The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NC_017769	Streptococcus pneumoniae ST556, complete sequence	2150813	13046	110163	2150813	integrase,tRNA,bacteriocin,holin,terminase,transposase,tail,portal,protease,capsid	Streptococcus_phage(75.36%)	95	10839:10854	59731:59746
10839:10854	attL	CCAAAAATTTCTGTAA	NA	NA	NA	NA
WP_000424684.1|13046_13652_-	Rha family transcriptional regulator	NA	A0A192Y918	Salmonella_phage	34.1	6.8e-18
WP_014678319.1|13673_14051_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001241280.1|14125_14317_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_001814778.1|14520_15237_+	helix-turn-helix domain-containing protein	NA	A0A1S5SFG5	Streptococcus_phage	63.0	2.6e-77
WP_000666926.1|15255_15924_+	zinc ribbon domain-containing protein	NA	A0A141DZS3	Streptococcus_phage	74.1	8.4e-78
WP_000222518.1|16062_16731_+	Fic family protein	NA	D7RWK9	Brochothrix_phage	24.6	9.2e-08
WP_000255647.1|17194_17653_-	hypothetical protein	NA	A0A1X9I5V5	Streptococcus_phage	46.0	5.6e-25
WP_000417039.1|19075_19381_+	protein rep	NA	NA	NA	NA	NA
WP_000422980.1|19485_20046_+	multidrug DMT transporter	NA	A0A1W6JPJ7	Morganella_phage	56.1	4.6e-21
WP_000704676.1|20481_21648_+|integrase	site-specific integrase	integrase	A0A1X9I5Y5	Streptococcus_phage	51.5	2.0e-103
WP_001218707.1|21767_22883_+	redox-regulated ATPase YchF	NA	NA	NA	NA	NA
WP_000163933.1|22953_23523_+|tRNA	aminoacyl-tRNA hydrolase	tRNA	NA	NA	NA	NA
WP_000258080.1|23523_27033_+	transcription-repair coupling factor	NA	NA	NA	NA	NA
WP_001234978.1|27090_27357_+	RNA-binding S4 domain-containing protein	NA	NA	NA	NA	NA
WP_000041909.1|27349_27718_+	septum formation initiator family protein	NA	NA	NA	NA	NA
WP_001224749.1|27837_29106_+	serine hydrolase	NA	NA	NA	NA	NA
WP_001208988.1|29102_30380_+|tRNA	tRNA lysidine(34) synthetase TilS	tRNA	A7K9Y8	Acanthocystis_turfacea_chlorella_virus	24.1	2.5e-06
WP_000892184.1|30383_30926_+	hypoxanthine phosphoribosyltransferase	NA	A0A218MMB5	uncultured_virus	28.9	2.7e-10
WP_000744557.1|30941_32900_+|protease	ATP-dependent zinc metalloprotease FtsH	protease	H8ZJI5	Ostreococcus_tauri_virus	45.8	3.2e-109
WP_000588897.1|33021_33501_+	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA	NA
WP_000939544.1|40356_40593_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000205044.1|40823_42110_+	adenylosuccinate synthase	NA	L7Y4J5	Megavirus	37.1	2.7e-72
WP_000291879.1|42310_42778_+	nucleoside deaminase	NA	NA	NA	NA	NA
WP_000266852.1|42986_44129_-|integrase	site-specific integrase	integrase	U4KJ82	Streptococcus_phage	99.2	1.4e-210
WP_001020945.1|44247_44598_-	hypothetical protein	NA	Q9MBY8	Streptococcus_phage	100.0	7.3e-57
WP_000153672.1|44885_45242_-	helix-turn-helix transcriptional regulator	NA	A0A1S5SDR1	Streptococcus_phage	100.0	4.2e-60
WP_000638668.1|45517_45703_+	helix-turn-helix transcriptional regulator	NA	A0A1S5SDM7	Streptococcus_phage	98.4	1.0e-25
WP_001004041.1|45704_46403_+	phage antirepressor KilAC domain-containing protein	NA	A0A1S5SDI0	Streptococcus_phage	100.0	7.6e-130
WP_001811944.1|46662_46899_-	hypothetical protein	NA	A0A1S5SDG8	Streptococcus_phage	100.0	7.9e-39
WP_000450962.1|47576_47843_+	hypothetical protein	NA	A0A1S5SDB5	Streptococcus_phage	100.0	1.5e-41
WP_001134283.1|47926_48379_+	hypothetical protein	NA	A0A1S5SDE0	Streptococcus_phage	100.0	8.5e-82
WP_000774580.1|48384_49086_+	ERF family protein	NA	A0A1S5SEM6	Streptococcus_phage	100.0	1.5e-117
WP_000237815.1|49088_50081_+	DUF1351 domain-containing protein	NA	A0A1S5SDA5	Streptococcus_phage	100.0	5.5e-174
WP_001203349.1|50102_50279_+	hypothetical protein	NA	A0A1S5SE71	Streptococcus_phage	100.0	4.8e-25
WP_000609578.1|50268_50844_+	single-stranded DNA-binding protein	NA	A0A1S5SDP3	Streptococcus_phage	100.0	2.0e-88
WP_000670027.1|50869_52108_+	DNA cytosine methyltransferase	NA	A0A1S5SDI9	Streptococcus_phage	100.0	5.5e-224
WP_000161129.1|52142_52346_+	hypothetical protein	NA	A0A1S5SDE4	Streptococcus_phage	100.0	4.4e-30
WP_001286809.1|52569_52782_+	hypothetical protein	NA	A0A1S5SEA6	Streptococcus_phage	100.0	1.7e-32
WP_000667209.1|52792_53194_+	hypothetical protein	NA	U4KJA0	Streptococcus_phage	100.0	1.9e-72
WP_000573750.1|53195_53402_+	hypothetical protein	NA	A0A1S5SDU5	Streptococcus_phage	100.0	1.1e-31
WP_000969685.1|53450_53768_+	hypothetical protein	NA	A0A1S5SDC6	Streptococcus_phage	100.0	3.5e-58
WP_001021768.1|53769_54285_+	DUF1642 domain-containing protein	NA	A0A1S5SDB8	Streptococcus_phage	100.0	9.0e-96
WP_000160161.1|54285_54498_+	hypothetical protein	NA	A0A1S5SDS6	Streptococcus_phage	100.0	8.1e-35
WP_001247149.1|54494_54866_+	hypothetical protein	NA	A0A1S5SDQ3	Streptococcus_phage	100.0	8.5e-56
WP_000194856.1|54886_55180_+	hypothetical protein	NA	A0A1S5SDK0	Streptococcus_phage	100.0	9.4e-50
WP_000162611.1|55179_55572_+	hypothetical protein	NA	A0A1S5SED1	Streptococcus_phage	100.0	7.1e-69
WP_000425574.1|55637_56732_+	DUF4417 domain-containing protein	NA	A0A1S5SDI7	Streptococcus_phage	100.0	1.4e-202
WP_000057535.1|56712_57459_+	hypothetical protein	NA	A0A1S5SDN7	Streptococcus_phage	100.0	2.9e-135
WP_001136855.1|57662_58118_+	hypothetical protein	NA	A0A1C9LX59	Streptococcus_phage	100.0	5.0e-74
WP_000143806.1|58107_59418_+|terminase	PBSX family phage terminase large subunit	terminase	U4KJA9	Streptococcus_phage	100.0	1.8e-257
WP_000051858.1|59430_60999_+|portal	phage portal protein	portal	A0A141E1J7	Streptococcus_phage	99.4	5.4e-301
59731:59746	attR	TTACAGAAATTTTTGG	NA	NA	NA	NA
WP_000169861.1|60985_61159_+	hypothetical protein	NA	A0A1S5SEA5	Streptococcus_phage	100.0	1.3e-22
WP_000730217.1|61201_62353_+|capsid	phage minor capsid protein	capsid	A0A1S5SEP6	Streptococcus_phage	100.0	1.9e-218
WP_000896122.1|62491_63055_+	phage scaffolding protein	NA	A0A1S5SEM4	Streptococcus_phage	100.0	9.9e-80
WP_001139823.1|63072_63954_+	hypothetical protein	NA	A0A1S5SDL2	Streptococcus_phage	100.0	3.6e-161
WP_001240344.1|63964_64198_+	hypothetical protein	NA	A0A1S5SEE1	Streptococcus_phage	100.0	6.8e-35
WP_000221836.1|64240_64633_+	hypothetical protein	NA	A0A1S5SEH1	Streptococcus_phage	100.0	5.3e-64
WP_000565934.1|64622_64994_+	hypothetical protein	NA	A0A1S5SDP6	Streptococcus_phage	100.0	1.5e-63
WP_000020371.1|64993_65338_+	hypothetical protein	NA	A0A1S5SDE2	Streptococcus_phage	100.0	8.5e-58
WP_001208881.1|65337_65745_+|capsid	phage capsid protein	capsid	A0A1S5SEE3	Streptococcus_phage	100.0	3.2e-72
WP_000198229.1|65741_66191_+	hypothetical protein	NA	A0A1S5SDE5	Streptococcus_phage	100.0	4.9e-82
WP_000129839.1|66255_66744_+	hypothetical protein	NA	A0A1S5SDD9	Streptococcus_phage	100.0	7.5e-84
WP_000062053.1|66756_67326_+	hypothetical protein	NA	A0A1S5SCA6	Streptococcus_phage	99.5	3.2e-102
WP_001279483.1|67318_70600_+	tape measure protein	NA	A0A1S5SDS2	Streptococcus_phage	100.0	0.0e+00
WP_000161549.1|70596_72111_+|tail	phage tail family protein	tail	A0A1S5SEJ1	Streptococcus_phage	100.0	2.0e-300
WP_053039873.1|72112_78583_+|tail	phage tail protein	tail	A0A1S5SDH6	Streptococcus_phage	70.9	0.0e+00
WP_000159969.1|78594_80673_+	hypothetical protein	NA	A0A1S5SDL3	Streptococcus_phage	100.0	0.0e+00
WP_000922100.1|80732_80996_+	hypothetical protein	NA	A0A1S5SEN3	Streptococcus_phage	100.0	1.8e-39
WP_000687457.1|81005_81422_+|holin	phage holin family protein	holin	A0A1S5SEC7	Streptococcus_phage	100.0	4.9e-68
WP_001186225.1|81425_81758_+|holin	phage holin	holin	A0A1S5SDI2	Streptococcus_phage	100.0	4.3e-51
WP_000350491.1|81761_82718_+	N-acetylmuramoyl-L-alanine amidase LytA	NA	A0A1S5SDF6	Streptococcus_phage	100.0	6.1e-146
WP_000701992.1|82997_83441_+	dUTP diphosphatase	NA	Q2WG49	Clostridium_botulinum_D_phage	47.3	2.1e-29
WP_000691236.1|83442_83958_+	histidine phosphatase family protein	NA	NA	NA	NA	NA
WP_073076903.1|83971_85333_+	DNA repair protein RadA	NA	NA	NA	NA	NA
WP_001809263.1|85405_85903_+	carbonic anhydrase	NA	NA	NA	NA	NA
WP_000749768.1|85927_86743_+|protease	PrsW family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_000010163.1|86887_87856_+	ribose-phosphate diphosphokinase	NA	A0A1V0SHF7	Hokovirus	34.7	4.0e-44
WP_000492735.1|88399_88633_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001816159.1|88625_88742_-	hypothetical protein	NA	NA	NA	NA	NA
WP_060544779.1|88956_89307_-|transposase	PD-(D/E)XK nuclease family transposase	transposase	NA	NA	NA	NA
WP_000358436.1|89562_92196_+	DNA polymerase I	NA	A0A218MKQ4	uncultured_virus	30.3	3.4e-58
WP_000076479.1|92280_92718_+	CoA-binding protein	NA	NA	NA	NA	NA
WP_000009178.1|92900_93911_-	YeiH family putative sulfate export transporter	NA	NA	NA	NA	NA
WP_000366375.1|94059_95229_+	pyridoxal phosphate-dependent aminotransferase	NA	NA	NA	NA	NA
WP_000616166.1|95225_95996_+	DNA repair protein RecO	NA	NA	NA	NA	NA
WP_000717456.1|95992_96985_+	phosphate acyltransferase PlsX	NA	NA	NA	NA	NA
WP_000136447.1|96990_97224_+	acyl carrier protein	NA	A0A2I7RIC8	Vibrio_phage	40.6	3.3e-05
WP_001093071.1|97762_97993_+|bacteriocin	bacteriocin-like peptide BlpU	bacteriocin	NA	NA	NA	NA
WP_000668293.1|98707_100861_+	peptide cleavage/export ABC transporter	NA	W8CYL7	Bacillus_phage	28.0	1.0e-44
WP_000801629.1|100873_102223_+	HlyD family secretion protein	NA	NA	NA	NA	NA
WP_000043313.1|102392_103100_+	phosphoribosylaminoimidazolesuccinocarboxamide synthase	NA	A0A1D8KNF0	Synechococcus_phage	39.2	1.3e-41
WP_000361166.1|103301_107027_+	phosphoribosylformylglycinamidine synthase	NA	A6N228	Microbacterium_phage	25.5	6.2e-37
WP_000220633.1|107119_108562_+	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	35.1	5.7e-55
WP_000182580.1|108598_109621_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	A0A1D7SE90	Cyanophage	44.2	7.3e-65
WP_000717501.1|109617_110163_+	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	35.0	9.7e-24
>prophage 2
NC_017769	Streptococcus pneumoniae ST556, complete sequence	2150813	152026	193464	2150813	transposase,bacteriocin,tRNA	Streptococcus_phage(50.0%)	43	NA	NA
WP_001821265.1|152026_153373_+|transposase	IS1380-like element ISSpn5 family transposase	transposase	A0A1X9I6F6	Streptococcus_phage	40.0	4.5e-78
WP_001257240.1|154444_154642_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000808434.1|154878_155943_-	membrane protein	NA	NA	NA	NA	NA
WP_001229057.1|156005_156917_-	DUF4097 family beta strand repeat protein	NA	NA	NA	NA	NA
WP_000198675.1|156909_157503_-	DUF1700 domain-containing protein	NA	NA	NA	NA	NA
WP_000273854.1|157489_157816_-	PadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_000744897.1|157954_159121_-	CynX/NimT family MFS transporter	NA	NA	NA	NA	NA
WP_000096202.1|159178_160336_+	glycosyltransferase family 2 protein	NA	NA	NA	NA	NA
WP_001035700.1|160377_162228_+	polysaccharide biosynthesis protein	NA	A0A2P1ELS8	Moumouvirus	30.5	7.6e-28
WP_025168890.1|162123_162528_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000200898.1|162577_163210_-	HAD family hydrolase	NA	NA	NA	NA	NA
WP_000500038.1|163231_164104_-	L-serine ammonia-lyase, iron-sulfur-dependent, subunit alpha	NA	NA	NA	NA	NA
WP_000838912.1|164112_164784_-	L-serine ammonia-lyase, iron-sulfur-dependent, subunit beta	NA	NA	NA	NA	NA
WP_000836450.1|165025_165613_+	LysM peptidoglycan-binding domain-containing protein	NA	A0A288TY55	Enterococcus_phage	56.7	1.6e-27
WP_001189285.1|165664_165985_-	hypothetical protein	NA	NA	NA	NA	NA
WP_073077611.1|166391_166685_+|bacteriocin	lactococcin 972 family bacteriocin	bacteriocin	NA	NA	NA	NA
WP_000723961.1|166739_168848_+|bacteriocin	bacteriocin-associated integral membrane family protein	bacteriocin	NA	NA	NA	NA
WP_000571330.1|168844_169486_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	34.8	4.3e-23
WP_001038474.1|169692_170499_+	transporter substrate-binding domain-containing protein	NA	NA	NA	NA	NA
WP_099516442.1|170464_170935_+	argininosuccinate synthase	NA	NA	NA	NA	NA
WP_001189278.1|171224_171545_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000424418.1|172303_172672_+|bacteriocin	SP_0115 family bacteriocin-like peptide	bacteriocin	NA	NA	NA	NA
WP_001268157.1|173071_173935_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_000915345.1|174400_174739_+	peptidase C39	NA	NA	NA	NA	NA
WP_000973716.1|175366_175579_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000424467.1|175994_176357_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000356083.1|176337_176583_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001814711.1|176739_177798_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000792250.1|178113_179091_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000424474.1|179467_179842_+|bacteriocin	SPH_0224 family bacteriocin-like peptide	bacteriocin	NA	NA	NA	NA
WP_000619753.1|180049_180952_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000424439.1|181007_181361_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000072924.1|181357_182086_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000770314.1|183220_183460_+	hypothetical protein	NA	M1Q0Z8	Streptococcus_phage	54.1	7.2e-16
WP_000058768.1|183478_183724_+	hypothetical protein	NA	M1Q0Z8	Streptococcus_phage	53.4	1.3e-15
WP_001035384.1|184011_186186_+	pneumococcal surface protein A	NA	NA	NA	NA	NA
WP_001282969.1|186586_187708_+|tRNA	tRNA 2-thiouridine(34) synthase MnmA	tRNA	NA	NA	NA	NA
WP_000193634.1|187848_188304_+	NUDIX hydrolase	NA	NA	NA	NA	NA
WP_000220964.1|188313_190227_+|tRNA	tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG	tRNA	NA	NA	NA	NA
WP_000331983.1|190579_192259_-	ribonuclease J	NA	NA	NA	NA	NA
WP_000639589.1|192260_192494_-	DNA-dependent RNA polymerase auxiliary subunit epsilon family protein	NA	NA	NA	NA	NA
WP_000282479.1|192773_192989_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000974047.1|193311_193464_-|bacteriocin	fratricide two-peptide bacteriocin subunit CibB	bacteriocin	NA	NA	NA	NA
>prophage 3
NC_017769	Streptococcus pneumoniae ST556, complete sequence	2150813	239847	247673	2150813		Streptococcus_phage(75.0%)	13	NA	NA
WP_001107589.1|239847_240561_-	helix-turn-helix domain-containing protein	NA	Q708R9	Streptococcus_phage	51.9	2.0e-16
WP_000090006.1|240713_240944_+	helix-turn-helix transcriptional regulator	NA	X2KUC2	Streptococcus_phage	47.0	3.7e-09
WP_000424665.1|240959_241586_+	Rha family transcriptional regulator	NA	R9QNB1	Lactococcus_phage	40.8	2.1e-30
WP_000141100.1|241957_242410_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000174331.1|242406_242607_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001003774.1|242608_242824_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000058832.1|242820_243162_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000492137.1|243154_243436_+	hypothetical protein	NA	A0A1X9I5U9	Streptococcus_phage	67.8	7.9e-30
WP_000158192.1|243570_244437_+	primase alpha helix C-terminal domain-containing protein	NA	A0A1X9I6L2	Streptococcus_phage	75.0	8.2e-126
WP_000434359.1|244489_245959_+	DNA primase family protein	NA	Q9AZI5	Lactococcus_phage	35.0	2.3e-64
WP_000865230.1|246311_246479_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000173130.1|246562_247093_+	hypothetical protein	NA	A0A1X9I5U4	Streptococcus_phage	48.7	2.8e-36
WP_000811078.1|247163_247673_+	hypothetical protein	NA	A0A1X9I5V2	Streptococcus_phage	53.9	5.8e-47
>prophage 4
NC_017769	Streptococcus pneumoniae ST556, complete sequence	2150813	387790	442595	2150813	transposase,protease,holin,integrase	Streptococcus_phage(23.08%)	44	390637:390650	443977:443990
WP_001063396.1|387790_389896_+|protease	ATP-dependent Clp protease ATP-binding subunit	protease	H6X3M6	Enterobacteria_phage	37.6	1.0e-116
WP_000032550.1|390190_390673_-	S-ribosylhomocysteine lyase	NA	NA	NA	NA	NA
390637:390650	attL	CAAGTTCAAAACTT	NA	NA	NA	NA
WP_000743620.1|390767_392252_-	DUF1846 domain-containing protein	NA	NA	NA	NA	NA
WP_001156769.1|392404_394012_+	alpha-glucosidase	NA	NA	NA	NA	NA
WP_033604964.1|394176_394344_+	S-ribosylhomocysteinase	NA	NA	NA	NA	NA
WP_000091077.1|395431_396877_+	capsular polysaccharide biosynthesis protein Cps4A	NA	A0A1X9I5X1	Streptococcus_phage	60.1	3.6e-134
WP_000565348.1|396878_397610_+	tyrosine-protein phosphatase CpsB	NA	NA	NA	NA	NA
WP_000664166.1|397618_398311_+	capsular polysaccharide biosynthesis protein CpsC	NA	A0A1X9I5E1	Streptococcus_phage	55.9	4.3e-61
WP_001142521.1|398320_399004_+	polysaccharide biosynthesis tyrosine autokinase CpsD	NA	A0A1X9I5D6	Streptococcus_phage	60.9	1.3e-70
WP_000343581.1|399019_400387_+	sugar transferase	NA	NA	NA	NA	NA
WP_001205625.1|400390_401134_+	WecB/TagA/CpsF family glycosyltransferase	NA	NA	NA	NA	NA
WP_001076786.1|401130_401955_+	LicD family protein	NA	A0A1V0SD50	Indivirus	38.7	1.8e-05
WP_000458863.1|401956_402835_+	glycosyltransferase family 2 protein	NA	NA	NA	NA	NA
WP_000120848.1|402835_404173_+	oligosaccharide repeat unit polymerase	NA	NA	NA	NA	NA
WP_001092842.1|404195_405617_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000723326.1|405680_406769_+	UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing)	NA	A0A1V0SAG5	Catovirus	30.3	1.0e-27
WP_000676118.1|406807_407677_+	glucose-1-phosphate thymidylyltransferase RfbA	NA	K7QKA7	Escherichia_phage	63.2	9.2e-101
WP_000131463.1|407677_408274_+	dTDP-4-dehydrorhamnose 3,5-epimerase family protein	NA	H9NC63	Sphingomonas_phage	32.8	3.0e-10
WP_000141500.1|408283_409333_+	dTDP-glucose 4,6-dehydratase	NA	I7HTA3	Enterobacteria_phage	44.2	8.3e-72
WP_000600898.1|409398_410250_+	dTDP-4-dehydrorhamnose reductase	NA	A0A291LA50	Escherichia_phage	35.4	4.3e-26
WP_000842571.1|411718_413701_+	peptide ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_001032472.1|414001_419305_+	YSIRK-type signal peptide-containing protein	NA	NA	NA	NA	NA
WP_001041857.1|419470_421630_-	PBP1A family penicillin-binding protein	NA	NA	NA	NA	NA
WP_000248773.1|421626_422223_-	Holliday junction resolvase RecU	NA	A0A1L2JY30	Aeribacillus_phage	33.9	1.5e-17
WP_000179553.1|422289_422817_+	DUF1273 domain-containing protein	NA	NA	NA	NA	NA
WP_000200644.1|422886_423228_+	cell division regulator GpsB	NA	NA	NA	NA	NA
WP_000711398.1|423713_424871_+	class I SAM-dependent RNA methyltransferase	NA	NA	NA	NA	NA
WP_000039290.1|424883_426278_+	mid-cell-anchored protein MapZ	NA	NA	NA	NA	NA
WP_000158792.1|426353_427778_+	NADP-dependent phosphogluconate dehydrogenase	NA	M4QQM4	Ostreococcus_lucimarinus_virus	29.6	2.7e-41
WP_000518011.1|427789_428479_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_000698035.1|428576_429539_+|holin	choline-binding protein CbpC	holin	NA	NA	NA	NA
WP_000771128.1|429557_430556_+|holin	choline-binding protein CbpJ	holin	NA	NA	NA	NA
WP_000765677.1|430673_431906_-	MFS transporter	NA	NA	NA	NA	NA
WP_000196972.1|433436_433766_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_000163329.1|433887_434766_+	mevalonate kinase	NA	NA	NA	NA	NA
WP_000373456.1|434747_435701_+	diphosphomevalonate decarboxylase	NA	NA	NA	NA	NA
WP_000562377.1|435687_436695_+	phosphomevalonate kinase	NA	NA	NA	NA	NA
WP_000210628.1|436678_437689_+	type 2 isopentenyl-diphosphate Delta-isomerase	NA	NA	NA	NA	NA
WP_001224634.1|437766_438465_+	cell wall-active antibiotics response protein	NA	NA	NA	NA	NA
WP_000743662.1|438461_439457_+	sensor histidine kinase	NA	NA	NA	NA	NA
WP_000698433.1|439470_440103_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_075218746.1|440270_440582_+	DNA alkylation repair protein	NA	NA	NA	NA	NA
WP_000754506.1|441022_441937_+|protease	serine protease	protease	NA	NA	NA	NA
WP_000378123.1|442235_442595_+|integrase	tyrosine-type recombinase/integrase	integrase	C9E2L6	Enterococcus_phage	41.0	1.4e-18
443977:443990	attR	CAAGTTCAAAACTT	NA	NA	NA	NA
>prophage 5
NC_017769	Streptococcus pneumoniae ST556, complete sequence	2150813	514174	577068	2150813	protease,transposase,bacteriocin,tRNA	Klosneuvirus(18.18%)	56	NA	NA
WP_001810089.1|514174_514345_-|transposase	transposase	transposase	NA	NA	NA	NA
WP_000628994.1|514998_516222_-	ROK family transcriptional regulator	NA	NA	NA	NA	NA
WP_001059636.1|516388_517711_+	PTS sugar transporter subunit IIC	NA	NA	NA	NA	NA
WP_000236908.1|517712_519599_+	DUF4838 domain-containing protein	NA	NA	NA	NA	NA
WP_000836781.1|519766_520111_+	PTS lactose/cellobiose transporter subunit IIA	NA	NA	NA	NA	NA
WP_000429402.1|520120_521533_+	6-phospho-beta-galactosidase	NA	NA	NA	NA	NA
WP_000359753.1|521601_523281_+	PTS transporter subunit EIIC	NA	NA	NA	NA	NA
WP_001809506.1|523406_524846_-	TrkH family potassium uptake protein	NA	NA	NA	NA	NA
WP_000691685.1|524849_526199_-	Trk system potassium transporter TrkA	NA	NA	NA	NA	NA
WP_001063601.1|526386_527235_+	S-adenosyl-l-methionine hydroxide adenosyltransferase family protein	NA	NA	NA	NA	NA
WP_000403169.1|527249_527798_+	ECF-type riboflavin transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_000693286.1|527804_528062_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000656522.1|528163_529846_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	34.4	3.4e-19
WP_001148103.1|529830_530661_+	energy-coupling factor transporter transmembrane protein EcfT	NA	NA	NA	NA	NA
WP_000181380.1|530853_531357_+|tRNA	tRNA (cytidine(34)-2'-O)-methyltransferase	tRNA	NA	NA	NA	NA
WP_000185835.1|531809_532373_+	ECF transporter S component	NA	NA	NA	NA	NA
WP_000678704.1|532386_533013_+	phosphatase PAP2 family protein	NA	NA	NA	NA	NA
WP_000867296.1|533039_533429_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000333653.1|533433_533883_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_000418402.1|534010_534598_+	DNA-directed RNA polymerase subunit delta	NA	NA	NA	NA	NA
WP_000105242.1|534987_536595_+	CTP synthase	NA	A0A1J0FA14	Only_Syngen_Nebraska_virus	47.0	8.9e-142
WP_000026631.1|537153_538785_-	Na/Pi cotransporter family protein	NA	NA	NA	NA	NA
WP_000795202.1|539073_544014_+	bacterial Ig-like domain-containing protein	NA	NA	NA	NA	NA
WP_001096743.1|544103_545300_+	phosphoglycerate kinase	NA	NA	NA	NA	NA
WP_000119900.1|545435_545963_+	aromatic acid exporter family protein	NA	NA	NA	NA	NA
WP_000659547.1|546039_546396_+	transcriptional repressor GlnR	NA	NA	NA	NA	NA
WP_001122904.1|546432_547779_+	type I glutamate--ammonia ligase	NA	NA	NA	NA	NA
WP_001808898.1|547874_547994_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000410535.1|547958_548108_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001220743.1|548560_549841_+	restriction endonuclease subunit S	NA	A0A1V0SKS6	Klosneuvirus	29.8	5.3e-12
WP_000651177.1|549897_550695_+	tyrosine-type DNA invertase PsrA	NA	A0A0H4TI16	Erysipelothrix_phage	28.7	1.3e-21
WP_000240090.1|550705_551314_+	restriction endonuclease subunit S	NA	A0A1V0SLK8	Klosneuvirus	30.1	3.9e-13
WP_000187223.1|551261_552827_-	restriction endonuclease subunit S	NA	NA	NA	NA	NA
WP_000029054.1|552826_554290_-	SAM-dependent DNA methyltransferase	NA	NA	NA	NA	NA
WP_000229085.1|554302_556636_-	DEAD/DEAH box helicase family protein	NA	A0A097BY72	Enterococcus_phage	28.9	2.0e-25
WP_001088687.1|557243_557753_+	DUF2812 domain-containing protein	NA	NA	NA	NA	NA
WP_000255769.1|557916_558951_+	heat-inducible transcriptional repressor HrcA	NA	NA	NA	NA	NA
WP_000046031.1|558977_559502_+	nucleotide exchange factor GrpE	NA	NA	NA	NA	NA
WP_000034662.1|559981_561805_+	molecular chaperone DnaK	NA	A0A0N9QXN8	Chrysochromulina_ericina_virus	47.2	1.3e-133
WP_000115730.1|561817_562171_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001066299.1|562375_563512_+	molecular chaperone DnaJ	NA	E3T4P7	Cafeteria_roenbergensis_virus	31.0	1.2e-23
WP_001808905.1|563833_564028_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000777760.1|564189_564477_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001278301.1|564486_564897_-	HIT family protein	NA	B5LJ12	Mycobacterium_phage	31.6	3.4e-05
WP_000889923.1|564964_565696_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	28.6	9.0e-25
WP_000653752.1|565692_566742_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_000132575.1|566909_567239_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000682122.1|567514_567853_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_001219126.1|567857_568595_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_000275284.1|568607_569948_+	sensor histidine kinase	NA	NA	NA	NA	NA
WP_001814919.1|570187_571534_-|transposase	IS1380-like element ISSpn5 family transposase	transposase	A0A1X9I6F6	Streptococcus_phage	40.0	4.5e-78
WP_000358814.1|571700_571856_-	quorum-sensing system pheromone BlpC	NA	NA	NA	NA	NA
WP_001069099.1|571912_573274_-|bacteriocin	bacteriocin secretion accessory protein	bacteriocin	NA	NA	NA	NA
WP_001093269.1|574817_575066_+|bacteriocin	bacteriocin	bacteriocin	NA	NA	NA	NA
WP_000483697.1|575081_575291_+|bacteriocin	bacteriocin	bacteriocin	NA	NA	NA	NA
WP_000497530.1|576492_577068_+|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
>prophage 6
NC_017769	Streptococcus pneumoniae ST556, complete sequence	2150813	807169	814175	2150813		Streptococcus_phage(42.86%)	10	NA	NA
WP_000405832.1|807169_807664_+	GNAT family N-acetyltransferase	NA	M1PSC3	Streptococcus_phage	52.1	1.9e-42
WP_001170347.1|807663_808194_+	methylated-DNA--[protein]-cysteine S-methyltransferase	NA	M1PFU9	Streptococcus_phage	54.3	1.4e-46
WP_000889093.1|808187_808544_+	arsenate reductase family protein	NA	M1PLC0	Streptococcus_phage	57.3	1.2e-33
WP_001103452.1|808701_809502_+	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_000590986.1|809501_810245_+	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	41.0	1.6e-29
WP_000926600.1|810322_810547_+	DUF4059 family protein	NA	NA	NA	NA	NA
WP_000272311.1|810612_811524_+	thioredoxin-disulfide reductase	NA	G3MA85	Bacillus_virus	51.5	2.9e-89
WP_000855734.1|811561_812290_-	23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB	NA	NA	NA	NA	NA
WP_001272941.1|812334_812946_-	peptide deformylase	NA	E3SLL2	Synechococcus_phage	42.4	4.9e-16
WP_000930003.1|813458_814175_+	CapA family protein	NA	A0A0N9SJ77	Staphylococcus_phage	30.9	2.1e-26
>prophage 7
NC_017769	Streptococcus pneumoniae ST556, complete sequence	2150813	927868	990928	2150813	transposase,protease,holin	Indivirus(15.79%)	57	NA	NA
WP_000895725.1|927868_928768_+|protease	zinc metalloprotease HtpX	protease	NA	NA	NA	NA
WP_001814694.1|928811_930338_-	ABC-F family ATP-binding cassette domain-containing protein	NA	F2Y2R6	Organic_Lake_phycodnavirus	31.9	1.3e-09
WP_000773235.1|931096_931639_+	DUF177 domain-containing protein	NA	NA	NA	NA	NA
WP_000244451.1|931638_932268_+	endonuclease III	NA	NA	NA	NA	NA
WP_000850024.1|932478_933000_+	bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase PyrR	NA	NA	NA	NA	NA
WP_001293845.1|933018_933942_+	aspartate carbamoyltransferase catalytic subunit	NA	M1HGA5	Paramecium_bursaria_Chlorella_virus	31.7	8.7e-25
WP_000166701.1|933991_935071_+	glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit	NA	R4TGJ8	Halovirus	35.9	6.3e-59
WP_001126406.1|935383_938560_+	carbamoyl-phosphate synthase large subunit	NA	NA	NA	NA	NA
WP_001199645.1|938834_939644_-|holin	phosphorylcholine transferase LicD	holin	A0A1V0SD50	Indivirus	30.3	4.5e-09
WP_000811992.1|939645_940449_-|holin	phosphorylcholine transferase LicD	holin	A0A1V0SD50	Indivirus	27.1	5.3e-10
WP_000835917.1|940458_941946_-	type IV teichoic acid flippase TacF	NA	NA	NA	NA	NA
WP_000638502.1|942281_942989_+	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	NA	NA	NA	NA	NA
WP_000609885.1|942993_944016_+	alcohol dehydrogenase catalytic domain-containing protein	NA	NA	NA	NA	NA
WP_000411215.1|944032_944902_+|holin	choline kinase LicA	holin	NA	NA	NA	NA
WP_000837618.1|944891_945770_+	DMT family transporter	NA	NA	NA	NA	NA
WP_000643970.1|945781_946471_+	NTP transferase domain-containing protein	NA	A0A127AW70	Bacillus_phage	45.0	3.4e-05
WP_000705301.1|946566_947415_+	DNA-protecting protein DprA	NA	S6BFL3	Thermus_phage	39.1	1.2e-33
WP_001812883.1|948296_949340_+	TIGR00341 family protein	NA	NA	NA	NA	NA
WP_000179644.1|949506_951594_+	type I DNA topoisomerase	NA	A0A1V0SCS0	Indivirus	37.6	1.0e-105
WP_001237223.1|951699_952059_+	YbaN family protein	NA	NA	NA	NA	NA
WP_000638786.1|952151_952784_+	copper homeostasis protein CutC	NA	NA	NA	NA	NA
WP_000461600.1|952827_953484_+	MmcQ/YjbR family DNA-binding protein	NA	NA	NA	NA	NA
WP_001010953.1|953502_954135_+	2-isopropylmalate synthase	NA	NA	NA	NA	NA
WP_000225489.1|954162_954597_+	DNA topoisomerase I	NA	NA	NA	NA	NA
WP_001074730.1|954608_955646_+	3-isopropylmalate dehydrogenase	NA	NA	NA	NA	NA
WP_000762426.1|955642_955912_+	DUF1294 domain-containing protein	NA	NA	NA	NA	NA
WP_000929149.1|955915_956275_+	3-isopropylmalate dehydratase small subunit	NA	NA	NA	NA	NA
WP_001042415.1|957225_959157_+	McrB family protein	NA	K4I1H4	Acidithiobacillus_phage	33.7	1.8e-16
WP_001816429.1|959143_960460_+	McrC family protein	NA	NA	NA	NA	NA
WP_000931158.1|960634_961621_+	GMP reductase	NA	G3MBI2	Bacillus_virus	72.2	1.4e-137
WP_000661503.1|961938_962637_+	ribonuclease III	NA	J2YAN1	Acanthamoeba_polyphaga_lentillevirus	33.3	1.1e-24
WP_000280942.1|962627_966167_+	chromosome segregation protein SMC	NA	NA	NA	NA	NA
WP_000153016.1|966163_966958_+	Cof-type HAD-IIB family hydrolase	NA	NA	NA	NA	NA
WP_000763457.1|966957_967776_+	Cof-type HAD-IIB family hydrolase	NA	NA	NA	NA	NA
WP_000522312.1|967779_969069_+	signal recognition particle-docking protein FtsY	NA	NA	NA	NA	NA
WP_000096139.1|969112_970600_-	glucose-6-phosphate dehydrogenase	NA	H6WFS4	Cyanophage	33.0	4.9e-70
WP_001096313.1|970748_971489_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	40.1	2.0e-32
WP_000726258.1|971488_973654_-	ABC transporter substrate-binding protein/permease	NA	NA	NA	NA	NA
WP_000792112.1|973823_974777_+|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_000610410.1|974853_976842_+	excinuclease ABC subunit B	NA	NA	NA	NA	NA
WP_000639833.1|976851_977415_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_000237188.1|977380_977869_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_000091545.1|977941_978409_+	8-oxo-dGTP diphosphatase	NA	NA	NA	NA	NA
WP_000159178.1|978405_978921_-	transcription repressor NadR	NA	NA	NA	NA	NA
WP_001097402.1|978932_979460_-	ECF transporter S component	NA	NA	NA	NA	NA
WP_000747408.1|979741_980305_-	ECF transporter S component	NA	NA	NA	NA	NA
WP_001284130.1|980288_980840_-	phosphopantothenoylcysteine decarboxylase	NA	A0A068EHP1	Penguinpox_virus	37.6	5.2e-25
WP_000699489.1|980851_981541_-	phosphopantothenate--cysteine ligase	NA	NA	NA	NA	NA
WP_000845287.1|981770_983441_+	formate--tetrahydrofolate ligase	NA	NA	NA	NA	NA
WP_000886147.1|983769_984945_+	A/G-specific adenine glycosylase	NA	NA	NA	NA	NA
WP_000722076.1|984999_985704_+	response regulator transcription factor	NA	W8CYM9	Bacillus_phage	39.8	2.8e-39
WP_000886210.1|985696_987046_+	cell wall metabolism sensor histidine kinase VicK	NA	W8CYF6	Bacillus_phage	34.6	1.8e-34
WP_001289493.1|987047_987857_+	MBL fold metallo-hydrolase	NA	A0A0C5AFC1	Paenibacillus_phage	39.0	1.8e-34
WP_000208080.1|987947_988190_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001812387.1|988191_988446_+	type II toxin-antitoxin system RelE/ParE family toxin	NA	NA	NA	NA	NA
WP_000731129.1|988492_989266_+	ion transporter	NA	A0A1B0Y2S3	Lactobacillus_phage	48.6	8.9e-23
WP_001814919.1|989581_990928_-|transposase	IS1380-like element ISSpn5 family transposase	transposase	A0A1X9I6F6	Streptococcus_phage	40.0	4.5e-78
>prophage 8
NC_017769	Streptococcus pneumoniae ST556, complete sequence	2150813	1236886	1290674	2150813	integrase,tRNA,bacteriocin,holin,protease,transposase	Streptococcus_phage(44.44%)	45	1241252:1241296	1294336:1294380
WP_000083726.1|1236886_1238221_-|tRNA	methylenetetrahydrofolate--tRNA-(uracil(54)- C(5))-methyltransferase (FADH(2)-oxidizing) TrmFO	tRNA	NA	NA	NA	NA
WP_001166874.1|1238407_1239286_-	16S rRNA (cytidine(1402)-2'-O)-methyltransferase	NA	M1PLC5	Streptococcus_phage	75.7	1.7e-115
WP_000358228.1|1239288_1239606_-	DNA replication initiation control protein YabA	NA	M1PFV3	Streptococcus_phage	60.0	2.9e-28
WP_000806706.1|1239645_1240536_-	DNA polymerase III subunit delta'	NA	M1NSC1	Streptococcus_phage	51.4	1.4e-72
WP_000033363.1|1240532_1241171_-	dTMP kinase	NA	M1PSC7	Streptococcus_phage	67.6	2.2e-75
1241252:1241296	attL	ATACTCAATGAAAATCAAAGAGCAAACTAGGAAGCTAGCCGCAGG	NA	NA	NA	NA
WP_000689709.1|1241390_1242188_-	pyrroline-5-carboxylate reductase	NA	A0A1X9I6T5	Streptococcus_phage	50.6	2.7e-59
WP_000254686.1|1242191_1243454_-	glutamate-5-semialdehyde dehydrogenase	NA	A0A1X9I5D4	Streptococcus_phage	64.5	2.5e-139
WP_001844793.1|1243463_1244594_-	glutamate 5-kinase	NA	A0A1X9I5D0	Streptococcus_phage	58.4	1.1e-114
WP_000728251.1|1244673_1246557_-|holin	phosphorylcholine esterase CbpE	holin	Q332B9	Clostridium_botulinum_C_phage	23.7	7.3e-10
WP_000403195.1|1246559_1247447_-	RluA family pseudouridine synthase	NA	A0A2H4UV25	Bodo_saltans_virus	28.0	1.3e-09
WP_000745389.1|1247436_1247898_-	signal peptidase II	NA	NA	NA	NA	NA
WP_001025704.1|1247894_1248803_-	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	27.7	3.1e-06
WP_001809535.1|1248795_1248993_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_000745372.1|1249044_1249716_-|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_000602451.1|1249769_1249991_-|bacteriocin	SP_0924 family bacteriocin-like peptide	bacteriocin	NA	NA	NA	NA
WP_000593571.1|1250262_1251072_+	Cof-type HAD-IIB family hydrolase	NA	NA	NA	NA	NA
WP_001246755.1|1251252_1252128_-	N-carbamoylputrescine amidase	NA	M1H5W0	Paramecium_bursaria_Chlorella_virus	50.0	1.1e-77
WP_000969458.1|1252137_1253223_-	agmatine deiminase	NA	M1HES8	Acanthocystis_turfacea_Chlorella_virus	48.1	2.8e-91
WP_000764377.1|1253219_1254347_-	carboxynorspermidine decarboxylase	NA	NA	NA	NA	NA
WP_000088782.1|1254346_1255606_-	saccharopine dehydrogenase family protein	NA	NA	NA	NA	NA
WP_000366713.1|1255602_1256463_-	polyamine aminopropyltransferase	NA	NA	NA	NA	NA
WP_001270407.1|1256493_1256631_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000661006.1|1257398_1258874_-	aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
WP_001153814.1|1259580_1260456_+|transposase	IS30 family transposase	transposase	H7BWC8	unidentified_phage	31.3	8.0e-28
WP_029645384.1|1260451_1261030_+	VIT1/CCC1 transporter family protein	NA	NA	NA	NA	NA
WP_000489404.1|1261072_1263061_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_000173358.1|1263062_1263821_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	36.3	7.7e-27
WP_000680766.1|1264248_1264440_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001085044.1|1264793_1265066_-	PspC domain-containing protein	NA	NA	NA	NA	NA
WP_000778595.1|1265124_1265574_-	SprT family protein	NA	NA	NA	NA	NA
WP_000359141.1|1265560_1267690_-	RNA-binding transcriptional accessory protein	NA	NA	NA	NA	NA
WP_000123624.1|1268101_1269007_+	permease	NA	NA	NA	NA	NA
WP_000617835.1|1269003_1269819_+	TIGR03943 family protein	NA	NA	NA	NA	NA
WP_000759775.1|1269948_1270665_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_000749599.1|1271613_1272486_-	DUF4300 family protein	NA	NA	NA	NA	NA
WP_001814919.1|1273997_1275344_+|transposase	IS1380-like element ISSpn5 family transposase	transposase	A0A1X9I6F6	Streptococcus_phage	40.0	4.5e-78
WP_001042807.1|1275846_1277352_-	pyruvate kinase	NA	NA	NA	NA	NA
WP_000820852.1|1277410_1278418_-	6-phosphofructokinase	NA	NA	NA	NA	NA
WP_000561516.1|1278500_1281602_-	DNA polymerase III subunit alpha	NA	A0A291AWR1	Streptomyces_phage	32.8	6.8e-114
WP_001212037.1|1281948_1284222_+	Xaa-Pro dipeptidyl-peptidase	NA	NA	NA	NA	NA
WP_001043000.1|1284238_1284709_+	arginine repressor	NA	NA	NA	NA	NA
WP_000692989.1|1284825_1284981_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000526343.1|1285251_1288602_-	DEAD/DEAH box helicase family protein	NA	A0A2H4P9W3	Gordonia_phage	24.8	1.4e-11
WP_000756225.1|1288631_1289675_-	restriction endonuclease subunit S	NA	NA	NA	NA	NA
WP_000444456.1|1289708_1290674_-|integrase	tyrosine-type recombinase/integrase	integrase	A0A2H4JAA2	uncultured_Caudovirales_phage	29.6	1.8e-33
1294336:1294380	attR	CCTGCGGCTAGCTTCCTAGTTTGCTCTTTGATTTTCATTGAGTAT	NA	NA	NA	NA
>prophage 9
NC_017769	Streptococcus pneumoniae ST556, complete sequence	2150813	1473655	1480409	2150813	protease	Streptococcus_phage(50.0%)	9	NA	NA
WP_000081004.1|1473655_1474624_+	NAD(P)/FAD-dependent oxidoreductase	NA	Q9JRK7	Streptococcus_phage	99.2	1.8e-65
WP_000011306.1|1474657_1475569_-	DNA-binding protein WhiA	NA	Q7AWZ3	Streptococcus_phage	99.7	1.5e-154
WP_001231086.1|1475565_1476543_-	YvcK family protein	NA	A1IMD5	Streptococcus_phage	100.0	1.2e-184
WP_000163057.1|1476539_1477430_-	RNase adapter RapZ	NA	A0A0R8VB27	Thermobifida_phage	29.8	3.9e-06
WP_001140420.1|1477481_1477862_-	RidA family protein	NA	NA	NA	NA	NA
WP_000422605.1|1477872_1478460_-	YihA family ribosome biogenesis GTP-binding protein	NA	NA	NA	NA	NA
WP_000106341.1|1478468_1479701_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	protease	G3M9Z9	Bacillus_virus	59.2	8.4e-132
WP_000442276.1|1479732_1479903_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000162444.1|1479902_1480409_-	dihydrofolate reductase	NA	G3MBI7	Bacillus_virus	42.5	3.9e-27
>prophage 10
NC_017769	Streptococcus pneumoniae ST556, complete sequence	2150813	1734911	1742242	2150813		uncultured_Mediterranean_phage(33.33%)	9	NA	NA
WP_001814725.1|1734911_1735631_+	UDP-glucose 4-epimerase GalE	NA	A0A2K9L1R4	Tupanvirus	36.2	4.7e-34
WP_000778475.1|1736034_1736994_+	ABC transporter permease	NA	A0A2H4IY97	uncultured_Caudovirales_phage	40.8	2.4e-57
WP_001193665.1|1736983_1737940_+	iron chelate uptake ABC transporter family permease subunit	NA	NA	NA	NA	NA
WP_000764303.1|1737936_1738689_+	ATP-binding cassette domain-containing protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	28.1	5.6e-14
WP_000858251.1|1738784_1739750_+	siderophore ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_000821615.1|1739974_1740217_-	membrane protein insertion efficiency factor YidD	NA	A0A2H4PQM5	Staphylococcus_phage	59.4	7.8e-18
WP_001222228.1|1740216_1740939_-	rRNA pseudouridine synthase	NA	NA	NA	NA	NA
WP_000105310.1|1740925_1741495_-	segregation/condensation protein B	NA	A0A1B1IVT7	uncultured_Mediterranean_phage	34.9	5.0e-15
WP_000351913.1|1741513_1742242_-	segregation/condensation protein A	NA	A0A1B1IVW1	uncultured_Mediterranean_phage	22.3	4.1e-09
>prophage 11
NC_017769	Streptococcus pneumoniae ST556, complete sequence	2150813	1823684	1850256	2150813	integrase,bacteriocin	Streptococcus_phage(92.0%)	29	1815384:1815399	1852800:1852815
1815384:1815399	attL	AATAATCACTGCACCA	NA	NA	NA	NA
WP_000420682.1|1823684_1823999_+	YdcP family protein	NA	A0A1S5SF38	Streptococcus_phage	100.0	5.2e-54
WP_000985015.1|1824014_1824401_+	YdcP family protein	NA	A0A1S5SF96	Streptococcus_phage	100.0	3.0e-64
WP_000813488.1|1824429_1825815_+	DNA translocase FtsK	NA	A0A1S5SFB5	Streptococcus_phage	100.0	1.1e-265
WP_000879507.1|1825817_1825970_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000398284.1|1825992_1827198_+	replication initiation factor domain-containing protein	NA	A0A1S5SEX3	Streptococcus_phage	100.0	2.8e-233
WP_001009056.1|1827240_1827462_+	hypothetical protein	NA	A0A1S5SEY0	Streptococcus_phage	100.0	4.3e-31
WP_000342539.1|1827578_1828076_+	antirestriction protein ArdA	NA	A0A1S5SF25	Streptococcus_phage	100.0	1.7e-91
WP_000506270.1|1828050_1828557_+	conjugal transfer protein	NA	A0A1S5SEX7	Streptococcus_phage	100.0	8.6e-91
WP_000331160.1|1828540_1830988_+	ATP-binding protein	NA	A0A1S5SF64	Streptococcus_phage	100.0	0.0e+00
WP_001814875.1|1830990_1833168_+	membrane protein	NA	A0A1S5SF30	Streptococcus_phage	98.6	0.0e+00
WP_000769868.1|1833164_1834166_+	bifunctional lysozyme/C40 family peptidase	NA	A0A1S5SEZ8	Streptococcus_phage	100.0	5.0e-191
WP_001224318.1|1834162_1835095_+	conjugal transfer protein	NA	A0A1S5SF22	Streptococcus_phage	99.4	3.1e-171
WP_001814923.1|1835339_1835456_+	tetracycline resistance determinant leader peptide	NA	NA	NA	NA	NA
WP_000691729.1|1835471_1837391_+	tetracycline resistance ribosomal protection protein Tet(M)	NA	A0A1S5SF82	Streptococcus_phage	97.3	0.0e+00
WP_001813542.1|1837754_1838000_+	hypothetical protein	NA	A0A1B0RXA7	Streptococcus_phage	98.8	2.6e-37
WP_000806926.1|1837996_1838332_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000567222.1|1838344_1838713_+	hypothetical protein	NA	A0A1B0RXA8	Streptococcus_phage	97.5	1.1e-58
WP_001072467.1|1838699_1838999_+	hypothetical protein	NA	A0A1B0RX98	Streptococcus_phage	96.0	1.8e-48
WP_000420313.1|1839116_1840580_-	ABC-F type ribosomal protection protein Msr(D)	NA	A0A1B0RXA0	Streptococcus_phage	97.3	3.7e-251
WP_000417519.1|1840699_1841917_-	macrolide efflux MFS transporter Mef(A)	NA	A0A2K5B2B5	Erysipelothrix_phage	90.6	5.1e-198
WP_000873143.1|1842302_1842473_-	hypothetical protein	NA	A0A1X9I6E4	Streptococcus_phage	98.2	3.7e-22
WP_001860868.1|1842994_1843186_+	cysteine-rich KTR domain-containing protein	NA	D0R0F6	Streptococcus_phage	69.4	5.4e-14
WP_001227347.1|1843245_1843599_-	helix-turn-helix domain-containing protein	NA	A0A1S5SFA6	Streptococcus_phage	100.0	1.3e-58
WP_000804885.1|1844103_1844526_+	sigma-70 family RNA polymerase sigma factor	NA	A0A1S5SEW0	Streptococcus_phage	100.0	2.5e-72
WP_000857133.1|1844522_1844753_+	helix-turn-helix domain-containing protein	NA	A0A1S5SEX1	Streptococcus_phage	100.0	2.7e-36
WP_000814511.1|1845213_1845417_+	excisionase	NA	A0A1S5SF07	Streptococcus_phage	100.0	4.0e-31
WP_001291561.1|1845498_1846716_+|integrase	tyrosine-type recombinase/integrase	integrase	A0A1S5SEW7	Streptococcus_phage	100.0	3.7e-233
WP_000732395.1|1847606_1849622_+|bacteriocin	bacteriocin-associated integral membrane family protein	bacteriocin	NA	NA	NA	NA
WP_000571425.1|1849623_1850256_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	32.9	2.8e-22
1852800:1852815	attR	AATAATCACTGCACCA	NA	NA	NA	NA
>prophage 12
NC_017769	Streptococcus pneumoniae ST556, complete sequence	2150813	2129194	2137948	2150813		Streptococcus_phage(33.33%)	9	NA	NA
WP_000510412.1|2129194_2130034_-	energy-coupling factor transporter ATPase	NA	W8CYL7	Bacillus_phage	32.6	1.1e-15
WP_000835715.1|2130018_2130846_-	energy-coupling factor transporter ATPase	NA	G9BWD6	Planktothrix_phage	32.9	2.8e-22
WP_000712136.1|2130842_2131388_-	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_001227958.1|2131398_2132220_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_000170193.1|2132261_2133545_-	insulinase family protein	NA	A0A1E1EST3	Acanthamoeba_castellanii_mimivirus	29.5	7.1e-17
WP_000424257.1|2133541_2134792_-	insulinase family protein	NA	A0A1X9I714	Streptococcus_phage	42.1	6.0e-93
WP_000455903.1|2134950_2135319_+	S4 domain-containing protein YaaA	NA	A0A1X9I5V8	Streptococcus_phage	57.3	7.0e-18
WP_000266662.1|2135321_2136419_+	DNA replication/repair protein RecF	NA	NA	NA	NA	NA
WP_000073428.1|2136469_2137948_-	IMP dehydrogenase	NA	A0A1V0SHK8	Klosneuvirus	40.5	2.2e-94
