assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000262675.1_ASM26267v1	NC_017927	Streptococcus thermophilus MN-ZLW-002, complete sequence	1	630165-632177	1,1,1,2	CRISPRCasFinder,CRT,PILER-CR,PILER-CR	no	cas9,cas1,cas2,csn2	cas3,DEDDh,cas9,cas1,cas2,csn2,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6,DinG	Type II-B,Type II-C,Type II-A	GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC,GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC,GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC,GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC	36,36,36,36	0	0	NA	NA	NA:NA:NA:NA	30,30,28,28	30	TypeII-B,TypeII-C,TypeII-A	cas3,DEDDh,cas9,cas1,cas2,csn2,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6,DinG	NA|86aa|up_5|NC_017927.1_622979_623237_-,NA	NA|454aa|up_9|NC_017927.1_619564_620926_+	COG2265, TrmA, SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]	NA|277aa|up_8|NC_017927.1_621135_621966_+	cd10447, GIY-YIG_unchar_2, GIY-YIG domain of uncharacterized hypothetical protein found in bacteria and archaea	NA|74aa|up_7|NC_017927.1_622133_622355_+	COG3655, COG3655, Predicted transcriptional regulator [Transcription]	NA|153aa|up_6|NC_017927.1_622354_622813_+	COG3392, COG3392, Adenine-specific DNA methylase [DNA replication, recombination, and repair]	NA|86aa|up_5|NC_017927.1_622979_623237_-	NA	NA|205aa|up_4|NC_017927.1_623406_624021_+	pfam09911, DUF2140, Uncharacterized protein conserved in bacteria (DUF2140)	cas9|1122aa|up_3|NC_017927.1_624273_627639_+	cd09643, Csn1, CRISPR/Cas system-associated protein Cas9	cas1|304aa|up_2|NC_017927.1_627815_628727_+	cd09720, Cas1_II, CRISPR/Cas system-associated protein Cas1	cas2|108aa|up_1|NC_017927.1_628728_629052_+	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms]	csn2|351aa|up_0|NC_017927.1_629048_630101_+	pfam16813, Cas_St_Csn2, CRISPR-associated protein Csn2 subfamily St	NA|272aa|down_0|NC_017927.1_632218_633034_-	COG3689, COG3689, Predicted membrane protein [Function unknown]	NA|301aa|down_1|NC_017927.1_633033_633936_-	COG0701, COG0701, Predicted permeases [General function prediction only]	NA|711aa|down_2|NC_017927.1_634299_636432_+	COG2183, Tex, Transcriptional accessory protein [Transcription]	NA|147aa|down_3|NC_017927.1_636418_636859_+	PRK04351, PRK04351, SprT family protein	NA|88aa|down_4|NC_017927.1_636924_637188_+	COG1983, PspC, Putative stress-responsive transcriptional regulator [Transcription / Signal transduction mechanisms]	NA|310aa|down_5|NC_017927.1_637318_638248_+	PRK05428, PRK05428, HPr kinase/phosphorylase; Provisional	NA|264aa|down_6|NC_017927.1_638247_639039_+	PRK12437, PRK12437, prolipoprotein diacylglyceryl transferase; Reviewed	NA|133aa|down_7|NC_017927.1_639161_639560_+	COG4768, COG4768, Uncharacterized protein containing a divergent version of the methyl-accepting chemotaxis-like domain [General function prediction only]	NA|147aa|down_8|NC_017927.1_639572_640013_+	pfam12732, YtxH, YtxH-like protein	NA|99aa|down_9|NC_017927.1_640033_640330_-	pfam11674, DUF3270, Protein of unknown function (DUF3270)
GCF_000262675.1_ASM26267v1	NC_017927	Streptococcus thermophilus MN-ZLW-002, complete sequence	2	905670-905771	2	CRISPRCasFinder	no	csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6,cas2,cas1	cas3,DEDDh,cas9,cas1,cas2,csn2,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6,DinG	Type III-D,Type III-A,Type III-C,Type III-B	GTCCCCTCTCGAGGTAATTAGGTTTATATC	30	0	0	NA	NA	NA	1	1	TypeIII-D,TypeIII-A,TypeIII-C,TypeIII-B	cas3,DEDDh,cas9,cas1,cas2,csn2,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6,DinG	NA,NA|72aa|down_4|NC_017927.1_909081_909297_+,NA|73aa|down_8|NC_017927.1_911038_911257_-	NA|484aa|up_9|NC_017927.1_894431_895883_+	COG3104, PTR2, Dipeptide/tripeptide permease [Amino acid transport and metabolism]	NA|210aa|up_8|NC_017927.1_896579_897209_-	PRK00455, pyrE, orotate phosphoribosyltransferase; Validated	NA|232aa|up_7|NC_017927.1_897297_897993_-	PRK00230, PRK00230, orotidine-5'-phosphate decarboxylase	csm6|392aa|up_6|NC_017927.1_898192_899368_-	cd09699, Csm6_III-A, CRISPR/Cas system-associated protein Csm6	csm5gr7|358aa|up_5|NC_017927.1_899521_900595_-	COG1332, COG1332, CRISPR system related protein, RAMP superfamily [Defense mechanisms]	csm4gr5|300aa|up_4|NC_017927.1_900597_901497_-	pfam17953, Csm4_C, CRISPR Csm4 C-terminal domain	csm3gr7|221aa|up_3|NC_017927.1_901498_902161_-	cd09684, Csm3_III-A, CRISPR/Cas system-associated RAMP superfamily protein Csm3	csm2gr11|127aa|up_2|NC_017927.1_902160_902541_-	pfam03750, Csm2_III-A, Csm2 Type III-A	cas10|759aa|up_1|NC_017927.1_902544_904821_-	cd09680, Cas10_III, CRISPR/Cas system-associated protein Cas10	cas6|244aa|up_0|NC_017927.1_904801_905533_-	TIGR01877, CRISPR-associated_endoribonuclease_Cas6_1, CRISPR-associated endoribonuclease Cas6	cas2|110aa|down_0|NC_017927.1_905871_906201_-	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	cas1|335aa|down_1|NC_017927.1_906200_907205_-	cd09634, Cas1_I-II-III, CRISPR/Cas system-associated protein Cas1	NA|316aa|down_2|NC_017927.1_907343_908291_-	PRK07259, PRK07259, dihydroorotate dehydrogenase	NA|268aa|down_3|NC_017927.1_908309_909113_-	PRK00054, PRK00054, dihydroorotate dehydrogenase electron transfer subunit; Reviewed	NA|72aa|down_4|NC_017927.1_909081_909297_+	NA	NA|183aa|down_5|NC_017927.1_909353_909902_-	cd03135, GATase1_DJ-1, Type 1 glutamine amidotransferase (GATase1)-like domain found in Human DJ-1	NA|70aa|down_6|NC_017927.1_909943_910153_-	pfam05857, TraX, TraX protein	NA|223aa|down_7|NC_017927.1_910168_910837_-	pfam05857, TraX, TraX protein	NA|73aa|down_8|NC_017927.1_911038_911257_-	NA	NA|64aa|down_9|NC_017927.1_911693_911885_-	COG4405, COG4405, Uncharacterized protein conserved in bacteria [Function unknown]
GCF_000262675.1_ASM26267v1	NC_017927	Streptococcus thermophilus MN-ZLW-002, complete sequence	3	1372720-1374472	3,2,3	CRISPRCasFinder,CRT,PILER-CR	no	csn2,cas2,cas1,cas9	cas3,DEDDh,cas9,cas1,cas2,csn2,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6,DinG	Type II-B,Type II-C,Type II-A	GTTTTGGAACCATTCGAAACAACACAGCTCTAAAAC,GTTTTGGAACCATTCGAAACAACACAGCTCTAAAAC,GTTTTGGAACCATTCGAAACAACACAGCTCTAAAAC	36,36,36	0	0	NA	NA	II-A,II-B:II-A,II-B:II-A,II-B	26,26,24	26	TypeII-B,TypeII-C,TypeII-A	cas3,DEDDh,cas9,cas1,cas2,csn2,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6,DinG	NA|66aa|up_9|NC_017927.1_1366430_1366628_-,NA|148aa|up_4|NC_017927.1_1369512_1369956_-,NA|80aa|up_0|NC_017927.1_1372396_1372636_-,NA	NA|66aa|up_9|NC_017927.1_1366430_1366628_-	NA	NA|438aa|up_8|NC_017927.1_1366794_1368108_-	PRK12297, obgE, GTPase CgtA; Reviewed	NA|43aa|up_7|NC_017927.1_1368201_1368330_-	pfam13253, DUF4044, Protein of unknown function (DUF4044)	NA|244aa|up_6|NC_017927.1_1368411_1369143_-	COG1187, RsuA, 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases [Translation, ribosomal structure and biogenesis]	NA|78aa|up_5|NC_017927.1_1369143_1369377_-	COG3708, COG3708, Uncharacterized protein conserved in bacteria [Function unknown]	NA|148aa|up_4|NC_017927.1_1369512_1369956_-	NA	NA|128aa|up_3|NC_017927.1_1369986_1370370_-	COG2050, PaaI, HGG motif-containing thioesterase, possibly involved in aromatic compounds catabolism [Secondary metabolites biosynthesis,    transport, and catabolism]	NA|81aa|up_2|NC_017927.1_1371058_1371301_+	COG2182, MalE, Maltose-binding periplasmic proteins/domains [Carbohydrate transport and metabolism]	NA|297aa|up_1|NC_017927.1_1371468_1372359_+	COG0697, RhaT, Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]	NA|80aa|up_0|NC_017927.1_1372396_1372636_-	NA	csn2|220aa|down_0|NC_017927.1_1374793_1375453_-	cd09758, Csn2, CRISPR/Cas system-associated protein Csn2	cas2|115aa|down_1|NC_017927.1_1375442_1375787_-	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms]	cas1|290aa|down_2|NC_017927.1_1375783_1376653_-	cd09720, Cas1_II, CRISPR/Cas system-associated protein Cas1	cas9|1389aa|down_3|NC_017927.1_1376652_1380819_-	TIGR01865, conserved_hypothetical_protein, CRISPR subtype II/NMENI RNA-guided endonuclease Cas9/Csn1	NA|216aa|down_4|NC_017927.1_1381151_1381799_-	cd07500, HAD_PSP, phosphoserine phosphatase (PSP), similar to Methanococcus Jannaschii PSP and Saccharomyces cerevisiae SER2p	NA|575aa|down_5|NC_017927.1_1381910_1383635_-	PRK04778, PRK04778, septation ring formation regulator EzrA; Provisional	NA|651aa|down_6|NC_017927.1_1383731_1385684_-	PRK05644, gyrB, DNA gyrase subunit B; Validated	NA|187aa|down_7|NC_017927.1_1385684_1386245_-	cd07523, HAD_YsbA-like, uncharacterized family of the haloacid dehalogenase-like superfamily, similar to the uncharacterized Lactococcus lactis YsbA	NA|232aa|down_8|NC_017927.1_1386330_1387026_-	pfam04172, LrgB, LrgB-like family	NA|125aa|down_9|NC_017927.1_1387018_1387393_-	pfam03788, LrgA, LrgA family
GCF_000262675.1_ASM26267v1	NC_017927	Streptococcus thermophilus MN-ZLW-002, complete sequence	4	1589653-1589744	4	CRISPRCasFinder	no	cas3	cas3,DEDDh,cas9,cas1,cas2,csn2,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6,DinG	Unclear	CTTTTCTTTACGATATCAATTTTAACATCTTT	32	0	0	NA	NA	NA	1	1	Unclear	cas3,DEDDh,cas9,cas1,cas2,csn2,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6,DinG	NA|86aa|up_3|NC_017927.1_1585271_1585529_-,NA|143aa|down_7|NC_017927.1_1595646_1596075_-	cas3|673aa|up_9|NC_017927.1_1576721_1578740_-	PRK10917, PRK10917, ATP-dependent DNA helicase RecG; Provisional	NA|368aa|up_8|NC_017927.1_1578868_1579972_-	PRK00053, alr, alanine racemase; Reviewed	NA|120aa|up_7|NC_017927.1_1579992_1580352_-	PRK00070, acpS, 4'-phosphopantetheinyl transferase; Provisional	NA|344aa|up_6|NC_017927.1_1580355_1581387_-	PRK09261, PRK09261, phospho-2-dehydro-3-deoxyheptonate aldolase; Validated	NA|344aa|up_5|NC_017927.1_1581484_1582516_-	COG0722, AroG, 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase [Amino acid transport and metabolism]	NA|850aa|up_4|NC_017927.1_1582539_1585089_-	PRK12904, PRK12904, preprotein translocase subunit SecA; Reviewed	NA|86aa|up_3|NC_017927.1_1585271_1585529_-	NA	NA|316aa|up_2|NC_017927.1_1585615_1586563_-	COG1482, ManA, Phosphomannose isomerase [Carbohydrate transport and metabolism]	NA|298aa|up_1|NC_017927.1_1586628_1587522_-	pfam00480, ROK, ROK family	NA|634aa|up_0|NC_017927.1_1587706_1589608_-	TIGR01996, Includes:_Phosphotransferase_enzyme_IIB_component, PTS system, sucrose-specific IIBC component	NA|481aa|down_0|NC_017927.1_1589856_1591299_+	TIGR01322, Sucrose-6-phosphate_hydrolase, sucrose-6-phosphate hydrolase	NA|322aa|down_1|NC_017927.1_1591307_1592273_+	cd06291, PBP1_Qymf-like, ligand binding domain of the lacI-like transcription regulator from a novel metal-reducing bacterium Alkaliphilus Metalliredigens (strain Qymf) and its close homologs	NA|145aa|down_2|NC_017927.1_1592362_1592797_-	PRK00202, nusB, transcription antitermination factor NusB	NA|130aa|down_3|NC_017927.1_1592789_1593179_-	pfam03780, Asp23, Asp23 family, cell envelope-related function	NA|187aa|down_4|NC_017927.1_1593249_1593810_-	PRK00529, PRK00529, elongation factor P; Validated	NA|152aa|down_5|NC_017927.1_1593922_1594378_-	TIGR02571, putative_dCMP_deaminase, ComE operon protein 2	NA|354aa|down_6|NC_017927.1_1594396_1595458_-	COG0006, PepP, Xaa-Pro aminopeptidase [Amino acid transport and metabolism]	NA|143aa|down_7|NC_017927.1_1595646_1596075_-	NA	NA|198aa|down_8|NC_017927.1_1596119_1596713_-	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms]	NA|130aa|down_9|NC_017927.1_1596681_1597071_-	cd03268, ABC_BcrA_bacitracin_resist, ATP-binding cassette domain of the bacitracin-resistance transporter
