The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NC_015717	Hyphomicrobium sp. MC1, complete genome	4757528	1868592	1876445	4757528		Pneumococcus_phage(16.67%)	12	NA	NA
WP_013947584.1|1868592_1869054_-	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	E7DN65	Pneumococcus_phage	50.4	3.9e-26
WP_013947585.1|1869060_1869447_-	6-carboxytetrahydropterin synthase	NA	NA	NA	NA	NA
WP_013947586.1|1869533_1870166_-	7-carboxy-7-deazaguanine synthase	NA	A5A3S6	Burkholderia_phage	34.3	6.9e-13
WP_013947587.1|1870230_1870938_+	queuosine precursor transporter	NA	A0A2H4J2N7	uncultured_Caudovirales_phage	32.0	1.5e-13
WP_029670963.1|1870965_1871439_+	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_013947589.1|1871619_1871865_-	hypothetical protein	NA	NA	NA	NA	NA
WP_013947590.1|1871843_1872551_-	7-cyano-7-deazaguanine synthase QueC	NA	A0A2I2L6M4	Escherichia_phage	45.9	3.0e-49
WP_013947591.1|1872560_1872920_-	GFA family protein	NA	NA	NA	NA	NA
WP_013947592.1|1873074_1874361_+	phosphopyruvate hydratase	NA	W6LP63	Streptococcus_phage	62.8	4.0e-145
WP_013947593.1|1874514_1874829_+	hypothetical protein	NA	NA	NA	NA	NA
WP_013947594.1|1874937_1875432_+	hypothetical protein	NA	NA	NA	NA	NA
WP_013947595.1|1875452_1876445_+	SDR family oxidoreductase	NA	F2NZ40	Diadromus_pulchellus_ascovirus	39.9	3.3e-46
>prophage 2
NC_015717	Hyphomicrobium sp. MC1, complete genome	4757528	1990688	2049303	4757528	tail,protease,portal,capsid,head,integrase,terminase	Azospirillum_phage(13.33%)	67	2012224:2012241	2037449:2037466
WP_013947728.1|1990688_1991411_-|protease	rhomboid family intramembrane serine protease	protease	NA	NA	NA	NA
WP_013947729.1|1991653_1992295_+	PAS domain-containing protein	NA	NA	NA	NA	NA
WP_013947730.1|1992466_1993096_+	PilZ domain-containing protein	NA	NA	NA	NA	NA
WP_013947731.1|1993255_1993936_+	transglutaminase-like cysteine peptidase	NA	NA	NA	NA	NA
WP_013947732.1|1994072_1994603_-	gamma carbonic anhydrase family protein	NA	NA	NA	NA	NA
WP_013947733.1|1994617_1994833_-	DUF3126 family protein	NA	NA	NA	NA	NA
WP_013947734.1|1994857_1995685_-	serine O-acetyltransferase	NA	NA	NA	NA	NA
WP_013947735.1|1995886_1996690_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_024275882.1|1996698_1997805_+	polysaccharide deacetylase family protein	NA	NA	NA	NA	NA
WP_013947737.1|1997806_1998277_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_024275883.1|1998971_2001668_-	methionine synthase	NA	NA	NA	NA	NA
WP_157135422.1|2001717_2002410_-	methyltransferase domain-containing protein	NA	NA	NA	NA	NA
WP_024275884.1|2002414_2003476_-	homocysteine S-methyltransferase family protein	NA	A0A140XBC7	Dickeya_phage	54.8	9.4e-15
WP_013947741.1|2003502_2004417_-	methylenetetrahydrofolate reductase [NAD(P)H]	NA	NA	NA	NA	NA
WP_013947742.1|2004416_2005448_-	metalloregulator ArsR/SmtB family transcription factor	NA	NA	NA	NA	NA
WP_024275885.1|2005585_2006206_+	hypothetical protein	NA	NA	NA	NA	NA
WP_155831224.1|2006332_2006935_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_013947746.1|2007176_2007815_+	PRC-barrel domain-containing protein	NA	NA	NA	NA	NA
WP_013947747.1|2007879_2009538_-	energy-dependent translational throttle protein EttA	NA	A0A2K9L3Z8	Tupanvirus	28.2	2.2e-42
WP_013947749.1|2009691_2010426_+	DUF1003 domain-containing protein	NA	NA	NA	NA	NA
WP_013947750.1|2010535_2011285_-|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_013947751.1|2011307_2012357_-	mitochondrial fission ELM1 family protein	NA	NA	NA	NA	NA
2012224:2012241	attL	AGGCCGAGCGCTTCGACG	NA	NA	NA	NA
WP_013947752.1|2012472_2012961_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_013947753.1|2012988_2013552_+	hypothetical protein	NA	NA	NA	NA	NA
WP_013947754.1|2013576_2014065_-	transcription elongation factor GreA	NA	NA	NA	NA	NA
WP_013947755.1|2014190_2017466_-	carbamoyl-phosphate synthase large subunit	NA	NA	NA	NA	NA
WP_013947756.1|2017618_2018842_-	MFS transporter	NA	NA	NA	NA	NA
WP_013947757.1|2018962_2019664_-	hypothetical protein	NA	NA	NA	NA	NA
WP_013947758.1|2019697_2020327_-	hypothetical protein	NA	NA	NA	NA	NA
WP_013947759.1|2020442_2021480_-	ChaN family lipoprotein	NA	NA	NA	NA	NA
WP_013947760.1|2021503_2022703_-	glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit	NA	R4TGJ8	Halovirus	33.3	2.5e-40
WP_013947761.1|2022877_2023315_+	GatB/YqeY domain-containing protein	NA	A0A292GL36	Xanthomonas_phage	45.4	4.3e-22
WP_013947762.1|2023547_2025542_+	DNA primase	NA	A0A0K1LMQ9	Caulobacter_phage	37.6	4.1e-112
WP_013947763.1|2025653_2027633_+	RNA polymerase sigma factor RpoD	NA	A0A2I7SAT0	Vibrio_phage	34.2	2.8e-36
WP_035576171.1|2027963_2028428_+	VOC family protein	NA	NA	NA	NA	NA
WP_013947765.1|2028438_2028897_-	transcription elongation factor GreA	NA	NA	NA	NA	NA
WP_013947766.1|2028934_2029354_+	YjbQ family protein	NA	NA	NA	NA	NA
WP_013947767.1|2029441_2030017_+	carboxymuconolactone decarboxylase family protein	NA	NA	NA	NA	NA
WP_013947768.1|2030023_2030644_-	hypothetical protein	NA	A0A1D8KJX6	Synechococcus_phage	29.6	1.3e-11
WP_013947769.1|2030769_2031204_+	nuclear transport factor 2 family protein	NA	NA	NA	NA	NA
WP_013947770.1|2031218_2031827_+	hypothetical protein	NA	NA	NA	NA	NA
WP_013947771.1|2031938_2032847_+	carbon-nitrogen hydrolase family protein	NA	NA	NA	NA	NA
WP_013947772.1|2032938_2033667_-	SIMPL domain-containing protein	NA	NA	NA	NA	NA
WP_013947773.1|2033879_2034647_+	hypothetical protein	NA	NA	NA	NA	NA
WP_013947775.1|2034911_2035952_-|integrase	tyrosine-type recombinase/integrase	integrase	NA	NA	NA	NA
WP_041300000.1|2035926_2036139_-	hypothetical protein	NA	NA	NA	NA	NA
WP_157135423.1|2036128_2036515_-	hypothetical protein	NA	NA	NA	NA	NA
WP_013947779.1|2036842_2037058_-	hypothetical protein	NA	NA	NA	NA	NA
WP_013947780.1|2037163_2037505_+	hypothetical protein	NA	NA	NA	NA	NA
2037449:2037466	attR	AGGCCGAGCGCTTCGACG	NA	NA	NA	NA
WP_013947781.1|2037678_2038458_+	hypothetical protein	NA	NA	NA	NA	NA
WP_013947782.1|2038792_2039002_-	hypothetical protein	NA	NA	NA	NA	NA
WP_013947783.1|2039208_2040444_+|portal	phage portal protein	portal	I3ULZ7	Rhodobacter_phage	31.1	1.9e-35
WP_041300005.1|2040433_2040775_+	gene transfer agent family protein	NA	NA	NA	NA	NA
WP_013947785.1|2040764_2041397_+|head,protease	HK97 family phage prohead protease	head,protease	B0VK32	Azospirillum_phage	38.6	4.1e-26
WP_013947786.1|2041401_2042622_+|capsid	phage major capsid protein	capsid	B0VK33	Azospirillum_phage	32.4	8.2e-39
WP_013947787.1|2042639_2043026_+	hypothetical protein	NA	A0A0F7L2Y9	uncultured_marine_virus	33.6	3.4e-07
WP_013947788.1|2043050_2043809_+	putative Ig domain-containing protein	NA	A0A1W6JQC9	Corynebacterium_phage	45.8	7.5e-06
WP_013947789.1|2043818_2044397_+	hypothetical protein	NA	NA	NA	NA	NA
WP_013947790.1|2044393_2044762_+	hypothetical protein	NA	NA	NA	NA	NA
WP_050976776.1|2044766_2045015_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_013947792.1|2045005_2045350_+	HNH endonuclease	NA	Q38456	Bacillus_phage	43.8	5.2e-15
WP_013947794.1|2045697_2046222_+	hypothetical protein	NA	NA	NA	NA	NA
WP_013947795.1|2046218_2046536_+|head,tail	phage gp6-like head-tail connector protein	head,tail	NA	NA	NA	NA
WP_013947796.1|2046535_2046937_+	HK97 gp10 family phage protein	NA	B4UTQ0	Rhizobium_phage	39.1	1.9e-13
WP_013947797.1|2046929_2047343_+	DUF3168 domain-containing protein	NA	NA	NA	NA	NA
WP_013947798.1|2047339_2047660_+|head,tail	head-tail adaptor protein	head,tail	NA	NA	NA	NA
WP_013947799.1|2047656_2049303_+|terminase	terminase large subunit	terminase	A0A1P8DTK0	Proteus_phage	29.3	1.5e-56
>prophage 3
NC_015717	Hyphomicrobium sp. MC1, complete genome	4757528	2191806	2263233	4757528	tail,protease,capsid,head,tRNA	Bacillus_phage(15.38%)	62	NA	NA
WP_013947941.1|2191806_2192505_+|protease	TIGR02281 family clan AA aspartic protease	protease	NA	NA	NA	NA
WP_013947942.1|2192553_2193123_+|protease	TIGR02281 family clan AA aspartic protease	protease	NA	NA	NA	NA
WP_013947943.1|2193231_2194737_+	phosphomannomutase/phosphoglucomutase	NA	A0A127AWJ1	Bacillus_phage	25.4	1.2e-26
WP_013947944.1|2194837_2195665_-	sulfite exporter TauE/SafE family protein	NA	NA	NA	NA	NA
WP_013947945.1|2195674_2196679_-|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	tRNA	NA	NA	NA	NA
WP_024275904.1|2196906_2197740_+	LssY C-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_155831226.1|2197818_2198517_-	hypothetical protein	NA	NA	NA	NA	NA
WP_013947949.1|2198833_2199532_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_013947950.1|2199556_2201467_-	hypothetical protein	NA	NA	NA	NA	NA
WP_013947952.1|2201916_2202372_+	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_013947953.1|2202501_2203512_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_029670979.1|2203698_2204922_+	extensin family protein	NA	NA	NA	NA	NA
WP_013947955.1|2204943_2207451_-	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_013947956.1|2207553_2210724_-	multidrug efflux RND transporter permease subunit	NA	S5VTK5	Leptospira_phage	22.4	1.1e-63
WP_035575800.1|2210739_2211945_-	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_013947958.1|2212188_2212827_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_013947959.1|2213214_2214279_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_013947960.1|2214324_2215143_+	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_013947961.1|2215139_2215976_+	ABC transporter ATP-binding protein	NA	A0A140XAK6	Dickeya_phage	49.5	2.7e-17
WP_013947962.1|2216079_2216811_+	urea carboxylase-associated family protein	NA	NA	NA	NA	NA
WP_013947963.1|2216810_2217458_+	urea carboxylase-associated family protein	NA	NA	NA	NA	NA
WP_013947964.1|2217463_2221084_+	urea carboxylase	NA	NA	NA	NA	NA
WP_081740973.1|2221005_2222865_+	allophanate hydrolase	NA	NA	NA	NA	NA
WP_024275909.1|2223047_2223869_+	quinoprotein dehydrogenase-associated SoxYZ-like carrier	NA	NA	NA	NA	NA
WP_013947968.1|2223894_2225187_+	sulfite dehydrogenase	NA	NA	NA	NA	NA
WP_013947969.1|2225173_2225722_+	c-type cytochrome	NA	NA	NA	NA	NA
WP_013947970.1|2225731_2226562_-	hypothetical protein	NA	NA	NA	NA	NA
WP_013947971.1|2226776_2227463_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_013947972.1|2227698_2228913_+	saccharopine dehydrogenase family protein	NA	NA	NA	NA	NA
WP_013947973.1|2228912_2229350_+	hypothetical protein	NA	NA	NA	NA	NA
WP_024275911.1|2229407_2230553_+	carboxynorspermidine decarboxylase	NA	NA	NA	NA	NA
WP_013947975.1|2230629_2233287_+	aminopeptidase N	NA	NA	NA	NA	NA
WP_013947977.1|2233492_2234539_+	HAMP domain-containing histidine kinase	NA	NA	NA	NA	NA
WP_013947978.1|2234582_2235098_-	periplasmic heavy metal sensor	NA	NA	NA	NA	NA
WP_013947979.1|2235094_2235607_-	hypothetical protein	NA	NA	NA	NA	NA
WP_013947980.1|2235627_2236260_-	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA	NA
WP_024275912.1|2236380_2239356_-	bifunctional [glutamine synthetase] adenylyltransferase/[glutamine synthetase]-adenylyl-L-tyrosine phosphorylase	NA	NA	NA	NA	NA
WP_013947982.1|2239342_2240788_-	HAMP domain-containing histidine kinase	NA	NA	NA	NA	NA
WP_029670984.1|2240771_2241452_-	response regulator transcription factor	NA	W8CYM9	Bacillus_phage	34.1	2.5e-29
WP_013947984.1|2241571_2243155_-	Do family serine endopeptidase	NA	A0A1B1IT49	uncultured_Mediterranean_phage	25.9	1.7e-20
WP_013947985.1|2243284_2243764_-	cytochrome c-type biogenesis protein CcmH	NA	NA	NA	NA	NA
WP_013947986.1|2243763_2245743_-	heme lyase CcmF/NrfE family subunit	NA	NA	NA	NA	NA
WP_013947987.1|2245755_2246226_-	cytochrome c maturation protein CcmE	NA	NA	NA	NA	NA
WP_013947988.1|2246255_2247428_-	c-type cytochrome biogenesis protein CcmI	NA	NA	NA	NA	NA
WP_024275914.1|2247565_2248045_-	glycine zipper 2TM domain-containing protein	NA	NA	NA	NA	NA
WP_013947990.1|2248217_2249597_-	two-component sensor histidine kinase	NA	NA	NA	NA	NA
WP_013947991.1|2249586_2250258_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_013947992.1|2250339_2250630_-	hypothetical protein	NA	NA	NA	NA	NA
WP_013947993.1|2250720_2252028_-	TIGR02594 family protein	NA	R9TRQ2	Rhizobium_phage	39.3	2.1e-16
WP_013947994.1|2252181_2256132_-|tail	glycoside hydrolase/phage tail family protein	tail	A0A0K1LLC1	Rhodobacter_phage	41.1	6.2e-253
WP_013947995.1|2256204_2256642_-	C40 family peptidase	NA	F4YXU4	Roseobacter_phage	46.8	5.0e-31
WP_013947996.1|2256725_2257586_-	DUF2163 domain-containing protein	NA	A0A0B5A5B8	Paracoccus_phage	47.7	5.8e-71
WP_013947997.1|2257582_2258221_-	DUF2460 domain-containing protein	NA	A0A0B5A2K3	Paracoccus_phage	49.3	7.3e-55
WP_013947998.1|2258248_2258839_-|tail	phage tail tape measure protein	tail	A0A1B2AQ26	Escherichia_phage	34.1	1.3e-05
WP_013947999.1|2258825_2259014_-|tail	phage tail assembly chaperone	tail	NA	NA	NA	NA
WP_013948000.1|2259013_2259391_-	gene transfer agent family protein	NA	NA	NA	NA	NA
WP_013948001.1|2259482_2259899_-|tail	phage major tail protein, TP901-1 family	tail	I3UM07	Rhodobacter_phage	40.3	2.9e-20
WP_013948002.1|2260023_2260431_-	DUF3168 domain-containing protein	NA	NA	NA	NA	NA
WP_157135432.1|2260430_2260601_-	hypothetical protein	NA	NA	NA	NA	NA
WP_013948004.1|2260597_2260930_-|head	phage head closure protein	head	NA	NA	NA	NA
WP_013948005.1|2260926_2261502_-|head,tail	phage head-tail connector protein	head,tail	NA	NA	NA	NA
WP_013948006.1|2261991_2263233_-|capsid	phage major capsid protein	capsid	A0A2D1GNH4	Pseudomonas_phage	46.2	6.3e-79
>prophage 4
NC_015717	Hyphomicrobium sp. MC1, complete genome	4757528	2524445	2531481	4757528	tRNA	uncultured_Mediterranean_phage(100.0%)	10	NA	NA
WP_013948296.1|2524445_2525210_-	5'/3'-nucleotidase SurE	NA	A0A1B1ITZ2	uncultured_Mediterranean_phage	39.0	4.7e-40
WP_013948297.1|2525213_2525459_-	hypothetical protein	NA	NA	NA	NA	NA
WP_013948298.1|2525477_2526758_-|tRNA	serine--tRNA ligase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	48.3	2.2e-106
WP_013948299.1|2526874_2527024_-	hypothetical protein	NA	NA	NA	NA	NA
WP_013948300.1|2527244_2527400_-	hypothetical protein	NA	NA	NA	NA	NA
WP_013948302.1|2528013_2528838_-	twin-arginine translocase subunit TatC	NA	A0A1B1IVR7	uncultured_Mediterranean_phage	45.2	1.9e-47
WP_013948303.1|2528842_2529286_-	twin-arginine translocase subunit TatB	NA	NA	NA	NA	NA
WP_013948304.1|2529333_2529540_-	twin-arginine translocase TatA/TatE family subunit	NA	A0A1B1IVR9	uncultured_Mediterranean_phage	60.0	1.2e-06
WP_013948305.1|2529759_2530614_-	SMC-Scp complex subunit ScpB	NA	A0A1B1IVT7	uncultured_Mediterranean_phage	49.4	4.1e-45
WP_155831346.1|2530653_2531481_-	segregation/condensation protein A	NA	A0A1B1IVW1	uncultured_Mediterranean_phage	34.0	9.5e-31
