The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NC_017856	Methylophaga frappieri, complete sequence	2697465	210868	221397	2697465	tRNA	Acinetobacter_phage(33.33%)	10	NA	NA
WP_014702844.1|210868_211909_+	anthranilate phosphoribosyltransferase	NA	A0A0N7IRD9	Acinetobacter_phage	47.8	2.6e-86
WP_014702845.1|211901_212702_+	indole-3-glycerol phosphate synthase TrpC	NA	A0A0P0IR83	Acinetobacter_phage	53.6	5.9e-70
WP_050954371.1|212698_213388_-	cAMP-activated global transcriptional regulator CRP	NA	NA	NA	NA	NA
WP_014702847.1|213501_213921_+	OsmC family protein	NA	NA	NA	NA	NA
WP_041366335.1|213932_214214_+	YcgL domain-containing protein	NA	NA	NA	NA	NA
WP_014702849.1|214208_216746_-	DNA mismatch repair protein MutS	NA	A0A1V0SC35	Catovirus	22.8	1.2e-28
WP_014702850.1|216763_217258_+	nicotinamide-nucleotide amidohydrolase family protein	NA	B5TK85	Pseudomonas_phage	40.0	7.5e-23
WP_014702851.1|217316_218360_+	recombinase RecA	NA	A0A0S2MVG1	Bacillus_phage	64.6	2.3e-122
WP_041366337.1|218356_218797_+	recombination regulator RecX	NA	NA	NA	NA	NA
WP_014702853.1|218793_221397_+|tRNA	alanine--tRNA ligase	tRNA	A0A1V0SK38	Klosneuvirus	40.0	2.1e-84
>prophage 2
NC_017856	Methylophaga frappieri, complete sequence	2697465	789425	801155	2697465		Tupanvirus(22.22%)	10	NA	NA
WP_041366482.1|789425_790607_-	aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme	NA	A0A2K9L0G1	Tupanvirus	28.5	1.9e-32
WP_014703334.1|790590_790974_-	MarR family EPS-associated transcriptional regulator	NA	NA	NA	NA	NA
WP_014703335.1|791284_792451_-	nucleotide sugar dehydrogenase	NA	O41091	Paramecium_bursaria_Chlorella_virus	55.8	6.7e-115
WP_014703336.1|792502_794404_-	glutamine--fructose-6-phosphate transaminase (isomerizing)	NA	A7IW18	Paramecium_bursaria_Chlorella_virus	42.4	1.1e-122
WP_050954385.1|794438_796343_-	polysaccharide biosynthesis protein	NA	A0A1V0SAI8	Catovirus	28.0	1.6e-20
WP_014703338.1|796467_797328_-	dTDP-4-dehydrorhamnose reductase	NA	H9NCE8	Sphingomonas_phage	26.4	1.3e-11
WP_014703339.1|797328_797874_-	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	A0A291LA62	Escherichia_phage	49.2	4.1e-46
WP_014703340.1|797873_798758_-	glucose-1-phosphate thymidylyltransferase RfbA	NA	K7QKA7	Escherichia_phage	59.6	1.5e-90
WP_014703341.1|798754_799828_-	dTDP-glucose 4,6-dehydratase	NA	I7HTA3	Enterobacteria_phage	48.9	3.3e-92
WP_014703343.1|800099_801155_+	NAD(P)-dependent alcohol dehydrogenase	NA	A0A2K9L7I1	Tupanvirus	44.6	1.2e-81
>prophage 3
NC_017856	Methylophaga frappieri, complete sequence	2697465	852726	892861	2697465	tail,holin,integrase,head,transposase,protease	Pseudomonas_phage(45.71%)	50	853015:853028	872548:872561
WP_014703388.1|852726_854643_-	ATP-binding cassette domain-containing protein	NA	A0A1V0SGN0	Hokovirus	24.4	4.9e-38
853015:853028	attL	CTCGCCAGGAGTTG	NA	NA	NA	NA
WP_014703389.1|854642_856529_-	ATP-binding cassette domain-containing protein	NA	A0A2K9L3Z8	Tupanvirus	32.4	2.8e-70
WP_014703390.1|856572_857259_-	uracil-DNA glycosylase	NA	A0A1R3T3N6	Sphenicid_alphaherpesvirus	47.1	1.3e-52
WP_014703391.1|857456_857852_+	peptide-methionine (R)-S-oxide reductase MsrB	NA	NA	NA	NA	NA
WP_014703392.1|857838_858108_+	GIY-YIG nuclease family protein	NA	A0A0S3IYG6	Anticarsia_gemmatalis_multiple_nucleopolyhedrovirus	46.4	6.3e-08
WP_014703393.1|858253_858583_-	Mor transcription activator-like protein	NA	NA	NA	NA	NA
WP_014703394.1|858623_859289_-	hypothetical protein	NA	A0A2P9JZH6	Alteromonadaceae_phage	44.9	4.5e-15
WP_014703395.1|859326_859929_-	regulatory protein GemA	NA	NA	NA	NA	NA
WP_041366892.1|859925_860471_-	hypothetical protein	NA	A0A1W6JP41	Morganella_phage	52.7	1.2e-42
WP_187287371.1|860724_860862_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014703398.1|860908_861610_-	DUF2786 domain-containing protein	NA	A0A2P9JZH4	Alteromonadaceae_phage	53.2	1.6e-63
WP_014703400.1|861797_862433_-	DUF3164 family protein	NA	A0A2H4IYN0	uncultured_Caudovirales_phage	43.7	1.6e-46
WP_014703401.1|862461_862722_-	hypothetical protein	NA	NA	NA	NA	NA
WP_151194718.1|862732_863341_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014703403.1|863337_863529_-	carbon storage regulator CsrA	NA	A0A2I7RT00	Vibrio_phage	66.7	4.6e-13
WP_014703404.1|863531_864689_-	AAA family ATPase	NA	A4JWN1	Burkholderia_virus	50.2	3.3e-98
WP_014703405.1|864688_866452_-|integrase,transposase	DDE-type integrase/transposase/recombinase	integrase,transposase	J9STP5	Pseudomonas_phage	47.6	1.6e-147
WP_014703406.1|866448_867354_-	DUF3102 domain-containing protein	NA	A4JWN3	Burkholderia_virus	50.5	2.5e-64
WP_014703407.1|867365_867665_-	helix-turn-helix domain-containing protein	NA	A0A0S4L7B4	Pseudomonas_phage	56.7	8.8e-19
WP_014703408.1|867661_867871_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014703409.1|867908_868109_-	DNA-binding protein	NA	A4JWN7	Burkholderia_virus	57.1	3.8e-10
WP_151194719.1|868225_868681_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014703411.1|868693_869149_+	hypothetical protein	NA	NA	NA	NA	NA
WP_041366494.1|869159_869615_+	thermonuclease family protein	NA	NA	NA	NA	NA
WP_014703413.1|869745_870078_+|holin	putative holin	holin	A4JWP3	Burkholderia_virus	50.4	5.9e-16
WP_014703414.1|870080_870809_+	transglycosylase SLT domain-containing protein	NA	J9SH25	Pseudomonas_phage	55.5	1.6e-61
WP_014703415.1|870799_871231_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014703417.1|871336_871717_+	hypothetical protein	NA	Q5ZQY8	Pseudomonas_phage	32.2	4.1e-05
WP_014703418.1|871815_872127_+	hypothetical protein	NA	A0A0S4L0A3	Pseudomonas_phage	66.7	1.7e-33
WP_014703419.1|872129_872663_+	DUF3486 family protein	NA	A0A2H4JD50	uncultured_Caudovirales_phage	50.8	1.6e-34
872548:872561	attR	CTCGCCAGGAGTTG	NA	NA	NA	NA
WP_014703420.1|872662_874321_+	hypothetical protein	NA	J9RWF2	Pseudomonas_phage	80.7	1.7e-260
WP_014703421.1|874314_875943_+	DUF935 domain-containing protein	NA	J9SVY0	Pseudomonas_phage	43.6	3.0e-113
WP_014703422.1|875929_877171_+	virion morphogenesis protein	NA	J9STS2	Pseudomonas_phage	49.9	6.1e-114
WP_041366496.1|877185_877629_+	phage virion morphogenesis protein	NA	J9SN67	Pseudomonas_phage	35.4	5.5e-25
WP_014703424.1|877881_878961_+|protease	phage protease	protease	J9SH47	Pseudomonas_phage	52.2	2.0e-97
WP_014703425.1|878985_879405_+	hypothetical protein	NA	J9RWG0	Pseudomonas_phage	51.1	4.2e-27
WP_014703426.1|879433_880336_+|head	Mu-like prophage major head subunit gpT family protein	head	M4SRT6	Rhodobacter_phage	48.3	1.0e-78
WP_014703427.1|880420_880963_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014703428.1|880984_881488_+	DUF1320 domain-containing protein	NA	J9SN75	Pseudomonas_phage	57.4	1.9e-37
WP_014703429.1|881487_881937_+	hypothetical protein	NA	A0A0S4L2X9	Pseudomonas_phage	41.4	2.0e-22
WP_014703430.1|881939_882119_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014703431.1|882130_882889_+	hypothetical protein	NA	A0A0S4L1I6	Pseudomonas_phage	39.7	4.2e-41
WP_014703432.1|882888_883389_+	hypothetical protein	NA	A0A0S4L2X3	Pseudomonas_phage	42.6	6.0e-20
WP_014703433.1|883657_883849_+	Com family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_014703434.1|883814_884576_+	DNA adenine methylase	NA	C7BGE1	Burkholderia_phage	65.6	1.4e-97
WP_041366499.1|884726_887510_+|tail	phage tail length tape measure family protein	tail	X4YVF2	Pseudomonas_phage	30.0	2.7e-69
WP_014703436.1|887509_888721_+	hypothetical protein	NA	A0A2D1GMM3	Marinobacter_phage	24.5	2.0e-32
WP_014703437.1|888717_889539_+	phage BR0599 family protein	NA	A0A088F7Z6	Vibrio_phage	29.8	1.3e-16
WP_041366504.1|889776_889974_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014703438.1|889963_892861_+	hypothetical protein	NA	A0A2D0W9F7	Bordetella_phage	32.7	1.9e-118
>prophage 4
NC_017856	Methylophaga frappieri, complete sequence	2697465	1392894	1402645	2697465	tRNA	uncultured_Mediterranean_phage(28.57%)	8	NA	NA
WP_014703944.1|1392894_1394388_-|tRNA	lysine--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	36.6	3.0e-83
WP_151194806.1|1394389_1395467_-	peptide chain release factor 2	NA	A0A0S4KWG0	Pseudomonas_phage	46.6	2.1e-06
WP_014703946.1|1395550_1396396_-	peptidoglycan DD-metalloendopeptidase family protein	NA	A0A1B1PAB5	Streptomyces_phage	38.9	4.4e-07
WP_014703947.1|1396397_1396973_-	DedA family protein	NA	NA	NA	NA	NA
WP_014703948.1|1396972_1397632_-	protein-L-isoaspartate(D-aspartate) O-methyltransferase	NA	A0A1B1IU40	uncultured_Mediterranean_phage	52.0	5.1e-43
WP_014703949.1|1397634_1398381_-	5'/3'-nucleotidase SurE	NA	A0A1B1ITZ2	uncultured_Mediterranean_phage	57.1	3.4e-80
WP_014703950.1|1398499_1400731_-	DNA topoisomerase IV subunit A	NA	G3M9Z5	Bacillus_virus	31.1	2.0e-83
WP_041366982.1|1400749_1402645_-	DNA topoisomerase IV subunit B	NA	A0A0H3UZ54	Geobacillus_virus	29.6	3.7e-70
>prophage 5
NC_017856	Methylophaga frappieri, complete sequence	2697465	1512557	1521858	2697465		Tetraselmis_virus(16.67%)	8	NA	NA
WP_014704072.1|1512557_1513535_+	KpsF/GutQ family sugar-phosphate isomerase	NA	A0A2P0VNK5	Tetraselmis_virus	31.2	2.9e-34
WP_014704073.1|1513548_1514070_+	3-deoxy-manno-octulosonate-8-phosphatase KdsC	NA	E3T535	Cafeteria_roenbergensis_virus	28.1	2.1e-15
WP_151194810.1|1513957_1514635_+	LPS export ABC transporter periplasmic protein LptC	NA	NA	NA	NA	NA
WP_014704075.1|1514615_1515404_+	lipopolysaccharide transport periplasmic protein LptA	NA	NA	NA	NA	NA
WP_014704076.1|1515409_1516135_+	LPS export ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	29.8	8.4e-23
WP_014704077.1|1516186_1518871_+	ABC transporter substrate-binding protein	NA	Q8QKV7	Ectocarpus_siliculosus_virus	29.1	7.1e-35
WP_014704078.1|1518880_1520332_-	exodeoxyribonuclease VII large subunit	NA	A0A2H4UVM9	Bodo_saltans_virus	32.6	5.2e-32
WP_014704079.1|1520394_1521858_+	IMP dehydrogenase	NA	A0A1V0SHK8	Klosneuvirus	41.2	3.8e-91
>prophage 6
NC_017856	Methylophaga frappieri, complete sequence	2697465	2427631	2439668	2697465		Cedratvirus(12.5%)	13	NA	NA
WP_014704981.1|2427631_2428927_+	adenylosuccinate synthase	NA	A0A285PX35	Cedratvirus	36.7	1.2e-72
WP_014704982.1|2428962_2429826_-	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_041366723.1|2429930_2431187_+	serine hydroxymethyltransferase	NA	A0A219Y950	Aeromonas_phage	53.0	1.3e-100
WP_014704984.1|2431208_2431679_+	transcriptional repressor NrdR	NA	NA	NA	NA	NA
WP_014704985.1|2431742_2432840_+	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	NA	A0A1V0SE20	Indivirus	33.3	3.3e-47
WP_014704986.1|2432840_2433485_+	riboflavin synthase	NA	A0A2H4PQS5	Staphylococcus_phage	35.5	9.4e-34
WP_014704987.1|2433481_2434591_+	bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II	NA	M4QPK3	Synechococcus_phage	40.5	1.0e-35
WP_014704988.1|2434593_2435745_+	lipid-A-disaccharide synthase	NA	NA	NA	NA	NA
WP_014704989.1|2435744_2436308_+	ribonuclease HII	NA	E3T5H8	Cafeteria_roenbergensis_virus	42.0	3.3e-27
WP_014704990.1|2436368_2437730_+	polynucleotide adenylyltransferase PcnB	NA	A0A1B1IVF3	uncultured_Mediterranean_phage	34.6	1.3e-24
WP_014704991.1|2437729_2438218_+	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	NA	NA	NA	NA
WP_014704992.1|2438214_2438874_+	deoxynucleoside kinase	NA	NA	NA	NA	NA
WP_014704993.1|2438870_2439668_+	3-methyl-2-oxobutanoate hydroxymethyltransferase	NA	M4QNT1	Ostreococcus_lucimarinus_virus	35.1	5.2e-34
