assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000270225.1_ASM27022v1	NC_015571	Porphyromonas gingivalis TDC60, complete genome	1	6623-6770	1	CRISPRCasFinder	no		DEDDh,cas2,cas1,cmr6gr7,cmr5gr11,cmr4gr7,cmr3gr5,cas10,cmr1gr7,cas4,cas3,cas7b,cas8b4,cas5,cas6,cas13b,Csx28,PD-DExK	Orphan	GAACCAAGGACCCTCTGATTAACAGTCAGATGCTCTAACCAACTGAGCTAAG	52	0	0	NA	NA	NA	1	1	Orphan	DEDDh,cas2,cas1,cmr6gr7,cmr5gr11,cmr4gr7,cmr3gr5,cas10,cmr1gr7,cas4,cas3,cas7b,cas8b4,cas5,cas6,cas13b,Csx28,PD-DExK	NA,NA|749aa|down_7|NC_015571.1_18233_20480_+	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|474aa|up_5|NC_015571.1_0_1422_+	TIGR00362, DnaA, chromosomal replication initiator protein DnaA	NA|191aa|up_4|NC_015571.1_1434_2007_+	cd03358, LbH_WxcM_N_like, WcxM-like, Left-handed parallel beta-Helix (LbH) N-terminal domain: This group is composed of Xanthomonas campestris WcxM and proteins with similarity to the WcxM N-terminal domain	NA|340aa|up_3|NC_015571.1_2008_3028_-	COG3274, COG3274, Predicted O-acyltransferase [General function prediction only]	NA|236aa|up_2|NC_015571.1_3107_3815_+	PRK00481, PRK00481, NAD-dependent deacetylase; Provisional	NA|385aa|up_1|NC_015571.1_3888_5043_-	cd07385, MPP_YkuE_C, Bacillus subtilis YkuE and related proteins, C-terminal metallophosphatase domain	NA|460aa|up_0|NC_015571.1_5095_6475_-	cd13143, MATE_MepA_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Streptococcus aureus MepA	NA|101aa|down_0|NC_015571.1_6959_7262_+	pfam07877, DUF1661, Protein of unknown function (DUF1661)	NA|860aa|down_1|NC_015571.1_7401_9981_+	COG0542, clpA, ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]	NA|1004aa|down_2|NC_015571.1_10120_13132_+	COG1472, BglX, Beta-glucosidase-related glycosidases [Carbohydrate transport and metabolism]	NA|343aa|down_3|NC_015571.1_13179_14208_+	TIGR01140, L_thr_O3P_dcar, L-threonine-O-3-phosphate decarboxylase	NA|257aa|down_4|NC_015571.1_14217_14988_+	pfam04029, 2-ph_phosp, 2-phosphosulpholactate phosphatase	NA|450aa|down_5|NC_015571.1_15532_16882_+	COG2204, AtoC, Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]	NA|446aa|down_6|NC_015571.1_16892_18230_+	COG5000, NtrY, Signal transduction histidine kinase involved in nitrogen fixation and metabolism regulation [Signal transduction mechanisms]	NA|749aa|down_7|NC_015571.1_18233_20480_+	NA	NA|232aa|down_8|NC_015571.1_20564_21260_+	COG1846, MarR, Transcriptional regulators [Transcription]	NA|334aa|down_9|NC_015571.1_21254_22256_-	cd02801, DUS_like_FMN, Dihydrouridine synthase-like (DUS-like) FMN-binding domain
GCF_000270225.1_ASM27022v1	NC_015571	Porphyromonas gingivalis TDC60, complete genome	2	237463-237560	2	CRISPRCasFinder	no		DEDDh,cas2,cas1,cmr6gr7,cmr5gr11,cmr4gr7,cmr3gr5,cas10,cmr1gr7,cas4,cas3,cas7b,cas8b4,cas5,cas6,cas13b,Csx28,PD-DExK	Orphan	CTTCGAATCCGTTTATATAAGGCCTAAAAT	30	1	1	237493-237530	NC_015571.1_587779-587742	NA	1	1	Orphan	DEDDh,cas2,cas1,cmr6gr7,cmr5gr11,cmr4gr7,cmr3gr5,cas10,cmr1gr7,cas4,cas3,cas7b,cas8b4,cas5,cas6,cas13b,Csx28,PD-DExK	NA|58aa|up_0|NC_015571.1_237105_237279_-,NA	NA|474aa|up_9|NC_015571.1_227684_229106_+	pfam12146, Hydrolase_4, Serine aminopeptidase, S33	NA|335aa|up_8|NC_015571.1_229378_230383_-	COG0039, Mdh, Malate/lactate dehydrogenases [Energy production and conversion]	NA|31aa|up_7|NC_015571.1_230514_230607_-	pfam07877, DUF1661, Protein of unknown function (DUF1661)	NA|41aa|up_6|NC_015571.1_230575_230698_+	pfam07877, DUF1661, Protein of unknown function (DUF1661)	NA|387aa|up_5|NC_015571.1_230844_232005_+	COG0628, yhhT, Predicted permease, member of the PurR regulon [General function prediction only]	NA|567aa|up_4|NC_015571.1_232386_234087_+	PRK05347, PRK05347, glutaminyl-tRNA synthetase; Provisional	NA|216aa|up_3|NC_015571.1_234114_234762_+	COG0586, DedA, Uncharacterized membrane-associated protein [Function unknown]	NA|312aa|up_2|NC_015571.1_234822_235758_+	COG1284, COG1284, Uncharacterized conserved protein [Function unknown]	NA|340aa|up_1|NC_015571.1_235761_236781_+	COG0451, WcaG, Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]	NA|58aa|up_0|NC_015571.1_237105_237279_-	NA	NA|432aa|down_0|NC_015571.1_237569_238865_-	COG0427, ACH1, Acetyl-CoA hydrolase [Energy production and conversion]	NA|50aa|down_1|NC_015571.1_239402_239552_-	pfam14128, DUF4295, Domain of unknown function (DUF4295)	NA|63aa|down_2|NC_015571.1_239570_239759_-	CHL00104, rpl33, ribosomal protein L33	NA|80aa|down_3|NC_015571.1_239778_240018_-	PRK00359, rpmB, 50S ribosomal protein L28; Reviewed	NA|756aa|down_4|NC_015571.1_240240_242508_-	pfam01384, PHO4, Phosphate transporter family	NA|208aa|down_5|NC_015571.1_242704_243328_-	TIGR01201, HU_rel, DNA-binding protein, histone-like, putative	NA|192aa|down_6|NC_015571.1_243739_244315_+	pfam01300, Sua5_yciO_yrdC, Telomere recombination	NA|469aa|down_7|NC_015571.1_244311_245718_+	TIGR03025, EPS_sugtrans, exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase	NA|599aa|down_8|NC_015571.1_245714_247511_+	cd00400, Voltage_gated_ClC, CLC voltage-gated chloride channel	NA|355aa|down_9|NC_015571.1_247471_248536_-	PRK10334, PRK10334, small-conductance mechanosensitive channel MscS
GCF_000270225.1_ASM27022v1	NC_015571	Porphyromonas gingivalis TDC60, complete genome	3	251189-251297	3	CRISPRCasFinder	no	cas2,cas1,cmr6gr7,cmr5gr11,cmr4gr7,cmr3gr5,cas10,cmr1gr7	DEDDh,cas2,cas1,cmr6gr7,cmr5gr11,cmr4gr7,cmr3gr5,cas10,cmr1gr7,cas4,cas3,cas7b,cas8b4,cas5,cas6,cas13b,Csx28,PD-DExK	Type III-A,Type III-B,Type III-C,Type III-D	AGGAAGCCGTTGTCACGTGACAATCAC	27	0	0	NA	NA	NA	1	1	TypeIII-B,TypeIII-A,TypeIII-C,TypeIII-D	DEDDh,cas2,cas1,cmr6gr7,cmr5gr11,cmr4gr7,cmr3gr5,cas10,cmr1gr7,cas4,cas3,cas7b,cas8b4,cas5,cas6,cas13b,Csx28,PD-DExK	NA,NA|351aa|down_0|NC_015571.1_251474_252527_+,NA|223aa|down_1|NC_015571.1_252670_253339_-,NA|364aa|down_2|NC_015571.1_253317_254409_-,NA|351aa|down_3|NC_015571.1_254621_255674_+,NA|197aa|down_5|NC_015571.1_258067_258658_-	NA|63aa|up_9|NC_015571.1_239570_239759_-	CHL00104, rpl33, ribosomal protein L33	NA|80aa|up_8|NC_015571.1_239778_240018_-	PRK00359, rpmB, 50S ribosomal protein L28; Reviewed	NA|756aa|up_7|NC_015571.1_240240_242508_-	pfam01384, PHO4, Phosphate transporter family	NA|208aa|up_6|NC_015571.1_242704_243328_-	TIGR01201, HU_rel, DNA-binding protein, histone-like, putative	NA|192aa|up_5|NC_015571.1_243739_244315_+	pfam01300, Sua5_yciO_yrdC, Telomere recombination	NA|469aa|up_4|NC_015571.1_244311_245718_+	TIGR03025, EPS_sugtrans, exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase	NA|599aa|up_3|NC_015571.1_245714_247511_+	cd00400, Voltage_gated_ClC, CLC voltage-gated chloride channel	NA|355aa|up_2|NC_015571.1_247471_248536_-	PRK10334, PRK10334, small-conductance mechanosensitive channel MscS	NA|296aa|up_1|NC_015571.1_248572_249460_+	TIGR02917, TPR_domain_protein, putative PEP-CTERM system TPR-repeat lipoprotein	NA|301aa|up_0|NC_015571.1_249966_250869_-	TIGR04183, hypothetical_protein, Por secretion system C-terminal sorting domain	NA|351aa|down_0|NC_015571.1_251474_252527_+	NA	NA|223aa|down_1|NC_015571.1_252670_253339_-	NA	NA|364aa|down_2|NC_015571.1_253317_254409_-	NA	NA|351aa|down_3|NC_015571.1_254621_255674_+	NA	NA|668aa|down_4|NC_015571.1_256034_258038_-	pfam12836, HHH_3, Helix-hairpin-helix motif	NA|197aa|down_5|NC_015571.1_258067_258658_-	NA	NA|36aa|down_6|NC_015571.1_259241_259349_+	pfam07877, DUF1661, Protein of unknown function (DUF1661)	cas2|97aa|down_7|NC_015571.1_260353_260644_-	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	cas1|1032aa|down_8|NC_015571.1_260663_263759_-	cd09634, Cas1_I-II-III, CRISPR/Cas system-associated protein Cas1	cmr6gr7|258aa|down_9|NC_015571.1_263820_264594_-	cd09661, Cmr6_III-B, CRISPR/Cas system-associated RAMP superfamily protein Cmr6
GCF_000270225.1_ASM27022v1	NC_015571	Porphyromonas gingivalis TDC60, complete genome	4	259611-259953	1,4,1	PILER-CR,CRISPRCasFinder,CRT	no	cas2,cas1,cmr6gr7,cmr5gr11,cmr4gr7,cmr3gr5,cas10,cmr1gr7	DEDDh,cas2,cas1,cmr6gr7,cmr5gr11,cmr4gr7,cmr3gr5,cas10,cmr1gr7,cas4,cas3,cas7b,cas8b4,cas5,cas6,cas13b,Csx28,PD-DExK	Type III-A,Type III-B,Type III-C,Type III-D	GTCTTAATAGCCTTACGGACTGTGTATGTATAGTGAG,GTCTTAATAGCCTTACGGACTGTGTATGTATAGTGAG,GTCTTAATAGCCTTACGGACTGTGTATGTATAGTGAG	37,37,37	1	1	259804-259844	NC_015571.1_63738-63698	NA:NA:NA	4,4,4	4	TypeIII-B,TypeIII-A,TypeIII-C,TypeIII-D	DEDDh,cas2,cas1,cmr6gr7,cmr5gr11,cmr4gr7,cmr3gr5,cas10,cmr1gr7,cas4,cas3,cas7b,cas8b4,cas5,cas6,cas13b,Csx28,PD-DExK	NA|351aa|up_6|NC_015571.1_251474_252527_+,NA|223aa|up_5|NC_015571.1_252670_253339_-,NA|364aa|up_4|NC_015571.1_253317_254409_-,NA|351aa|up_3|NC_015571.1_254621_255674_+,NA|197aa|up_1|NC_015571.1_258067_258658_-,cmr5gr11|146aa|down_3|NC_015571.1_264590_265028_-,cmr1gr7|484aa|down_7|NC_015571.1_268594_270046_-,cmr1gr7|84aa|down_8|NC_015571.1_270052_270304_-,NA|528aa|down_9|NC_015571.1_270305_271889_-	NA|355aa|up_9|NC_015571.1_247471_248536_-	PRK10334, PRK10334, small-conductance mechanosensitive channel MscS	NA|296aa|up_8|NC_015571.1_248572_249460_+	TIGR02917, TPR_domain_protein, putative PEP-CTERM system TPR-repeat lipoprotein	NA|301aa|up_7|NC_015571.1_249966_250869_-	TIGR04183, hypothetical_protein, Por secretion system C-terminal sorting domain	NA|351aa|up_6|NC_015571.1_251474_252527_+	NA	NA|223aa|up_5|NC_015571.1_252670_253339_-	NA	NA|364aa|up_4|NC_015571.1_253317_254409_-	NA	NA|351aa|up_3|NC_015571.1_254621_255674_+	NA	NA|668aa|up_2|NC_015571.1_256034_258038_-	pfam12836, HHH_3, Helix-hairpin-helix motif	NA|197aa|up_1|NC_015571.1_258067_258658_-	NA	NA|36aa|up_0|NC_015571.1_259241_259349_+	pfam07877, DUF1661, Protein of unknown function (DUF1661)	cas2|97aa|down_0|NC_015571.1_260353_260644_-	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	cas1|1032aa|down_1|NC_015571.1_260663_263759_-	cd09634, Cas1_I-II-III, CRISPR/Cas system-associated protein Cas1	cmr6gr7|258aa|down_2|NC_015571.1_263820_264594_-	cd09661, Cmr6_III-B, CRISPR/Cas system-associated RAMP superfamily protein Cmr6	cmr5gr11|146aa|down_3|NC_015571.1_264590_265028_-	NA	cmr4gr7|234aa|down_4|NC_015571.1_265024_265726_-	cd09682, Cmr4_III-B, CRISPR/Cas system-associated RAMP superfamily protein Cmr4	cmr3gr5|404aa|down_5|NC_015571.1_265739_266951_-	TIGR01888, Hypothetical_protein_SSO1730, CRISPR type III-B/RAMP module-associated protein Cmr3	cas10|550aa|down_6|NC_015571.1_266952_268602_-	TIGR02577, thermophile-specific_DNA_repair_system, CRISPR-associated protein Cas10/Cmr2, subtype III-B	cmr1gr7|484aa|down_7|NC_015571.1_268594_270046_-	NA	cmr1gr7|84aa|down_8|NC_015571.1_270052_270304_-	NA	NA|528aa|down_9|NC_015571.1_270305_271889_-	NA
GCF_000270225.1_ASM27022v1	NC_015571	Porphyromonas gingivalis TDC60, complete genome	5	293621-294703	5,2,2	CRISPRCasFinder,CRT,PILER-CR	no	cas2,cas1,cas4,cas3,cas7b,cas8b4,cas5,cas6	DEDDh,cas2,cas1,cmr6gr7,cmr5gr11,cmr4gr7,cmr3gr5,cas10,cmr1gr7,cas4,cas3,cas7b,cas8b4,cas5,cas6,cas13b,Csx28,PD-DExK	Unclear	GTTTTAATTCCTGTATGGTGCAATTGAAAT,GTTTTAATTCCTGTATGGTGCAATTGAAAT,GTTTTAATTCCTGTATGGTGCAATTGAAAT	30,30,30	2	2	293851-293886|293852-293887	NC_015571.1_2170216-2170251|NC_015571.1_2170216-2170251	NA:NA:NA	16,16,16	16	Unclear	DEDDh,cas2,cas1,cmr6gr7,cmr5gr11,cmr4gr7,cmr3gr5,cas10,cmr1gr7,cas4,cas3,cas7b,cas8b4,cas5,cas6,cas13b,Csx28,PD-DExK	NA|120aa|up_4|NC_015571.1_285807_286167_+,NA	NA|209aa|up_9|NC_015571.1_280012_280639_-	TIGR02227, Inactive_signal_peptidase_IA	NA|466aa|up_8|NC_015571.1_280628_282026_-	PRK10861, PRK10861, signal peptidase I	NA|239aa|up_7|NC_015571.1_282041_282758_-	PRK00048, PRK00048, dihydrodipicolinate reductase; Provisional	NA|448aa|up_6|NC_015571.1_282818_284162_-	TIGR01353, dGTP_triPase, deoxyguanosinetriphosphate triphosphohydrolase, putative	NA|331aa|up_5|NC_015571.1_284305_285298_-	COG2855, COG2855, Predicted membrane protein [Function unknown]	NA|120aa|up_4|NC_015571.1_285807_286167_+	NA	NA|834aa|up_3|NC_015571.1_286473_288975_+	cd01347, ligand_gated_channel, TonB dependent/Ligand-Gated channels are created by a monomeric 22 strand (22,24) anti-parallel beta-barrel	NA|246aa|up_2|NC_015571.1_289544_290282_+	pfam02565, RecO_C, Recombination protein O C terminal	NA|583aa|up_1|NC_015571.1_290354_292103_+	cd05799, PGM2, This CD includes PGM2 (phosphoglucomutase 2) and PGM2L1 (phosphoglucomutase 2-like 1)	NA|362aa|up_0|NC_015571.1_292361_293447_-	pfam05598, DUF772, Transposase domain (DUF772)	NA|362aa|down_0|NC_015571.1_294856_295942_-	pfam05598, DUF772, Transposase domain (DUF772)	cas2|88aa|down_1|NC_015571.1_300640_300904_-	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	cas1|339aa|down_2|NC_015571.1_300903_301920_-	TIGR03641, cas1_HMARI, CRISPR-associated endonuclease Cas1, subtype I-B/HMARI/TNEAP	cas4|171aa|down_3|NC_015571.1_301916_302429_-	pfam01930, Cas_Cas4, Domain of unknown function DUF83	cas3|768aa|down_4|NC_015571.1_302448_304752_-	TIGR01587, CRISPR-associated_endonuclease/helicase_Cas3, CRISPR-associated helicase Cas3	cas7b|339aa|down_5|NC_015571.1_304741_305758_-	TIGR03489, cas_csp1, CRISPR-associated protein Cas7/Csp1, subtype PGING	cas8b4|500aa|down_6|NC_015571.1_305768_307268_-	TIGR03487, cas_csp2, CRISPR-associated protein Cas8c/Csp2, subtype PGING	cas5|248aa|down_7|NC_015571.1_307264_308008_-	TIGR03488, cas_Cas5p, CRISPR-associated protein Cas5, subtype PGING	cas6|222aa|down_8|NC_015571.1_308004_308670_-	TIGR01877, CRISPR-associated_endoribonuclease_Cas6_1, CRISPR-associated endoribonuclease Cas6	NA|83aa|down_9|NC_015571.1_308692_308941_-	pfam07877, DUF1661, Protein of unknown function (DUF1661)
GCF_000270225.1_ASM27022v1	NC_015571	Porphyromonas gingivalis TDC60, complete genome	6	296084-300394	3,6,3	PILER-CR,CRISPRCasFinder,CRT	no	cas2,cas1,cas4,cas3,cas7b,cas8b4,cas5,cas6	DEDDh,cas2,cas1,cmr6gr7,cmr5gr11,cmr4gr7,cmr3gr5,cas10,cmr1gr7,cas4,cas3,cas7b,cas8b4,cas5,cas6,cas13b,Csx28,PD-DExK	Unclear	GTTTTAATTCCTGTATGGTGCAATTGAAAT,GTTTTAATTCCTGTATGGTGCAATTGAAAT,GTTTTAATTCCTGTATGGTGCAATTGAAAT	30,30,30	4	4	296114-296149|296180-296215|296246-296281|296312-296347	NC_015571.1_296048-296083|NC_015571.1_296048-296083|NC_015571.1_296048-296083|NC_015571.1_296048-296083	NA:NA:NA	65,65,65	65	Unclear	DEDDh,cas2,cas1,cmr6gr7,cmr5gr11,cmr4gr7,cmr3gr5,cas10,cmr1gr7,cas4,cas3,cas7b,cas8b4,cas5,cas6,cas13b,Csx28,PD-DExK	NA|120aa|up_5|NC_015571.1_285807_286167_+,NA|31aa|down_9|NC_015571.1_308909_309002_+	NA|466aa|up_9|NC_015571.1_280628_282026_-	PRK10861, PRK10861, signal peptidase I	NA|239aa|up_8|NC_015571.1_282041_282758_-	PRK00048, PRK00048, dihydrodipicolinate reductase; Provisional	NA|448aa|up_7|NC_015571.1_282818_284162_-	TIGR01353, dGTP_triPase, deoxyguanosinetriphosphate triphosphohydrolase, putative	NA|331aa|up_6|NC_015571.1_284305_285298_-	COG2855, COG2855, Predicted membrane protein [Function unknown]	NA|120aa|up_5|NC_015571.1_285807_286167_+	NA	NA|834aa|up_4|NC_015571.1_286473_288975_+	cd01347, ligand_gated_channel, TonB dependent/Ligand-Gated channels are created by a monomeric 22 strand (22,24) anti-parallel beta-barrel	NA|246aa|up_3|NC_015571.1_289544_290282_+	pfam02565, RecO_C, Recombination protein O C terminal	NA|583aa|up_2|NC_015571.1_290354_292103_+	cd05799, PGM2, This CD includes PGM2 (phosphoglucomutase 2) and PGM2L1 (phosphoglucomutase 2-like 1)	NA|362aa|up_1|NC_015571.1_292361_293447_-	pfam05598, DUF772, Transposase domain (DUF772)	NA|362aa|up_0|NC_015571.1_294856_295942_-	pfam05598, DUF772, Transposase domain (DUF772)	cas2|88aa|down_0|NC_015571.1_300640_300904_-	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	cas1|339aa|down_1|NC_015571.1_300903_301920_-	TIGR03641, cas1_HMARI, CRISPR-associated endonuclease Cas1, subtype I-B/HMARI/TNEAP	cas4|171aa|down_2|NC_015571.1_301916_302429_-	pfam01930, Cas_Cas4, Domain of unknown function DUF83	cas3|768aa|down_3|NC_015571.1_302448_304752_-	TIGR01587, CRISPR-associated_endonuclease/helicase_Cas3, CRISPR-associated helicase Cas3	cas7b|339aa|down_4|NC_015571.1_304741_305758_-	TIGR03489, cas_csp1, CRISPR-associated protein Cas7/Csp1, subtype PGING	cas8b4|500aa|down_5|NC_015571.1_305768_307268_-	TIGR03487, cas_csp2, CRISPR-associated protein Cas8c/Csp2, subtype PGING	cas5|248aa|down_6|NC_015571.1_307264_308008_-	TIGR03488, cas_Cas5p, CRISPR-associated protein Cas5, subtype PGING	cas6|222aa|down_7|NC_015571.1_308004_308670_-	TIGR01877, CRISPR-associated_endoribonuclease_Cas6_1, CRISPR-associated endoribonuclease Cas6	NA|83aa|down_8|NC_015571.1_308692_308941_-	pfam07877, DUF1661, Protein of unknown function (DUF1661)	NA|31aa|down_9|NC_015571.1_308909_309002_+	NA
GCF_000270225.1_ASM27022v1	NC_015571	Porphyromonas gingivalis TDC60, complete genome	7	604390-605408	4,7,4	PILER-CR,CRISPRCasFinder,CRT	no		DEDDh,cas2,cas1,cmr6gr7,cmr5gr11,cmr4gr7,cmr3gr5,cas10,cmr1gr7,cas4,cas3,cas7b,cas8b4,cas5,cas6,cas13b,Csx28,PD-DExK	Orphan	GTTTTAATTCCTGTATGGTGCAATTGAAAT,ATTTCAATTGCACCATACAGGAATTAAAAC,ATTTCAATTGCACCATACAGGAATTAAAAC	30,30,30	2	2	605216-605251|605209-605244	NC_015571.1_2170251-2170216|NC_015571.1_2170251-2170216	NA:NA:NA	14,15,15	15	Orphan	DEDDh,cas2,cas1,cmr6gr7,cmr5gr11,cmr4gr7,cmr3gr5,cas10,cmr1gr7,cas4,cas3,cas7b,cas8b4,cas5,cas6,cas13b,Csx28,PD-DExK	NA,NA|31aa|down_5|NC_015571.1_613075_613168_-,NA|73aa|down_8|NC_015571.1_617166_617385_-	NA|309aa|up_9|NC_015571.1_594723_595650_-	TIGR02225, Tyrosine_recombinase_XerD, tyrosine recombinase XerD	NA|142aa|up_8|NC_015571.1_595766_596192_+	pfam01220, DHquinase_II, Dehydroquinase class II	NA|211aa|up_7|NC_015571.1_596310_596943_+	COG4122, COG4122, Predicted O-methyltransferase [General function prediction only]	NA|168aa|up_6|NC_015571.1_597024_597528_+	PRK00522, tpx, thiol peroxidase	NA|164aa|up_5|NC_015571.1_597723_598215_-	COG0590, CumB, Cytosine/adenosine deaminases [Nucleotide transport and metabolism / Translation, ribosomal structure and biogenesis]	NA|288aa|up_4|NC_015571.1_598247_599111_-	COG2996, COG2996, Predicted RNA-bindining protein (contains S1 and HTH domains) [General function prediction only]	NA|473aa|up_3|NC_015571.1_599120_600539_-	pfam13590, DUF4136, Domain of unknown function (DUF4136)	NA|161aa|up_2|NC_015571.1_600572_601055_-	pfam02464, CinA, Competence-damaged protein	NA|342aa|up_1|NC_015571.1_601054_602080_-	PRK09604, PRK09604, tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	NA|85aa|up_0|NC_015571.1_602497_602752_-	PRK00239, rpsT, 30S ribosomal protein S20; Reviewed	NA|362aa|down_0|NC_015571.1_605647_606733_+	pfam05598, DUF772, Transposase domain (DUF772)	NA|83aa|down_1|NC_015571.1_606832_607081_+	pfam07877, DUF1661, Protein of unknown function (DUF1661)	NA|732aa|down_2|NC_015571.1_607271_609467_-	TIGR02063, Ribonuclease_R, ribonuclease R	NA|504aa|down_3|NC_015571.1_609520_611032_-	pfam03321, GH3, GH3 auxin-responsive promoter	NA|617aa|down_4|NC_015571.1_611065_612916_-	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]	NA|31aa|down_5|NC_015571.1_613075_613168_-	NA	NA|37aa|down_6|NC_015571.1_613136_613247_+	pfam07877, DUF1661, Protein of unknown function (DUF1661)	NA|917aa|down_7|NC_015571.1_613571_616322_+	pfam14905, OMP_b-brl_3, Outer membrane protein beta-barrel family	NA|73aa|down_8|NC_015571.1_617166_617385_-	NA	NA|215aa|down_9|NC_015571.1_617417_618062_+	TIGR00558, Pyridoxine/pyridoxamine_5'-phosphate_oxidase, pyridoxamine-phosphate oxidase
GCF_000270225.1_ASM27022v1	NC_015571	Porphyromonas gingivalis TDC60, complete genome	8	679139-679231	8	CRISPRCasFinder	no		DEDDh,cas2,cas1,cmr6gr7,cmr5gr11,cmr4gr7,cmr3gr5,cas10,cmr1gr7,cas4,cas3,cas7b,cas8b4,cas5,cas6,cas13b,Csx28,PD-DExK	Orphan	CTCTACCCTTTATAGTATAACCCC	24	0	0	NA	NA	NA	1	1	Orphan	DEDDh,cas2,cas1,cmr6gr7,cmr5gr11,cmr4gr7,cmr3gr5,cas10,cmr1gr7,cas4,cas3,cas7b,cas8b4,cas5,cas6,cas13b,Csx28,PD-DExK	NA|136aa|up_6|NC_015571.1_670041_670449_-,NA|131aa|up_4|NC_015571.1_671452_671845_+,NA|85aa|up_3|NC_015571.1_672042_672297_-,NA|149aa|down_1|NC_015571.1_679947_680394_+,NA|140aa|down_2|NC_015571.1_680434_680854_+,NA|594aa|down_5|NC_015571.1_682975_684757_-	NA|421aa|up_9|NC_015571.1_666779_668042_-	COG0577, SalY, ABC-type antimicrobial peptide transport system, permease component [Defense mechanisms]	NA|425aa|up_8|NC_015571.1_668064_669339_-	COG0577, SalY, ABC-type antimicrobial peptide transport system, permease component [Defense mechanisms]	NA|220aa|up_7|NC_015571.1_669363_670023_-	cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein	NA|136aa|up_6|NC_015571.1_670041_670449_-	NA	NA|175aa|up_5|NC_015571.1_670931_671456_+	TIGR02937, RNA_polymerase_sigma_factor, RNA polymerase sigma factor, sigma-70 family	NA|131aa|up_4|NC_015571.1_671452_671845_+	NA	NA|85aa|up_3|NC_015571.1_672042_672297_-	NA	NA|716aa|up_2|NC_015571.1_672699_674847_-	PRK09426, PRK09426, methylmalonyl-CoA mutase; Reviewed	NA|619aa|up_1|NC_015571.1_674875_676732_-	TIGR00642, mmCoA_mut_beta, methylmalonyl-CoA mutase, heterodimeric type, beta chain	NA|509aa|up_0|NC_015571.1_676973_678500_+	TIGR04183, hypothetical_protein, Por secretion system C-terminal sorting domain	NA|156aa|down_0|NC_015571.1_679418_679886_+	TIGR01201, HU_rel, DNA-binding protein, histone-like, putative	NA|149aa|down_1|NC_015571.1_679947_680394_+	NA	NA|140aa|down_2|NC_015571.1_680434_680854_+	NA	NA|224aa|down_3|NC_015571.1_681024_681696_-	cd14840, D-Ala-D-Ala_dipeptidase_Aad, D-Ala-D-Ala dipeptidase (includes Lactobacillus plantarum Aad peptidase)	NA|408aa|down_4|NC_015571.1_681727_682951_-	cd07516, HAD_Pase, phosphatase, similar to Escherichia coli Cof and Thermotoga maritima TM0651; belongs to the haloacid dehalogenase-like superfamily	NA|594aa|down_5|NC_015571.1_682975_684757_-	NA	NA|996aa|down_6|NC_015571.1_684792_687780_-	TIGR02917, TPR_domain_protein, putative PEP-CTERM system TPR-repeat lipoprotein	NA|747aa|down_7|NC_015571.1_688037_690278_-	COG0317, SpoT, Guanosine polyphosphate pyrophosphohydrolases/synthetases [Signal transduction mechanisms / Transcription]	NA|474aa|down_8|NC_015571.1_690345_691767_-	PRK01642, cls, cardiolipin synthetase; Reviewed	NA|59aa|down_9|NC_015571.1_691999_692176_+	pfam07877, DUF1661, Protein of unknown function (DUF1661)
GCF_000270225.1_ASM27022v1	NC_015571	Porphyromonas gingivalis TDC60, complete genome	9	786761-786869	9	CRISPRCasFinder	no		DEDDh,cas2,cas1,cmr6gr7,cmr5gr11,cmr4gr7,cmr3gr5,cas10,cmr1gr7,cas4,cas3,cas7b,cas8b4,cas5,cas6,cas13b,Csx28,PD-DExK	Orphan	GCCATTGCTTTCATGGCAGCGATTTGAGCCGAGTCGGGGC	40	0	0	NA	NA	NA	1	1	Orphan	DEDDh,cas2,cas1,cmr6gr7,cmr5gr11,cmr4gr7,cmr3gr5,cas10,cmr1gr7,cas4,cas3,cas7b,cas8b4,cas5,cas6,cas13b,Csx28,PD-DExK	NA|229aa|up_0|NC_015571.1_784237_784924_-,NA	NA|413aa|up_9|NC_015571.1_774415_775654_+	COG1519, KdtA, 3-deoxy-D-manno-octulosonic-acid transferase [Cell envelope biogenesis, outer membrane]	NA|652aa|up_8|NC_015571.1_775738_777694_+	cd16015, LTA_synthase, Lipoteichoic acid synthase like	NA|290aa|up_7|NC_015571.1_777808_778678_+	TIGR01207, Glucose-1-phosphate_thymidylyltransferase_1, glucose-1-phosphate thymidylyltransferase, short form	NA|197aa|up_6|NC_015571.1_778692_779283_+	pfam00908, dTDP_sugar_isom, dTDP-4-dehydrorhamnose 3,5-epimerase	NA|286aa|up_5|NC_015571.1_779279_780137_+	pfam04321, RmlD_sub_bind, RmlD substrate binding domain	NA|355aa|up_4|NC_015571.1_780143_781208_+	cd05246, dTDP_GD_SDR_e, dTDP-D-glucose 4,6-dehydratase, extended (e) SDRs	NA|363aa|up_3|NC_015571.1_781282_782371_+	PRK00389, gcvT, glycine cleavage system aminomethyltransferase GcvT	NA|109aa|up_2|NC_015571.1_783271_783598_-	pfam09919, DUF2149, Uncharacterized conserved protein (DUF2149)	NA|193aa|up_1|NC_015571.1_783603_784182_-	COG0811, TolQ, Biopolymer transport proteins [Intracellular trafficking and secretion]	NA|229aa|up_0|NC_015571.1_784237_784924_-	NA	NA|647aa|down_0|NC_015571.1_789366_791307_-	cd01347, ligand_gated_channel, TonB dependent/Ligand-Gated channels are created by a monomeric 22 strand (22,24) anti-parallel beta-barrel	NA|217aa|down_1|NC_015571.1_791321_791972_-	pfam14064, HmuY, HmuY protein	NA|841aa|down_2|NC_015571.1_792821_795344_-	pfam01640, Peptidase_C10, Peptidase C10 family	NA|49aa|down_3|NC_015571.1_795730_795877_-	pfam07877, DUF1661, Protein of unknown function (DUF1661)	NA|192aa|down_4|NC_015571.1_796111_796687_-	COG0605, SodA, Superoxide dismutase [Inorganic ion transport and metabolism]	NA|257aa|down_5|NC_015571.1_796825_797596_-	PRK02101, PRK02101, peroxide stress protein YaaA	NA|140aa|down_6|NC_015571.1_797680_798100_-	cd00586, 4HBT, 4-hydroxybenzoyl-CoA thioesterase (4HBT)	NA|415aa|down_7|NC_015571.1_798155_799400_-	COG0826, COG0826, Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]	NA|148aa|down_8|NC_015571.1_799412_799856_-	pfam01288, HPPK, 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK)	NA|351aa|down_9|NC_015571.1_799858_800911_-	PRK00147, queA, S-adenosylmethionine:tRNA ribosyltransferase-isomerase; Provisional
GCF_000270225.1_ASM27022v1	NC_015571	Porphyromonas gingivalis TDC60, complete genome	10	1515077-1515311	10,5,5	CRISPRCasFinder,CRT,PILER-CR	no	cas13b,Csx28	DEDDh,cas2,cas1,cmr6gr7,cmr5gr11,cmr4gr7,cmr3gr5,cas10,cmr1gr7,cas4,cas3,cas7b,cas8b4,cas5,cas6,cas13b,Csx28,PD-DExK	Type VI-B2,Type VI-B1	GTTGGATCTACCCTCTATTCGAAGGGTACACACAAC,GTTGGATCTACCCTCTATTCGAAGGGTACACACAAC,GTTGGATCTACCCTCTATTCGAAGGGTACACACAACA	36,36,37	1	1	1515113-1515142	NC_015571.1_2220382-2220411	VI-B2:VI-B2:VI-B2	3,3,2	3	TypeVI-B2,TypeVI-B1	DEDDh,cas2,cas1,cmr6gr7,cmr5gr11,cmr4gr7,cmr3gr5,cas10,cmr1gr7,cas4,cas3,cas7b,cas8b4,cas5,cas6,cas13b,Csx28,PD-DExK	NA|332aa|up_8|NC_015571.1_1502824_1503820_-,NA|190aa|up_2|NC_015571.1_1510100_1510670_-,Csx28|182aa|up_0|NC_015571.1_1514321_1514867_+,NA|198aa|down_2|NC_015571.1_1518962_1519556_-,NA|62aa|down_9|NC_015571.1_1527833_1528019_-	NA|301aa|up_9|NC_015571.1_1501881_1502784_-	COG3643, COG3643, Glutamate formiminotransferase [Amino acid transport and metabolism]	NA|332aa|up_8|NC_015571.1_1502824_1503820_-	NA	NA|173aa|up_7|NC_015571.1_1503852_1504371_-	TIGR01201, HU_rel, DNA-binding protein, histone-like, putative	NA|659aa|up_6|NC_015571.1_1505046_1507023_+	PRK09376, rho, transcription termination factor Rho; Provisional	NA|303aa|up_5|NC_015571.1_1507250_1508159_+	TIGR00950, Uncharacterized_inner_membrane_transporter_YicL, Carboxylate/Amino Acid/Amine Transporter	NA|320aa|up_4|NC_015571.1_1508169_1509129_-	cd04187, DPM1_like_bac, Bacterial DPM1_like enzymes are related to eukaryotic DPM1	NA|301aa|up_3|NC_015571.1_1509181_1510084_-	PRK00091, miaA, tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed	NA|190aa|up_2|NC_015571.1_1510100_1510670_-	NA	cas13b|1120aa|up_1|NC_015571.1_1510957_1514317_+	cd20477, Cas13b_Pb-like, Class 2 type VI-B CRISPR-associated RNA-guided ribonuclease Cas13b from Prevotella buccae and similar Cas13b proteins	Csx28|182aa|up_0|NC_015571.1_1514321_1514867_+	NA	NA|400aa|down_0|NC_015571.1_1516128_1517328_-	PRK06234, PRK06234, methionine gamma-lyase; Provisional	NA|490aa|down_1|NC_015571.1_1517490_1518960_-	cd00839, MPP_PAPs, purple acid phosphatases of the metallophosphatase superfamily, metallophosphatase domain	NA|198aa|down_2|NC_015571.1_1518962_1519556_-	NA	NA|202aa|down_3|NC_015571.1_1519656_1520262_+	PRK00454, engB, GTP-binding protein YsxC; Reviewed	NA|343aa|down_4|NC_015571.1_1520271_1521300_+	cd05247, UDP_G4E_1_SDR_e, UDP-glucose 4 epimerase, subgroup 1, extended (e) SDRs	NA|699aa|down_5|NC_015571.1_1521342_1523439_+	PRK10917, PRK10917, ATP-dependent DNA helicase RecG; Provisional	NA|257aa|down_6|NC_015571.1_1523438_1524209_+	COG0637, COG0637, Predicted phosphatase/phosphohexomutase [General function prediction only]	NA|486aa|down_7|NC_015571.1_1524303_1525761_-	NF033187, internalin_J, class 1 internalin InlJ	NA|481aa|down_8|NC_015571.1_1526325_1527768_+	cd15482, Sialidase_non-viral, Non-viral sialidases	NA|62aa|down_9|NC_015571.1_1527833_1528019_-	NA
GCF_000270225.1_ASM27022v1	NC_015571	Porphyromonas gingivalis TDC60, complete genome	11	1871966-1872073	11	CRISPRCasFinder	no		DEDDh,cas2,cas1,cmr6gr7,cmr5gr11,cmr4gr7,cmr3gr5,cas10,cmr1gr7,cas4,cas3,cas7b,cas8b4,cas5,cas6,cas13b,Csx28,PD-DExK	Orphan	GAAGCGATTTCGGCGAAAAAATTCCT	26	0	0	NA	NA	NA	1	1	Orphan	DEDDh,cas2,cas1,cmr6gr7,cmr5gr11,cmr4gr7,cmr3gr5,cas10,cmr1gr7,cas4,cas3,cas7b,cas8b4,cas5,cas6,cas13b,Csx28,PD-DExK	NA,NA	NA|357aa|up_9|NC_015571.1_1861434_1862505_+	pfam01032, FecCD, FecCD transport family	NA|253aa|up_8|NC_015571.1_1862548_1863307_+	COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]	NA|198aa|up_7|NC_015571.1_1863700_1864294_-	PRK06853, PRK06853, indolepyruvate oxidoreductase subunit beta; Reviewed	NA|536aa|up_6|NC_015571.1_1864320_1865928_-	TIGR03336, IOR_alpha, indolepyruvate ferredoxin oxidoreductase, alpha subunit	NA|254aa|up_5|NC_015571.1_1866005_1866767_-	cd05346, SDR_c5, classical (c) SDR, subgroup 5	NA|55aa|up_4|NC_015571.1_1866867_1867032_-	pfam07877, DUF1661, Protein of unknown function (DUF1661)	NA|398aa|up_3|NC_015571.1_1867194_1868388_+	COG1748, LYS9, Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]	NA|171aa|up_2|NC_015571.1_1868424_1868937_+	cd01011, nicotinamidase, Nicotinamidase/pyrazinamidase (PZase)	NA|445aa|up_1|NC_015571.1_1869139_1870474_+	COG1538, TolC, Outer membrane protein [Cell envelope biogenesis, outer membrane / Intracellular trafficking and secretion]	NA|418aa|up_0|NC_015571.1_1870513_1871767_+	TIGR01730, COG0845:_Membrane-fusion_protein, RND family efflux transporter, MFP subunit	NA|784aa|down_0|NC_015571.1_1872416_1874768_+	TIGR03434, ADOP, Acidobacterial duplicated orphan permease	NA|790aa|down_1|NC_015571.1_1874800_1877170_+	TIGR03434, ADOP, Acidobacterial duplicated orphan permease	NA|792aa|down_2|NC_015571.1_1877196_1879572_+	TIGR03434, ADOP, Acidobacterial duplicated orphan permease	NA|220aa|down_3|NC_015571.1_1879664_1880324_+	cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein	NA|518aa|down_4|NC_015571.1_1880606_1882160_-	COG2461, COG2461, Uncharacterized conserved protein [Function unknown]	NA|53aa|down_5|NC_015571.1_1882279_1882438_-	pfam07877, DUF1661, Protein of unknown function (DUF1661)	NA|452aa|down_6|NC_015571.1_1882643_1883999_-	cd07122, ALDH_F20_ACDH, Coenzyme A acylating aldehyde dehydrogenase (ACDH), ALDH family 20-like	NA|372aa|down_7|NC_015571.1_1884194_1885310_-	cd14860, 4HBD_NAD, 4-hydroxybutyrate dehydrogenase, also called gamma-hydroxybutyrate dehydrogenase, catalyzes the reduction of succinic simialdehyde to 4-hydroxybutyrate in the succinic degradation pathway	NA|432aa|down_8|NC_015571.1_1885360_1886656_-	COG0427, ACH1, Acetyl-CoA hydrolase [Energy production and conversion]	NA|95aa|down_9|NC_015571.1_1886661_1886946_-	pfam01106, NifU, NifU-like domain
