The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP015876	Pseudomonas putida SJTE-1 chromosome, complete genome	6077201	234397	295290	6077201	transposase,protease,holin	Bacillus_virus(30.0%)	57	NA	NA
WP_004576370.1|234397_234880_-|protease	ATP-dependent zinc protease	protease	NA	NA	NA	NA
WP_014755033.1|234989_235391_+	RNA-binding protein S4	NA	NA	NA	NA	NA
WP_004576368.1|235418_236213_-	phosphatase PAP2 family protein	NA	NA	NA	NA	NA
WP_011953214.1|236333_237233_+	Hsp33 family molecular chaperone HslO	NA	NA	NA	NA	NA
WP_003255806.1|237412_238954_+	phosphoenolpyruvate carboxykinase	NA	A0A2H4PQN1	Staphylococcus_phage	46.7	7.3e-125
WP_014755037.1|239370_239811_+	thioesterase family protein	NA	NA	NA	NA	NA
WP_003255803.1|239867_240350_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011953216.1|240546_242892_-	FdhF/YdeP family oxidoreductase	NA	NA	NA	NA	NA
WP_011953217.1|242897_243728_-	formate dehydrogenase accessory sulfurtransferase FdhD	NA	NA	NA	NA	NA
WP_010951629.1|243903_244344_+	peptidoglycan-binding protein LysM	NA	G3MBQ1	Bacillus_virus	36.4	9.6e-06
WP_003255795.1|244455_245118_-	GMP/IMP nucleotidase	NA	NA	NA	NA	NA
WP_003255794.1|245182_245749_+	ADP compounds hydrolase NudE	NA	NA	NA	NA	NA
WP_003255792.1|245745_246564_+	3'(2'),5'-bisphosphate nucleotidase CysQ	NA	NA	NA	NA	NA
WP_003255791.1|246710_247166_-	YiiD C-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_011953218.1|247165_248572_-	sigma-54-dependent Fis family transcriptional regulator	NA	NA	NA	NA	NA
WP_004575931.1|248568_250383_-	sensor histidine kinase	NA	NA	NA	NA	NA
WP_011953219.1|250425_250971_-	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	I7HJC4	Enterobacteria_phage	53.4	2.3e-49
WP_011953220.1|251249_252356_+	agmatine deiminase	NA	M1I1E2	Acanthocystis_turfacea_Chlorella_virus	50.8	8.7e-104
WP_014755042.1|252814_254884_-	TonB-dependent siderophore receptor	NA	NA	NA	NA	NA
WP_003255784.1|255358_256678_+	OprD family porin	NA	NA	NA	NA	NA
WP_014755044.1|256829_258500_-	FMN-binding glutamate synthase family protein	NA	NA	NA	NA	NA
WP_017147919.1|258745_260113_-	HAMP domain-containing protein	NA	NA	NA	NA	NA
WP_010951640.1|260114_260834_-	response regulator	NA	W8CYM9	Bacillus_phage	34.5	1.8e-30
WP_014755047.1|260974_263272_+	TonB-dependent siderophore receptor	NA	NA	NA	NA	NA
WP_011953227.1|263422_263629_-	DUF3079 domain-containing protein	NA	NA	NA	NA	NA
WP_172402800.1|263810_264164_+	type II toxin-antitoxin system HigB family toxin	NA	NA	NA	NA	NA
WP_004575922.1|264205_264679_+	transcriptional regulator	NA	NA	NA	NA	NA
WP_011953229.1|265099_265315_+	type II toxin-antitoxin system RelE/ParE family toxin	NA	NA	NA	NA	NA
WP_011953230.1|265311_265635_-	XRE family transcriptional regulator	NA	A0A2D1GR59	Pseudomonas_phage	45.6	1.2e-05
WP_014755049.1|266159_267302_-	DUF4935 domain-containing protein	NA	NA	NA	NA	NA
WP_014755052.1|269096_269927_-	DUF4393 domain-containing protein	NA	A0A0R6PGX6	Moraxella_phage	27.8	6.2e-14
WP_014755053.1|270031_270331_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014755055.1|270886_271180_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_014755056.1|271176_272040_+|transposase	IS3 family transposase	transposase	A0A0P0I4A4	Acinetobacter_phage	38.3	9.6e-42
WP_041167268.1|272279_273128_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010951646.1|273401_273650_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003255753.1|274175_274466_+	DUF3077 domain-containing protein	NA	NA	NA	NA	NA
WP_014755059.1|274820_276026_-	methyltransferase	NA	NA	NA	NA	NA
WP_014755060.1|276137_276827_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_003255749.1|276826_277519_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_011953233.1|277573_278326_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003255746.1|278337_279111_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	32.0	8.4e-21
WP_003255745.1|279742_281128_+	GABA permease	NA	NA	NA	NA	NA
WP_011953234.1|281331_281775_-	hypothetical protein	NA	NA	NA	NA	NA
WP_162182114.1|281962_282835_-	polyphosphate kinase 2	NA	NA	NA	NA	NA
WP_003255742.1|283279_283552_-	oxidative damage protection protein	NA	NA	NA	NA	NA
WP_011953236.1|283548_284616_-	A/G-specific adenine glycosylase	NA	NA	NA	NA	NA
WP_011953237.1|284612_286859_-	AsmA family protein	NA	NA	NA	NA	NA
WP_014755064.1|287126_288788_+	OFA family MFS transporter	NA	NA	NA	NA	NA
WP_003255736.1|289059_289653_+	imidazoleglycerol-phosphate dehydratase HisB	NA	NA	NA	NA	NA
WP_003255735.1|289653_290292_+	imidazole glycerol phosphate synthase subunit HisH	NA	NA	NA	NA	NA
WP_014755065.1|290292_290553_+	DUF2164 domain-containing protein	NA	NA	NA	NA	NA
WP_014755066.1|290580_291318_+	1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase	NA	NA	NA	NA	NA
WP_003255729.1|291328_292099_+	imidazole glycerol phosphate synthase subunit HisF	NA	NA	NA	NA	NA
WP_017148003.1|292237_293416_-|holin	choline ABC transporter ATP-binding protein	holin	G3M9Y6	Bacillus_virus	36.7	5.0e-25
WP_172830946.1|293412_294261_-|holin	choline ABC transporter permease subunit	holin	NA	NA	NA	NA
WP_010951661.1|294342_295290_-|holin	choline ABC transporter substrate-binding protein	holin	NA	NA	NA	NA
>prophage 2
NZ_CP015876	Pseudomonas putida SJTE-1 chromosome, complete genome	6077201	1048439	1056219	6077201		Thermobifida_phage(16.67%)	10	NA	NA
WP_003255139.1|1048439_1049294_-	RNase adapter RapZ	NA	A0A0R8VB27	Thermobifida_phage	31.9	2.4e-08
WP_003255137.1|1049296_1049761_-	PTS IIA-like nitrogen regulatory protein PtsN	NA	NA	NA	NA	NA
WP_003255135.1|1049773_1050082_-	ribosome-associated translation inhibitor RaiA	NA	A0A0K1LP60	Escherichia_phage	34.1	4.4e-05
WP_003255133.1|1050161_1051655_-	RNA polymerase factor sigma-54	NA	NA	NA	NA	NA
WP_003255132.1|1051831_1052557_-	LPS export ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	26.5	8.4e-23
WP_003255131.1|1052557_1053082_-	lipopolysaccharide transport periplasmic protein LptA	NA	NA	NA	NA	NA
WP_012051313.1|1053068_1053641_-	LPS export ABC transporter periplasmic protein LptC	NA	NA	NA	NA	NA
WP_003255129.1|1053649_1054174_-	HAD family hydrolase	NA	A0A140XBD6	Dickeya_phage	48.1	6.9e-27
WP_014755439.1|1054186_1055161_-	KpsF/GutQ family sugar-phosphate isomerase	NA	A0A2P0VNK5	Tetraselmis_virus	32.8	1.0e-36
WP_003255127.1|1055409_1056219_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	32.5	7.7e-25
>prophage 3
NZ_CP015876	Pseudomonas putida SJTE-1 chromosome, complete genome	6077201	1329588	1401001	6077201	plate,terminase,capsid,tRNA,holin,portal,tail,head,lysis	uncultured_Caudovirales_phage(48.72%)	81	NA	NA
WP_004575745.1|1329588_1331304_-|tRNA	proline--tRNA ligase	tRNA	NA	NA	NA	NA
WP_012051471.1|1331464_1332730_-	OprD family porin	NA	NA	NA	NA	NA
WP_012051472.1|1333421_1333841_+	HIT domain-containing protein	NA	NA	NA	NA	NA
WP_014755587.1|1333842_1334049_+	protein SlyX	NA	NA	NA	NA	NA
WP_003254784.1|1334170_1334764_-	cold-shock protein	NA	A0A1X9IGI9	Lactococcus_phage	48.3	2.3e-10
WP_012051474.1|1335043_1335517_+	DNA starvation/stationary phase protection protein	NA	A0A0A7RTZ1	Clostridium_phage	37.1	8.2e-19
WP_003254778.1|1335905_1336235_+	ribbon-helix-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003254776.1|1336328_1336550_+	zinc ribbon domain-containing protein	NA	NA	NA	NA	NA
WP_004575741.1|1336643_1338419_+|tRNA	aspartate--tRNA ligase	tRNA	A0A1V0SIS0	Klosneuvirus	26.3	5.6e-12
WP_003254770.1|1338533_1339280_+	YebC/PmpR family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_003254769.1|1339465_1339990_+	crossover junction endodeoxyribonuclease RuvC	NA	NA	NA	NA	NA
WP_003254768.1|1340099_1340717_+	Holliday junction branch migration protein RuvA	NA	NA	NA	NA	NA
WP_003254766.1|1340713_1341760_+	Holliday junction branch migration DNA helicase RuvB	NA	B3GAM6	uncultured_virus	27.4	7.9e-06
WP_014755590.1|1341885_1342338_+	tol-pal system-associated acyl-CoA thioesterase	NA	NA	NA	NA	NA
WP_010952367.1|1342340_1343036_+	protein TolQ	NA	NA	NA	NA	NA
WP_003254760.1|1343050_1343503_+	protein TolR	NA	NA	NA	NA	NA
WP_014755591.1|1343502_1344621_+	cell envelope integrity protein TolA	NA	NA	NA	NA	NA
WP_003254757.1|1344617_1345919_+	Tol-Pal system protein TolB	NA	NA	NA	NA	NA
WP_003254755.1|1345973_1346474_+	peptidoglycan-associated lipoprotein Pal	NA	NA	NA	NA	NA
WP_003254754.1|1346480_1347287_+	tol-pal system protein YbgF	NA	NA	NA	NA	NA
WP_003254753.1|1347455_1348103_+	7-carboxy-7-deazaguanine synthase QueE	NA	NA	NA	NA	NA
WP_076403786.1|1348102_1348795_+	7-cyano-7-deazaguanine synthase QueC	NA	A0A2H4J8Q7	uncultured_Caudovirales_phage	36.9	7.0e-27
WP_010952370.1|1349027_1349987_-	cation transporter	NA	NA	NA	NA	NA
WP_014755593.1|1350129_1352196_-	methyl-accepting chemotaxis protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	42.0	7.7e-29
WP_014755594.1|1352262_1353615_-	APC family permease	NA	NA	NA	NA	NA
WP_012051482.1|1354061_1355570_+	YdgA family protein	NA	NA	NA	NA	NA
WP_014755598.1|1355844_1356903_+	quinolinate synthase NadA	NA	NA	NA	NA	NA
WP_003254746.1|1357074_1358511_-	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_003254745.1|1358633_1358873_+	sulfurtransferase TusA family protein	NA	NA	NA	NA	NA
WP_003254744.1|1358893_1359964_+	AI-2E family transporter	NA	NA	NA	NA	NA
WP_014755600.1|1360080_1360554_-	peroxiredoxin	NA	NA	NA	NA	NA
WP_003254741.1|1360565_1361126_-	glycine cleavage system protein R	NA	NA	NA	NA	NA
WP_003254739.1|1361385_1362273_+	4-hydroxy-tetrahydrodipicolinate synthase	NA	NA	NA	NA	NA
WP_003254738.1|1362288_1363410_+	outer membrane protein assembly factor BamC	NA	NA	NA	NA	NA
WP_003254735.1|1363410_1364169_+	MBL fold metallo-hydrolase	NA	A8ATK9	Listeria_phage	30.5	1.2e-16
WP_003254733.1|1364199_1364910_+	phosphoribosylaminoimidazolesuccinocarboxamide synthase	NA	A0A0E3HI61	Synechococcus_phage	38.0	5.1e-41
WP_041167285.1|1365299_1366448_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014755603.1|1366405_1367677_-	DUF3596 domain-containing protein	NA	Q76UT6	Pseudomonas_virus	39.7	1.8e-41
WP_014755604.1|1367673_1367928_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014755606.1|1368156_1368624_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_158515024.1|1368998_1369349_-	restriction alleviation protein, Lar family	NA	NA	NA	NA	NA
WP_014755609.1|1369345_1369600_-	AAA family ATPase	NA	NA	NA	NA	NA
WP_014755610.1|1369596_1370094_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014755611.1|1370185_1370425_-	pyocin activator PrtN family protein	NA	A0A2H4J8B4	uncultured_Caudovirales_phage	55.8	8.6e-17
WP_110389087.1|1370421_1370898_-	hypothetical protein	NA	A0A2H4J897	uncultured_Caudovirales_phage	47.2	1.2e-09
WP_049806377.1|1371187_1371847_-	helix-turn-helix domain-containing protein	NA	A0A2H4J8I0	uncultured_Caudovirales_phage	55.2	6.9e-40
WP_014755615.1|1371944_1372142_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_014755616.1|1372360_1372849_+	hypothetical protein	NA	A0A2H4JFM0	uncultured_Caudovirales_phage	55.5	3.5e-33
WP_041167290.1|1372841_1373045_+	TraR/DksA C4-type zinc finger protein	NA	A0A2H4JDJ0	uncultured_Caudovirales_phage	67.6	3.3e-17
WP_014755617.1|1373041_1375801_+	bifunctional DNA primase/polymerase	NA	A0A2H4JF22	uncultured_Caudovirales_phage	65.3	0.0e+00
WP_080580359.1|1376125_1376677_+	hypothetical protein	NA	NA	NA	NA	NA
WP_041167291.1|1376881_1377229_+|holin	holin	holin	A0A2H4J893	uncultured_Caudovirales_phage	74.1	8.0e-40
WP_014755621.1|1377371_1377893_+|terminase	terminase small subunit	terminase	A0A2D1GMW4	Marinobacter_phage	39.9	9.6e-21
WP_193399786.1|1377936_1379823_+|terminase	phage terminase large subunit family protein	terminase	A0A2D1GMT1	Marinobacter_phage	50.2	4.7e-166
WP_014755623.1|1379835_1380051_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014755624.1|1380053_1381661_+|portal	phage portal protein	portal	A0A067ZJA4	Vibrio_phage	41.9	6.3e-95
WP_014755625.1|1381663_1382884_+	S49 family peptidase	NA	A0A219YB02	Aeromonas_phage	42.7	2.0e-48
WP_041167293.1|1382897_1383248_+|head	head decoration protein	head	A0A291AUM0	Sinorhizobium_phage	44.1	4.9e-13
WP_014755627.1|1383259_1384288_+|capsid	major capsid protein	capsid	A0A0C5ABI0	Bacteriophage	41.6	2.0e-70
WP_014755628.1|1384289_1384466_+	hypothetical protein	NA	NA	NA	NA	NA
WP_110389074.1|1384462_1384789_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014755630.1|1384785_1385454_+|tail	phage tail protein	tail	A0A2H4JBV1	uncultured_Caudovirales_phage	61.4	6.4e-70
WP_014755631.1|1385446_1385977_+	hypothetical protein	NA	A0A2H4J881	uncultured_Caudovirales_phage	48.7	4.5e-34
WP_014755632.1|1385973_1386576_+|plate	phage baseplate assembly protein V	plate	A0A2H4JG06	uncultured_Caudovirales_phage	67.1	2.1e-51
WP_014755633.1|1386618_1386888_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014755634.1|1386890_1387217_+	GPW/gp25 family protein	NA	A0A2H4JA09	uncultured_Caudovirales_phage	65.7	4.7e-34
WP_014755635.1|1387213_1388194_+|plate	baseplate J/gp47 family protein	plate	Q37840	Escherichia_phage	38.9	5.4e-49
WP_014755636.1|1388190_1389003_+|tail	phage tail protein I	tail	V5YTN0	Pseudomonas_phage	37.3	9.1e-18
WP_041167294.1|1388999_1389878_+|tail	phage tail protein	tail	A2I2X8	Vibrio_virus	38.8	1.6e-20
WP_014755638.1|1389884_1390625_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014755639.1|1390647_1391109_+	hypothetical protein	NA	A0A077K9S5	Ralstonia_phage	47.4	5.2e-18
WP_014755640.1|1391203_1392367_+|tail	phage tail sheath family protein	tail	A0A2H4J869	uncultured_Caudovirales_phage	85.0	2.1e-185
WP_014755641.1|1392379_1392889_+|tail	phage major tail tube protein	tail	Q7M2A5	Pseudomonas_phage	67.9	7.6e-63
WP_014755642.1|1392935_1393232_+|tail	phage tail assembly protein	tail	NA	NA	NA	NA
WP_014755643.1|1393364_1396754_+|tail	phage tail tape measure protein	tail	A0A2H4JG00	uncultured_Caudovirales_phage	32.8	6.4e-65
WP_014755644.1|1396763_1397609_+|tail	phage tail protein	tail	A0A2H4J875	uncultured_Caudovirales_phage	61.1	6.9e-93
WP_014755645.1|1397583_1397790_+|tail	tail protein X	tail	A0A2H4J9Z9	uncultured_Caudovirales_phage	62.7	6.7e-18
WP_014755646.1|1397848_1398892_+	phage late control protein	NA	A0A2H4JBF6	uncultured_Caudovirales_phage	72.6	1.2e-144
WP_014755647.1|1398931_1399501_+	glycoside hydrolase family 19 protein	NA	A0A2H4JHX4	uncultured_Caudovirales_phage	66.0	8.5e-63
WP_014755648.1|1399500_1400055_+|lysis	lysis protein	lysis	B5TK84	Pseudomonas_phage	47.8	2.5e-27
WP_041167295.1|1400206_1401001_+	DNA adenine methylase	NA	C7BGE1	Burkholderia_phage	65.0	1.2e-99
>prophage 4
NZ_CP015876	Pseudomonas putida SJTE-1 chromosome, complete genome	6077201	2058522	2069143	6077201	tRNA	uncultured_Caudovirales_phage(66.67%)	11	NA	NA
WP_010954808.1|2058522_2059803_+|tRNA	serine--tRNA ligase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	54.4	1.6e-96
WP_012051830.1|2059803_2061195_+	uroporphyrinogen-III C-methyltransferase	NA	NA	NA	NA	NA
WP_004576098.1|2061300_2062260_-	glutathione S-transferase family protein	NA	NA	NA	NA	NA
WP_014755969.1|2062354_2063356_-	glycosyl transferase family protein	NA	A0A2H4JBY5	uncultured_Caudovirales_phage	80.5	1.8e-156
WP_003251195.1|2063352_2063688_-	TusE/DsrC/DsvC family sulfur relay protein	NA	A0A2H4J8B6	uncultured_Caudovirales_phage	75.7	5.7e-43
WP_014755970.1|2063684_2063981_-	sulfurtransferase complex subunit TusB	NA	A0A2H4JG28	uncultured_Caudovirales_phage	58.6	3.4e-23
WP_010954803.1|2063980_2064340_-	sulfurtransferase complex subunit TusC	NA	A0A2H4J8C0	uncultured_Caudovirales_phage	66.7	8.6e-37
WP_003251188.1|2064341_2064734_-	sulfurtransferase complex subunit TusD	NA	A0A2H4JA39	uncultured_Caudovirales_phage	79.8	1.1e-53
WP_003251186.1|2064829_2066209_-	uracil-xanthine permease	NA	H9YQ34	environmental_Halophage	51.1	1.6e-27
WP_003251184.1|2066523_2067195_-	Bax inhibitor-1/YccA family protein	NA	A0A2H4JFM9	uncultured_Caudovirales_phage	91.0	2.1e-105
WP_012051834.1|2068375_2069143_+	3-oxoacyl-ACP reductase FabG	NA	A0A0M4JSW6	Mollivirus	23.7	3.3e-09
>prophage 5
NZ_CP015876	Pseudomonas putida SJTE-1 chromosome, complete genome	6077201	2155983	2220092	6077201	terminase,capsid,protease,holin,integrase,portal,tail,head	Pseudomonas_phage(50.0%)	82	2163639:2163654	2217166:2217181
WP_003251082.1|2155983_2156751_-	SDR family oxidoreductase	NA	Q06VL0	Trichoplusia_ni_ascovirus	31.3	5.0e-18
WP_014756053.1|2156787_2157855_-	phosphotransferase family protein	NA	NA	NA	NA	NA
WP_003251077.1|2158038_2158356_-	SCP2 sterol-binding domain-containing protein	NA	NA	NA	NA	NA
WP_014756055.1|2158412_2159123_-	histidine phosphatase family protein	NA	NA	NA	NA	NA
WP_014756056.1|2159320_2160340_+|protease	protease SohB	protease	A0A2H4UUF9	Bodo_saltans_virus	26.4	4.1e-23
WP_064590543.1|2160706_2161684_+|integrase	site-specific integrase	integrase	W6MYA3	Pseudomonas_phage	65.8	1.2e-117
WP_064590544.1|2161680_2161926_-	hypothetical protein	NA	B5WZU8	Pseudomonas_phage	68.8	4.3e-24
WP_064590545.1|2161954_2162197_-	hypothetical protein	NA	NA	NA	NA	NA
WP_193399787.1|2162206_2162383_-	hypothetical protein	NA	A0A2H4J7S3	uncultured_Caudovirales_phage	82.8	1.3e-22
WP_064590546.1|2162379_2162712_-	hypothetical protein	NA	NA	NA	NA	NA
WP_064590547.1|2162699_2163161_-	DUF2591 domain-containing protein	NA	A0A1B0VMD7	Pseudomonas_phage	34.4	5.0e-13
WP_064590548.1|2163435_2163687_-	hypothetical protein	NA	A0A2H4J399	uncultured_Caudovirales_phage	94.0	1.4e-38
2163639:2163654	attL	CGCTGGCGCCGGTGGC	NA	NA	NA	NA
WP_193399788.1|2163683_2163956_-	hypothetical protein	NA	A0A1B0VM42	Pseudomonas_phage	71.1	1.1e-33
WP_014859785.1|2164448_2164610_+	hypothetical protein	NA	NA	NA	NA	NA
WP_148661747.1|2164606_2165035_-	Lar family restriction alleviation protein	NA	NA	NA	NA	NA
WP_064590551.1|2165394_2167338_-	DNA cytosine methyltransferase	NA	Q5QF27	Pseudomonas_virus	71.5	2.1e-286
WP_148661748.1|2167522_2168110_+	hypothetical protein	NA	NA	NA	NA	NA
WP_064590552.1|2168089_2168842_-	phosphoadenosine phosphosulfate reductase family protein	NA	NA	NA	NA	NA
WP_020191955.1|2168929_2169127_+	hypothetical protein	NA	NA	NA	NA	NA
WP_064590553.1|2169435_2169690_+	hypothetical protein	NA	NA	NA	NA	NA
WP_064590554.1|2169886_2170294_+	hypothetical protein	NA	NA	NA	NA	NA
WP_064590555.1|2170349_2170733_-	hypothetical protein	NA	A0A0U4JNY7	Pseudomonas_phage	46.5	3.9e-27
WP_017147767.1|2170839_2171061_+	hypothetical protein	NA	NA	NA	NA	NA
WP_064590556.1|2171084_2171846_-	hypothetical protein	NA	A0A2H4J7T1	uncultured_Caudovirales_phage	83.8	2.7e-120
WP_148661749.1|2171956_2172721_+	hypothetical protein	NA	NA	NA	NA	NA
WP_064590558.1|2172784_2173243_-	hypothetical protein	NA	A0A2H4J101	uncultured_Caudovirales_phage	60.5	5.3e-47
WP_064590559.1|2173239_2173509_-	hypothetical protein	NA	NA	NA	NA	NA
WP_064590560.1|2173527_2173911_-	helix-turn-helix transcriptional regulator	NA	A0A0A0YWH0	Pseudomonas_phage	49.1	1.3e-19
WP_064590561.1|2173917_2174769_-	ParB N-terminal domain-containing protein	NA	A0A0U4JP11	Pseudomonas_phage	58.2	6.9e-85
WP_064590562.1|2174899_2175205_-	hypothetical protein	NA	NA	NA	NA	NA
WP_064590563.1|2175571_2175901_+	DUF1654 domain-containing protein	NA	A0A2D1GND3	Pseudomonas_phage	46.1	4.1e-17
WP_064590564.1|2175939_2178153_-	S8 family serine peptidase	NA	NA	NA	NA	NA
WP_064590565.1|2178157_2179249_-	AAA family ATPase	NA	R4TQL5	Phaeocystis_globosa_virus	28.7	4.3e-15
WP_064590566.1|2179368_2180256_-	helix-turn-helix domain-containing protein	NA	H2BD63	Pseudomonas_phage	38.4	2.7e-39
WP_064590567.1|2180360_2180567_+	Cro/Cl family transcriptional regulator	NA	NA	NA	NA	NA
WP_064590918.1|2180905_2181613_+	helix-turn-helix domain-containing protein	NA	J7I419	Pseudomonas_phage	54.9	2.0e-29
WP_064590568.1|2181605_2182985_+	replicative DNA helicase	NA	H2BD70	Pseudomonas_phage	53.1	8.2e-120
WP_053063471.1|2182993_2183200_+	hypothetical protein	NA	NA	NA	NA	NA
WP_064590569.1|2183181_2183478_+	DUF1364 domain-containing protein	NA	A5VW86	Enterobacteria_phage	68.8	5.8e-31
WP_064590570.1|2183474_2183900_+	VRR-NUC domain-containing protein	NA	A0A2D1GNH3	Pseudomonas_phage	65.6	3.4e-40
WP_017147914.1|2183896_2185195_+|integrase	site-specific integrase	integrase	A0A2D1GND4	Pseudomonas_phage	54.4	5.9e-120
WP_017147913.1|2185191_2185479_+	hypothetical protein	NA	NA	NA	NA	NA
WP_029611783.1|2185475_2185793_+	hypothetical protein	NA	A0A2D1GNG3	Pseudomonas_phage	61.0	4.0e-30
WP_064590571.1|2185805_2186492_+	hypothetical protein	NA	J7HXH6	Pseudomonas_phage	50.7	2.3e-54
WP_158515025.1|2186676_2187138_+	DUF2158 domain-containing protein	NA	NA	NA	NA	NA
WP_064590573.1|2187197_2187572_+	hypothetical protein	NA	A0A2H4J7X6	uncultured_Caudovirales_phage	87.9	7.8e-57
WP_064590574.1|2187572_2187854_+|holin	phage holin family protein	holin	A0A2H4J0H1	uncultured_Caudovirales_phage	94.6	2.2e-43
WP_064590575.1|2187853_2188192_+	HNH endonuclease	NA	A0A2D1GNP5	Pseudomonas_phage	56.0	7.3e-22
WP_064590576.1|2188349_2188850_+|terminase	terminase small subunit	terminase	A0A2H4J8R0	uncultured_Caudovirales_phage	38.5	4.6e-12
WP_064590577.1|2188853_2190533_+|terminase	terminase large subunit	terminase	A0A0N7KZG0	Stx2-converting_phage	61.5	2.5e-195
WP_020190891.1|2190683_2191982_+|portal	phage portal protein	portal	H2BDA8	Pseudomonas_virus	72.4	2.5e-187
WP_064590578.1|2191998_2192856_+|protease	Clp protease ClpP	protease	A0A1V0E8B8	Vibrio_phage	64.3	2.7e-97
WP_016485706.1|2192858_2194040_+|capsid	phage major capsid protein	capsid	A0A218MGA4	Pseudomonas_phage	60.9	3.7e-121
WP_158515026.1|2194088_2194631_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014756115.1|2194635_2194977_+|head,tail	phage gp6-like head-tail connector protein	head,tail	C4ML08	Xanthomonas_virus	39.1	5.7e-14
WP_081272902.1|2194973_2195300_+|head,tail	head-tail adaptor protein	head,tail	A0A2H4JC00	uncultured_Caudovirales_phage	48.2	7.3e-19
WP_019750982.1|2195308_2195479_+	hypothetical protein	NA	A0A2D1GNQ5	Pseudomonas_phage	53.7	1.4e-05
WP_064590579.1|2195482_2196058_+	HK97 gp10 family phage protein	NA	A0A2D1GNN2	Pseudomonas_phage	55.8	1.4e-52
WP_014756119.1|2196050_2196437_+	DUF3168 domain-containing protein	NA	A0A2D1GNT4	Pseudomonas_phage	84.4	5.2e-56
WP_014756120.1|2196493_2196994_+	hypothetical protein	NA	A0A2D1GNF2	Pseudomonas_phage	75.8	2.0e-68
WP_064590580.1|2197034_2197379_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014756122.1|2197375_2197612_+	hypothetical protein	NA	NA	NA	NA	NA
WP_064590581.1|2197657_2200948_+|tail	phage tail tape measure protein	tail	A0A2D1GNQ1	Pseudomonas_phage	37.0	2.4e-72
WP_014756124.1|2200947_2201286_+|tail	phage tail protein	tail	I6PBN7	Cronobacter_phage	38.8	6.0e-16
WP_014756125.1|2201282_2202032_+|tail	phage minor tail protein L	tail	A0A0S2SY57	Pseudomonas_phage	77.1	1.1e-121
WP_019750984.1|2202034_2202790_+	C40 family peptidase	NA	A0A2H4J1J7	uncultured_Caudovirales_phage	76.9	6.9e-121
WP_014756127.1|2202786_2203380_+|tail	tail assembly protein	tail	A0A2H4J1H0	uncultured_Caudovirales_phage	73.5	8.0e-72
WP_081272903.1|2203436_2210690_+|tail	phage tail protein	tail	A0A2H4J8Z6	uncultured_Caudovirales_phage	66.7	0.0e+00
WP_064590582.1|2210686_2211067_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019750987.1|2211050_2211221_+	hypothetical protein	NA	NA	NA	NA	NA
WP_064590583.1|2211281_2211503_+	hypothetical protein	NA	NA	NA	NA	NA
WP_020189967.1|2212202_2212556_-	YceK/YidQ family lipoprotein	NA	NA	NA	NA	NA
WP_064590584.1|2212921_2213410_+	glycoside hydrolase family 104 protein	NA	Q9MC90	Pseudomonas_phage	48.1	9.9e-36
WP_064590585.1|2213406_2213919_+	DUF2514 family protein	NA	NA	NA	NA	NA
WP_064590586.1|2214154_2214379_+	hypothetical protein	NA	A0A2H4JG60	uncultured_Caudovirales_phage	82.4	3.5e-28
WP_017147736.1|2214452_2214746_+	hypothetical protein	NA	A0A2H4JER5	uncultured_Caudovirales_phage	67.0	1.4e-32
WP_017147901.1|2214742_2215048_+	hypothetical protein	NA	NA	NA	NA	NA
WP_064590587.1|2215234_2215579_-	hypothetical protein	NA	NA	NA	NA	NA
WP_041167305.1|2216084_2217134_-|integrase	tyrosine-type recombinase/integrase	integrase	A0A2H4JDJ8	uncultured_Caudovirales_phage	56.9	2.2e-101
WP_014756148.1|2217135_2217432_-	hypothetical protein	NA	A0A059VF56	Pseudomonas_phage	61.7	2.5e-05
2217166:2217181	attR	CGCTGGCGCCGGTGGC	NA	NA	NA	NA
WP_014756149.1|2217543_2218074_+	putative mannitol operon repressor	NA	NA	NA	NA	NA
WP_064590588.1|2218148_2220092_-	DNA cytosine methyltransferase	NA	Q5QF27	Pseudomonas_virus	72.6	9.7e-292
>prophage 6
NZ_CP015876	Pseudomonas putida SJTE-1 chromosome, complete genome	6077201	2500750	2506906	6077201		uncultured_Caudovirales_phage(66.67%)	9	NA	NA
WP_012052738.1|2500750_2501452_-	arsenical resistance protein ArsH	NA	A0A2H4J5V6	uncultured_Caudovirales_phage	79.0	3.2e-104
WP_012052737.1|2501465_2501936_-	arsenate reductase ArsC	NA	A0A2H4J8A6	uncultured_Caudovirales_phage	69.2	5.7e-57
WP_014756341.1|2501965_2503249_-	arsenic transporter	NA	A0A2H4J144	uncultured_Caudovirales_phage	75.8	2.0e-176
WP_014756342.1|2503270_2503618_-	metalloregulator ArsR/SmtB family transcription factor	NA	A0A2H4J145	uncultured_Caudovirales_phage	61.9	1.7e-34
WP_017147688.1|2503830_2504004_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014756344.1|2504099_2504564_-	hemerythrin domain-containing protein	NA	NA	NA	NA	NA
WP_017147687.1|2504733_2505591_-	glucose 1-dehydrogenase	NA	A0A2N9QUX2	Trichoplusia_ni_ascovirus	50.5	1.7e-70
WP_010953640.1|2505785_2506310_+	hypothetical protein	NA	NA	NA	NA	NA
WP_029611751.1|2506366_2506906_-	type 1 glutamine amidotransferase	NA	A0A0N7KVR4	Yellowstone_lake_phycodnavirus	34.3	3.8e-20
>prophage 7
NZ_CP015876	Pseudomonas putida SJTE-1 chromosome, complete genome	6077201	3023145	3076168	6077201	transposase,protease,integrase	Ostreococcus_tauri_virus(25.0%)	52	3071876:3071891	3083498:3083513
WP_017148342.1|3023145_3024987_-|protease	ATP-dependent zinc metalloprotease FtsH	protease	C7U047	Ostreococcus_tauri_virus	40.8	7.9e-94
WP_012052281.1|3025013_3025661_-	BON domain-containing protein	NA	NA	NA	NA	NA
WP_012052280.1|3025849_3026104_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012052279.1|3026110_3028393_+	heavy metal translocating P-type ATPase	NA	E4ZFI9	Streptococcus_phage	29.5	3.3e-57
WP_012052278.1|3028554_3029445_+	universal stress protein	NA	NA	NA	NA	NA
WP_014756736.1|3029459_3029585_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012052277.1|3029663_3030542_+	universal stress protein	NA	NA	NA	NA	NA
WP_012052276.1|3030543_3031116_-	phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_014756737.1|3031431_3032613_+	cation:proton antiporter	NA	NA	NA	NA	NA
WP_017148341.1|3033042_3033480_+	YeeE/YedE family protein	NA	NA	NA	NA	NA
WP_012052273.1|3033481_3033910_+	membrane protein	NA	NA	NA	NA	NA
WP_041167320.1|3035492_3036461_-	DNA-binding protein	NA	NA	NA	NA	NA
WP_064590590.1|3036590_3037670_-|integrase	tyrosine-type recombinase/integrase	integrase	NA	NA	NA	NA
WP_148661752.1|3038068_3038719_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014756746.1|3038708_3040667_+	hypothetical protein	NA	NA	NA	NA	NA
WP_110389090.1|3040687_3041641_+	ATP-binding protein	NA	NA	NA	NA	NA
WP_014756748.1|3041646_3043089_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014756749.1|3043097_3043514_-	hypothetical protein	NA	NA	NA	NA	NA
WP_041167323.1|3043604_3043877_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_041167324.1|3044452_3045544_-|integrase	site-specific integrase	integrase	NA	NA	NA	NA
WP_014756755.1|3046818_3047991_-	amidohydrolase	NA	NA	NA	NA	NA
WP_041167325.1|3047994_3049284_-	MFS transporter	NA	Q6JIH2	Burkholderia_virus	37.0	2.0e-67
WP_014756758.1|3049621_3050539_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_041167326.1|3050680_3051598_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014756762.1|3051648_3052326_-	phospholipase	NA	NA	NA	NA	NA
WP_041167327.1|3052318_3053161_-	dioxygenase	NA	NA	NA	NA	NA
WP_014756764.1|3053181_3053811_-	NADPH-dependent F420 reductase	NA	NA	NA	NA	NA
WP_014756765.1|3054045_3055002_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_014756766.1|3055086_3055701_-	nitroreductase family protein	NA	NA	NA	NA	NA
WP_014756767.1|3055724_3056078_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014756768.1|3056154_3056352_-	4-oxalocrotonate tautomerase family protein	NA	NA	NA	NA	NA
WP_014756769.1|3056664_3057066_-	DoxX family protein	NA	NA	NA	NA	NA
WP_014756770.1|3057204_3058104_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014756771.1|3058260_3059055_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_014756772.1|3059098_3060085_-	LLM class flavin-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_041167328.1|3060139_3060949_-	TIM barrel protein	NA	NA	NA	NA	NA
WP_041167329.1|3060972_3061773_-	TIM barrel protein	NA	NA	NA	NA	NA
WP_014861923.1|3061796_3062789_-	LLM class oxidoreductase	NA	NA	NA	NA	NA
WP_041167392.1|3062930_3063824_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_041167393.1|3063843_3064170_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_014756779.1|3064241_3065162_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014756780.1|3065178_3066051_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_041167330.1|3066198_3067320_+	muconate cycloisomerase family protein	NA	NA	NA	NA	NA
WP_014756783.1|3067343_3067634_+	muconolactone Delta-isomerase	NA	NA	NA	NA	NA
WP_014756784.1|3067683_3068619_+	catechol 1,2-dioxygenase	NA	NA	NA	NA	NA
WP_014819629.1|3069480_3070770_-|transposase	ISL3-like element ISPpu12 family transposase	transposase	A0A2D1GQC1	Lysinibacillus_phage	40.4	3.6e-85
WP_004863699.1|3070791_3071304_-	signal peptidase II	NA	NA	NA	NA	NA
WP_004364974.1|3071307_3072204_-	cation transporter	NA	NA	NA	NA	NA
3071876:3071891	attL	TCGGCGGCCTTGATGG	NA	NA	NA	NA
WP_009403731.1|3072299_3072707_+	Cd(II)/Pb(II)-responsive transcriptional regulator	NA	NA	NA	NA	NA
WP_080580404.1|3072946_3073339_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_041167331.1|3073623_3074916_-|integrase	integrase	integrase	NA	NA	NA	NA
WP_080580405.1|3075037_3076168_-|integrase	integrase	integrase	NA	NA	NA	NA
3083498:3083513	attR	TCGGCGGCCTTGATGG	NA	NA	NA	NA
>prophage 8
NZ_CP015876	Pseudomonas putida SJTE-1 chromosome, complete genome	6077201	3644483	3692458	6077201	terminase,integrase,tail,holin	uncultured_Caudovirales_phage(45.83%)	67	3652079:3652094	3694691:3694706
WP_064590598.1|3644483_3647537_-	hypothetical protein	NA	B5WZT8	Pseudomonas_phage	41.4	1.7e-221
WP_064590599.1|3647533_3647911_-	hypothetical protein	NA	B5WZT7	Pseudomonas_phage	44.1	1.2e-25
WP_064590600.1|3647913_3648393_-	DUF1833 family protein	NA	J7I404	Pseudomonas_phage	40.8	8.5e-24
WP_064590601.1|3648389_3648842_-	hypothetical protein	NA	A0A2H4PI05	Pseudomonas_phage	27.0	4.6e-11
WP_019751376.1|3648868_3649015_-	hypothetical protein	NA	NA	NA	NA	NA
WP_064590602.1|3649101_3649548_-	hypothetical protein	NA	NA	NA	NA	NA
WP_064590603.1|3649615_3652546_-|tail	phage tail length tape measure family protein	tail	A0A2H4J9A1	uncultured_Caudovirales_phage	36.9	1.4e-108
3652079:3652094	attL	GCCCTGCTGCAGGAAT	NA	NA	NA	NA
WP_064590604.1|3652603_3652903_-	hypothetical protein	NA	NA	NA	NA	NA
WP_064590605.1|3652950_3653205_-	hypothetical protein	NA	NA	NA	NA	NA
WP_017147745.1|3653312_3653798_-	hypothetical protein	NA	NA	NA	NA	NA
WP_017147746.1|3653855_3655025_-	Ig domain-containing protein	NA	A0A2C9CX52	Yersinia_phage	57.6	1.4e-06
WP_017147747.1|3655086_3655494_-	hypothetical protein	NA	NA	NA	NA	NA
WP_064590606.1|3655490_3655889_-	hypothetical protein	NA	A0A059VF88	Pseudomonas_phage	54.5	3.5e-31
WP_064590607.1|3655888_3656275_-	hypothetical protein	NA	A0A059VA70	Pseudomonas_phage	48.4	5.3e-24
WP_148661753.1|3656231_3657263_-	hypothetical protein	NA	A0A2H4IY91	uncultured_Caudovirales_phage	49.1	9.6e-89
WP_064590609.1|3657259_3657778_-	hypothetical protein	NA	A0A059VG19	Pseudomonas_phage	54.0	9.5e-37
WP_064590610.1|3657820_3658201_-	hypothetical protein	NA	A0A2H4J908	uncultured_Caudovirales_phage	56.2	1.6e-20
WP_064590611.1|3658213_3659173_-	DUF2184 domain-containing protein	NA	A0A2H4J526	uncultured_Caudovirales_phage	82.9	9.7e-152
WP_064590612.1|3659191_3659677_-	hypothetical protein	NA	A0A2H4J1G1	uncultured_Caudovirales_phage	63.2	1.2e-44
WP_064590613.1|3659689_3660823_-	DUF2213 domain-containing protein	NA	A0A2H4J6J7	uncultured_Caudovirales_phage	70.9	3.3e-143
WP_064590616.1|3660831_3662628_-	DUF1073 domain-containing protein	NA	A0A2H4J4I9	uncultured_Caudovirales_phage	60.0	8.0e-208
WP_064590618.1|3662627_3663914_-|terminase	terminase	terminase	A0A1B1P9C9	Acinetobacter_phage	58.6	2.6e-144
WP_064590620.1|3663900_3664362_-	DUF2280 domain-containing protein	NA	A0A1B0VMH2	Pseudomonas_phage	74.0	4.0e-47
WP_064590622.1|3664392_3664989_-	hypothetical protein	NA	A0A0S2SYA5	Pseudomonas_phage	75.8	1.5e-86
WP_064590625.1|3664997_3665210_-	hypothetical protein	NA	A0A2H4J0Y9	uncultured_Caudovirales_phage	71.4	7.3e-20
WP_017148061.1|3665213_3665447_-	hypothetical protein	NA	NA	NA	NA	NA
WP_064590627.1|3665506_3665824_-|holin	phage holin family protein	holin	NA	NA	NA	NA
WP_064590629.1|3665820_3666210_-	hypothetical protein	NA	A0A2H4J7X6	uncultured_Caudovirales_phage	42.9	6.1e-20
WP_064590631.1|3666220_3666484_-	hypothetical protein	NA	NA	NA	NA	NA
WP_064590632.1|3666615_3667206_-	hypothetical protein	NA	A0A0S2SYA9	Pseudomonas_phage	57.0	1.1e-62
WP_017147753.1|3667324_3667927_-	recombination protein NinG	NA	A0A0U1VZM0	Pseudomonas_phage	54.3	4.2e-52
WP_016487776.1|3667926_3668325_-	recombination protein NinB	NA	A0A059VG13	Pseudomonas_phage	85.6	2.7e-63
WP_064590634.1|3668317_3668578_-	hypothetical protein	NA	A0A2H4J105	uncultured_Caudovirales_phage	64.7	6.4e-26
WP_017147756.1|3668574_3668889_-	hypothetical protein	NA	A0A2H4JG78	uncultured_Caudovirales_phage	37.5	1.1e-06
WP_064590636.1|3668888_3669614_-	Replication protein P	NA	A0A2H4J1T4	uncultured_Caudovirales_phage	71.5	1.4e-86
WP_064590639.1|3670763_3671564_-	Rha family transcriptional regulator	NA	F1C5A3	Cronobacter_phage	48.2	8.6e-37
WP_014859733.1|3671664_3671877_-	hypothetical protein	NA	A0A2H4IZI7	uncultured_Caudovirales_phage	64.7	3.4e-17
WP_059395556.1|3671895_3672105_-	hypothetical protein	NA	W6MW47	Pseudomonas_phage	68.1	7.2e-20
WP_059395557.1|3672134_3672311_-	Cro/Cl family transcriptional regulator	NA	R9TPV3	Vibrio_phage	55.1	2.6e-07
WP_059395558.1|3672419_3673088_+	helix-turn-helix domain-containing protein	NA	A0A2H4J868	uncultured_Caudovirales_phage	63.6	2.8e-49
WP_064590641.1|3673096_3673348_+	hypothetical protein	NA	NA	NA	NA	NA
WP_064590643.1|3673546_3674461_+	hypothetical protein	NA	A0A1R3Y6Z6	Salmonella_virus	40.2	2.0e-50
WP_059395562.1|3674652_3675144_+	hypothetical protein	NA	NA	NA	NA	NA
WP_064590645.1|3675195_3675804_-	hypothetical protein	NA	NA	NA	NA	NA
WP_064590647.1|3676333_3676519_+	hypothetical protein	NA	A0A2H4JG89	uncultured_Caudovirales_phage	85.2	2.0e-21
WP_158515030.1|3677375_3677777_+	hypothetical protein	NA	A0A088C3M9	Shewanella_sp._phage	43.5	1.5e-18
WP_017147760.1|3677987_3678404_+	hypothetical protein	NA	NA	NA	NA	NA
WP_064590652.1|3678400_3678595_+	hypothetical protein	NA	A0A1B0VMB8	Pseudomonas_phage	59.7	2.1e-13
WP_064590654.1|3678591_3679167_+	hypothetical protein	NA	A0A0C7U2Q1	Pseudomonas_phage	33.0	3.0e-15
WP_064590656.1|3679163_3679385_+	hypothetical protein	NA	A0A2H4J1S2	uncultured_Caudovirales_phage	55.6	6.9e-13
WP_064590658.1|3679374_3679830_+	hypothetical protein	NA	NA	NA	NA	NA
WP_017147762.1|3680117_3680849_+	hypothetical protein	NA	A0A2H4J2D5	uncultured_Caudovirales_phage	94.7	3.4e-125
WP_017147763.1|3680845_3681409_+	siphovirus Gp157 family protein	NA	A0A2H4IZG3	uncultured_Caudovirales_phage	93.6	1.5e-91
WP_017147764.1|3681416_3681929_+	hypothetical protein	NA	A0A2H4J7C8	uncultured_Caudovirales_phage	35.5	1.2e-12
WP_158515031.1|3682187_3682562_-	hypothetical protein	NA	NA	NA	NA	NA
WP_017147766.1|3682695_3682947_-	hypothetical protein	NA	NA	NA	NA	NA
WP_064590660.1|3683014_3683641_+	hypothetical protein	NA	J9Q748	Salmonella_phage	29.6	9.5e-15
WP_162493564.1|3683695_3684451_-	DUF2971 domain-containing protein	NA	NA	NA	NA	NA
WP_064590662.1|3686059_3686284_-	hypothetical protein	NA	NA	NA	NA	NA
WP_064590663.1|3686426_3687086_+	hypothetical protein	NA	Q5QF30	Pseudomonas_virus	46.9	2.1e-44
WP_064590666.1|3687082_3687331_+	hypothetical protein	NA	A0A2H4J399	uncultured_Caudovirales_phage	96.4	6.3e-39
WP_064590667.1|3687327_3687840_+	hypothetical protein	NA	A0A1B0VM38	Pseudomonas_phage	57.1	7.0e-08
WP_064590669.1|3687836_3688229_+	DUF2591 family protein	NA	A0A1B0VMD7	Pseudomonas_phage	34.8	8.0e-12
WP_064590671.1|3688225_3688561_+	hypothetical protein	NA	NA	NA	NA	NA
WP_172402816.1|3689139_3689316_+	hypothetical protein	NA	A0A2H4J7S3	uncultured_Caudovirales_phage	86.2	2.0e-23
WP_019438786.1|3689605_3690784_+|integrase	tyrosine-type recombinase/integrase	integrase	A0A059VF45	Pseudomonas_phage	70.4	3.1e-160
WP_064590676.1|3691093_3692458_+|integrase	site-specific integrase	integrase	A0A2H4IYX8	uncultured_Caudovirales_phage	67.9	1.3e-170
3694691:3694706	attR	GCCCTGCTGCAGGAAT	NA	NA	NA	NA
>prophage 9
NZ_CP015876	Pseudomonas putida SJTE-1 chromosome, complete genome	6077201	3876843	3913043	6077201	protease,coat	Ectocarpus_siliculosus_virus(66.67%)	31	NA	NA
WP_003250377.1|3876843_3877815_-|coat	spore coat protein U domain-containing protein	coat	NA	NA	NA	NA
WP_014753811.1|3877811_3880109_-	fimbrial biogenesis outer membrane usher protein	NA	NA	NA	NA	NA
WP_017147731.1|3880217_3880994_-	molecular chaperone	NA	NA	NA	NA	NA
WP_017147732.1|3881034_3881538_-|coat	spore coat protein U domain-containing protein	coat	NA	NA	NA	NA
WP_012052960.1|3881541_3882075_-|coat	spore coat protein U domain-containing protein	coat	NA	NA	NA	NA
WP_012052961.1|3882093_3882630_-|coat	spore coat protein U domain-containing protein	coat	NA	NA	NA	NA
WP_017147733.1|3882660_3883188_-|coat	spore coat protein U domain-containing protein	coat	NA	NA	NA	NA
WP_017147734.1|3883455_3885702_+	GAF domain-containing protein	NA	Q8QNA6	Ectocarpus_siliculosus_virus	22.8	2.4e-20
WP_003250360.1|3885717_3886179_+	response regulator	NA	NA	NA	NA	NA
WP_014753816.1|3886192_3888580_+	response regulator	NA	Q8QNA2	Ectocarpus_siliculosus_virus	28.6	1.9e-10
WP_012052965.1|3889030_3889273_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014753817.1|3889405_3890476_+	cell division protein ZapE	NA	NA	NA	NA	NA
WP_014753818.1|3890547_3892437_-	propionyl-CoA synthetase	NA	A0A2H4PQU7	Staphylococcus_phage	29.7	9.7e-55
WP_004573884.1|3892617_3893484_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014753820.1|3893457_3894612_-	HPP family protein	NA	NA	NA	NA	NA
WP_012052970.1|3894931_3896251_-	sensor histidine kinase	NA	NA	NA	NA	NA
WP_014591651.1|3896247_3896916_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_014753821.1|3896916_3897231_-	PepSY domain-containing protein	NA	NA	NA	NA	NA
WP_014753822.1|3897230_3897539_-	PepSY domain-containing protein	NA	NA	NA	NA	NA
WP_004573881.1|3897758_3898838_+	patatin-like phospholipase family protein	NA	NA	NA	NA	NA
WP_012053047.1|3898891_3899248_+	6-carboxytetrahydropterin synthase QueD	NA	NA	NA	NA	NA
WP_014753823.1|3899274_3900036_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012053049.1|3900103_3900571_-	DUF1289 domain-containing protein	NA	NA	NA	NA	NA
WP_012053050.1|3900976_3903586_+	bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase	NA	NA	NA	NA	NA
WP_014753825.1|3903660_3905145_-	2-methylcitrate dehydratase	NA	NA	NA	NA	NA
WP_017147771.1|3905316_3906507_-	2-methylaconitate cis-trans isomerase PrpF	NA	NA	NA	NA	NA
WP_017147772.1|3906658_3909247_-	Fe/S-dependent 2-methylisocitrate dehydratase AcnD	NA	NA	NA	NA	NA
WP_003250313.1|3909408_3910536_-	2-methylcitrate synthase	NA	NA	NA	NA	NA
WP_012053054.1|3910596_3911487_-	methylisocitrate lyase	NA	NA	NA	NA	NA
WP_003250308.1|3911483_3912200_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010953297.1|3912506_3913043_+|protease	ATP-dependent zinc protease	protease	NA	NA	NA	NA
>prophage 10
NZ_CP015876	Pseudomonas putida SJTE-1 chromosome, complete genome	6077201	3962840	3989288	6077201	tail,head	Ralstonia_phage(73.68%)	30	NA	NA
WP_064590806.1|3962840_3965030_-	hypothetical protein	NA	A0A2D2W5A9	Ralstonia_phage	50.6	7.8e-181
WP_060518953.1|3965039_3965600_-	hypothetical protein	NA	NA	NA	NA	NA
WP_064590809.1|3965584_3965998_-	hypothetical protein	NA	NA	NA	NA	NA
WP_193399784.1|3966053_3968273_-	hypothetical protein	NA	A0A2D2W513	Ralstonia_phage	53.6	5.6e-227
WP_060518957.1|3968402_3968990_-	hypothetical protein	NA	A0A2R2ZGD2	Ralstonia_phage	50.3	1.0e-47
WP_064590813.1|3969051_3970020_-	hypothetical protein	NA	L7TJ83	Rhizobium_phage	56.7	5.6e-91
WP_064590815.1|3970180_3970381_-	hypothetical protein	NA	NA	NA	NA	NA
WP_049587553.1|3970395_3970836_-	DUF1353 domain-containing protein	NA	A0A2K9VHJ4	Pseudomonas_phage	50.8	2.4e-25
WP_193399785.1|3970863_3971583_-	hypothetical protein	NA	A0A2D2W594	Ralstonia_phage	45.8	5.4e-46
WP_064590825.1|3971781_3973356_-|head,tail	head-tail connector protein	head,tail	A0A2R2ZGG8	Ralstonia_phage	60.3	2.1e-164
WP_010953250.1|3973583_3973778_-	hypothetical protein	NA	NA	NA	NA	NA
WP_148661757.1|3973832_3975218_-	hypothetical protein	NA	NA	NA	NA	NA
WP_081272918.1|3975228_3975483_-	DUF3310 domain-containing protein	NA	Q774Z7	Bordetella_phage	55.2	4.8e-10
WP_061405618.1|3975501_3976254_-	putative phage exonuclease	NA	A0A2R2ZGE9	Ralstonia_phage	59.6	1.7e-82
WP_064590830.1|3976202_3976412_-	hypothetical protein	NA	NA	NA	NA	NA
WP_009682626.1|3976446_3976662_-	hypothetical protein	NA	A0A2R2ZGG1	Ralstonia_phage	67.2	1.6e-17
WP_064590832.1|3976675_3978727_-	DNA polymerase	NA	A0A2R2ZGG6	Ralstonia_phage	58.6	5.2e-219
WP_064590834.1|3978738_3978933_-	hypothetical protein	NA	NA	NA	NA	NA
WP_064590835.1|3978922_3979528_-	hypothetical protein	NA	A0A2D2W501	Ralstonia_phage	56.2	2.9e-45
WP_155952727.1|3979543_3979711_-	hypothetical protein	NA	NA	NA	NA	NA
WP_148661758.1|3979767_3979962_-	hypothetical protein	NA	NA	NA	NA	NA
WP_064590837.1|3979965_3980415_-	hypothetical protein	NA	NA	NA	NA	NA
WP_028692660.1|3980418_3980646_-	hypothetical protein	NA	NA	NA	NA	NA
WP_158515033.1|3980660_3982112_-	toprim domain-containing protein	NA	L7TLT7	Rhizobium_phage	62.7	1.1e-178
WP_064590841.1|3982383_3982833_-	N-acetylmuramoyl-L-alanine amidase	NA	A0A2R2ZGC0	Ralstonia_phage	73.0	1.1e-62
WP_064590843.1|3982835_3983261_-	endodeoxyribonuclease	NA	A0A2D2W4Y6	Ralstonia_phage	71.0	2.1e-50
WP_028692663.1|3983283_3983997_-	single-stranded DNA-binding protein	NA	A0A2R2ZGF7	Ralstonia_phage	62.2	7.9e-66
WP_009682639.1|3984024_3984201_-	hypothetical protein	NA	A0A2D2W4Y9	Ralstonia_phage	58.3	8.2e-09
WP_064590845.1|3984722_3987281_-	DNA-dependent RNA polymerase	NA	A0A2R2ZGE5	Ralstonia_phage	64.9	0.0e+00
WP_003250234.1|3988433_3989288_+	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	NA	A0A249XZQ2	Enterococcus_phage	34.6	2.4e-29
>prophage 11
NZ_CP015876	Pseudomonas putida SJTE-1 chromosome, complete genome	6077201	5174823	5255896	6077201	terminase,capsid,tRNA,protease,holin,integrase,portal,tail,head	Pseudomonas_phage(40.0%)	87	5178948:5178965	5260161:5260178
WP_012053746.1|5174823_5175741_-|tRNA	tRNA pseudouridine(55) synthase TruB	tRNA	NA	NA	NA	NA
WP_003249967.1|5175744_5176143_-	30S ribosome-binding factor RbfA	NA	NA	NA	NA	NA
WP_004575779.1|5176259_5178800_-	translation initiation factor IF-2	NA	A0A2H4UTS4	Bodo_saltans_virus	23.2	2.9e-22
WP_003249963.1|5178827_5180309_-	transcription termination/antitermination protein NusA	NA	NA	NA	NA	NA
5178948:5178965	attL	GCCGCGCACCGCCAGTTC	NA	NA	NA	NA
WP_003249960.1|5180368_5180827_-	ribosome maturation factor RimP	NA	NA	NA	NA	NA
WP_003249958.1|5181240_5181639_-	preprotein translocase subunit SecG	NA	NA	NA	NA	NA
WP_003249956.1|5181643_5182399_-	triose-phosphate isomerase	NA	NA	NA	NA	NA
WP_012053747.1|5182464_5183805_-	phosphoglucosamine mutase	NA	NA	NA	NA	NA
WP_012053748.1|5183821_5184673_-	dihydropteroate synthase	NA	NA	NA	NA	NA
WP_012053749.1|5184681_5186586_-|protease	ATP-dependent zinc metalloprotease FtsH	protease	I3UL75	Ostreococcus_lucimarinus_virus	47.8	1.2e-113
WP_003249947.1|5186792_5187416_-	23S rRNA (uridine(2552)-2'-O)-methyltransferase RlmE	NA	NA	NA	NA	NA
WP_003249945.1|5187518_5187827_+	ribosome assembly RNA-binding protein YhbY	NA	NA	NA	NA	NA
WP_012053750.1|5187839_5188289_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003249939.1|5188266_5188749_-	transcription elongation factor GreA	NA	NA	NA	NA	NA
WP_003249937.1|5188745_5191967_-	carbamoyl-phosphate synthase large subunit	NA	NA	NA	NA	NA
WP_003249935.1|5192072_5193209_-	glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit	NA	R4TGJ8	Halovirus	32.0	2.1e-44
WP_012053753.1|5193535_5194339_-	4-hydroxy-tetrahydrodipicolinate reductase	NA	NA	NA	NA	NA
WP_003249931.1|5194352_5195477_-	molecular chaperone DnaJ	NA	E3T4P7	Cafeteria_roenbergensis_virus	35.6	1.2e-23
WP_010955366.1|5195674_5197600_-	molecular chaperone DnaK	NA	A0A2P1EIW2	Megavirus	49.4	3.7e-150
WP_012053755.1|5197701_5198259_-	nucleotide exchange factor GrpE	NA	NA	NA	NA	NA
WP_004575778.1|5198451_5200125_+	DNA repair protein RecN	NA	NA	NA	NA	NA
WP_003249922.1|5200443_5200848_-	ferric iron uptake transcriptional regulator	NA	NA	NA	NA	NA
WP_003249918.1|5200945_5201482_+	outer membrane protein assembly factor BamE	NA	NA	NA	NA	NA
WP_014592414.1|5201545_5201980_-	type II toxin-antitoxin system RatA family toxin	NA	NA	NA	NA	NA
WP_003249914.1|5202143_5202626_+	SsrA-binding protein SmpB	NA	W5RAM5	Staphylococcus_phage	42.7	1.2e-25
WP_003249911.1|5202758_5203526_-	FCD domain-containing protein	NA	NA	NA	NA	NA
WP_003249910.1|5203782_5205453_+	lactate permease LctP family transporter	NA	NA	NA	NA	NA
WP_014754483.1|5205515_5206661_+	FMN-dependent L-lactate dehydrogenase LldD	NA	NA	NA	NA	NA
WP_014754484.1|5206736_5209547_+	FAD-binding oxidoreductase	NA	NA	NA	NA	NA
WP_014754485.1|5210171_5210462_+	hypothetical protein	NA	NA	NA	NA	NA
WP_125855627.1|5211156_5211444_+	transcriptional regulator	NA	NA	NA	NA	NA
WP_064590890.1|5211440_5211806_+	hypothetical protein	NA	NA	NA	NA	NA
WP_050492245.1|5211823_5212108_-	hypothetical protein	NA	H2BDA1	Pseudomonas_phage	63.1	1.3e-19
WP_064590892.1|5212104_5212488_-	hypothetical protein	NA	J7HXL1	Pseudomonas_phage	54.2	1.8e-24
WP_017147738.1|5212484_5212931_-	structural protein	NA	A0A2R3UAM8	Myoviridae_environmental_samples	53.4	7.2e-33
WP_024718023.1|5212991_5213216_-	hypothetical protein	NA	NA	NA	NA	NA
WP_148661763.1|5213233_5214088_-	hypothetical protein	NA	NA	NA	NA	NA
WP_081272926.1|5214489_5220903_-	DUF1983 domain-containing protein	NA	A0A2H4J0B1	uncultured_Caudovirales_phage	72.0	0.0e+00
WP_029885594.1|5221304_5221907_-	hypothetical protein	NA	A0A2H4J0R3	uncultured_Caudovirales_phage	87.0	2.3e-103
WP_029885593.1|5221906_5222491_-	hypothetical protein	NA	A0A2H4IYI9	uncultured_Caudovirales_phage	55.2	2.6e-59
WP_029885592.1|5222532_5225748_-|tail	phage tail tape measure protein	tail	A0A2D1GNQ1	Pseudomonas_phage	35.6	1.4e-93
WP_125920177.1|5225804_5226131_-	hypothetical protein	NA	NA	NA	NA	NA
WP_029885590.1|5226437_5226767_-	hypothetical protein	NA	A0A2D1GNT5	Pseudomonas_phage	62.4	7.9e-29
WP_029885589.1|5226779_5227277_-	hypothetical protein	NA	A0A2D1GNF2	Pseudomonas_phage	80.6	1.1e-71
WP_029885588.1|5227331_5227718_-	DUF3168 domain-containing protein	NA	A0A2D1GNT4	Pseudomonas_phage	85.9	4.4e-55
WP_029885587.1|5227710_5228211_-	HK97 gp10 family phage protein	NA	A0A2D1GNN2	Pseudomonas_phage	70.9	4.0e-64
WP_009681825.1|5228214_5228385_-	hypothetical protein	NA	NA	NA	NA	NA
WP_029885586.1|5228393_5228720_-|head	phage head closure protein	head	A0A2D1GNG1	Pseudomonas_phage	62.1	5.2e-25
WP_029885585.1|5228719_5229016_-|head,tail	phage gp6-like head-tail connector protein	head,tail	A0A2H4J8C5	uncultured_Caudovirales_phage	71.7	4.3e-34
WP_033744421.1|5229016_5229268_-	hypothetical protein	NA	NA	NA	NA	NA
WP_029885583.1|5229319_5230522_-|capsid	phage major capsid protein	capsid	A0A2H4J8D1	uncultured_Caudovirales_phage	64.9	4.0e-147
WP_029885582.1|5230518_5231160_-|head,protease	HK97 family phage prohead protease	head,protease	A0A2H4JA51	uncultured_Caudovirales_phage	76.4	1.9e-87
WP_029885581.1|5231146_5232361_-|portal	phage portal protein	portal	A0A2H4JFN7	uncultured_Caudovirales_phage	71.4	3.9e-166
WP_029885580.1|5232363_5234049_-|terminase	terminase large subunit	terminase	A0A2H4JDK9	uncultured_Caudovirales_phage	83.4	9.3e-259
WP_029885579.1|5234048_5234594_-|terminase	terminase	terminase	S4TNN3	Salmonella_phage	35.1	3.7e-15
WP_029885578.1|5234749_5235385_-	HNH endonuclease	NA	NA	NA	NA	NA
WP_029885577.1|5235393_5235732_-	HNH endonuclease	NA	B5WZZ4	Pseudomonas_phage	51.9	3.4e-27
WP_029885576.1|5235731_5235950_-	hypothetical protein	NA	NA	NA	NA	NA
WP_017147910.1|5235949_5236231_-|holin	phage holin family protein	holin	A0A2H4J0H1	uncultured_Caudovirales_phage	94.6	1.3e-43
WP_029885575.1|5236231_5236606_-	hypothetical protein	NA	A0A2H4J7X6	uncultured_Caudovirales_phage	96.0	7.3e-63
WP_012313238.1|5236855_5237365_-	acyloxyacyl hydrolase	NA	A0A2H4J0I5	uncultured_Caudovirales_phage	94.7	2.2e-86
WP_024717999.1|5237590_5237980_-	antitermination protein Q	NA	A0A1W6JTD2	Pseudomonas_phage	57.0	7.1e-37
WP_024717998.1|5237976_5238264_-	hypothetical protein	NA	A0A1W6JTC1	Pseudomonas_phage	41.4	5.8e-12
WP_029885940.1|5238260_5238761_-	hypothetical protein	NA	NA	NA	NA	NA
WP_029885939.1|5238747_5240160_-	AAA family ATPase	NA	A0A0A0YUG7	Pseudomonas_phage	72.5	8.0e-187
WP_064590896.1|5240156_5240975_-	ATP-binding protein	NA	A0A2H4J2L2	uncultured_Caudovirales_phage	45.2	1.6e-54
WP_064590898.1|5240961_5241756_-	helix-turn-helix domain-containing protein	NA	A0A1W6JTD5	Pseudomonas_phage	54.2	1.9e-44
WP_064590900.1|5241752_5241983_-	hypothetical protein	NA	NA	NA	NA	NA
WP_064590902.1|5241979_5242630_-	hypothetical protein	NA	NA	NA	NA	NA
WP_064590904.1|5242623_5243397_-	ORF6N domain-containing protein	NA	A0A1B5FPC0	Escherichia_phage	53.6	9.9e-22
WP_029885932.1|5243393_5243684_-	hypothetical protein	NA	NA	NA	NA	NA
WP_033744516.1|5243680_5243950_-	hypothetical protein	NA	NA	NA	NA	NA
WP_029885930.1|5243942_5244278_-	hypothetical protein	NA	NA	NA	NA	NA
WP_064590906.1|5244415_5244718_-	hypothetical protein	NA	A0A2H4JF66	uncultured_Caudovirales_phage	58.9	4.6e-07
WP_029885928.1|5244831_5245572_+	Cro/Cl family transcriptional regulator	NA	A0A0H5BBV1	Pseudomonas_phage	63.8	5.0e-47
WP_029885927.1|5245707_5246106_+	helix-turn-helix transcriptional regulator	NA	A0A1W6JTA9	Pseudomonas_phage	67.2	1.9e-32
WP_029885926.1|5246134_5246407_+	hypothetical protein	NA	NA	NA	NA	NA
WP_029885925.1|5246511_5247027_+	Rha family transcriptional regulator	NA	A0A2D1GLJ3	Escherichia_phage	37.9	1.7e-25
WP_050492198.1|5247126_5247480_+	carbon storage regulator	NA	NA	NA	NA	NA
WP_033744511.1|5247476_5248064_+	hypothetical protein	NA	NA	NA	NA	NA
WP_029885923.1|5248060_5248837_+	hypothetical protein	NA	NA	NA	NA	NA
WP_029885922.1|5248995_5250174_+|integrase	site-specific integrase	integrase	A0A1W6JTA0	Pseudomonas_phage	80.5	9.7e-178
WP_029885921.1|5250157_5250706_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012053756.1|5250976_5252233_+|integrase	tyrosine-type recombinase/integrase	integrase	A0A1V0E8G8	Vibrio_phage	47.1	2.2e-111
WP_012053757.1|5253197_5254595_+	DUF3987 domain-containing protein	NA	NA	NA	NA	NA
WP_012053758.1|5254578_5254938_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012053759.1|5254915_5255896_+|integrase	integrase domain-containing protein	integrase	NA	NA	NA	NA
5260161:5260178	attR	GCCGCGCACCGCCAGTTC	NA	NA	NA	NA
