assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000260715.1_ASM26071v1	NC_017834	Bifidobacterium animalis subsp. animalis ATCC 25527, complete sequence	1	112133-112211	1	CRISPRCasFinder	no		WYL,cas3,DEDDh,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e	Orphan	GGTATGTGCTGGCGGTGCTGTGGGC	25	0	0	NA	NA	NA	1	1	Orphan	WYL,cas3,DEDDh,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e	NA|113aa|up_1|NC_017834.1_109892_110231_+,NA|411aa|down_8|NC_017834.1_124532_125765_-	NA|489aa|up_9|NC_017834.1_98358_99825_-	COG0768, FtsI, Cell division protein FtsI/penicillin-binding protein 2 [Cell envelope biogenesis, outer membrane]	NA|581aa|up_8|NC_017834.1_99817_101560_-	COG0772, FtsW, Bacterial cell division membrane protein [Cell division and chromosome partitioning]	NA|524aa|up_7|NC_017834.1_101562_103134_-	COG0631, PTC1, Serine/threonine protein phosphatase [Signal transduction mechanisms]	NA|182aa|up_6|NC_017834.1_103140_103686_-	cd00060, FHA, Forkhead associated domain (FHA); found in eukaryotic and prokaryotic proteins	NA|234aa|up_5|NC_017834.1_103704_104406_-	pfam12401, DUF3662, Protein of unknown function (DUF2662)	NA|805aa|up_4|NC_017834.1_104802_107217_+	pfam00326, Peptidase_S9, Prolyl oligopeptidase family	NA|351aa|up_3|NC_017834.1_107491_108544_-	TIGR00950, Uncharacterized_inner_membrane_transporter_YicL, Carboxylate/Amino Acid/Amine Transporter	NA|362aa|up_2|NC_017834.1_108628_109714_-	COG2267, PldB, Lysophospholipase [Lipid metabolism]	NA|113aa|up_1|NC_017834.1_109892_110231_+	NA	NA|318aa|up_0|NC_017834.1_110310_111264_+	PRK11088, rrmA, 23S rRNA methyltransferase A; Provisional	NA|85aa|down_0|NC_017834.1_112899_113154_-	COG2261, COG2261, Predicted membrane protein [Function unknown]	NA|83aa|down_1|NC_017834.1_113425_113674_-	COG2261, COG2261, Predicted membrane protein [Function unknown]	NA|485aa|down_2|NC_017834.1_114449_115904_-	PLN02852, PLN02852, ferredoxin-NADP+ reductase	NA|739aa|down_3|NC_017834.1_116322_118539_-	cd07544, P-type_ATPase_HM, P-type heavy metal-transporting ATPase; uncharacterized subfamily	NA|618aa|down_4|NC_017834.1_118833_120687_-	TIGR02037, Probable_periplasmic_serine_protease_do/HhoA-like, periplasmic serine protease, Do/DeqQ family	NA|205aa|down_5|NC_017834.1_120861_121476_+	cd02603, HAD_sEH-N_like, N-terminal lipase phosphatase domain of human soluble epoxide hydrolase, Escherichia coli YihX/HAD4 alpha-D-glucose 1-phosphate phosphatase, and related domains, may be inactive	NA|446aa|down_6|NC_017834.1_121946_123284_+	PRK00112, tgt, queuine tRNA-ribosyltransferase; Provisional	NA|324aa|down_7|NC_017834.1_123511_124483_-	PRK03072, PRK03072, heat shock protein HtpX; Provisional	NA|411aa|down_8|NC_017834.1_124532_125765_-	NA	NA|207aa|down_9|NC_017834.1_125922_126543_+	pfam02586, SRAP, SOS response associated peptidase (SRAP)
GCF_000260715.1_ASM26071v1	NC_017834	Bifidobacterium animalis subsp. animalis ATCC 25527, complete sequence	2	358227-358310	2	CRISPRCasFinder	no		WYL,cas3,DEDDh,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e	Orphan	CTCGCTCTGCGTAAAAAGGGACA	23	0	0	NA	NA	NA	1	1	Orphan	WYL,cas3,DEDDh,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e	NA,NA|207aa|down_0|NC_017834.1_358404_359025_+	NA|185aa|up_9|NC_017834.1_348418_348973_-	PRK11895, ilvH, acetolactate synthase 3 regulatory subunit; Reviewed	NA|643aa|up_8|NC_017834.1_348988_350917_-	PRK07789, PRK07789, acetolactate synthase 1 catalytic subunit; Validated	NA|259aa|up_7|NC_017834.1_351314_352091_-	PRK00102, rnc, ribonuclease III; Reviewed	NA|65aa|up_6|NC_017834.1_352454_352649_-	PRK12286, rpmF, 50S ribosomal protein L32; Reviewed	NA|199aa|up_5|NC_017834.1_352727_353324_-	pfam02620, DUF177, Uncharacterized ACR, COG1399	NA|234aa|up_4|NC_017834.1_353430_354132_-	cd06503, ATP-synt_Fo_b, F-type ATP synthase, membrane subunit b	NA|160aa|up_3|NC_017834.1_354182_354662_-	PRK00168, coaD, phosphopantetheine adenylyltransferase; Provisional	NA|98aa|up_2|NC_017834.1_354837_355131_+	pfam11238, DUF3039, Protein of unknown function (DUF3039)	NA|336aa|up_1|NC_017834.1_355212_356220_-	cd19089, AKR_AKR14A1_2, AKR14A family of aldo-keto reductase (AKR)	NA|441aa|up_0|NC_017834.1_356298_357621_-	PRK09243, PRK09243, nicotinate phosphoribosyltransferase; Validated	NA|207aa|down_0|NC_017834.1_358404_359025_+	NA	NA|247aa|down_1|NC_017834.1_359497_360238_+	PRK00173, rph, ribonuclease PH; Reviewed	NA|226aa|down_2|NC_017834.1_360266_360944_+	PRK00120, PRK00120, dITP/XTP pyrophosphatase; Reviewed	NA|428aa|down_3|NC_017834.1_360985_362269_+	pfam02388, FemAB, FemAB family	NA|336aa|down_4|NC_017834.1_362298_363306_-	COG0679, COG0679, Predicted permeases [General function prediction only]	NA|404aa|down_5|NC_017834.1_363723_364935_+	cd02509, GDP-M1P_Guanylyltransferase, GDP-M1P_Guanylyltransferase catalyzes the formation of GDP-Mannose	NA|566aa|down_6|NC_017834.1_365224_366922_+	PRK00179, pgi, glucose-6-phosphate isomerase; Reviewed	NA|122aa|down_7|NC_017834.1_368960_369326_+	PRK05338, rplS, 50S ribosomal protein L19; Provisional	NA|242aa|down_8|NC_017834.1_369539_370265_+	TIGR02227, Inactive_signal_peptidase_IA	NA|259aa|down_9|NC_017834.1_370309_371086_+	PRK00015, rnhB, ribonuclease HII; Validated
GCF_000260715.1_ASM26071v1	NC_017834	Bifidobacterium animalis subsp. animalis ATCC 25527, complete sequence	3	1611546-1611710	1	PILER-CR	no		WYL,cas3,DEDDh,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e	Orphan	CCCATGCGTAAAAAGGGACATT	22	0	0	NA	NA	NA	2	2	Orphan	WYL,cas3,DEDDh,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e	NA,NA|150aa|down_7|NC_017834.1_1618604_1619054_-	NA|268aa|up_9|NC_017834.1_1596945_1597749_-	COG1349, GlpR, Transcriptional regulators of sugar metabolism [Transcription / Carbohydrate transport and metabolism]	NA|309aa|up_8|NC_017834.1_1597993_1598920_-	cd06442, DPM1_like, DPM1_like represents putative enzymes similar to eukaryotic DPM1	NA|384aa|up_7|NC_017834.1_1599075_1600227_+	PRK05286, PRK05286, quinone-dependent dihydroorotate dehydrogenase	NA|377aa|up_6|NC_017834.1_1600652_1601783_-	cd02932, OYE_YqiM_FMN, Old yellow enzyme (OYE) YqjM-like FMN binding domain	NA|741aa|up_5|NC_017834.1_1602335_1604558_-	TIGR02074, Includes:_Penicillin-insensitive_transglycosylase, penicillin-binding protein, 1A family	NA|242aa|up_4|NC_017834.1_1604689_1605415_-	COG0664, Crp, cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms]	NA|388aa|up_3|NC_017834.1_1605490_1606654_-	cd16443, LplA, lipoate-protein ligase	NA|155aa|up_2|NC_017834.1_1606751_1607216_-	pfam05154, TM2, TM2 domain	NA|347aa|up_1|NC_017834.1_1607906_1608947_-	PRK03437, PRK03437, 3-isopropylmalate dehydrogenase; Provisional	NA|798aa|up_0|NC_017834.1_1609114_1611508_-	COG1770, PtrB, Protease II [Amino acid transport and metabolism]	NA|504aa|down_0|NC_017834.1_1611825_1613337_-	pfam09949, DUF2183, Uncharacterized conserved protein (DUF2183)	NA|137aa|down_1|NC_017834.1_1613393_1613804_-	PRK01202, PRK01202, glycine cleavage system protein GcvH	NA|370aa|down_2|NC_017834.1_1613867_1614977_-	COG2816, NPY1, NTP pyrophosphohydrolases containing a Zn-finger, probably nucleic-acid-binding [DNA replication, recombination, and repair]	NA|309aa|down_3|NC_017834.1_1614976_1615903_-	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|208aa|down_4|NC_017834.1_1615982_1616606_-	pfam16262, DUF4916, Domain of unknown function (DUF4916)	NA|132aa|down_5|NC_017834.1_1616782_1617178_+	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|349aa|down_6|NC_017834.1_1617450_1618497_+	COG3583, COG3583, Uncharacterized protein conserved in bacteria [Function unknown]	NA|150aa|down_7|NC_017834.1_1618604_1619054_-	NA	NA|631aa|down_8|NC_017834.1_1619289_1621182_-	pfam13196, DUF4012, Protein of unknown function (DUF4012)	NA|297aa|down_9|NC_017834.1_1621331_1622222_-	TIGR01207, Glucose-1-phosphate_thymidylyltransferase_1, glucose-1-phosphate thymidylyltransferase, short form
GCF_000260715.1_ASM26071v1	NC_017834	Bifidobacterium animalis subsp. animalis ATCC 25527, complete sequence	4	1656537-1657848	3,1,2	CRISPRCasFinder,CRT,PILER-CR	no	cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3	WYL,cas3,DEDDh,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e	Type I-E	CGGATCATCCCCGCCTGTGCGGGGCAAAC,CGGATCATCCCCGCCTGTGCGGGGCAAAC,CGGATCATCCCCGCCTGTGCGGGGCAAAC	29,29,29	0	0	NA	NA	I-C,I-E,II-B:I-C,I-E,II-B:I-C,I-E,II-B	21,21,19	21	TypeI-E	WYL,cas3,DEDDh,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e	NA,NA	NA|453aa|up_9|NC_017834.1_1638765_1640124_-	PRK00701, PRK00701, divalent metal cation transporter MntH	NA|243aa|up_8|NC_017834.1_1640233_1640962_-	pfam07510, DUF1524, Protein of unknown function (DUF1524)	NA|292aa|up_7|NC_017834.1_1641120_1641996_+	PRK04180, PRK04180, pyridoxal 5'-phosphate synthase lyase subunit PdxS	NA|217aa|up_6|NC_017834.1_1642022_1642673_+	PRK13525, PRK13525, pyridoxal 5'-phosphate synthase glutaminase subunit PdxT	NA|1195aa|up_5|NC_017834.1_1642752_1646337_-	COG4988, CydD, ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]	NA|607aa|up_4|NC_017834.1_1646589_1648410_+	cd05907, VL_LC_FACS_like, Long-chain fatty acid CoA synthetases and Bubblegum-like very long-chain fatty acid CoA synthetases	NA|463aa|up_3|NC_017834.1_1648480_1649869_-	PRK00148, PRK00148, Maf-like protein; Reviewed	NA|189aa|up_2|NC_017834.1_1650047_1650614_+	cd16343, LMWPTP, Low molecular weight protein tyrosine phosphatase	NA|590aa|up_1|NC_017834.1_1650696_1652466_-	pfam13196, DUF4012, Protein of unknown function (DUF4012)	NA|202aa|up_0|NC_017834.1_1655196_1655802_+	PRK12704, PRK12704, phosphodiesterase; Provisional	cas2|122aa|down_0|NC_017834.1_1658598_1658964_-	pfam09707, Cas_Cas2CT1978, CRISPR-associated protein (Cas_Cas2CT1978)	cas1|323aa|down_1|NC_017834.1_1658998_1659967_-	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas6e|225aa|down_2|NC_017834.1_1659990_1660665_-	pfam08798, CRISPR_assoc, CRISPR associated protein	cas5|258aa|down_3|NC_017834.1_1660667_1661441_-	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas7|393aa|down_4|NC_017834.1_1661443_1662622_-	pfam09344, Cas_CT1975, CT1975-like protein	cse2gr11|223aa|down_5|NC_017834.1_1662669_1663338_-	pfam09485, CRISPR_Cse2, CRISPR-associated protein Cse2 (CRISPR_cse2)	cas8e|560aa|down_6|NC_017834.1_1663340_1665020_-	pfam09481, CRISPR_Cse1, CRISPR-associated protein Cse1 (CRISPR_cse1)	cas3|1055aa|down_7|NC_017834.1_1665009_1668174_-	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3	NA|328aa|down_8|NC_017834.1_1668578_1669562_-	PRK01212, PRK01212, homoserine kinase; Provisional	NA|437aa|down_9|NC_017834.1_1669624_1670935_-	PRK06349, PRK06349, homoserine dehydrogenase; Provisional
GCF_000260715.1_ASM26071v1	NC_017834	Bifidobacterium animalis subsp. animalis ATCC 25527, complete sequence	5	1657925-1658503	3,4,2	PILER-CR,CRISPRCasFinder,CRT	no	cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3	WYL,cas3,DEDDh,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e	Type I-E	CGGATCATCCCCGCCTGTGCGGGGCAAAC,CGGATCATCCCCGCCTGTGCGGGGCAAAC,CGGATCATCCCCGCCTGTGCGGGGCAAAC	29,29,29	0	0	NA	NA	I-C,I-E,II-B:I-C,I-E,II-B:I-C,I-E,II-B	9,9,9	9	TypeI-E	WYL,cas3,DEDDh,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e	NA,NA	NA|453aa|up_9|NC_017834.1_1638765_1640124_-	PRK00701, PRK00701, divalent metal cation transporter MntH	NA|243aa|up_8|NC_017834.1_1640233_1640962_-	pfam07510, DUF1524, Protein of unknown function (DUF1524)	NA|292aa|up_7|NC_017834.1_1641120_1641996_+	PRK04180, PRK04180, pyridoxal 5'-phosphate synthase lyase subunit PdxS	NA|217aa|up_6|NC_017834.1_1642022_1642673_+	PRK13525, PRK13525, pyridoxal 5'-phosphate synthase glutaminase subunit PdxT	NA|1195aa|up_5|NC_017834.1_1642752_1646337_-	COG4988, CydD, ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]	NA|607aa|up_4|NC_017834.1_1646589_1648410_+	cd05907, VL_LC_FACS_like, Long-chain fatty acid CoA synthetases and Bubblegum-like very long-chain fatty acid CoA synthetases	NA|463aa|up_3|NC_017834.1_1648480_1649869_-	PRK00148, PRK00148, Maf-like protein; Reviewed	NA|189aa|up_2|NC_017834.1_1650047_1650614_+	cd16343, LMWPTP, Low molecular weight protein tyrosine phosphatase	NA|590aa|up_1|NC_017834.1_1650696_1652466_-	pfam13196, DUF4012, Protein of unknown function (DUF4012)	NA|202aa|up_0|NC_017834.1_1655196_1655802_+	PRK12704, PRK12704, phosphodiesterase; Provisional	cas2|122aa|down_0|NC_017834.1_1658598_1658964_-	pfam09707, Cas_Cas2CT1978, CRISPR-associated protein (Cas_Cas2CT1978)	cas1|323aa|down_1|NC_017834.1_1658998_1659967_-	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas6e|225aa|down_2|NC_017834.1_1659990_1660665_-	pfam08798, CRISPR_assoc, CRISPR associated protein	cas5|258aa|down_3|NC_017834.1_1660667_1661441_-	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas7|393aa|down_4|NC_017834.1_1661443_1662622_-	pfam09344, Cas_CT1975, CT1975-like protein	cse2gr11|223aa|down_5|NC_017834.1_1662669_1663338_-	pfam09485, CRISPR_Cse2, CRISPR-associated protein Cse2 (CRISPR_cse2)	cas8e|560aa|down_6|NC_017834.1_1663340_1665020_-	pfam09481, CRISPR_Cse1, CRISPR-associated protein Cse1 (CRISPR_cse1)	cas3|1055aa|down_7|NC_017834.1_1665009_1668174_-	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3	NA|328aa|down_8|NC_017834.1_1668578_1669562_-	PRK01212, PRK01212, homoserine kinase; Provisional	NA|437aa|down_9|NC_017834.1_1669624_1670935_-	PRK06349, PRK06349, homoserine dehydrogenase; Provisional
GCF_000260715.1_ASM26071v1	NC_017834	Bifidobacterium animalis subsp. animalis ATCC 25527, complete sequence	6	1870626-1870722	5	CRISPRCasFinder	no		WYL,cas3,DEDDh,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e	Orphan	CCACACACGACCCAAATTACGCA	23	0	0	NA	NA	NA	1	1	Orphan	WYL,cas3,DEDDh,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e	NA|84aa|up_3|NC_017834.1_1853832_1854084_-,NA|474aa|down_2|NC_017834.1_1873290_1874712_+,NA|79aa|down_4|NC_017834.1_1876208_1876445_-,NA|319aa|down_6|NC_017834.1_1879246_1880203_+	NA|337aa|up_9|NC_017834.1_1846118_1847129_+	COG1609, PurR, Transcriptional regulators [Transcription]	NA|444aa|up_8|NC_017834.1_1847478_1848810_-	pfam13416, SBP_bac_8, Bacterial extracellular solute-binding protein	NA|592aa|up_7|NC_017834.1_1849167_1850943_+	cd11332, AmyAc_OligoGlu_TS, Alpha amylase catalytic domain found in oligo-1,6-glucosidase (also called isomaltase; sucrase-isomaltase; alpha-limit dextrinase), trehalose synthase (also called maltose alpha-D-glucosyltransferase), and related proteins	NA|223aa|up_6|NC_017834.1_1851279_1851948_-	pfam00300, His_Phos_1, Histidine phosphatase superfamily (branch 1)	NA|139aa|up_5|NC_017834.1_1852110_1852527_+	pfam14019, DUF4235, Protein of unknown function (DUF4235)	NA|259aa|up_4|NC_017834.1_1852626_1853403_+	cd02146, NfsA-like, nitroreductase similar to Escherichia coli NfsA	NA|84aa|up_3|NC_017834.1_1853832_1854084_-	NA	NA|526aa|up_2|NC_017834.1_1854129_1855707_-	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily	NA|614aa|up_1|NC_017834.1_1861996_1863838_+	PRK02628, nadE, NAD synthetase; Reviewed	NA|90aa|up_0|NC_017834.1_1864247_1864517_-	TIGR02384, Putative_antitoxin_RelB, addiction module antitoxin, RelB/DinJ family	NA|253aa|down_0|NC_017834.1_1870863_1871622_+	cd01410, SIRT7, SIRT7: Eukaryotic and prokaryotic group (class4) which includes human sirtuin SIRT6, SIRT7, and several bacterial homologs; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation	NA|422aa|down_1|NC_017834.1_1871779_1873045_-	PRK08198, PRK08198, threonine dehydratase; Provisional	NA|474aa|down_2|NC_017834.1_1873290_1874712_+	NA	NA|363aa|down_3|NC_017834.1_1875076_1876165_+	pfam16013, DUF4781, Domain of unknown function (DUF4781)	NA|79aa|down_4|NC_017834.1_1876208_1876445_-	NA	NA|612aa|down_5|NC_017834.1_1876610_1878446_-	cd11333, AmyAc_SI_OligoGlu_DGase, Alpha amylase catalytic domain found in Sucrose isomerases, oligo-1,6-glucosidase (also called isomaltase; sucrase-isomaltase; alpha-limit dextrinase), dextran glucosidase (also called glucan 1,6-alpha-glucosidase), and related proteins	NA|319aa|down_6|NC_017834.1_1879246_1880203_+	NA	NA|631aa|down_7|NC_017834.1_1880547_1882440_-	pfam05691, Raffinose_syn, Raffinose synthase or seed imbibition protein Sip1	NA|283aa|down_8|NC_017834.1_1883358_1884207_-	COG0395, UgpE, ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism]	NA|318aa|down_9|NC_017834.1_1884269_1885223_-	COG1175, UgpA, ABC-type sugar transport systems, permease components [Carbohydrate transport and metabolism]
