assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000259175.1_ASM25917v1	NC_017731	Providencia stuartii MRSN 2154, complete sequence	1	3363490-3363650	1	CRISPRCasFinder	no		cas3,DEDDh,csa3,WYL,DinG,cas1,cas3-cas2,cas8f,cas5f,cas7f,cas6f	Orphan	TTGACTTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCATCT	53	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,csa3,WYL,DinG,cas1,cas3-cas2,cas8f,cas5f,cas7f,cas6f	NA,NA	NA|380aa|up_9|NC_017731.1_3355950_3357090_+	PRK15003, PRK15003, cytochrome d ubiquinol oxidase subunit II	NA|38aa|up_8|NC_017731.1_3357102_3357216_+	pfam08173, YbgT_YccB, Membrane bound YbgT-like protein	NA|96aa|up_7|NC_017731.1_3357222_3357510_+	PRK10588, PRK10588, hypothetical protein; Provisional	NA|135aa|up_6|NC_017731.1_3357633_3358038_+	PRK10800, PRK10800, acyl-CoA thioesterase YbgC; Provisional	NA|228aa|up_5|NC_017731.1_3358034_3358718_+	PRK10801, PRK10801, Tol-Pal system protein TolQ	NA|141aa|up_4|NC_017731.1_3358735_3359158_+	PRK11024, PRK11024, colicin uptake protein TolR; Provisional	NA|373aa|up_3|NC_017731.1_3359194_3360313_+	PRK09510, tolA, cell envelope integrity inner membrane protein TolA; Provisional	NA|431aa|up_2|NC_017731.1_3360452_3361745_+	PRK03629, tolB, Tol-Pal system protein TolB	NA|166aa|up_1|NC_017731.1_3361787_3362285_+	PRK10802, PRK10802, peptidoglycan-associated lipoprotein Pal	NA|256aa|up_0|NC_017731.1_3362307_3363075_+	PRK10803, PRK10803, tol-pal system protein YbgF; Provisional	NA|249aa|down_0|NC_017731.1_3364112_3364859_+	cd03397, PAP2_acid_phosphatase, PAP2, bacterial acid phosphatase or class A non-specific acid phosphatases	NA|292aa|down_1|NC_017731.1_3364938_3365814_-	pfam04439, Adenyl_transf, Streptomycin adenylyltransferase	NA|347aa|down_2|NC_017731.1_3366063_3367104_+	PRK09375, PRK09375, quinolinate synthase NadA	NA|239aa|down_3|NC_017731.1_3367181_3367898_+	PRK15397, PRK15397, nicotinamide riboside transporter PnuC; Provisional	NA|352aa|down_4|NC_017731.1_3368265_3369321_+	PRK09261, PRK09261, phospho-2-dehydro-3-deoxyheptonate aldolase; Validated	NA|229aa|down_5|NC_017731.1_3369871_3370558_+	COG3637, COG3637, Opacity protein and related surface antigens [Cell envelope biogenesis, outer membrane]	NA|251aa|down_6|NC_017731.1_3370641_3371394_-	PRK14115, gpmA, 2,3-diphosphoglycerate-dependent phosphoglycerate mutase	NA|277aa|down_7|NC_017731.1_3371565_3372396_-	pfam02517, Abi, CAAX protease self-immunity	NA|264aa|down_8|NC_017731.1_3374259_3375051_-	PRK10676, PRK10676, DNA-binding transcriptional regulator ModE; Provisional	NA|50aa|down_9|NC_017731.1_3375297_3375447_+	pfam10766, AcrZ, Multidrug efflux pump-associated protein AcrZ
GCF_000259175.1_ASM25917v1	NC_017731	Providencia stuartii MRSN 2154, complete sequence	2	3671895-3671998	2	CRISPRCasFinder	no		cas3,DEDDh,csa3,WYL,DinG,cas1,cas3-cas2,cas8f,cas5f,cas7f,cas6f	Orphan	TGTGATTATTGCCATAGCCGGAAAGGGTAA	30	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,csa3,WYL,DinG,cas1,cas3-cas2,cas8f,cas5f,cas7f,cas6f	NA|60aa|up_8|NC_017731.1_3666159_3666339_+,NA|70aa|up_7|NC_017731.1_3666335_3666545_+,NA|58aa|up_6|NC_017731.1_3666541_3666715_+,NA|65aa|up_5|NC_017731.1_3666714_3666909_+,NA|199aa|up_4|NC_017731.1_3666908_3667505_+,NA|64aa|up_0|NC_017731.1_3671580_3671772_+,NA|58aa|down_0|NC_017731.1_3672281_3672455_+,NA|63aa|down_1|NC_017731.1_3672532_3672721_+,NA|135aa|down_3|NC_017731.1_3675394_3675799_-,NA|54aa|down_4|NC_017731.1_3676158_3676320_+	NA|314aa|up_9|NC_017731.1_3665221_3666163_+	pfam10554, Phage_ASH, Ash protein family	NA|60aa|up_8|NC_017731.1_3666159_3666339_+	NA	NA|70aa|up_7|NC_017731.1_3666335_3666545_+	NA	NA|58aa|up_6|NC_017731.1_3666541_3666715_+	NA	NA|65aa|up_5|NC_017731.1_3666714_3666909_+	NA	NA|199aa|up_4|NC_017731.1_3666908_3667505_+	NA	NA|791aa|up_3|NC_017731.1_3667519_3669892_+	COG3378, COG3378, Phage associated DNA primase [General function prediction only]	NA|246aa|up_2|NC_017731.1_3670271_3671009_+	COG4469, CoiA, Competence protein CoiA-like family, contains a predicted nuclease    domain [General function prediction only]	NA|151aa|up_1|NC_017731.1_3671051_3671504_+	pfam04352, ProQ, ProQ/FINO family	NA|64aa|up_0|NC_017731.1_3671580_3671772_+	NA	NA|58aa|down_0|NC_017731.1_3672281_3672455_+	NA	NA|63aa|down_1|NC_017731.1_3672532_3672721_+	NA	NA|189aa|down_2|NC_017731.1_3673171_3673738_+	pfam01292, Ni_hydr_CYTB, Prokaryotic cytochrome b561	NA|135aa|down_3|NC_017731.1_3675394_3675799_-	NA	NA|54aa|down_4|NC_017731.1_3676158_3676320_+	NA	NA|183aa|down_5|NC_017731.1_3677033_3677582_+	cd01197, INT_FimBE_like, FimB and FimE and related proteins, integrase/recombinases	NA|105aa|down_6|NC_017731.1_3677981_3678296_+	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|77aa|down_7|NC_017731.1_3678306_3678537_+	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|179aa|down_8|NC_017731.1_3678716_3679253_+	COG3539, FimA, P pilus assembly protein, pilin FimA [Cell motility and secretion / Intracellular trafficking and secretion]	NA|179aa|down_9|NC_017731.1_3679320_3679857_+	COG3539, FimA, P pilus assembly protein, pilin FimA [Cell motility and secretion / Intracellular trafficking and secretion]
GCF_000259175.1_ASM25917v1	NC_017731	Providencia stuartii MRSN 2154, complete sequence	3	3839179-3839686	1,3,1	PILER-CR,CRISPRCasFinder,CRT	no	cas1,cas3-cas2,cas8f,cas5f,cas7f,cas6f	cas3,DEDDh,csa3,WYL,DinG,cas1,cas3-cas2,cas8f,cas5f,cas7f,cas6f	Type I-F	GTTCACTGCCGTATAGGCAGCTTAGAAA,GTTCACTGCCGTATAGGCAGCTTAGAAA,GTTCACTGCCGTATAGGCAGCTTAGAAA	28,28,28	0	0	NA	NA	I-F:I-F:I-F	8,8,8	8	TypeI-F	cas3,DEDDh,csa3,WYL,DinG,cas1,cas3-cas2,cas8f,cas5f,cas7f,cas6f	NA,NA	NA|135aa|up_9|NC_017731.1_3829010_3829415_+	PRK05681, flgC, flagellar basal body rod protein FlgC; Reviewed	NA|280aa|up_8|NC_017731.1_3829427_3830267_+	PRK06655, flgD, flagellar hook assembly protein FlgD	NA|407aa|up_7|NC_017731.1_3830297_3831518_+	PRK05682, flgE, flagellar hook protein FlgE; Validated	NA|252aa|up_6|NC_017731.1_3831533_3832289_+	PRK12640, flgF, flagellar basal body rod protein FlgF; Reviewed	NA|261aa|up_5|NC_017731.1_3832308_3833091_+	PRK12693, flgG, flagellar basal body rod protein FlgG; Provisional	NA|244aa|up_4|NC_017731.1_3833216_3833948_+	PRK00249, flgH, flagellar basal body L-ring protein FlgH	NA|368aa|up_3|NC_017731.1_3833989_3835093_+	PRK05303, flgI, flagellar basal body P-ring protein FlgI	NA|327aa|up_2|NC_017731.1_3835092_3836073_+	PRK05684, flgJ, flagellar assembly peptidoglycan hydrolase FlgJ	NA|547aa|up_1|NC_017731.1_3836317_3837958_+	PRK08147, flgK, flagellar hook-associated protein FlgK; Validated	NA|312aa|up_0|NC_017731.1_3837985_3838921_+	PRK08027, flgL, flagellar hook-filament junction protein FlgL	NA|127aa|down_0|NC_017731.1_3839958_3840339_-	pfam05656, DUF805, Protein of unknown function (DUF805)	NA|58aa|down_1|NC_017731.1_3840538_3840712_-	pfam06183, DinI, DinI-like family	NA|50aa|down_2|NC_017731.1_3840784_3840934_+	pfam01527, HTH_Tnp_1, Transposase	NA|98aa|down_3|NC_017731.1_3842937_3843231_+	pfam06836, DUF1240, Protein of unknown function (DUF1240)	cas1|326aa|down_4|NC_017731.1_3844149_3845127_+	TIGR03637, cas1_YPEST, CRISPR-associated endonuclease Cas1, subtype I-F/YPEST	cas3-cas2|1183aa|down_5|NC_017731.1_3845123_3848672_+	TIGR02562, conserved_hypothetical_protein, CRISPR-associated helicase Cas3, subtype I-F/YPEST	cas8f|424aa|down_6|NC_017731.1_3848822_3850094_+	pfam09611, Cas_Csy1, CRISPR-associated protein (Cas_Csy1)	cas5f|316aa|down_7|NC_017731.1_3850090_3851038_+	pfam09614, Cas_Csy2, CRISPR-associated protein (Cas_Csy2)	cas7f|342aa|down_8|NC_017731.1_3851040_3852066_+	pfam09615, Cas_Csy3, CRISPR-associated protein (Cas_Csy3)	cas6f|212aa|down_9|NC_017731.1_3852074_3852710_+	cd09739, Cas6_I-F, CRISPR/Cas system-associated RAMP superfamily protein Cas6f
GCF_000259175.1_ASM25917v1	NC_017731	Providencia stuartii MRSN 2154, complete sequence	4	3852851-3853058	2,4,2	PILER-CR,CRISPRCasFinder,CRT	no	cas1,cas3-cas2,cas8f,cas5f,cas7f,cas6f	cas3,DEDDh,csa3,WYL,DinG,cas1,cas3-cas2,cas8f,cas5f,cas7f,cas6f	Type I-F	GTTCACTGCCGCATAGGCAGCTTAGAAA,GTTCACTGCCGCATAGGCAGCTTAGAAA,GTTCACTGCCGCATAGGCAGCTTAGAAA	28,28,28	0	0	NA	NA	I-F:I-F:I-F	3,3,3	3	TypeI-F	cas3,DEDDh,csa3,WYL,DinG,cas1,cas3-cas2,cas8f,cas5f,cas7f,cas6f	NA,NA	NA|127aa|up_9|NC_017731.1_3839958_3840339_-	pfam05656, DUF805, Protein of unknown function (DUF805)	NA|58aa|up_8|NC_017731.1_3840538_3840712_-	pfam06183, DinI, DinI-like family	NA|50aa|up_7|NC_017731.1_3840784_3840934_+	pfam01527, HTH_Tnp_1, Transposase	NA|98aa|up_6|NC_017731.1_3842937_3843231_+	pfam06836, DUF1240, Protein of unknown function (DUF1240)	cas1|326aa|up_5|NC_017731.1_3844149_3845127_+	TIGR03637, cas1_YPEST, CRISPR-associated endonuclease Cas1, subtype I-F/YPEST	cas3-cas2|1183aa|up_4|NC_017731.1_3845123_3848672_+	TIGR02562, conserved_hypothetical_protein, CRISPR-associated helicase Cas3, subtype I-F/YPEST	cas8f|424aa|up_3|NC_017731.1_3848822_3850094_+	pfam09611, Cas_Csy1, CRISPR-associated protein (Cas_Csy1)	cas5f|316aa|up_2|NC_017731.1_3850090_3851038_+	pfam09614, Cas_Csy2, CRISPR-associated protein (Cas_Csy2)	cas7f|342aa|up_1|NC_017731.1_3851040_3852066_+	pfam09615, Cas_Csy3, CRISPR-associated protein (Cas_Csy3)	cas6f|212aa|up_0|NC_017731.1_3852074_3852710_+	cd09739, Cas6_I-F, CRISPR/Cas system-associated RAMP superfamily protein Cas6f	NA|261aa|down_0|NC_017731.1_3854499_3855282_-	PRK05701, fliR, flagellar type III secretion system protein FliR	NA|90aa|down_1|NC_017731.1_3855284_3855554_-	PRK05700, fliQ, flagellar type III secretion system protein FliQ	NA|248aa|down_2|NC_017731.1_3855563_3856307_-	PRK05699, fliP, flagellar biosynthesis protein FliP; Reviewed	NA|143aa|down_3|NC_017731.1_3856319_3856748_-	PRK11486, PRK11486, flagellar type III secretion system protein FliO	NA|139aa|down_4|NC_017731.1_3856772_3857189_-	PRK07963, fliN, flagellar motor switch protein FliN; Validated	NA|336aa|down_5|NC_017731.1_3857181_3858189_-	PRK06666, fliM, flagellar motor switch protein FliM; Validated	NA|161aa|down_6|NC_017731.1_3858194_3858677_-	PRK07021, fliL, flagellar basal body-associated protein FliL; Reviewed	NA|454aa|down_7|NC_017731.1_3858842_3860204_-	PRK10118, PRK10118, flagellar hook length control protein FliK	NA|148aa|down_8|NC_017731.1_3860204_3860648_-	PRK05689, fliJ, flagella biosynthesis chaperone FliJ	NA|455aa|down_9|NC_017731.1_3860658_3862023_-	PRK07960, fliI, flagellum-specific ATP synthase FliI
GCF_000259175.1_ASM25917v1	NC_017731	Providencia stuartii MRSN 2154, complete sequence	5	3957641-3957788	5	CRISPRCasFinder	no		cas3,DEDDh,csa3,WYL,DinG,cas1,cas3-cas2,cas8f,cas5f,cas7f,cas6f	Orphan	GTGTACTGCCGCATAGGCAGCTTAGAAA	28	0	0	NA	NA	I-F	2	2	Orphan	cas3,DEDDh,csa3,WYL,DinG,cas1,cas3-cas2,cas8f,cas5f,cas7f,cas6f	NA|74aa|up_9|NC_017731.1_3947037_3947259_-,NA|92aa|up_8|NC_017731.1_3947330_3947606_+,NA|113aa|up_3|NC_017731.1_3952696_3953035_-,NA|165aa|down_0|NC_017731.1_3957948_3958443_-,NA|55aa|down_4|NC_017731.1_3961742_3961907_-	NA|74aa|up_9|NC_017731.1_3947037_3947259_-	NA	NA|92aa|up_8|NC_017731.1_3947330_3947606_+	NA	NA|130aa|up_7|NC_017731.1_3947850_3948240_+	cd06587, VOC, vicinal oxygen chelate (VOC) family	NA|92aa|up_6|NC_017731.1_3950292_3950568_-	pfam02517, Abi, CAAX protease self-immunity	NA|89aa|up_5|NC_017731.1_3951654_3951921_+	TIGR01550, Protein_kinase_doc, death-on-curing family protein	NA|46aa|up_4|NC_017731.1_3951927_3952065_+	TIGR01550, Protein_kinase_doc, death-on-curing family protein	NA|113aa|up_3|NC_017731.1_3952696_3953035_-	NA	NA|201aa|up_2|NC_017731.1_3953630_3954233_+	cd03139, GATase1_PfpI_2, Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus	NA|332aa|up_1|NC_017731.1_3955019_3956015_-	COG3469, COG3469, Chitinase [Carbohydrate transport and metabolism]	NA|217aa|up_0|NC_017731.1_3956745_3957396_+	pfam14485, DUF4431, Domain of unknown function (DUF4431)	NA|165aa|down_0|NC_017731.1_3957948_3958443_-	NA	NA|260aa|down_1|NC_017731.1_3958837_3959617_+	CHL00071, tufA, elongation factor Tu	NA|76aa|down_2|NC_017731.1_3960190_3960418_-	pfam13646, HEAT_2, HEAT repeats	NA|211aa|down_3|NC_017731.1_3960806_3961439_-	PRK13211, PRK13211, N-acetylglucosamine-binding protein GbpA	NA|55aa|down_4|NC_017731.1_3961742_3961907_-	NA	NA|181aa|down_5|NC_017731.1_3962243_3962786_-	cd16017, LptA, Lipooligosaccharide Phosphoethanolamine Transferase A (LptA) or Lipid A Phosphoethanolamine Transferase	NA|99aa|down_6|NC_017731.1_3962973_3963270_+	COG1359, COG1359, Uncharacterized conserved protein [Function unknown]	NA|160aa|down_7|NC_017731.1_3964289_3964769_+	pfam11776, RcnB, Nickel/cobalt transporter regulator	NA|119aa|down_8|NC_017731.1_3964894_3965251_-	COG3544, COG3544, Uncharacterized protein conserved in bacteria [Function unknown]	NA|271aa|down_9|NC_017731.1_3966603_3967416_+	pfam01298, TbpB_B_D, C-lobe and N-lobe beta barrels of Tf-binding protein B
GCF_000259175.1_ASM25917v1	NC_017731	Providencia stuartii MRSN 2154, complete sequence	6	3963734-3964061	3,6,3	PILER-CR,CRISPRCasFinder,CRT	no		cas3,DEDDh,csa3,WYL,DinG,cas1,cas3-cas2,cas8f,cas5f,cas7f,cas6f	Orphan	GTTCACTGCCGTATAGGCAGCTTAGAAA,GTTCACTGCCGTATAGGCAGCTTAGAAA,GTTCACTGCCGTATAGGCAGCTTAGAAA	28,28,28	0	0	NA	NA	I-F:I-F:I-F	4,5,5	5	Orphan	cas3,DEDDh,csa3,WYL,DinG,cas1,cas3-cas2,cas8f,cas5f,cas7f,cas6f	NA|165aa|up_6|NC_017731.1_3957948_3958443_-,NA|55aa|up_2|NC_017731.1_3961742_3961907_-,NA|106aa|down_5|NC_017731.1_3971962_3972280_+,NA|144aa|down_7|NC_017731.1_3972735_3973167_-,NA|126aa|down_8|NC_017731.1_3973795_3974173_+	NA|201aa|up_9|NC_017731.1_3953630_3954233_+	cd03139, GATase1_PfpI_2, Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus	NA|332aa|up_8|NC_017731.1_3955019_3956015_-	COG3469, COG3469, Chitinase [Carbohydrate transport and metabolism]	NA|217aa|up_7|NC_017731.1_3956745_3957396_+	pfam14485, DUF4431, Domain of unknown function (DUF4431)	NA|165aa|up_6|NC_017731.1_3957948_3958443_-	NA	NA|260aa|up_5|NC_017731.1_3958837_3959617_+	CHL00071, tufA, elongation factor Tu	NA|76aa|up_4|NC_017731.1_3960190_3960418_-	pfam13646, HEAT_2, HEAT repeats	NA|211aa|up_3|NC_017731.1_3960806_3961439_-	PRK13211, PRK13211, N-acetylglucosamine-binding protein GbpA	NA|55aa|up_2|NC_017731.1_3961742_3961907_-	NA	NA|181aa|up_1|NC_017731.1_3962243_3962786_-	cd16017, LptA, Lipooligosaccharide Phosphoethanolamine Transferase A (LptA) or Lipid A Phosphoethanolamine Transferase	NA|99aa|up_0|NC_017731.1_3962973_3963270_+	COG1359, COG1359, Uncharacterized conserved protein [Function unknown]	NA|160aa|down_0|NC_017731.1_3964289_3964769_+	pfam11776, RcnB, Nickel/cobalt transporter regulator	NA|119aa|down_1|NC_017731.1_3964894_3965251_-	COG3544, COG3544, Uncharacterized protein conserved in bacteria [Function unknown]	NA|271aa|down_2|NC_017731.1_3966603_3967416_+	pfam01298, TbpB_B_D, C-lobe and N-lobe beta barrels of Tf-binding protein B	NA|487aa|down_3|NC_017731.1_3967436_3968897_+	pfam04575, DUF560, Protein of unknown function (DUF560)	NA|1000aa|down_4|NC_017731.1_3968914_3971914_+	TIGR01785, Heme/hemopexin_utilization_protein_C, TonB-dependent heme/hemoglobin receptor family protein	NA|106aa|down_5|NC_017731.1_3971962_3972280_+	NA	NA|106aa|down_6|NC_017731.1_3972398_3972716_+	COG0810, TonB, Periplasmic protein TonB, links inner and outer membranes [Cell envelope biogenesis, outer membrane]	NA|144aa|down_7|NC_017731.1_3972735_3973167_-	NA	NA|126aa|down_8|NC_017731.1_3973795_3974173_+	NA	NA|548aa|down_9|NC_017731.1_3974190_3975834_-	PRK07064, PRK07064, thiamine pyrophosphate-binding protein
