assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000265465.1_ASM26546v1	NC_018016	Ornithobacterium rhinotracheale DSM 15997, complete sequence	1	1079085-1079199	1	CRISPRCasFinder	no		cas3,RT,DEDDh,WYL,cas2,cas1,cas9	Orphan	AAGCAGGTCCAAAAGAAAACAACGGATG	28	0	0	NA	NA	NA	1	1	Orphan	cas3,RT,DEDDh,WYL,cas2,cas1,cas9	NA|118aa|up_8|NC_018016.1_1071860_1072214_-,NA|144aa|up_7|NC_018016.1_1072403_1072835_-,NA|312aa|up_3|NC_018016.1_1074820_1075756_-,NA|73aa|up_2|NC_018016.1_1075787_1076006_+,NA	NA|521aa|up_9|NC_018016.1_1070240_1071803_+	pfam10150, RNase_E_G, Ribonuclease E/G family	NA|118aa|up_8|NC_018016.1_1071860_1072214_-	NA	NA|144aa|up_7|NC_018016.1_1072403_1072835_-	NA	NA|229aa|up_6|NC_018016.1_1072896_1073583_-	COG1040, ComFC, Predicted amidophosphoribosyltransferases [General function prediction only]	NA|152aa|up_5|NC_018016.1_1073627_1074083_+	pfam01242, PTPS, 6-pyruvoyl tetrahydropterin synthase	NA|260aa|up_4|NC_018016.1_1074061_1074841_+	cd07398, MPP_YbbF-LpxH, Escherichia coli YbbF/LpxH and related proteins, metallophosphatase domain	NA|312aa|up_3|NC_018016.1_1074820_1075756_-	NA	NA|73aa|up_2|NC_018016.1_1075787_1076006_+	NA	NA|542aa|up_1|NC_018016.1_1076114_1077740_-	PRK15064, PRK15064, ABC transporter ATP-binding protein; Provisional	NA|151aa|up_0|NC_018016.1_1077806_1078259_+	pfam01668, SmpB, SmpB protein	NA|591aa|down_0|NC_018016.1_1079816_1081589_+	cd01085, APP, X-Prolyl Aminopeptidase 2	NA|396aa|down_1|NC_018016.1_1081693_1082881_-	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|202aa|down_2|NC_018016.1_1082957_1083563_-	COG0605, SodA, Superoxide dismutase [Inorganic ion transport and metabolism]	NA|324aa|down_3|NC_018016.1_1083748_1084720_-	COG1187, RsuA, 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases [Translation, ribosomal structure and biogenesis]	NA|303aa|down_4|NC_018016.1_1084722_1085631_-	cd13961, PT_UbiA_DGGGPS, Geranylgeranylglycerol-phosphate geranylgeranyltransferase	NA|304aa|down_5|NC_018016.1_1085643_1086555_-	COG1577, ERG12, Mevalonate kinase [Lipid metabolism]	NA|286aa|down_6|NC_018016.1_1086621_1087479_-	PRK08507, PRK08507, prephenate dehydrogenase; Validated	NA|125aa|down_7|NC_018016.1_1087475_1087850_-	pfam14129, DUF4296, Domain of unknown function (DUF4296)	NA|241aa|down_8|NC_018016.1_1087849_1088572_-	cd06442, DPM1_like, DPM1_like represents putative enzymes similar to eukaryotic DPM1	NA|214aa|down_9|NC_018016.1_1088635_1089277_+	pfam14093, DUF4271, Domain of unknown function (DUF4271)
GCF_000265465.1_ASM26546v1	NC_018016	Ornithobacterium rhinotracheale DSM 15997, complete sequence	2	1241238-1241317	2	CRISPRCasFinder	no		cas3,RT,DEDDh,WYL,cas2,cas1,cas9	Orphan	TAAACACCCCAATTATAAACCGAAAAA	27	0	0	NA	NA	NA	1	1	Orphan	cas3,RT,DEDDh,WYL,cas2,cas1,cas9	NA|675aa|up_8|NC_018016.1_1235151_1237176_-,NA|109aa|up_7|NC_018016.1_1237259_1237586_-,NA|122aa|up_6|NC_018016.1_1237734_1238100_+,NA|150aa|up_5|NC_018016.1_1238370_1238820_+,NA|70aa|up_3|NC_018016.1_1239427_1239637_+,NA|60aa|up_1|NC_018016.1_1240292_1240472_-,NA|70aa|down_4|NC_018016.1_1249221_1249431_+,NA|80aa|down_7|NC_018016.1_1251838_1252078_-,NA|65aa|down_8|NC_018016.1_1252350_1252545_+	NA|294aa|up_9|NC_018016.1_1234258_1235140_-	pfam13401, AAA_22, AAA domain	NA|675aa|up_8|NC_018016.1_1235151_1237176_-	NA	NA|109aa|up_7|NC_018016.1_1237259_1237586_-	NA	NA|122aa|up_6|NC_018016.1_1237734_1238100_+	NA	NA|150aa|up_5|NC_018016.1_1238370_1238820_+	NA	NA|194aa|up_4|NC_018016.1_1238830_1239412_-	pfam08346, AntA, AntA/AntB antirepressor	NA|70aa|up_3|NC_018016.1_1239427_1239637_+	NA	NA|181aa|up_2|NC_018016.1_1239746_1240289_-	pfam09669, Phage_pRha, Phage regulatory protein Rha (Phage_pRha)	NA|60aa|up_1|NC_018016.1_1240292_1240472_-	NA	NA|170aa|up_0|NC_018016.1_1240568_1241078_+	pfam07022, Phage_CI_repr, Bacteriophage CI repressor helix-turn-helix domain	NA|353aa|down_0|NC_018016.1_1241748_1242807_+	COG1538, TolC, Outer membrane protein [Cell envelope biogenesis, outer membrane / Intracellular trafficking and secretion]	NA|367aa|down_1|NC_018016.1_1242819_1243920_+	TIGR01730, COG0845:_Membrane-fusion_protein, RND family efflux transporter, MFP subunit	NA|1053aa|down_2|NC_018016.1_1243927_1247086_+	COG0841, AcrB, Cation/multidrug efflux pump [Defense mechanisms]	NA|634aa|down_3|NC_018016.1_1247313_1249215_+	TIGR04183, hypothetical_protein, Por secretion system C-terminal sorting domain	NA|70aa|down_4|NC_018016.1_1249221_1249431_+	NA	NA|616aa|down_5|NC_018016.1_1249538_1251386_-	PRK05559, PRK05559, DNA topoisomerase IV subunit B; Reviewed	NA|95aa|down_6|NC_018016.1_1251573_1251858_-	pfam05016, ParE_toxin, ParE toxin of type II toxin-antitoxin system, parDE	NA|80aa|down_7|NC_018016.1_1251838_1252078_-	NA	NA|65aa|down_8|NC_018016.1_1252350_1252545_+	NA	NA|159aa|down_9|NC_018016.1_1252626_1253103_+	TIGR02937, RNA_polymerase_sigma_factor, RNA polymerase sigma factor, sigma-70 family
GCF_000265465.1_ASM26546v1	NC_018016	Ornithobacterium rhinotracheale DSM 15997, complete sequence	3	2221618-2222892	1,3	PILER-CR,CRISPRCasFinder	no	cas2,cas1,cas9	cas3,RT,DEDDh,WYL,cas2,cas1,cas9	 Type II-B, or Type II-C?,Type II-C,Type II-A,Type II-B	GTTGTGATTTGCTTTCAAGTTCTTATTTTTGTGTGAGTAATCACAAG,GTTGTGATTTGCTTTCAAGTTCTTATTTTTGTGTGAGTAATCACAAG	47,47	0	0	NA	NA	NA:NA	16,16	16	TypeII-B,orTypeII-C?,TypeII-C,TypeII-A,TypeII-B	cas3,RT,DEDDh,WYL,cas2,cas1,cas9	NA,NA|82aa|down_8|NC_018016.1_2232667_2232913_+,NA|388aa|down_9|NC_018016.1_2232971_2234135_+	NA|409aa|up_9|NC_018016.1_2211546_2212773_-	COG0577, SalY, ABC-type antimicrobial peptide transport system, permease component [Defense mechanisms]	NA|230aa|up_8|NC_018016.1_2212772_2213462_-	COG1136, SalX, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]	NA|450aa|up_7|NC_018016.1_2213493_2214843_-	cd07100, ALDH_SSADH1_GabD1, Mycobacterium tuberculosis succinate-semialdehyde dehydrogenase 1-like	NA|149aa|up_6|NC_018016.1_2214858_2215305_-	cd14797, DUF302, Uncharacterized domain family DUF302	NA|676aa|up_5|NC_018016.1_2215309_2217337_-	TIGR04131, conserved_hypothetical_protein, gliding motility-associated C-terminal domain	NA|264aa|up_4|NC_018016.1_2217453_2218245_+	cd14847, DD-carboxypeptidase_like, Uncharacterized proteins of the MEROPS peptidase family M15, subfamily B	NA|259aa|up_3|NC_018016.1_2218267_2219044_-	pfam00877, NLPC_P60, NlpC/P60 family	NA|218aa|up_2|NC_018016.1_2219040_2219694_-	COG4122, COG4122, Predicted O-methyltransferase [General function prediction only]	NA|220aa|up_1|NC_018016.1_2219918_2220578_+	PRK00129, upp, uracil phosphoribosyltransferase; Reviewed	NA|295aa|up_0|NC_018016.1_2220600_2221485_-	pfam13612, DDE_Tnp_1_3, Transposase DDE domain	cas2|115aa|down_0|NC_018016.1_2223000_2223345_-	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms]	cas1|299aa|down_1|NC_018016.1_2223349_2224246_-	TIGR03639, cas1_NMENI, CRISPR-associated endonuclease Cas1, subtype II/NMENI	cas9|1536aa|down_2|NC_018016.1_2224245_2228853_-	pfam18541, RuvC_III, RuvC endonuclease subdomain 3	NA|490aa|down_3|NC_018016.1_2229047_2230517_-	cd13128, MATE_Wzx_like, Wzx, a subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins	NA|114aa|down_4|NC_018016.1_2230723_2231065_+	PRK00453, rpsF, 30S ribosomal protein S6; Reviewed	NA|101aa|down_5|NC_018016.1_2231076_2231379_+	PRK00391, rpsR, 30S ribosomal protein S18; Reviewed	NA|149aa|down_6|NC_018016.1_2231398_2231845_+	PRK00137, rplI, 50S ribosomal protein L9; Reviewed	NA|202aa|down_7|NC_018016.1_2231929_2232535_-	pfam01713, Smr, Smr domain	NA|82aa|down_8|NC_018016.1_2232667_2232913_+	NA	NA|388aa|down_9|NC_018016.1_2232971_2234135_+	NA
