e-21
>prophage 368
NC_016948	Mycobacterium paraintracellulare, complete sequence	5501090	5080554	5081382	5501090		Acanthocystis_turfacea_Chlorella_virus(100.0%)	1	NA	NA
WP_009956078.1|5080554_5081382_-	glycoside hydrolase family 16 protein	NA	M1I0P8	Acanthocystis_turfacea_Chlorella_virus	33.3	3.5e-09
>prophage 369
NC_016948	Mycobacterium paraintracellulare, complete sequence	5501090	5097420	5098830	5501090	protease	Mycobacterium_phage(100.0%)	1	NA	NA
WP_014381361.1|5097420_5098830_-|protease	type VII secretion-associated serine protease mycosin	protease	V5UPA7	Mycobacterium_phage	40.1	4.5e-73
>prophage 370
NC_016948	Mycobacterium paraintracellulare, complete sequence	5501090	5103748	5111183	5501090		Mycobacterium_phage(100.0%)	3	NA	NA
WP_014385965.1|5103748_5107738_-	type VII secretion protein EccC	NA	V5UPA0	Mycobacterium_phage	26.6	3.1e-95
WP_008261687.1|5107734_5109354_-	type VII secretion protein EccB	NA	NA	NA	NA	NA
WP_085976523.1|5109350_5111183_-	type VII secretion system ESX-3 AAA family ATPase EccA3	NA	V5UQM2	Mycobacterium_phage	41.8	7.9e-102
>prophage 371
NC_016948	Mycobacterium paraintracellulare, complete sequence	5501090	5128871	5130560	5501090		Staphylococcus_phage(100.0%)	1	NA	NA
WP_038538862.1|5128871_5130560_-	acyl-CoA synthetase	NA	A0A2H4PQM9	Staphylococcus_phage	28.7	2.5e-25
>prophage 372
NC_016948	Mycobacterium paraintracellulare, complete sequence	5501090	5176813	5180905	5501090		Yellowstone_lake_phycodnavirus(50.0%)	3	NA	NA
WP_009957646.1|5176813_5178460_-	acetolactate synthase large subunit	NA	A0A0P0YLY7	Yellowstone_lake_phycodnavirus	24.8	2.8e-34
WP_026071133.1|5178540_5179959_+	NADP-dependent succinic semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_014385993.1|5179963_5180905_-	R2-like ligand-binding oxidase	NA	A0A1V0CNG9	Kaumoebavirus	26.8	1.1e-06
>prophage 373
NC_016948	Mycobacterium paraintracellulare, complete sequence	5501090	5195159	5196389	5501090		Cronobacter_phage(100.0%)	1	NA	NA
WP_008261842.1|5195159_5196389_-	TerC family protein	NA	K4F9T9	Cronobacter_phage	33.8	2.1e-34
>prophage 374
NC_016948	Mycobacterium paraintracellulare, complete sequence	5501090	5200243	5201761	5501090		Hepacivirus(100.0%)	1	NA	NA
WP_008261848.1|5200243_5201761_-	long-chain fatty acid--CoA ligase	NA	Q75ZG1	Hepacivirus	29.7	1.1e-32
>prophage 375
NC_016948	Mycobacterium paraintracellulare, complete sequence	5501090	5205524	5208516	5501090		Mycobacterium_phage(100.0%)	3	NA	NA
WP_014385999.1|5205524_5206730_-	alpha/beta hydrolase	NA	A0A088FQA2	Mycobacterium_phage	39.0	2.1e-47
WP_008261863.1|5206898_5207561_-	SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_014381419.1|5207787_5208516_-	alpha/beta fold hydrolase	NA	A0A1D8EUH4	Mycobacterium_phage	36.0	1.2e-05
>prophage 376
NC_016948	Mycobacterium paraintracellulare, complete sequence	5501090	5236410	5238399	5501090		Klosneuvirus(100.0%)	1	NA	NA
WP_008261910.1|5236410_5238399_+	M13 family metallopeptidase	NA	A0A1V0SHG2	Klosneuvirus	29.5	1.0e-86
>prophage 377
NC_016948	Mycobacterium paraintracellulare, complete sequence	5501090	5247623	5248280	5501090		Mycobacterium_phage(100.0%)	1	NA	NA
WP_008261924.1|5247623_5248280_-	O-methyltransferase	NA	S5YRC3	Mycobacterium_phage	51.9	4.4e-47
>prophage 378
NC_016948	Mycobacterium paraintracellulare, complete sequence	5501090	5274896	5279620	5501090		Staphylococcus_phage(50.0%)	5	NA	NA
WP_009957279.1|5274896_5276483_-	long-chain-fatty-acid--CoA ligase	NA	A0A2H4PQM9	Staphylococcus_phage	28.7	3.6e-34
WP_014386033.1|5276677_5277358_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_041785297.1|5277516_5277957_-	SRPBCC family protein	NA	NA	NA	NA	NA
WP_139826554.1|5278016_5278493_-	acyl-CoA thioesterase	NA	NA	NA	NA	NA
WP_014943124.1|5278507_5279620_+	alcohol dehydrogenase catalytic domain-containing protein	NA	A0A0K0KVL7	Prochlorococcus_phage	29.2	9.8e-31
>prophage 379
NC_016948	Mycobacterium paraintracellulare, complete sequence	5501090	5297935	5298679	5501090		Trichoplusia_ni_ascovirus(100.0%)	1	NA	NA
WP_009956630.1|5297935_5298679_-	glucose 1-dehydrogenase	NA	Q06VL0	Trichoplusia_ni_ascovirus	31.6	7.8e-16
>prophage 380
NC_016948	Mycobacterium paraintracellulare, complete sequence	5501090	5320796	5322122	5501090		Cotesia_sesamiae_Mombasa_bracovirus(100.0%)	1	NA	NA
WP_041785307.1|5320796_5322122_-	cytochrome P450	NA	I6WI04	Cotesia_sesamiae_Mombasa_bracovirus	22.9	1.6e-19
>prophage 381
NC_016948	Mycobacterium paraintracellulare, complete sequence	5501090	5338884	5341816	5501090		Staphylococcus_phage(50.0%)	3	NA	NA
WP_014386075.1|5338884_5339724_+	ATP-binding cassette domain-containing protein	NA	A0A2H4PQG7	Staphylococcus_phage	25.6	5.2e-16
WP_014386076.1|5339713_5340532_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_008262140.1|5340766_5341816_+	esterase family protein	NA	A0A2I6B0H1	Macacine_betaherpesvirus	67.0	5.5e-124
>prophage 382
NC_016948	Mycobacterium paraintracellulare, complete sequence	5501090	5351698	5359109	5501090		Yellowstone_lake_phycodnavirus(50.0%)	4	NA	NA
WP_009957107.1|5351698_5353435_+	oxalyl-CoA decarboxylase	NA	A0A0P0YLY7	Yellowstone_lake_phycodnavirus	25.7	3.3e-25
WP_009957108.1|5353418_5354348_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_038538166.1|5354676_5355432_+	L,D-transpeptidase	NA	NA	NA	NA	NA
WP_014386080.1|5355542_5359109_+	carboxylic acid reductase	NA	A0A1V0SBX8	Catovirus	24.2	9.5e-11
>prophage 383
NC_016948	Mycobacterium paraintracellulare, complete sequence	5501090	5364097	5369497	5501090		Gordonia_phage(50.0%)	3	NA	NA
WP_014386085.1|5364097_5366092_-	acyltransferase family protein	NA	A0A166XZF2	Gordonia_phage	37.4	1.5e-42
WP_014386086.1|5366325_5367756_-	aldehyde dehydrogenase family protein	NA	NA	NA	NA	NA
WP_014386087.1|5367784_5369497_-	thiamine pyrophosphate-binding protein	NA	G9E525	Ostreococcus_lucimarinus_virus	22.7	9.2e-12
>prophage 384
NC_016948	Mycobacterium paraintracellulare, complete sequence	5501090	5380738	5383425	5501090		Staphylococcus_phage(50.0%)	2	NA	NA
WP_014386095.1|5380738_5382268_+	long-chain fatty acid--CoA ligase	NA	A0A2H4PQM9	Staphylococcus_phage	26.6	2.0e-34
WP_014386096.1|5382282_5383425_+	NDMA-dependent alcohol dehydrogenase	NA	E3SJ82	Synechococcus_phage	27.2	1.3e-30
>prophage 385
NC_016948	Mycobacterium paraintracellulare, complete sequence	5501090	5392414	5393986	5501090		Staphylococcus_phage(100.0%)	1	NA	NA
WP_014386101.1|5392414_5393986_-	AMP-binding protein	NA	A0A2H4PQM9	Staphylococcus_phage	25.0	1.9e-27
>prophage 386
NC_016948	Mycobacterium paraintracellulare, complete sequence	5501090	5423426	5425697	5501090		uncultured_virus(100.0%)	1	NA	NA
WP_008262364.1|5423426_5425697_+	copper-translocating P-type ATPase	NA	A0A218MNH6	uncultured_virus	37.9	1.4e-92
>prophage 387
NC_016948	Mycobacterium paraintracellulare, complete sequence	5501090	5432904	5434536	5501090		Catovirus(100.0%)	1	NA	NA
WP_014386114.1|5432904_5434536_+	AMP-binding protein	NA	A0A1V0SBX8	Catovirus	21.2	3.6e-05
>prophage 388
NC_016948	Mycobacterium paraintracellulare, complete sequence	5501090	5450811	5451705	5501090		Prochlorococcus_phage(100.0%)	1	NA	NA
WP_009953137.1|5450811_5451705_-	fructose bisphosphate aldolase	NA	A0A0K0KVJ8	Prochlorococcus_phage	29.6	1.9e-08
>prophage 389
NC_016948	Mycobacterium paraintracellulare, complete sequence	5501090	5470256	5472583	5501090		Mycobacterium_phage(50.0%)	2	NA	NA
WP_014381539.1|5470256_5471744_-	type VII secretion protein EccB	NA	V5UN45	Mycobacterium_phage	36.7	4.5e-71
WP_080588051.1|5471746_5472583_-	transglycosylase	NA	A0A1L2JY60	Aeribacillus_phage	42.7	8.2e-14
>prophage 390
NC_016948	Mycobacterium paraintracellulare, complete sequence	5501090	5480705	5482148	5501090	tRNA	Mycobacterium_phage(100.0%)	1	NA	NA
WP_014386136.1|5480705_5482148_-|tRNA	CCA tRNA nucleotidyltransferase	tRNA	A0A249XS88	Mycobacterium_phage	37.3	2.2e-62
>prophage 391
NC_016948	Mycobacterium paraintracellulare, complete sequence	5501090	5491372	5492733	5501090		Orpheovirus(50.0%)	2	NA	NA
WP_014386142.1|5491372_5492383_+	thioredoxin-disulfide reductase	NA	A0A2I2L5E1	Orpheovirus	47.6	3.1e-68
WP_008262471.1|5492379_5492733_+	thioredoxin	NA	A0A1J0GW78	Streptomyces_phage	56.7	1.5e-25
>prophage 392
NC_016948	Mycobacterium paraintracellulare, complete sequence	5501090	5496126	5496942	5501090		Natrialba_phage(100.0%)	1	NA	NA
WP_026071093.1|5496126_5496942_-	ParA family protein	NA	Q8JL10	Natrialba_phage	33.9	5.0e-24
