The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NC_016944	Vibrio cholerae IEC224 chromosome I, complete sequence	3007450	547227	555845	3007450	tRNA,transposase,integrase	Vibrio_phage(33.33%)	7	548307:548319	554954:554966
WP_100068541.1|547227_548404_+|transposase	IS3 family transposase	transposase	Q716C2	Shigella_phage	65.1	8.6e-118
548307:548319	attL	AGCCAGCTCAGGC	NA	NA	NA	NA
WP_001129565.1|548440_549682_-|integrase	tyrosine-type recombinase/integrase	integrase	A0A1V0E8G8	Vibrio_phage	47.3	9.1e-110
WP_000372618.1|550067_551945_-	RNA polymerase sigma factor RpoD	NA	A0A2I7SAT0	Vibrio_phage	32.9	1.5e-34
WP_000907210.1|552043_553807_-	DNA primase	NA	A0A1S5RG58	Helicobacter_phage	30.7	1.1e-44
WP_001173892.1|553896_554340_-	GatB/YqeY domain-containing protein	NA	A0A292GL36	Xanthomonas_phage	49.3	3.7e-29
WP_001145625.1|554369_554585_-	30S ribosomal protein S21	NA	NA	NA	NA	NA
WP_001220122.1|554825_555845_+|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	tRNA	A0A0R6PI74	Moraxella_phage	57.4	2.6e-107
554954:554966	attR	GCCTGAGCTGGCT	NA	NA	NA	NA
>prophage 2
NC_016944	Vibrio cholerae IEC224 chromosome I, complete sequence	3007450	562014	569238	3007450		uncultured_Mediterranean_phage(33.33%)	6	NA	NA
WP_000698379.1|562014_562767_+	5'/3'-nucleotidase SurE	NA	A0A1B1ITZ2	uncultured_Mediterranean_phage	53.3	8.0e-69
WP_000002982.1|562759_563386_+	protein-L-isoaspartate(D-aspartate) O-methyltransferase	NA	A0A1B1IU40	uncultured_Mediterranean_phage	52.1	2.0e-36
WP_000177568.1|563385_564321_+	murein hydrolase activator NlpD	NA	D7RWE0	Brochothrix_phage	34.7	7.8e-05
WP_000116737.1|564394_565402_+	RNA polymerase sigma factor RpoS	NA	F4YCU2	Synechococcus_phage	34.2	6.0e-35
WP_001894770.1|565494_568083_-	DNA mismatch repair protein MutS	NA	A0A1V0SC35	Catovirus	23.0	2.2e-33
WP_001279365.1|568350_569238_-	cysteine synthase CysM	NA	A0A1X9I5K7	Streptococcus_phage	41.1	4.1e-56
>prophage 3
NC_016944	Vibrio cholerae IEC224 chromosome I, complete sequence	3007450	798217	805410	3007450		Faustovirus(16.67%)	9	NA	NA
WP_000775253.1|798217_799432_+	IscS subfamily cysteine desulfurase	NA	A0A0H3TPH2	Faustovirus	30.5	1.1e-32
WP_000331703.1|799468_799852_+	Fe-S cluster assembly scaffold IscU	NA	A0A218MKD1	uncultured_virus	78.2	5.4e-53
WP_000301571.1|799912_800236_+	iron-sulfur cluster assembly protein IscA	NA	A0A2H4N7N5	Lake_Baikal_phage	50.5	3.0e-25
WP_001105747.1|800284_800800_+	co-chaperone HscB	NA	NA	NA	NA	NA
WP_001196560.1|800823_802674_+	Fe-S protein assembly chaperone HscA	NA	A0A0N9QXN8	Chrysochromulina_ericina_virus	41.1	5.3e-106
WP_001124187.1|802687_803026_+	ISC system 2Fe-2S type ferredoxin	NA	NA	NA	NA	NA
WP_000872176.1|803074_803269_+	Fe-S cluster assembly protein IscX	NA	NA	NA	NA	NA
WP_000107237.1|803488_804778_+	aminopeptidase PepB	NA	Q6GYZ8	Mycoplasma_phage	34.3	1.7e-34
WP_001162850.1|804981_805410_+	nucleoside-diphosphate kinase	NA	D2E8E1	Anguillid_herpesvirus	38.4	1.0e-20
>prophage 4
NC_016944	Vibrio cholerae IEC224 chromosome I, complete sequence	3007450	1543785	1630391	3007450	coat,head,transposase,capsid,protease,portal,terminase,tail	Vibrio_phage(45.71%)	74	NA	NA
WP_149591715.1|1543785_1545891_-	RTX toxin T1SS ABC transporter subunit RtxB	NA	W8CYL7	Bacillus_phage	27.1	4.9e-39
WP_001906284.1|1546317_1546665_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001881196.1|1546690_1547152_+	RTX toxin-activating lysine-acyltransferase RtxC	NA	NA	NA	NA	NA
WP_000517826.1|1547175_1560813_+	MARTX multifunctional-autoprocessing repeats-in-toxin holotoxin RtxA	NA	B3Y8K3	Vibrio_virus	100.0	8.4e-07
WP_000053920.1|1561180_1561405_-	RstC protein	NA	U5TMI6	Satellite_phage	100.0	1.1e-34
WP_001911551.1|1561498_1561849_-	hypothetical protein	NA	U5TMH5	Satellite_phage	100.0	1.0e-63
WP_000743997.1|1561850_1562930_-	replication initiation factor domain-containing protein	NA	U5TQR3	Satellite_phage	100.0	2.2e-213
WP_000693566.1|1563055_1563394_+	helix-turn-helix transcriptional regulator	NA	U5TNA1	Satellite_phage	100.0	7.3e-54
WP_000593522.1|1563995_1564370_-	cholera enterotoxin binding subunit CtxB	NA	Q77DH7	Vibrio_virus	100.0	7.8e-65
WP_001881225.1|1564366_1565143_-	cholera enterotoxin catalytic subunit CtxA	NA	A0A142I6Y0	Vibrio_phage	100.0	1.3e-151
WP_000021616.1|1565241_1566441_-	zonula occludens toxin ZOT	NA	A0A142I6Z1	Vibrio_phage	100.0	5.3e-240
WP_000979342.1|1566437_1566731_-	accessory cholera enterotoxin	NA	A0A0F6YNQ7	Vibrio_phage	100.0	3.7e-46
WP_001268534.1|1566727_1567915_-|coat	minor coat protein pIII	coat	A0A142I701	Vibrio_phage	100.0	1.4e-200
WP_000493022.1|1568021_1568270_-	colonization factor	NA	A0A0N7F140	Vibrio_phage	100.0	8.8e-33
WP_000842207.1|1568405_1568762_-	hypothetical protein	NA	A0A0N9HJ67	Vibrio_phage	100.0	9.7e-65
WP_000743997.1|1568763_1569843_-	replication initiation factor domain-containing protein	NA	U5TQR3	Satellite_phage	100.0	2.2e-213
WP_000693566.1|1569968_1570307_+	helix-turn-helix transcriptional regulator	NA	U5TNA1	Satellite_phage	100.0	7.3e-54
WP_000170634.1|1570796_1571381_-	DNA-binding protein	NA	E3U9I9	Vibrio_phage	100.0	6.4e-114
WP_001161489.1|1571373_1571541_-	hypothetical protein	NA	E3U9J0	Vibrio_phage	100.0	2.3e-13
WP_001052672.1|1571618_1572311_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_000512956.1|1572440_1572710_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001881266.1|1572729_1574298_-	replication protein	NA	A7BJY2	Enterobacteria_phage	32.3	2.7e-58
WP_000005769.1|1574474_1575026_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_001161489.1|1576224_1576392_-	hypothetical protein	NA	E3U9J0	Vibrio_phage	100.0	2.3e-13
WP_001052672.1|1576469_1577162_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_000512956.1|1577291_1577561_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001881266.1|1577580_1579149_-	replication protein	NA	A7BJY2	Enterobacteria_phage	32.3	2.7e-58
WP_000005769.1|1579325_1579877_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_156991674.1|1580221_1581407_+|transposase	IS3-like element ISVch4 family transposase	transposase	Q716C2	Shigella_phage	65.1	1.5e-117
WP_000948761.1|1582316_1582628_-	hypothetical protein	NA	E3U9J1	Vibrio_phage	100.0	6.6e-09
WP_001918575.1|1582786_1583104_-	DUF3634 family protein	NA	NA	NA	NA	NA
WP_000877146.1|1583123_1583573_-	macrodomain Ter protein MatP	NA	NA	NA	NA	NA
WP_000194428.1|1583736_1585386_+|protease	Lon protease family protein	protease	NA	NA	NA	NA
WP_001180252.1|1585450_1585969_+	bifunctional 3-hydroxydecanoyl-ACP dehydratase/trans-2-decenoyl-ACP isomerase	NA	NA	NA	NA	NA
WP_001881287.1|1586051_1586225_-	ribosome modulation factor	NA	NA	NA	NA	NA
WP_000087036.1|1586392_1588087_-	DUF3466 family protein	NA	NA	NA	NA	NA
WP_001174034.1|1588092_1590012_-	ABC transporter ATP-binding protein	NA	A0A2K9L3Z8	Tupanvirus	29.7	7.6e-55
WP_000631987.1|1589989_1590232_-	glutaredoxin family protein	NA	NA	NA	NA	NA
WP_001077794.1|1590240_1592367_-	bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL	NA	NA	NA	NA	NA
WP_000917529.1|1592826_1593369_-	cell division protein ZapC	NA	NA	NA	NA	NA
WP_000966885.1|1593523_1594534_-	quinone-dependent dihydroorotate dehydrogenase	NA	NA	NA	NA	NA
WP_000126926.1|1594607_1599449_-	NAD-glutamate dehydrogenase	NA	NA	NA	NA	NA
WP_001110339.1|1599637_1599856_-	DUF2835 domain-containing protein	NA	NA	NA	NA	NA
WP_000377996.1|1599907_1602532_-	aminopeptidase N	NA	NA	NA	NA	NA
WP_001994019.1|1602604_1602841_-	ArsR family transcriptional regulator	NA	NA	NA	NA	NA
WP_001241333.1|1603789_1604302_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001912825.1|1604618_1605884_+	ATP-binding protein	NA	NA	NA	NA	NA
WP_000347185.1|1605885_1606308_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000092362.1|1606371_1606737_-	peptidase M15	NA	A0A2I7RAT1	Vibrio_phage	60.3	8.7e-37
WP_000279700.1|1606720_1607278_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000291407.1|1607277_1608285_-	radical SAM protein	NA	NA	NA	NA	NA
WP_001005176.1|1608301_1608667_-	hypothetical protein	NA	C8ZKF3	Pseudomonas_phage	46.2	1.8e-05
WP_000521739.1|1608667_1614610_-	fibronectin type III domain-containing protein	NA	M4MHT9	Vibrio_phage	30.9	2.0e-98
WP_000491559.1|1614613_1615009_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000168946.1|1615011_1615551_-	hypothetical protein	NA	M4MD40	Vibrio_phage	35.1	4.5e-21
WP_000250920.1|1615561_1616143_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000907543.1|1616144_1618457_-	hypothetical protein	NA	A0A1Q1PW43	Pseudoalteromonas_phage	22.6	4.4e-09
WP_000967642.1|1618473_1618764_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001081280.1|1618808_1619144_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000907300.1|1619196_1619667_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001994025.1|1619680_1620004_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000049624.1|1620051_1620663_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001252475.1|1620649_1620997_-|head,tail	head-tail adaptor protein	head,tail	NA	NA	NA	NA
WP_000020008.1|1621008_1621560_-	hypothetical protein	NA	A0A2I7QU98	Vibrio_phage	28.0	8.9e-09
WP_000667008.1|1621574_1622765_-|capsid	phage major capsid protein	capsid	M4MA06	Vibrio_phage	33.3	1.3e-36
WP_000944879.1|1622863_1623712_-|head,protease	HK97 family phage prohead protease	head,protease	Q6JIM8	Burkholderia_virus	39.1	7.0e-29
WP_000523754.1|1623674_1625000_-|portal	phage portal protein	portal	M4MHV5	Vibrio_phage	38.9	1.2e-75
WP_001070130.1|1625009_1626770_-|terminase	terminase large subunit	terminase	A0A0K1LKI4	Staphylococcus_phage	35.9	1.1e-81
WP_000165579.1|1626960_1627176_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001046237.1|1627203_1627884_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001994028.1|1627880_1628324_-	hypothetical protein	NA	NA	NA	NA	NA
WP_080004477.1|1628466_1628877_-|terminase	phage terminase small subunit P27 family	terminase	A0A1W6JP17	Morganella_phage	31.6	5.8e-05
WP_000243876.1|1629347_1629536_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000858033.1|1629746_1630391_+	antirestriction protein ArdA	NA	G0YPX7	Erwinia_phage	33.5	1.1e-10
>prophage 5
NC_016944	Vibrio cholerae IEC224 chromosome I, complete sequence	3007450	1635046	1642773	3007450		Diadromus_pulchellus_ascovirus(14.29%)	9	NA	NA
WP_001146354.1|1635046_1635634_-	deoxynucleoside kinase	NA	F2NYY4	Diadromus_pulchellus_ascovirus	33.1	2.1e-08
WP_000576446.1|1635653_1635923_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000275003.1|1636127_1636721_-	deoxynucleoside kinase	NA	A0A249Y6S3	Cherax_quadricarinatus_iridovirus	30.0	3.7e-08
WP_000784089.1|1636853_1637111_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001912807.1|1637107_1637392_-	hypothetical protein	NA	A0A142K9B6	Gordonia_phage	51.9	3.9e-08
WP_001044551.1|1637574_1638435_-	exonuclease	NA	F1D0G7	Vibrio_phage	43.0	3.1e-56
WP_000467314.1|1638628_1639060_-	tellurite resistance TerB family protein	NA	Q1MVI3	Enterobacteria_phage	47.9	2.1e-29
WP_000983185.1|1639084_1641139_-	hypothetical protein	NA	A0A0F7DD46	Delftia_phage	40.8	7.1e-144
WP_000046513.1|1641138_1642773_-	toprim domain-containing protein	NA	L7TLT7	Rhizobium_phage	49.0	1.6e-122
>prophage 6
NC_016944	Vibrio cholerae IEC224 chromosome I, complete sequence	3007450	2469074	2475691	3007450		Staphylococcus_phage(66.67%)	7	NA	NA
WP_000864130.1|2469074_2469545_-	6,7-dimethyl-8-ribityllumazine synthase	NA	A0A2H4PQS3	Staphylococcus_phage	48.7	6.8e-34
WP_001122865.1|2469809_2470919_-	bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II	NA	A0A2H4PQS2	Staphylococcus_phage	39.8	6.7e-64
WP_000493874.1|2470959_2471613_-	riboflavin synthase	NA	A0A2H4PQS5	Staphylococcus_phage	38.2	1.2e-31
WP_001131994.1|2471617_2472721_-	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	NA	A0A2H4PQS8	Staphylococcus_phage	33.1	1.3e-43
WP_000543544.1|2472746_2473196_-	transcriptional regulator NrdR	NA	NA	NA	NA	NA
WP_000366574.1|2473295_2474546_-	glutamate-5-semialdehyde dehydrogenase	NA	A0A1X9I5D4	Streptococcus_phage	49.5	5.0e-100
WP_000210573.1|2474557_2475691_-	glutamate 5-kinase	NA	A0A1X9I5D0	Streptococcus_phage	40.4	1.4e-64
