assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000259545.1_ASM25954v1	NC_017764	Pasteurella multocida subsp. multocida str. 3480, complete genome	1	1070687-1071134	1,1,1	CRT,CRISPRCasFinder,PILER-CR	no	cas3-cas2,cas1,cas6f,cas7f,cas5f,cas8f	DEDDh,cas3,DinG,cas3-cas2,cas1,cas6f,cas7f,cas5f,cas8f,RT,csa3	Type I-F	TTTCTAAGCCATCTACACGATGGTGAAC,TTTCTAAGCCATCTACACGATGGTGAACT,TTTCTAAGCCATCTACACGATGGTGAAC	28,29,28	0	0	NA	NA	NA:NA:NA	7,6,5	7	TypeI-F	DEDDh,cas3,DinG,cas3-cas2,cas1,cas6f,cas7f,cas5f,cas8f,RT,csa3	NA|197aa|up_3|NC_017764.1_1063649_1064240_-,NA	NA|108aa|up_9|NC_017764.1_1059036_1059360_-	TIGR02011, Protein_yfhF	NA|129aa|up_8|NC_017764.1_1059429_1059816_-	PRK11325, PRK11325, scaffold protein; Provisional	NA|405aa|up_7|NC_017764.1_1060047_1061262_-	PRK14012, PRK14012, IscS subfamily cysteine desulfurase	NA|155aa|up_6|NC_017764.1_1061309_1061774_-	TIGR02010, Putative_HTH-type_transcriptional_regulator, iron-sulfur cluster assembly transcription factor IscR	NA|239aa|up_5|NC_017764.1_1061852_1062569_-	COG0565, LasT, rRNA methylase [Translation, ribosomal structure and biogenesis]	NA|268aa|up_4|NC_017764.1_1062782_1063586_+	PRK10757, PRK10757, inositol-1-monophosphatase	NA|197aa|up_3|NC_017764.1_1063649_1064240_-	NA	NA|619aa|up_2|NC_017764.1_1064380_1066237_-	PRK11091, PRK11091, aerobic respiration control sensor protein ArcB; Provisional	cas3-cas2|1107aa|up_1|NC_017764.1_1066294_1069615_-	cd09673, Cas3_Cas2_I-F, CRISPR/Cas system-associated protein Cas3/Cas2	cas1|327aa|up_0|NC_017764.1_1069595_1070576_-	cd09718, Cas1_I-F, CRISPR/Cas system-associated protein Cas1	cas6f|187aa|down_0|NC_017764.1_1071272_1071833_-	TIGR02563, conserved_hypothetical_protein, CRISPR-associated endoribonuclease Cas6/Csy4, subtype I-F/YPEST	cas7f|337aa|down_1|NC_017764.1_1071835_1072846_-	pfam09615, Cas_Csy3, CRISPR-associated protein (Cas_Csy3)	cas5f|328aa|down_2|NC_017764.1_1072848_1073832_-	TIGR02565, conserved_hypothetical_protein, CRISPR type I-F/YPEST-associated protein Csy2	cas8f|445aa|down_3|NC_017764.1_1073841_1075176_-	TIGR02564, conserved_hypothetical_protein, CRISPR type I-F/YPEST-associated protein Csy1	NA|720aa|down_4|NC_017764.1_1075406_1077566_-	PRK11783, rlmL, bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL	NA|683aa|down_5|NC_017764.1_1077699_1079748_-	PRK00133, metG, methionyl-tRNA synthetase; Reviewed	NA|371aa|down_6|NC_017764.1_1079929_1081042_+	PRK11670, PRK11670, iron-sulfur cluster carrier protein ApbC	NA|90aa|down_7|NC_017764.1_1081179_1081449_-	PRK05626, rpsO, 30S ribosomal protein S15; Reviewed	NA|964aa|down_8|NC_017764.1_1081615_1084507_-	TIGR01786, hemoglobin-haptoglobin-binding_protein, TonB-dependent hemoglobin/transferrin/lactoferrin receptor family protein	NA|164aa|down_9|NC_017764.1_1085079_1085571_-	COG3721, HugX, Putative heme iron utilization protein [Inorganic ion transport and metabolism]
GCF_000259545.1_ASM25954v1	NC_017764	Pasteurella multocida subsp. multocida str. 3480, complete genome	2	1193624-1193712	2	CRISPRCasFinder	no		DEDDh,cas3,DinG,cas3-cas2,cas1,cas6f,cas7f,cas5f,cas8f,RT,csa3	Orphan	AAATGTGGTGCACATGACCACAAAGCAAAAGC	32	0	0	NA	NA	NA	1	1	Orphan	DEDDh,cas3,DinG,cas3-cas2,cas1,cas6f,cas7f,cas5f,cas8f,RT,csa3	NA,NA|67aa|down_2|NC_017764.1_1195557_1195758_-	NA|581aa|up_9|NC_017764.1_1184641_1186384_-	PRK00293, dipZ, thiol:disulfide interchange protein precursor; Provisional	NA|89aa|up_8|NC_017764.1_1186580_1186847_+	PRK01678, rpmE2, type B 50S ribosomal protein L31	NA|47aa|up_7|NC_017764.1_1186857_1186998_+	PRK00831, rpmJ, 50S ribosomal protein L36; Validated	NA|237aa|up_6|NC_017764.1_1187235_1187946_+	PRK11173, PRK11173, two-component response regulator; Provisional	NA|493aa|up_5|NC_017764.1_1187994_1189473_-	PRK10922, PRK10922, 4-hydroxy-3-polyprenylbenzoate decarboxylase	NA|161aa|up_4|NC_017764.1_1189632_1190115_+	PRK05422, smpB, SsrA-binding protein SmpB	NA|70aa|up_3|NC_017764.1_1190167_1190377_-	COG3585, MopI, Molybdopterin-binding protein [Coenzyme metabolism]	NA|458aa|up_2|NC_017764.1_1190464_1191838_-	PRK10337, PRK10337, sensor protein QseC; Provisional	NA|224aa|up_1|NC_017764.1_1191824_1192496_-	PRK10336, PRK10336, two-component system response regulator QseB	NA|150aa|up_0|NC_017764.1_1192972_1193422_+	COG2259, COG2259, Predicted membrane protein [Function unknown]	NA|307aa|down_0|NC_017764.1_1193861_1194782_+	COG3220, COG3220, Uncharacterized protein conserved in bacteria [Function unknown]	NA|240aa|down_1|NC_017764.1_1194771_1195491_+	COG3219, COG3219, Uncharacterized protein conserved in bacteria [Function unknown]	NA|67aa|down_2|NC_017764.1_1195557_1195758_-	NA	NA|184aa|down_3|NC_017764.1_1195758_1196310_-	PRK12530, PRK12530, RNA polymerase sigma factor; Provisional	NA|116aa|down_4|NC_017764.1_1196530_1196878_-	COG1314, SecG, Preprotein translocase subunit SecG [Intracellular trafficking and secretion]	NA|651aa|down_5|NC_017764.1_1197095_1199048_-	PRK07726, PRK07726, DNA topoisomerase 3	NA|201aa|down_6|NC_017764.1_1199057_1199660_-	PRK00076, recR, recombination protein RecR; Reviewed	NA|110aa|down_7|NC_017764.1_1199861_1200191_-	PRK00153, PRK00153, YbaB/EbfC family nucleoid-associated protein	NA|869aa|down_8|NC_017764.1_1200419_1203026_+	PRK09238, PRK09238, bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase; Validated	NA|343aa|down_9|NC_017764.1_1203127_1204156_+	cd13544, PBP2_Fbp_like_1, Substrate binding domain of a putative ferric iron transporter, a member of the type 2 periplasmic binding fold superfamily
GCF_000259545.1_ASM25954v1	NC_017764	Pasteurella multocida subsp. multocida str. 3480, complete genome	3	1618012-1618760	3,2,2	CRISPRCasFinder,CRT,PILER-CR	no	cas3	DEDDh,cas3,DinG,cas3-cas2,cas1,cas6f,cas7f,cas5f,cas8f,RT,csa3	Unclear	TTTCTAAGCTGCCTATACGGCAGTTAAC,TTTCTAAGCTGCCTATACGGCAGTTAAC,TTTCTAAGCTGCCTATACGGCAGTTAAC	28,28,28	0	0	NA	NA	I-F:I-F:I-F	12,12,11	12	Unclear	DEDDh,cas3,DinG,cas3-cas2,cas1,cas6f,cas7f,cas5f,cas8f,RT,csa3	NA,NA	NA|529aa|up_9|NC_017764.1_1606119_1607706_-	COG1620, LldP, L-lactate permease [Energy production and conversion]	NA|456aa|up_8|NC_017764.1_1608064_1609432_-	PRK09285, PRK09285, adenylosuccinate lyase; Provisional	NA|204aa|up_7|NC_017764.1_1609459_1610071_-	COG2915, COG2915, Uncharacterized protein involved in purine metabolism [General function prediction only]	NA|309aa|up_6|NC_017764.1_1610256_1611183_+	PRK09434, PRK09434, aminoimidazole riboside kinase; Provisional	NA|481aa|up_5|NC_017764.1_1611220_1612663_+	COG1621, SacC, Beta-fructosidases (levanase/invertase) [Carbohydrate transport and metabolism]	NA|340aa|up_4|NC_017764.1_1612688_1613708_+	TIGR02417, Fructose_repressor_Catabolite_repressor/activator	NA|475aa|up_3|NC_017764.1_1613935_1615360_+	TIGR01996, Includes:_Phosphotransferase_enzyme_IIB_component, PTS system, sucrose-specific IIBC component	NA|136aa|up_2|NC_017764.1_1615475_1615883_+	COG2847, COG2847, Copper(I)-binding protein [Inorganic ion transport and    metabolism]	NA|349aa|up_1|NC_017764.1_1615951_1616998_+	PRK10916, PRK10916, ADP-heptose--LPS heptosyltransferase RfaF	NA|322aa|up_0|NC_017764.1_1616994_1617960_+	PRK10964, PRK10964, lipopolysaccharide heptosyltransferase RfaC	cas3|443aa|down_0|NC_017764.1_1618907_1620236_-	PRK11192, PRK11192, ATP-dependent RNA helicase SrmB; Provisional	NA|238aa|down_1|NC_017764.1_1620347_1621061_+	COG4123, COG4123, Predicted O-methyltransferase [General function prediction only]	NA|235aa|down_2|NC_017764.1_1621108_1621813_-	COG3201, PnuC, Nicotinamide mononucleotide transporter [Coenzyme metabolism]	NA|220aa|down_3|NC_017764.1_1625073_1625733_+	PRK10158, PRK10158, bifunctional tRNA pseudouridine(32) synthase/23S rRNA pseudouridine(746) synthase RluA	NA|190aa|down_4|NC_017764.1_1625796_1626366_+	pfam04220, YihI, Der GTPase activator (YihI)	NA|143aa|down_5|NC_017764.1_1626371_1626800_+	pfam10675, DUF2489, Protein of unknown function (DUF2489)	NA|456aa|down_6|NC_017764.1_1626823_1628191_+	PRK09249, PRK09249, coproporphyrinogen dehydrogenase	NA|223aa|down_7|NC_017764.1_1628231_1628900_+	cd02149, NfsB-like, nitroreductase similar to Escherichia coli NfsB	NA|373aa|down_8|NC_017764.1_1629041_1630160_+	pfam03702, AnmK, Anhydro-N-acetylmuramic acid kinase	NA|468aa|down_9|NC_017764.1_1632940_1634344_-	cd01456, vWA_ywmD_type, VWA ywmD type:Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF)
GCF_000259545.1_ASM25954v1	NC_017764	Pasteurella multocida subsp. multocida str. 3480, complete genome	4	1698345-1698440	4	CRISPRCasFinder	no		DEDDh,cas3,DinG,cas3-cas2,cas1,cas6f,cas7f,cas5f,cas8f,RT,csa3	Orphan	CCTTTTTTATGGACTCGCAAAAATC	25	0	0	NA	NA	NA	1	1	Orphan	DEDDh,cas3,DinG,cas3-cas2,cas1,cas6f,cas7f,cas5f,cas8f,RT,csa3	NA|144aa|up_5|NC_017764.1_1695434_1695866_-,NA|109aa|up_4|NC_017764.1_1695862_1696189_-,NA|122aa|up_3|NC_017764.1_1696181_1696547_-,NA|132aa|up_2|NC_017764.1_1696581_1696977_-,NA|121aa|up_0|NC_017764.1_1697652_1698015_-,NA|92aa|down_0|NC_017764.1_1698552_1698828_-,NA|96aa|down_1|NC_017764.1_1699009_1699297_-,NA|141aa|down_3|NC_017764.1_1700029_1700452_-,NA|267aa|down_5|NC_017764.1_1700879_1701680_-	NA|170aa|up_9|NC_017764.1_1688461_1688971_+	PRK10751, PRK10751, molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional	NA|462aa|up_8|NC_017764.1_1688980_1690366_+	PRK10504, PRK10504, putative transporter; Provisional	NA|317aa|up_7|NC_017764.1_1691236_1692187_-	COG4823, AbiF, Abortive infection bacteriophage resistance protein [Defense mechanisms]	NA|726aa|up_6|NC_017764.1_1693264_1695442_-	COG5519, COG5519, Superfamily II helicase and inactivated derivatives [DNA replication, recombination, and repair]	NA|144aa|up_5|NC_017764.1_1695434_1695866_-	NA	NA|109aa|up_4|NC_017764.1_1695862_1696189_-	NA	NA|122aa|up_3|NC_017764.1_1696181_1696547_-	NA	NA|132aa|up_2|NC_017764.1_1696581_1696977_-	NA	NA|187aa|up_1|NC_017764.1_1696969_1697530_-	pfam10554, Phage_ASH, Ash protein family	NA|121aa|up_0|NC_017764.1_1697652_1698015_-	NA	NA|92aa|down_0|NC_017764.1_1698552_1698828_-	NA	NA|96aa|down_1|NC_017764.1_1699009_1699297_-	NA	NA|240aa|down_2|NC_017764.1_1699289_1700009_-	COG3646, COG3646, Uncharacterized phage-encoded protein [Function unknown]	NA|141aa|down_3|NC_017764.1_1700029_1700452_-	NA	NA|66aa|down_4|NC_017764.1_1700461_1700659_-	pfam12728, HTH_17, Helix-turn-helix domain	NA|267aa|down_5|NC_017764.1_1700879_1701680_-	NA	NA|428aa|down_6|NC_017764.1_1702207_1703491_-	PRK09692, PRK09692, integrase; Provisional	NA|461aa|down_7|NC_017764.1_1704119_1705502_+	PRK04311, PRK04311, selenocysteine synthase; Provisional	NA|311aa|down_8|NC_017764.1_1705538_1706471_-	cd02651, nuc_hydro_IU_UC_XIUA, nuc_hydro_IU_UC_XIUA: inosine-uridine preferring, xanthosine-inosine-uridine-adenosine-preferring and, uridine-cytidine preferring nucleoside hydrolases	NA|625aa|down_9|NC_017764.1_1706691_1708566_+	PRK10512, PRK10512, selenocysteinyl-tRNA-specific translation factor; Provisional
