The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NC_015580	Novosphingobium sp. PP1Y, complete genome	3911486	328728	403875	3911486	portal,integrase,protease,plate,capsid,tail,terminase,head	Burkholderia_phage(20.0%)	80	349987:350006	388183:388202
WP_148275072.1|328728_329904_+|integrase	tyrosine-type recombinase/integrase	integrase	NA	NA	NA	NA
WP_041559195.1|329900_330815_+|integrase	tyrosine-type recombinase/integrase	integrase	NA	NA	NA	NA
WP_013831730.1|330811_331816_+|integrase	tyrosine-type recombinase/integrase	integrase	A0A2L1IV36	Escherichia_phage	35.0	1.2e-11
WP_013831731.1|331877_333743_+	strawberry notch C-terminal domain-containing protein	NA	A0A076FMQ0	Aureococcus_anophage	30.8	4.7e-17
WP_013831732.1|333754_334798_+	toprim domain-containing protein	NA	NA	NA	NA	NA
WP_013831733.1|335116_336061_+	DUF2493 domain-containing protein	NA	NA	NA	NA	NA
WP_148274917.1|336292_336982_-	cyclic nucleotide-binding domain-containing protein	NA	NA	NA	NA	NA
WP_041558667.1|337024_337936_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_013831736.1|337932_339498_-	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_013831737.1|339841_340525_-	RES family NAD+ phosphorylase	NA	NA	NA	NA	NA
WP_013831738.1|340528_340927_-	DUF2384 domain-containing protein	NA	NA	NA	NA	NA
WP_013831739.1|341365_341686_+	DUF736 family protein	NA	NA	NA	NA	NA
WP_013831740.1|341937_342345_+	DUF2513 domain-containing protein	NA	NA	NA	NA	NA
WP_013831741.1|342385_343174_-	HNH endonuclease	NA	NA	NA	NA	NA
WP_013831742.1|343190_345692_-	S8 family peptidase	NA	NA	NA	NA	NA
WP_013831743.1|345697_346693_-	ATP-binding protein	NA	R4TQL5	Phaeocystis_globosa_virus	30.4	6.3e-13
WP_013831744.1|346812_347295_-	type II toxin-antitoxin system MqsA family antitoxin	NA	NA	NA	NA	NA
WP_013831745.1|347366_348647_-|integrase	site-specific integrase	integrase	NA	NA	NA	NA
349987:350006	attL	AAGTGGATGCCCCGCGAGGA	NA	NA	NA	NA
WP_013831747.1|350091_350301_-	AlpA family phage regulatory protein	NA	NA	NA	NA	NA
WP_148274918.1|350456_350693_-	hypothetical protein	NA	NA	NA	NA	NA
WP_013831749.1|350889_351153_-	DUF2312 domain-containing protein	NA	B0VK10	Azospirillum_phage	60.6	2.7e-16
WP_148274919.1|351173_351407_-	hypothetical protein	NA	NA	NA	NA	NA
WP_148274920.1|351403_351613_-	hypothetical protein	NA	NA	NA	NA	NA
WP_041558672.1|351723_352032_-	ogr/Delta-like zinc finger family protein	NA	NA	NA	NA	NA
WP_051009998.1|352031_352523_-	hypothetical protein	NA	NA	NA	NA	NA
WP_051009999.1|352968_353442_+	hypothetical protein	NA	NA	NA	NA	NA
WP_158511839.1|353897_354302_-	hypothetical protein	NA	NA	NA	NA	NA
WP_041558675.1|354532_354946_-	hypothetical protein	NA	NA	NA	NA	NA
WP_041558676.1|355818_356073_-	hypothetical protein	NA	NA	NA	NA	NA
WP_013831757.1|356437_357460_-	phage late control protein	NA	E5FFG3	Burkholderia_phage	44.2	1.6e-72
WP_041559200.1|357456_357870_-|tail	phage tail protein	tail	Q9ZXJ9	Pseudomonas_virus	46.0	3.4e-29
WP_013831759.1|357883_360397_-|tail	phage tail tape measure protein	tail	V9IQL1	Stenotrophomonas_phage	50.5	8.0e-89
WP_041558677.1|360396_360528_-|tail	GpE family phage tail protein	tail	A0A0F7LCR6	Escherichia_phage	64.7	1.4e-05
WP_013831760.1|360536_360842_-|tail	phage tail assembly protein	tail	Q9ZXK2	Pseudomonas_virus	55.1	9.0e-19
WP_013831761.1|360904_361417_-|tail	phage major tail tube protein	tail	V9IQX1	Stenotrophomonas_phage	54.2	2.9e-46
WP_013831762.1|361460_362633_-|tail	phage tail sheath subtilisin-like domain-containing protein	tail	F1BUU3	Erwinia_phage	58.7	6.3e-121
WP_013831763.1|362649_363000_-	GPW/gp25 family protein	NA	V9IQW0	Stenotrophomonas_phage	53.5	9.6e-25
WP_013831764.1|362999_363536_-|plate	phage baseplate assembly protein V	plate	V9IQH1	Stenotrophomonas_phage	58.7	1.0e-25
WP_013831765.1|363618_364824_-	hypothetical protein	NA	NA	NA	NA	NA
WP_013831767.1|364928_365735_-	DNA adenine methylase	NA	A0A291AUP9	Sinorhizobium_phage	58.8	3.5e-86
WP_041558678.1|365911_366169_-	hypothetical protein	NA	NA	NA	NA	NA
WP_013831768.1|366182_366566_-|tail	tail protein	tail	A0A291LAV4	Bordetella_phage	39.4	2.2e-14
WP_013831770.1|369115_369670_-|tail	phage tail protein I	tail	V9IQK7	Stenotrophomonas_phage	50.8	1.2e-45
WP_013831771.1|369666_370560_-|plate	baseplate J/gp47 family protein	plate	R4JDM0	Burkholderia_phage	52.7	2.9e-73
WP_013831772.1|370884_373245_-	SIR2 family protein	NA	NA	NA	NA	NA
WP_013831773.1|373533_374205_-	phage virion morphogenesis protein	NA	A0A2H4J927	uncultured_Caudovirales_phage	51.6	2.4e-08
WP_013831774.1|374201_374720_-|tail	phage tail protein	tail	E5FFH7	Burkholderia_phage	39.8	4.0e-19
WP_041558679.1|374703_374901_-	hypothetical protein	NA	NA	NA	NA	NA
WP_013831775.1|374845_375241_-	hypothetical protein	NA	NA	NA	NA	NA
WP_041558680.1|375237_375690_-	hypothetical protein	NA	A0A1B1IRA1	uncultured_Mediterranean_phage	49.7	3.3e-33
WP_013831776.1|375694_376027_-	hypothetical protein	NA	NA	NA	NA	NA
WP_013831777.1|376031_376256_-|tail	tail protein X	tail	A0A2H4J946	uncultured_Caudovirales_phage	44.1	5.8e-07
WP_013831778.1|376255_376738_-|head	head completion/stabilization protein	head	A4PE32	Ralstonia_virus	42.8	2.0e-25
WP_013831779.1|376858_377653_-|terminase	terminase	terminase	A0A077K804	Ralstonia_phage	42.3	9.2e-31
WP_013831780.1|377707_378799_-|capsid	phage major capsid protein, P2 family	capsid	Q9ZXM3	Pseudomonas_virus	49.7	4.9e-83
WP_013831781.1|378850_379660_-|capsid	GPO family capsid scaffolding protein	capsid	K4PAW2	Burkholderia_phage	44.5	2.6e-49
WP_013831782.1|379835_381689_+|terminase	terminase	terminase	A4JWU9	Burkholderia_virus	54.4	2.3e-178
WP_041558681.1|381688_382738_+|portal	phage portal protein	portal	E5E3X1	Burkholderia_phage	58.6	2.2e-104
WP_013831784.1|382915_383695_-	hypothetical protein	NA	NA	NA	NA	NA
WP_013831785.1|383687_385025_-	DNA cytosine methyltransferase	NA	A0A191SAU1	Nostoc_phage	31.7	1.1e-39
WP_013831786.1|385071_385509_-	DNA mismatch endonuclease Vsr	NA	I6NSG0	Burkholderia_phage	47.2	4.1e-33
WP_041558682.1|385935_386733_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_148274922.1|386686_388036_-|integrase	integrase arm-type DNA-binding domain-containing protein	integrase	Q8W6M6	Sinorhizobium_phage	43.0	4.5e-78
WP_158511840.1|388426_388573_+	hypothetical protein	NA	NA	NA	NA	NA
388183:388202	attR	AAGTGGATGCCCCGCGAGGA	NA	NA	NA	NA
WP_013831789.1|388606_389410_-	crotonase/enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_013831790.1|389714_391028_+	Ppx/GppA family phosphatase	NA	NA	NA	NA	NA
WP_007012491.1|391024_391684_+	RlmE family RNA methyltransferase	NA	NA	NA	NA	NA
WP_013831791.1|391882_392515_-	cytochrome c family protein	NA	NA	NA	NA	NA
WP_013831792.1|392634_393528_+	prephenate dehydratase	NA	NA	NA	NA	NA
WP_051010106.1|393663_394332_+	hypothetical protein	NA	NA	NA	NA	NA
WP_013831794.1|394328_395666_+	hypothetical protein	NA	NA	NA	NA	NA
WP_013831795.1|395662_396637_+	MoxR family ATPase	NA	NA	NA	NA	NA
WP_013831796.1|396641_397970_+	DUF58 domain-containing protein	NA	NA	NA	NA	NA
WP_013831797.1|397966_399007_+	stage II sporulation protein M	NA	NA	NA	NA	NA
WP_041558684.1|399003_399927_+	RDD family protein	NA	NA	NA	NA	NA
WP_013831799.1|399926_400394_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_041558685.1|400489_401008_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_013831801.1|401015_402026_-	zinc transporter ZntB	NA	NA	NA	NA	NA
WP_041558686.1|402143_403268_+	flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase	NA	NA	NA	NA	NA
WP_013831803.1|403338_403875_+|protease	TIGR02281 family clan AA aspartic protease	protease	NA	NA	NA	NA
>prophage 2
NC_015580	Novosphingobium sp. PP1Y, complete genome	3911486	2429137	2448439	3911486	integrase,transposase	Stx2-converting_phage(25.0%)	16	2443643:2443668	2450351:2450376
WP_041559390.1|2429137_2429593_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_041558956.1|2429589_2429943_+	IS66 family insertion sequence element accessory protein TnpB	NA	NA	NA	NA	NA
WP_041558957.1|2430013_2431645_+|transposase	IS66 family transposase	transposase	A0A0P0ZEB3	Stx2-converting_phage	49.2	6.5e-116
WP_013833413.1|2432219_2433581_-	NAD(P)-binding protein	NA	NA	NA	NA	NA
WP_013833414.1|2433846_2434050_+	hypothetical protein	NA	NA	NA	NA	NA
WP_013833415.1|2434333_2436865_+	plasma-membrane proton-efflux P-type ATPase	NA	M1IAU8	Acanthocystis_turfacea_Chlorella_virus	24.6	1.3e-51
WP_148274999.1|2438305_2439124_-	cyclic nucleotide-binding domain-containing protein	NA	NA	NA	NA	NA
WP_083835219.1|2439782_2439971_+	DUF2933 domain-containing protein	NA	NA	NA	NA	NA
WP_013833419.1|2440026_2440323_+	hypothetical protein	NA	NA	NA	NA	NA
WP_013833420.1|2440745_2441789_+	type II glyceraldehyde-3-phosphate dehydrogenase	NA	NA	NA	NA	NA
WP_041558958.1|2441938_2442268_-	hypothetical protein	NA	NA	NA	NA	NA
WP_013833422.1|2442557_2443340_-	slipin family protein	NA	NA	NA	NA	NA
2443643:2443668	attL	GTGCAAGCTTGGGGTCGTTGAAAAAG	NA	NA	NA	NA
WP_013833423.1|2443936_2444713_-|transposase	IS110 family transposase	transposase	A0A1S7J231	Thermus_phage	30.9	1.0e-10
WP_013833425.1|2444844_2446074_+|integrase	tyrosine-type recombinase/integrase	integrase	NA	NA	NA	NA
WP_013833426.1|2446070_2447438_+|integrase	tyrosine-type recombinase/integrase	integrase	S5MNZ2	Brevibacillus_phage	28.6	8.7e-05
WP_013833427.1|2447434_2448439_+|integrase	site-specific integrase	integrase	NA	NA	NA	NA
2450351:2450376	attR	CTTTTTCAACGACCCCAAGCTTGCAC	NA	NA	NA	NA
>prophage 3
NC_015580	Novosphingobium sp. PP1Y, complete genome	3911486	3718810	3740509	3911486	portal,tRNA,protease,capsid,tail,head	Feldmannia_irregularis_virus(10.0%)	32	NA	NA
WP_013834406.1|3718810_3719221_+|tRNA	aminoacyl-tRNA hydrolase	tRNA	NA	NA	NA	NA
WP_041559141.1|3719236_3719449_-	hypothetical protein	NA	NA	NA	NA	NA
WP_038575945.1|3719457_3719847_-	DUF4112 domain-containing protein	NA	NA	NA	NA	NA
WP_013834408.1|3719915_3721454_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_007012877.1|3721570_3721936_-	PilZ domain-containing protein	NA	NA	NA	NA	NA
WP_013834409.1|3722084_3722543_-	RNA polymerase-binding protein DksA	NA	NA	NA	NA	NA
WP_007012875.1|3722840_3723179_+	sel1 repeat family protein	NA	NA	NA	NA	NA
WP_013834410.1|3723210_3724347_-	N-acetyltransferase	NA	NA	NA	NA	NA
WP_013834411.1|3724343_3725141_-	glycerophosphoryl diester phosphodiesterase	NA	NA	NA	NA	NA
WP_013834412.1|3725112_3725577_-	RidA family protein	NA	NA	NA	NA	NA
WP_013834413.1|3725573_3726248_-	hypothetical protein	NA	NA	NA	NA	NA
WP_052117964.1|3726244_3726478_-	DUF3572 domain-containing protein	NA	NA	NA	NA	NA
WP_007012869.1|3726585_3726948_+	response regulator	NA	Q6XM27	Feldmannia_irregularis_virus	30.2	3.5e-06
WP_007012868.1|3727061_3727301_+	acyl carrier protein	NA	NA	NA	NA	NA
WP_041559143.1|3727324_3728560_+	aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme	NA	D2TEZ5	Emiliania_huxleyi_virus	31.1	7.1e-38
WP_013834415.1|3728620_3729178_-	NAD(P)H-dependent oxidoreductase	NA	A0A2P0ZL77	Lactobacillus_phage	38.5	5.3e-17
WP_013834416.1|3729256_3729532_-	usg protein	NA	NA	NA	NA	NA
WP_013834417.1|3729680_3730319_-	DedA family protein	NA	NA	NA	NA	NA
WP_041559144.1|3730505_3731006_+	hypothetical protein	NA	NA	NA	NA	NA
WP_013834418.1|3730992_3732318_+	DNA-packaging protein	NA	A0A1V0DY66	Dinoroseobacter_phage	42.1	9.2e-76
WP_013834419.1|3732342_3733503_+|portal	phage portal protein	portal	W8ECU7	Geobacillus_phage	36.4	1.0e-46
WP_013834420.1|3733502_3733811_+	hypothetical protein	NA	K4I011	Acidithiobacillus_phage	45.3	1.1e-08
WP_013834421.1|3733807_3734206_+|head,protease	HK97 family phage prohead protease	head,protease	A0A0U2BX10	Paracoccus_phage	39.2	1.0e-14
WP_013834422.1|3734263_3735400_+|capsid	phage major capsid protein	capsid	A0A2D1GNH4	Pseudomonas_phage	46.9	2.3e-83
WP_013834423.1|3735460_3736009_+|head,tail	phage head-tail connector protein	head,tail	NA	NA	NA	NA
WP_041559145.1|3736005_3736188_+	hypothetical protein	NA	NA	NA	NA	NA
WP_013834424.1|3736191_3736581_+	DUF3168 domain-containing protein	NA	NA	NA	NA	NA
WP_013834425.1|3736616_3737024_+|tail	phage major tail protein, TP901-1 family	tail	NA	NA	NA	NA
WP_013834426.1|3737020_3737353_+	gene transfer agent family protein	NA	NA	NA	NA	NA
WP_041559146.1|3737349_3737544_+|tail	phage tail assembly chaperone	tail	NA	NA	NA	NA
WP_013834427.1|3737536_3738112_+	hypothetical protein	NA	D6PEW0	uncultured_phage	32.2	1.5e-06
WP_013834428.1|3738178_3740509_+	DUF2460 domain-containing protein	NA	A0A0K1LLZ8	Rhodobacter_phage	42.1	2.6e-33
>prophage 1
NC_015579	Novosphingobium sp. PP1Y plasmid Lpl, complete sequence	192103	0	8661	192103		Emiliania_huxleyi_virus(14.29%)	8	NA	NA
WP_041557974.1|899_2999_+	ParB/RepB/Spo0J family partition protein	NA	G8DH78	Emiliania_huxleyi_virus	31.1	8.1e-34
WP_013831269.1|3100_4153_+	toprim domain-containing protein	NA	A0A0K1Y762	Rhodobacter_phage	31.9	2.1e-06
WP_013831270.1|4470_5394_+	DUF2493 domain-containing protein	NA	B0VK20	Azospirillum_phage	31.9	3.6e-10
WP_039286522.1|5885_6173_-	HigA family addiction module antidote protein	NA	M9MUN2	Rhodococcus_phage	38.6	1.4e-10
WP_013831273.1|6184_6466_-	type II toxin-antitoxin system RelE/ParE family toxin	NA	A0A222YWE2	Escherichia_phage	44.3	9.1e-10
WP_013831274.1|6763_7705_-	Abi family protein	NA	A0A059NT88	Lactococcus_phage	22.7	4.3e-11
WP_013831275.1|8042_8270_+	AbrB/MazE/SpoVT family DNA-binding domain-containing protein	NA	NA	NA	NA	NA
WP_013831276.1|8271_8661_+	type II toxin-antitoxin system death-on-curing family toxin	NA	A0A1B3AYM0	Gordonia_phage	43.4	7.0e-08
>prophage 2
NC_015579	Novosphingobium sp. PP1Y plasmid Lpl, complete sequence	192103	15961	16666	192103		uncultured_Caudovirales_phage(100.0%)	1	NA	NA
WP_013831288.1|15961_16666_+	lytic transglycosylase domain-containing protein	NA	A0A2H4J9N7	uncultured_Caudovirales_phage	38.9	3.4e-13
>prophage 3
NC_015579	Novosphingobium sp. PP1Y plasmid Lpl, complete sequence	192103	21430	22204	192103		Aeromonas_phage(100.0%)	1	NA	NA
WP_013831293.1|21430_22204_+	autoinducer binding domain-containing protein	NA	A0A1I9KF49	Aeromonas_phage	27.9	2.8e-08
>prophage 4
NC_015579	Novosphingobium sp. PP1Y plasmid Lpl, complete sequence	192103	27524	30110	192103		Acinetobacter_phage(100.0%)	1	NA	NA
WP_013831300.1|27524_30110_+	TonB-dependent receptor	NA	A0A0P0I887	Acinetobacter_phage	37.8	5.6e-21
>prophage 5
NC_015579	Novosphingobium sp. PP1Y plasmid Lpl, complete sequence	192103	48079	53041	192103		Wolbachia_phage(33.33%)	3	NA	NA
WP_013831319.1|48079_50143_-	recombinase family protein	NA	A0A1B2LRQ3	Wolbachia_phage	23.6	5.2e-09
WP_013831322.1|51013_52048_+	GDP-mannose 4,6-dehydratase	NA	M1I1J0	Paramecium_bursaria_Chlorella_virus	55.4	3.1e-103
WP_041558003.1|52144_53041_+	GDP-mannose 4,6-dehydratase	NA	A0A222YY99	Synechococcus_phage	29.4	6.3e-20
>prophage 6
NC_015579	Novosphingobium sp. PP1Y plasmid Lpl, complete sequence	192103	64466	65138	192103		Phaeocystis_globosa_virus(100.0%)	1	NA	NA
WP_013831334.1|64466_65138_-	ABC transporter ATP-binding protein	NA	R4TX06	Phaeocystis_globosa_virus	28.2	1.9e-05
>prophage 7
NC_015579	Novosphingobium sp. PP1Y plasmid Lpl, complete sequence	192103	77430	79660	192103	transposase	Lactococcus_phage(50.0%)	2	NA	NA
WP_013831348.1|77430_78159_-	ATP-binding protein	NA	A0A059NT77	Lactococcus_phage	38.8	1.3e-34
WP_013831349.1|78145_79660_-|transposase	IS21 family transposase	transposase	A0A2L1IVA1	Escherichia_phage	25.6	1.2e-15
>prophage 8
NC_015579	Novosphingobium sp. PP1Y plasmid Lpl, complete sequence	192103	86440	87634	192103		Macacine_betaherpesvirus(100.0%)	1	NA	NA
WP_013831353.1|86440_87634_+	AAA family ATPase	NA	A0A2I6B2X3	Macacine_betaherpesvirus	35.9	2.2e-44
>prophage 9
NC_015579	Novosphingobium sp. PP1Y plasmid Lpl, complete sequence	192103	100464	104943	192103		Paramecium_bursaria_Chlorella_virus(100.0%)	1	NA	NA
WP_013831367.1|100464_104943_+	UDP-forming cellulose synthase catalytic subunit	NA	M1I277	Paramecium_bursaria_Chlorella_virus	33.6	9.7e-37
>prophage 10
NC_015579	Novosphingobium sp. PP1Y plasmid Lpl, complete sequence	192103	122494	128619	192103	transposase	Enterobacteria_phage(25.0%)	7	NA	NA
WP_013831391.1|122494_124021_+|transposase	IS21 family transposase	transposase	U5N3F9	Enterobacteria_phage	28.6	9.4e-24
WP_013831392.1|124010_124790_+	ATP-binding protein	NA	A0A059NT77	Lactococcus_phage	33.1	9.9e-30
WP_013831393.1|124909_125179_-	type II toxin-antitoxin system RelE/ParE family toxin	NA	NA	NA	NA	NA
WP_013831394.1|125242_125719_+	Hsp20 family protein	NA	A0A0C5AE28	Cyanophage	42.4	2.3e-21
WP_148274761.1|126424_126844_+	SPW repeat protein	NA	NA	NA	NA	NA
WP_013831397.1|127295_127727_-	phasin family protein	NA	NA	NA	NA	NA
WP_013831398.1|127896_128619_-	acetoacetyl-CoA reductase	NA	F2NZ40	Diadromus_pulchellus_ascovirus	28.7	2.1e-13
>prophage 11
NC_015579	Novosphingobium sp. PP1Y plasmid Lpl, complete sequence	192103	152971	157024	192103		Acanthocystis_turfacea_Chlorella_virus(50.0%)	3	NA	NA
WP_013831430.1|152971_154876_+	potassium transporter Kup	NA	M1IAJ4	Acanthocystis_turfacea_Chlorella_virus	30.3	5.4e-61
WP_013831431.1|154901_156347_+	DUF4118 domain-containing protein	NA	NA	NA	NA	NA
WP_013831432.1|156343_157024_+	response regulator transcription factor	NA	W8CYM9	Bacillus_phage	33.5	1.1e-27
>prophage 12
NC_015579	Novosphingobium sp. PP1Y plasmid Lpl, complete sequence	192103	161788	168497	192103	integrase	uncultured_Caudovirales_phage(66.67%)	7	149186:149199	169328:169341
149186:149199	attL	ACCGGCACGCCGTC	NA	NA	NA	NA
WP_013831439.1|161788_162076_+	BrnA antitoxin family protein	NA	A0A2H4J5Y5	uncultured_Caudovirales_phage	62.8	2.7e-09
WP_041558059.1|162448_163303_-	hypothetical protein	NA	NA	NA	NA	NA
WP_013831441.1|163302_164946_-	AAA family ATPase	NA	K7PHD1	Enterobacteria_phage	28.9	1.0e-39
WP_013831442.1|165521_166766_-	hypothetical protein	NA	NA	NA	NA	NA
WP_007014466.1|167141_167444_-	type II toxin-antitoxin system RelE/ParE family toxin	NA	NA	NA	NA	NA
WP_013831443.1|167446_167692_-	type II toxin-antitoxin system ParD family antitoxin	NA	NA	NA	NA	NA
WP_013831444.1|167864_168497_+|integrase	tyrosine-type recombinase/integrase	integrase	A0A2H4J6I5	uncultured_Caudovirales_phage	34.2	6.0e-09
169328:169341	attR	GACGGCGTGCCGGT	NA	NA	NA	NA
>prophage 13
NC_015579	Novosphingobium sp. PP1Y plasmid Lpl, complete sequence	192103	179375	180068	192103		Wolbachia_phage(100.0%)	1	NA	NA
WP_041558071.1|179375_180068_-	helix-turn-helix transcriptional regulator	NA	A0A1B2LRS2	Wolbachia_phage	31.4	3.4e-05
>prophage 14
NC_015579	Novosphingobium sp. PP1Y plasmid Lpl, complete sequence	192103	185358	186327	192103		Caulobacter_phage(100.0%)	1	NA	NA
WP_013831460.1|185358_186327_+	DUF1738 domain-containing protein	NA	A0A1V0EEV1	Caulobacter_phage	36.1	8.2e-42
>prophage 1
NC_015583	Novosphingobium sp. PP1Y plasmid Mpl, complete sequence	1161602	347681	355133	1161602		Trichoplusia_ni_ascovirus(66.67%)	9	NA	NA
WP_148274792.1|347681_349100_+	cytochrome P450	NA	A0A2I2L481	Orpheovirus	22.4	9.6e-15
WP_013836548.1|349112_349445_+	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_013836549.1|349485_350274_-	glucose 1-dehydrogenase	NA	Q06VL0	Trichoplusia_ni_ascovirus	30.6	2.2e-16
WP_013836550.1|350405_351260_+	SDR family oxidoreductase	NA	Q06VL0	Trichoplusia_ni_ascovirus	30.8	1.7e-14
WP_013836551.1|351256_351682_+	nuclear transport factor 2 family protein	NA	NA	NA	NA	NA
WP_013836552.1|351678_352488_+	SDR family oxidoreductase	NA	Q06VL0	Trichoplusia_ni_ascovirus	31.3	1.8e-13
WP_013836553.1|352484_353402_+	NAD-dependent epimerase/dehydratase family protein	NA	NA	NA	NA	NA
WP_013836554.1|353421_354354_+	alpha/beta hydrolase	NA	A0A0G2YDK2	Acanthamoeba_polyphaga_mimivirus	33.1	3.5e-37
WP_013836555.1|354377_355133_-	SDR family oxidoreductase	NA	Q06VL0	Trichoplusia_ni_ascovirus	33.2	9.0e-20
>prophage 2
NC_015583	Novosphingobium sp. PP1Y plasmid Mpl, complete sequence	1161602	805532	868800	1161602	integrase,transposase	Ralstonia_phage(12.5%)	44	792296:792310	875442:875456
792296:792310	attL	AGCGAAGTGTTGGCG	NA	NA	NA	NA
WP_013836911.1|805532_806609_-|transposase	IS5 family transposase	transposase	A0A077K814	Ralstonia_phage	28.6	1.3e-06
WP_013836912.1|807167_808526_-	MFS transporter	NA	NA	NA	NA	NA
WP_148274834.1|808522_810766_-	glycoside hydrolase family 3 C-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_148274835.1|811040_813293_+	TonB-dependent receptor	NA	NA	NA	NA	NA
WP_051009949.1|813405_814443_+	hypothetical protein	NA	NA	NA	NA	NA
WP_148274836.1|814503_815598_-	substrate-binding domain-containing protein	NA	C6ZCU4	Enterobacteria_phage	29.4	1.8e-29
WP_013836917.1|815947_816445_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_013836918.1|816541_817939_-	aldehyde dehydrogenase	NA	NA	NA	NA	NA
WP_013836919.1|817972_818452_-	aromatic-ring-hydroxylating dioxygenase subunit beta	NA	NA	NA	NA	NA
WP_013836920.1|818444_819803_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_013836921.1|819888_821691_-	TonB-dependent receptor	NA	NA	NA	NA	NA
WP_013836923.1|822490_823456_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_013836926.1|824643_825903_-	MFS transporter	NA	NA	NA	NA	NA
WP_013836927.1|825924_826869_-	ketopantoate reductase family protein	NA	NA	NA	NA	NA
WP_013836928.1|826988_828704_+	thiamine pyrophosphate-requiring protein	NA	NA	NA	NA	NA
WP_013836932.1|831115_833194_-	acetate--CoA ligase family protein	NA	NA	NA	NA	NA
WP_148274837.1|833190_834018_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_148274838.1|834045_835365_-	MFS transporter	NA	NA	NA	NA	NA
WP_013836935.1|835523_837539_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_013836936.1|837570_838779_-	3-oxoadipyl-CoA thiolase	NA	NA	NA	NA	NA
WP_051009954.1|838854_840000_-	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_013836938.1|839996_842018_-	glycoside hydrolase family 3 protein	NA	NA	NA	NA	NA
WP_013836940.1|842222_843119_+	transcriptional regulator GcvA	NA	Q6JIH3	Burkholderia_virus	27.6	5.3e-19
WP_148274840.1|843230_843644_+	cupin domain-containing protein	NA	NA	NA	NA	NA
WP_051009956.1|844283_845171_-	hypothetical protein	NA	NA	NA	NA	NA
WP_013836945.1|845185_846490_-	MSMEG_0569 family flavin-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_041558385.1|846513_846801_-	MSMEG_0570 family nitrogen starvation response protein	NA	NA	NA	NA	NA
WP_013836946.1|846793_847768_-	sll0787 family AIR synthase-like protein	NA	NA	NA	NA	NA
WP_013836947.1|847764_848307_-	histone acetyltransferase	NA	NA	NA	NA	NA
WP_148274841.1|848306_849431_-	MSMEG_0568 family radical SAM protein	NA	NA	NA	NA	NA
WP_013836949.1|849366_850413_-	Nit6803 family nitriliase	NA	NA	NA	NA	NA
WP_013836950.1|850426_850909_-	MSMEG_0572 family nitrogen starvation response protein	NA	NA	NA	NA	NA
WP_013836951.1|851206_852586_+	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_051009958.1|852771_855006_+	TonB-dependent receptor	NA	NA	NA	NA	NA
WP_083835174.1|856491_856794_-	type II toxin-antitoxin system RelE/ParE family toxin	NA	NA	NA	NA	NA
WP_041558388.1|856892_857261_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_065762387.1|857290_857557_+	IS66 family insertion sequence element accessory protein TnpB	NA	A0A0P0ZBY2	Stx2-converting_phage	60.9	2.8e-24
WP_013833472.1|861187_861367_-	hypothetical protein	NA	NA	NA	NA	NA
WP_013836956.1|861903_862542_+	plasmid pRiA4b ORF-3 family protein	NA	A0A2H4PDG5	Mycobacterium_phage	30.3	7.9e-17
WP_041558588.1|862560_862818_-	type II toxin-antitoxin system ParD family antitoxin	NA	NA	NA	NA	NA
WP_148274889.1|864829_865720_+|integrase	tyrosine-type recombinase/integrase	integrase	A0A1B1P7C7	Bacillus_phage	24.7	3.3e-05
WP_013836959.1|865719_866625_+|integrase	tyrosine-type recombinase/integrase	integrase	NA	NA	NA	NA
WP_013836960.1|866621_867611_+|integrase	tyrosine-type recombinase/integrase	integrase	A0A1P8DJ76	Virus_Rctr85	31.0	1.1e-12
WP_041558390.1|867891_868800_-|integrase	site-specific integrase	integrase	A0A1P8DJJ6	Virus_Rctr41k	31.2	5.6e-32
875442:875456	attR	CGCCAACACTTCGCT	NA	NA	NA	NA
>prophage 1
NC_015582	Novosphingobium sp. PP1Y plasmid Spl, complete sequence	48714	0	5070	48714		Rhizobium_phage(50.0%)	3	NA	NA
WP_148274745.1|824_1157_-	hypothetical protein	NA	NA	NA	NA	NA
WP_041557936.1|2846_3224_+	DUF3768 domain-containing protein	NA	L7TKV8	Rhizobium_phage	40.7	5.7e-15
WP_013836216.1|3291_5070_+	ParB/RepB/Spo0J family partition protein	NA	G8DH78	Emiliania_huxleyi_virus	30.2	2.0e-38
>prophage 2
NC_015582	Novosphingobium sp. PP1Y plasmid Spl, complete sequence	48714	10877	16372	48714		Escherichia_phage(40.0%)	8	NA	NA
WP_083835136.1|10877_12098_-	site-specific DNA-methyltransferase	NA	G8I4P9	Mycobacterium_phage	38.9	5.2e-09
WP_013836219.1|12006_12777_-	site-specific DNA-methyltransferase	NA	H6W8D6	Escherichia_phage	36.7	4.1e-12
WP_013836220.1|12835_13168_-	HigA family addiction module antidote protein	NA	A0A2L1IV52	Escherichia_phage	31.2	2.1e-05
WP_013836221.1|13177_13468_-	type II toxin-antitoxin system RelE/ParE family toxin	NA	NA	NA	NA	NA
WP_148274746.1|13532_13997_+	hypothetical protein	NA	NA	NA	NA	NA
WP_013836223.1|14224_14803_+	recombinase family protein	NA	E5FFF9	Burkholderia_phage	47.6	1.5e-38
WP_013836224.1|15117_15456_+	single-stranded DNA-binding protein	NA	NA	NA	NA	NA
WP_013836225.1|15703_16372_+	ParA family protein	NA	A0A0A8IL09	Aurantimonas_phage	46.6	3.1e-40
>prophage 3
NC_015582	Novosphingobium sp. PP1Y plasmid Spl, complete sequence	48714	20947	24627	48714	transposase	Salmonella_phage(50.0%)	2	NA	NA
WP_013836235.1|20947_23917_-|transposase	Tn3 family transposase	transposase	A0A1B0V7H9	Salmonella_phage	39.7	9.5e-198
WP_013836236.1|24057_24627_+	recombinase family protein	NA	A0A219Y9V9	Aeromonas_phage	46.1	3.1e-33
