assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000250635.1_ASM25063v1	NC_016940	Saprospira grandis str. Lewin, complete sequence	1	141632-153410	1,1,1,2,2	CRISPRCasFinder,CRT,PILER-CR,PILER-CR,CRT	no		csx1,DEDDh,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas2,cas1,csx19,csx10gr5,csx20,RT,csa3,cas3,cas6,DinG,WYL	Orphan	GTTTCAATGCTGCTTCGCCTGCAAAGGGTTTAGTAT,GTTTCAATGCTGCTTCGCCTGCAA,GTTTCAATGCTGCTTCGCCTGCAATGGGTTTAGTAT,GTTTCAATGCTGCTTCGCCTGCAAAGGGTTTAGTAT,GTTTCAATGCTGCTTCGCCTGCAAAGGGTTTAGTAT	36,24,36,36,36	0	0	NA	NA	NA:NA:NA:NA:NA	165,164,161,161,164	165	Orphan	csx1,DEDDh,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas2,cas1,csx19,csx10gr5,csx20,RT,csa3,cas3,cas6,DinG,WYL	NA|517aa|up_8|NC_016940.1_128951_130502_-,NA|183aa|up_4|NC_016940.1_135578_136127_-,NA|172aa|up_3|NC_016940.1_136211_136727_-,NA|224aa|up_2|NC_016940.1_136821_137493_-,NA|229aa|up_1|NC_016940.1_137665_138352_-,NA|328aa|up_0|NC_016940.1_139569_140553_-,NA|92aa|down_3|NC_016940.1_159056_159332_-,NA|212aa|down_4|NC_016940.1_159331_159967_-,NA|267aa|down_5|NC_016940.1_159979_160780_-	NA|218aa|up_9|NC_016940.1_128037_128691_-	pfam14127, DUF4294, Domain of unknown function (DUF4294)	NA|517aa|up_8|NC_016940.1_128951_130502_-	NA	NA|653aa|up_7|NC_016940.1_130901_132860_+	pfam17899, Peptidase_M61_N, Peptidase M61 N-terminal domain	NA|102aa|up_6|NC_016940.1_132898_133204_+	pfam02575, YbaB_DNA_bd, YbaB/EbfC DNA-binding family	NA|485aa|up_5|NC_016940.1_133214_134669_+	cd13128, MATE_Wzx_like, Wzx, a subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins	NA|183aa|up_4|NC_016940.1_135578_136127_-	NA	NA|172aa|up_3|NC_016940.1_136211_136727_-	NA	NA|224aa|up_2|NC_016940.1_136821_137493_-	NA	NA|229aa|up_1|NC_016940.1_137665_138352_-	NA	NA|328aa|up_0|NC_016940.1_139569_140553_-	NA	NA|538aa|down_0|NC_016940.1_153907_155521_+	PRK05380, pyrG, CTP synthetase; Validated	NA|183aa|down_1|NC_016940.1_155597_156146_-	pfam07610, DUF1573, Protein of unknown function (DUF1573)	NA|844aa|down_2|NC_016940.1_156266_158798_-	pfam14088, DUF4268, Domain of unknown function (DUF4268)	NA|92aa|down_3|NC_016940.1_159056_159332_-	NA	NA|212aa|down_4|NC_016940.1_159331_159967_-	NA	NA|267aa|down_5|NC_016940.1_159979_160780_-	NA	NA|482aa|down_6|NC_016940.1_161009_162455_+	pfam01609, DDE_Tnp_1, Transposase DDE domain	NA|956aa|down_7|NC_016940.1_162676_165544_-	pfam14905, OMP_b-brl_3, Outer membrane protein beta-barrel family	NA|235aa|down_8|NC_016940.1_165607_166312_-	COG3279, LytT, Response regulator of the LytR/AlgR family [Transcription / Signal transduction mechanisms]	NA|353aa|down_9|NC_016940.1_166319_167378_-	COG3275, LytS, Putative regulator of cell autolysis [Signal transduction mechanisms]
GCF_000250635.1_ASM25063v1	NC_016940	Saprospira grandis str. Lewin, complete sequence	2	547628-547781	2	CRISPRCasFinder	no		csx1,DEDDh,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas2,cas1,csx19,csx10gr5,csx20,RT,csa3,cas3,cas6,DinG,WYL	Orphan	GAACGACAACAAGGTCTTTAGACCGCAGTTCGACGACTGAAAGGAGTAACCGCCG	55	0	0	NA	NA	NA	1	1	Orphan	csx1,DEDDh,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas2,cas1,csx19,csx10gr5,csx20,RT,csa3,cas3,cas6,DinG,WYL	NA|588aa|up_9|NC_016940.1_532830_534594_-,NA|259aa|up_5|NC_016940.1_538468_539245_-,NA|460aa|up_3|NC_016940.1_540961_542341_-,NA|82aa|up_1|NC_016940.1_545935_546181_+,NA|274aa|up_0|NC_016940.1_546512_547334_-,NA|213aa|down_2|NC_016940.1_551745_552384_+	NA|588aa|up_9|NC_016940.1_532830_534594_-	NA	NA|379aa|up_8|NC_016940.1_534768_535905_+	pfam01266, DAO, FAD dependent oxidoreductase	NA|336aa|up_7|NC_016940.1_536204_537212_-	COG1480, COG1480, Predicted membrane-associated HD superfamily hydrolase [General function prediction only]	NA|289aa|up_6|NC_016940.1_537392_538259_-	pfam01471, PG_binding_1, Putative peptidoglycan binding domain	NA|259aa|up_5|NC_016940.1_538468_539245_-	NA	NA|341aa|up_4|NC_016940.1_539456_540479_+	PRK00035, hemH, ferrochelatase; Reviewed	NA|460aa|up_3|NC_016940.1_540961_542341_-	NA	NA|576aa|up_2|NC_016940.1_542486_544214_+	TIGR00815, Sulfate_transporter, high affinity sulphate transporter 1	NA|82aa|up_1|NC_016940.1_545935_546181_+	NA	NA|274aa|up_0|NC_016940.1_546512_547334_-	NA	NA|859aa|down_0|NC_016940.1_547850_550427_+	PRK05560, PRK05560, DNA gyrase subunit A; Validated	NA|355aa|down_1|NC_016940.1_550510_551575_+	pfam02606, LpxK, Tetraacyldisaccharide-1-P 4'-kinase	NA|213aa|down_2|NC_016940.1_551745_552384_+	NA	NA|243aa|down_3|NC_016940.1_552708_553437_+	COG3597, COG3597, Uncharacterized protein/domain associated with GTPases [Function unknown]	NA|310aa|down_4|NC_016940.1_553671_554601_+	COG1721, COG1721, Uncharacterized conserved protein (some members contain a von Willebrand factor type A (vWA) domain) [General function prediction only]	NA|661aa|down_5|NC_016940.1_554807_556790_+	cd07185, OmpA_C-like, Peptidoglycan binding domains similar to the C-terminal domain of outer-membrane protein OmpA	NA|329aa|down_6|NC_016940.1_556791_557778_+	pfam04536, TPM_phosphatase, TPM domain	NA|153aa|down_7|NC_016940.1_557779_558238_-	COG4270, COG4270, Predicted membrane protein [Function unknown]	NA|191aa|down_8|NC_016940.1_558314_558887_-	COG0664, Crp, cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms]	NA|268aa|down_9|NC_016940.1_559632_560436_+	PRK05716, PRK05716, methionine aminopeptidase; Validated
GCF_000250635.1_ASM25063v1	NC_016940	Saprospira grandis str. Lewin, complete sequence	3	627403-627503	3	CRISPRCasFinder	no		csx1,DEDDh,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas2,cas1,csx19,csx10gr5,csx20,RT,csa3,cas3,cas6,DinG,WYL	Orphan	GCGACAACCAGCCCCAAAGGGGCGCCAGTTCGA	33	0	0	NA	NA	NA	1	1	Orphan	csx1,DEDDh,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas2,cas1,csx19,csx10gr5,csx20,RT,csa3,cas3,cas6,DinG,WYL	NA|263aa|up_8|NC_016940.1_617933_618722_+,NA|144aa|up_4|NC_016940.1_622713_623145_+,NA|322aa|down_2|NC_016940.1_629275_630241_-,NA|80aa|down_3|NC_016940.1_630422_630662_-	NA|139aa|up_9|NC_016940.1_617459_617876_-	pfam11964, SpoIIAA-like, SpoIIAA-like	NA|263aa|up_8|NC_016940.1_617933_618722_+	NA	NA|270aa|up_7|NC_016940.1_618948_619758_-	cd07987, LPLAT_MGAT-like, Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: MGAT-like	NA|234aa|up_6|NC_016940.1_619916_620618_-	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|557aa|up_5|NC_016940.1_620708_622379_-	cd07436, PHP_PolX, Polymerase and Histidinol Phosphatase domain of bacterial polymerase X	NA|144aa|up_4|NC_016940.1_622713_623145_+	NA	NA|307aa|up_3|NC_016940.1_623770_624691_-	cd00687, Terpene_cyclase_nonplant_C1, Non-plant Terpene Cyclases, Class 1	NA|273aa|up_2|NC_016940.1_624762_625581_-	cd01310, TatD_DNAse, TatD like proteins;  E	NA|383aa|up_1|NC_016940.1_625588_626737_-	pfam03706, LPG_synthase_TM, Lysylphosphatidylglycerol synthase TM region	NA|116aa|up_0|NC_016940.1_626761_627109_-	pfam02261, Asp_decarbox, Aspartate decarboxylase	NA|173aa|down_0|NC_016940.1_627730_628249_+	COG1595, RpoE, DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog [Transcription]	NA|282aa|down_1|NC_016940.1_628253_629099_+	pfam10099, RskA, Anti-sigma-K factor rskA	NA|322aa|down_2|NC_016940.1_629275_630241_-	NA	NA|80aa|down_3|NC_016940.1_630422_630662_-	NA	NA|242aa|down_4|NC_016940.1_630770_631496_-	cd06529, S24_LexA-like, Peptidase S24 LexA-like proteins are involved in the SOS response leading to the repair of single-stranded DNA within the bacterial cell	NA|428aa|down_5|NC_016940.1_631625_632909_-	PRK00077, eno, enolase; Provisional	NA|337aa|down_6|NC_016940.1_633096_634107_-	cd04187, DPM1_like_bac, Bacterial DPM1_like enzymes are related to eukaryotic DPM1	NA|200aa|down_7|NC_016940.1_634123_634723_-	pfam13858, DUF4199, Protein of unknown function (DUF4199)	NA|169aa|down_8|NC_016940.1_634734_635241_-	pfam13858, DUF4199, Protein of unknown function (DUF4199)	NA|336aa|down_9|NC_016940.1_635242_636250_-	PRK12299, obgE, GTPase CgtA; Reviewed
GCF_000250635.1_ASM25063v1	NC_016940	Saprospira grandis str. Lewin, complete sequence	4	768630-768728	4	CRISPRCasFinder	no		csx1,DEDDh,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas2,cas1,csx19,csx10gr5,csx20,RT,csa3,cas3,cas6,DinG,WYL	Orphan	TGCGCCTAGGGACAAGCCCCTAGGC	25	0	0	NA	NA	NA	1	1	Orphan	csx1,DEDDh,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas2,cas1,csx19,csx10gr5,csx20,RT,csa3,cas3,cas6,DinG,WYL	NA|185aa|up_6|NC_016940.1_751826_752381_-,NA|62aa|down_0|NC_016940.1_768873_769059_-	NA|473aa|up_9|NC_016940.1_746127_747546_-	PRK06416, PRK06416, dihydrolipoamide dehydrogenase; Reviewed	NA|178aa|up_8|NC_016940.1_747684_748218_+	pfam04229, GrpB, GrpB protein	NA|987aa|up_7|NC_016940.1_748284_751245_-	TIGR02063, Ribonuclease_R, ribonuclease R	NA|185aa|up_6|NC_016940.1_751826_752381_-	NA	NA|439aa|up_5|NC_016940.1_752516_753833_-	smart00996, AdoHcyase, S-adenosyl-L-homocysteine hydrolase	NA|336aa|up_4|NC_016940.1_753925_754933_-	cd05283, CAD1, Cinnamyl alcohol dehydrogenases (CAD)	NA|197aa|up_3|NC_016940.1_755065_755656_-	COG0545, FkpA, FKBP-type peptidyl-prolyl cis-trans isomerases 1 [Posttranslational modification, protein turnover, chaperones]	NA|240aa|up_2|NC_016940.1_755750_756470_-	COG0545, FkpA, FKBP-type peptidyl-prolyl cis-trans isomerases 1 [Posttranslational modification, protein turnover, chaperones]	NA|840aa|up_1|NC_016940.1_756746_759266_-	PRK05580, PRK05580, primosome assembly protein PriA; Validated	NA|2894aa|up_0|NC_016940.1_759686_768368_+	COG5492, COG5492, Bacterial surface proteins containing Ig-like domains [Cell motility and secretion]	NA|62aa|down_0|NC_016940.1_768873_769059_-	NA	NA|322aa|down_1|NC_016940.1_769468_770434_-	COG0545, FkpA, FKBP-type peptidyl-prolyl cis-trans isomerases 1 [Posttranslational modification, protein turnover, chaperones]	NA|239aa|down_2|NC_016940.1_770453_771170_-	COG0545, FkpA, FKBP-type peptidyl-prolyl cis-trans isomerases 1 [Posttranslational modification, protein turnover, chaperones]	NA|802aa|down_3|NC_016940.1_773458_775864_+	pfam01835, A2M_N, MG2 domain	NA|712aa|down_4|NC_016940.1_776187_778323_-	pfam10459, Peptidase_S46, Peptidase S46	NA|497aa|down_5|NC_016940.1_778526_780017_-	sd00006, TPR, Tetratricopeptide repeat	NA|249aa|down_6|NC_016940.1_780206_780953_-	cd02573, PseudoU_synth_EcTruB, Pseudouridine synthase, Escherichia coli TruB like	NA|445aa|down_7|NC_016940.1_781029_782364_-	cd01992, PP-ATPase, N-terminal domain of predicted ATPase of the PP-loop faimly implicated in cell cycle control [Cell division and chromosome partitioning]	NA|422aa|down_8|NC_016940.1_782625_783891_-	COG2204, AtoC, Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]	NA|360aa|down_9|NC_016940.1_784249_785329_+	TIGR04285, parB-like_partition_protein, nucleoid occlusion protein
GCF_000250635.1_ASM25063v1	NC_016940	Saprospira grandis str. Lewin, complete sequence	5	883567-883687	5	CRISPRCasFinder	no		csx1,DEDDh,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas2,cas1,csx19,csx10gr5,csx20,RT,csa3,cas3,cas6,DinG,WYL	Orphan	AGGGACCTATAATGAACAGTTTAGTAACTGTATT	34	0	0	NA	NA	NA	1	1	Orphan	csx1,DEDDh,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas2,cas1,csx19,csx10gr5,csx20,RT,csa3,cas3,cas6,DinG,WYL	NA|85aa|up_6|NC_016940.1_877703_877958_-,NA|158aa|up_4|NC_016940.1_880269_880743_-,NA|155aa|up_3|NC_016940.1_880806_881271_-,NA|213aa|up_2|NC_016940.1_881270_881909_-,NA|205aa|up_1|NC_016940.1_881912_882527_-,NA|49aa|up_0|NC_016940.1_882652_882799_-,NA|114aa|down_2|NC_016940.1_886021_886363_+	NA|197aa|up_9|NC_016940.1_874284_874875_-	pfam02577, DNase-RNase, Bifunctional nuclease	NA|416aa|up_8|NC_016940.1_875139_876387_-	PRK09311, PRK09311, bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II	NA|402aa|up_7|NC_016940.1_876352_877558_-	cd06439, CESA_like_1, CESA_like_1 is a member of the cellulose synthase (CESA) superfamily	NA|85aa|up_6|NC_016940.1_877703_877958_-	NA	NA|519aa|up_5|NC_016940.1_878071_879628_-	cd04275, ZnMc_pappalysin_like, Zinc-dependent metalloprotease, pappalysin_like subfamily	NA|158aa|up_4|NC_016940.1_880269_880743_-	NA	NA|155aa|up_3|NC_016940.1_880806_881271_-	NA	NA|213aa|up_2|NC_016940.1_881270_881909_-	NA	NA|205aa|up_1|NC_016940.1_881912_882527_-	NA	NA|49aa|up_0|NC_016940.1_882652_882799_-	NA	NA|154aa|down_0|NC_016940.1_884656_885118_+	PRK00326, PRK00326, transcriptional regulator MraZ	NA|303aa|down_1|NC_016940.1_885110_886019_+	PRK00050, PRK00050, 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH	NA|114aa|down_2|NC_016940.1_886021_886363_+	NA	NA|720aa|down_3|NC_016940.1_886372_888532_+	COG0768, FtsI, Cell division protein FtsI/penicillin-binding protein 2 [Cell envelope biogenesis, outer membrane]	NA|492aa|down_4|NC_016940.1_888541_890017_+	PRK00139, murE, UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase; Provisional	NA|350aa|down_5|NC_016940.1_890490_891540_+	sd00033, LRR_RI, leucine-rich repeats, ribonuclease inhibitor (RI)-like subfamily	NA|418aa|down_6|NC_016940.1_891753_893007_+	PRK00108, mraY, phospho-N-acetylmuramoyl-pentapeptide-transferase; Provisional	NA|459aa|down_7|NC_016940.1_893008_894385_+	COG0771, MurD, UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]	NA|389aa|down_8|NC_016940.1_894391_895558_+	TIGR02614, Putative_lipid_II_flippase_FtsW, cell division protein FtsW	NA|362aa|down_9|NC_016940.1_895557_896643_+	PRK00726, murG, undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase; Provisional
GCF_000250635.1_ASM25063v1	NC_016940	Saprospira grandis str. Lewin, complete sequence	6	939969-940049	6	CRISPRCasFinder	no	csx1,csx20	csx1,DEDDh,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas2,cas1,csx19,csx10gr5,csx20,RT,csa3,cas3,cas6,DinG,WYL	Orphan	CAGACCAAGGCCTTCAGGCCGCA	23	1	3	939992-940026|939992-940026|939992-940026	NC_016940.1_2311118-2311152|NC_016940.1_3195414-3195448|NC_016940.1_4050228-4050194	NA	1	1	Orphan	csx1,DEDDh,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas2,cas1,csx19,csx10gr5,csx20,RT,csa3,cas3,cas6,DinG,WYL	NA|758aa|up_8|NC_016940.1_930549_932823_+,NA|158aa|up_3|NC_016940.1_936866_937340_+,NA|189aa|up_2|NC_016940.1_937519_938086_+,NA|50aa|up_1|NC_016940.1_938150_938300_-,csx20|121aa|down_3|NC_016940.1_943417_943780_+,NA|461aa|down_9|NC_016940.1_950136_951519_-	NA|235aa|up_9|NC_016940.1_929539_930244_-	PRK10475, PRK10475, 23S rRNA pseudouridine(2604) synthase RluF	NA|758aa|up_8|NC_016940.1_930549_932823_+	NA	NA|224aa|up_7|NC_016940.1_933182_933854_-	pfam13568, OMP_b-brl_2, Outer membrane protein beta-barrel domain	NA|251aa|up_6|NC_016940.1_933853_934606_-	PRK00216, ubiE, bifunctional demethylmenaquinone methyltransferase/2-methoxy-6-polyprenyl-1,4-benzoquinol methylase UbiE	NA|203aa|up_5|NC_016940.1_934706_935315_+	PRK00454, engB, GTP-binding protein YsxC; Reviewed	NA|441aa|up_4|NC_016940.1_935346_936669_+	cd13133, MATE_like_7, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins	NA|158aa|up_3|NC_016940.1_936866_937340_+	NA	NA|189aa|up_2|NC_016940.1_937519_938086_+	NA	NA|50aa|up_1|NC_016940.1_938150_938300_-	NA	NA|246aa|up_0|NC_016940.1_938440_939178_+	cd11648, RsmI, Ribosomal RNA small subunit methyltransferase I (RsmI), also known as rRNA (cytidine-2'-O-)-methyltransferase	NA|270aa|down_0|NC_016940.1_940234_941044_+	COG1512, COG1512, Beta-propeller domains of methanol dehydrogenase type [General function prediction only]	NA|319aa|down_1|NC_016940.1_941065_942022_+	COG1512, COG1512, Beta-propeller domains of methanol dehydrogenase type [General function prediction only]	csx1|351aa|down_2|NC_016940.1_942346_943399_+	pfam09002, DUF1887, Domain of unknown function (DUF1887)	csx20|121aa|down_3|NC_016940.1_943417_943780_+	NA	NA|211aa|down_4|NC_016940.1_943780_944413_+	pfam01648, ACPS, 4'-phosphopantetheinyl transferase superfamily	NA|597aa|down_5|NC_016940.1_944770_946561_+	PRK00476, aspS, aspartyl-tRNA synthetase; Validated	NA|210aa|down_6|NC_016940.1_946892_947522_+	pfam01613, Flavin_Reduct, Flavin reductase like domain	NA|482aa|down_7|NC_016940.1_947672_949118_-	pfam01609, DDE_Tnp_1, Transposase DDE domain	NA|296aa|down_8|NC_016940.1_949244_950132_-	PRK01911, ppnK, inorganic polyphosphate/ATP-NAD kinase; Provisional	NA|461aa|down_9|NC_016940.1_950136_951519_-	NA
GCF_000250635.1_ASM25063v1	NC_016940	Saprospira grandis str. Lewin, complete sequence	7	997347-997574	3	CRT	no		csx1,DEDDh,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas2,cas1,csx19,csx10gr5,csx20,RT,csa3,cas3,cas6,DinG,WYL	Orphan	TAGGTCGAGCTANNNAAN	18	0	0	NA	NA	NA	5	5	Orphan	csx1,DEDDh,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas2,cas1,csx19,csx10gr5,csx20,RT,csa3,cas3,cas6,DinG,WYL	NA|150aa|up_8|NC_016940.1_975913_976363_-,NA|139aa|up_6|NC_016940.1_978597_979014_-,NA|138aa|up_4|NC_016940.1_980932_981346_-,NA|119aa|up_3|NC_016940.1_981335_981692_-,NA|131aa|up_2|NC_016940.1_981798_982191_-,NA|96aa|down_2|NC_016940.1_1000709_1000997_+	NA|318aa|up_9|NC_016940.1_974273_975227_+	PRK06223, PRK06223, malate dehydrogenase; Reviewed	NA|150aa|up_8|NC_016940.1_975913_976363_-	NA	NA|500aa|up_7|NC_016940.1_976452_977952_-	pfam13488, Gly-zipper_Omp, Glycine zipper	NA|139aa|up_6|NC_016940.1_978597_979014_-	NA	NA|386aa|up_5|NC_016940.1_979021_980179_-	TIGR03696, tRNA_nuclease_WapA, RHS repeat-associated core domain	NA|138aa|up_4|NC_016940.1_980932_981346_-	NA	NA|119aa|up_3|NC_016940.1_981335_981692_-	NA	NA|131aa|up_2|NC_016940.1_981798_982191_-	NA	NA|715aa|up_1|NC_016940.1_982541_984686_-	pfam12770, CHAT, CHAT domain	NA|371aa|up_0|NC_016940.1_984722_985835_-	cd03794, GT4_WbuB-like, Escherichia coli WbuB and similar proteins	NA|228aa|down_0|NC_016940.1_997886_998570_-	pfam13489, Methyltransf_23, Methyltransferase domain	NA|404aa|down_1|NC_016940.1_998569_999781_-	cd05199, SDH_like, Saccharopine Dehydrogenase like proteins	NA|96aa|down_2|NC_016940.1_1000709_1000997_+	NA	NA|44aa|down_3|NC_016940.1_1001196_1001328_+	cd00569, HTH_Hin_like, Helix-turn-helix domain of Hin and related proteins	NA|100aa|down_4|NC_016940.1_1001355_1001655_+	pfam01527, HTH_Tnp_1, Transposase	NA|270aa|down_5|NC_016940.1_1001651_1002461_+	pfam13683, rve_3, Integrase core domain	NA|64aa|down_6|NC_016940.1_1002453_1002645_+	pfam13683, rve_3, Integrase core domain	NA|118aa|down_7|NC_016940.1_1002633_1002987_-	pfam13276, HTH_21, HTH-like domain	NA|96aa|down_8|NC_016940.1_1003054_1003342_-	pfam01527, HTH_Tnp_1, Transposase	NA|95aa|down_9|NC_016940.1_1003395_1003680_-	pfam01527, HTH_Tnp_1, Transposase
GCF_000250635.1_ASM25063v1	NC_016940	Saprospira grandis str. Lewin, complete sequence	8	1076334-1076428	7	CRISPRCasFinder	no		csx1,DEDDh,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas2,cas1,csx19,csx10gr5,csx20,RT,csa3,cas3,cas6,DinG,WYL	Orphan	ACCTACCTCATACAGTATAGAAACCTACCC	30	0	0	NA	NA	NA	1	1	Orphan	csx1,DEDDh,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas2,cas1,csx19,csx10gr5,csx20,RT,csa3,cas3,cas6,DinG,WYL	NA|185aa|up_7|NC_016940.1_1065811_1066366_-,NA|559aa|down_1|NC_016940.1_1077545_1079222_+,NA|262aa|down_4|NC_016940.1_1081254_1082040_+,NA|176aa|down_9|NC_016940.1_1087213_1087741_-	NA|982aa|up_9|NC_016940.1_1061604_1064550_-	pfam12770, CHAT, CHAT domain	NA|253aa|up_8|NC_016940.1_1064797_1065556_+	pfam10677, DUF2490, Protein of unknown function (DUF2490)	NA|185aa|up_7|NC_016940.1_1065811_1066366_-	NA	NA|328aa|up_6|NC_016940.1_1066370_1067354_-	PRK09293, PRK09293, class 1 fructose-bisphosphatase	NA|192aa|up_5|NC_016940.1_1067447_1068023_-	COG0163, UbiX family flavin prenyltransferase [Coenzyme transport and metabolism]	NA|306aa|up_4|NC_016940.1_1068106_1069024_-	pfam01551, Peptidase_M23, Peptidase family M23	NA|922aa|up_3|NC_016940.1_1069703_1072469_+	sd00006, TPR, Tetratricopeptide repeat	NA|351aa|up_2|NC_016940.1_1072547_1073600_-	pfam01471, PG_binding_1, Putative peptidoglycan binding domain	NA|366aa|up_1|NC_016940.1_1073730_1074828_-	cd03801, GT4_PimA-like, phosphatidyl-myo-inositol mannosyltransferase	NA|247aa|up_0|NC_016940.1_1075230_1075971_+	cd06529, S24_LexA-like, Peptidase S24 LexA-like proteins are involved in the SOS response leading to the repair of single-stranded DNA within the bacterial cell	NA|194aa|down_0|NC_016940.1_1076943_1077525_+	TIGR02937, RNA_polymerase_sigma_factor, RNA polymerase sigma factor, sigma-70 family	NA|559aa|down_1|NC_016940.1_1077545_1079222_+	NA	NA|119aa|down_2|NC_016940.1_1079799_1080156_-	COG1143, NuoI, Formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreductase 23 kD subunit (chain I) [Energy production and conversion]	NA|150aa|down_3|NC_016940.1_1080538_1080988_-	pfam18347, DUF5606, Domain of unknown function (DUF5606)	NA|262aa|down_4|NC_016940.1_1081254_1082040_+	NA	NA|502aa|down_5|NC_016940.1_1082102_1083608_-	pfam03321, GH3, GH3 auxin-responsive promoter	NA|565aa|down_6|NC_016940.1_1083994_1085689_+	cd07185, OmpA_C-like, Peptidoglycan binding domains similar to the C-terminal domain of outer-membrane protein OmpA	NA|157aa|down_7|NC_016940.1_1085764_1086235_+	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|277aa|down_8|NC_016940.1_1086182_1087013_+	pfam04338, DUF481, Protein of unknown function, DUF481	NA|176aa|down_9|NC_016940.1_1087213_1087741_-	NA
GCF_000250635.1_ASM25063v1	NC_016940	Saprospira grandis str. Lewin, complete sequence	9	1155454-1155534	8	CRISPRCasFinder	no		csx1,DEDDh,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas2,cas1,csx19,csx10gr5,csx20,RT,csa3,cas3,cas6,DinG,WYL	Orphan	CATATATCTCCTCATCTATTATCTC	25	0	0	NA	NA	NA	1	1	Orphan	csx1,DEDDh,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas2,cas1,csx19,csx10gr5,csx20,RT,csa3,cas3,cas6,DinG,WYL	NA|188aa|up_9|NC_016940.1_1144318_1144882_-,NA|250aa|up_8|NC_016940.1_1144892_1145642_-,NA|150aa|up_1|NC_016940.1_1154219_1154669_-,NA|150aa|down_6|NC_016940.1_1161268_1161718_+,NA|160aa|down_9|NC_016940.1_1164673_1165153_+	NA|188aa|up_9|NC_016940.1_1144318_1144882_-	NA	NA|250aa|up_8|NC_016940.1_1144892_1145642_-	NA	NA|239aa|up_7|NC_016940.1_1146021_1146738_+	PRK00085, recO, DNA repair protein RecO; Reviewed	NA|252aa|up_6|NC_016940.1_1146898_1147654_-	cd02511, Beta4Glucosyltransferase, UDP-glucose LOS-beta-1,4 glucosyltransferase is required for biosynthesis of lipooligosaccharide	NA|289aa|up_5|NC_016940.1_1147656_1148523_-	cd02511, Beta4Glucosyltransferase, UDP-glucose LOS-beta-1,4 glucosyltransferase is required for biosynthesis of lipooligosaccharide	NA|1003aa|up_4|NC_016940.1_1148627_1151636_-	PRK05306, infB, translation initiation factor IF-2; Validated	NA|439aa|up_3|NC_016940.1_1151926_1153243_-	PRK09202, nusA, transcription elongation factor NusA; Validated	NA|163aa|up_2|NC_016940.1_1153259_1153748_-	PRK00092, PRK00092, ribosome maturation protein RimP; Reviewed	NA|150aa|up_1|NC_016940.1_1154219_1154669_-	NA	NA|190aa|up_0|NC_016940.1_1154813_1155383_-	pfam13302, Acetyltransf_3, Acetyltransferase (GNAT) domain	NA|274aa|down_0|NC_016940.1_1155951_1156773_-	PRK08278, PRK08278, SDR family oxidoreductase	NA|535aa|down_1|NC_016940.1_1156867_1158472_-	COG2204, AtoC, Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]	NA|244aa|down_2|NC_016940.1_1158541_1159273_-	pfam00160, Pro_isomerase, Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD	NA|127aa|down_3|NC_016940.1_1159306_1159687_+	pfam07610, DUF1573, Protein of unknown function (DUF1573)	NA|384aa|down_4|NC_016940.1_1159683_1160835_-	TIGR03999, thiol_BshA, N-acetyl-alpha-D-glucosaminyl L-malate synthase BshA	NA|58aa|down_5|NC_016940.1_1161123_1161297_+	pfam10013, DUF2256, Uncharacterized protein conserved in bacteria (DUF2256)	NA|150aa|down_6|NC_016940.1_1161268_1161718_+	NA	NA|496aa|down_7|NC_016940.1_1162049_1163537_+	PRK08289, PRK08289, glyceraldehyde-3-phosphate dehydrogenase; Reviewed	NA|254aa|down_8|NC_016940.1_1163705_1164467_+	pfam13557, Phenol_MetA_deg, Putative MetA-pathway of phenol degradation	NA|160aa|down_9|NC_016940.1_1164673_1165153_+	NA
GCF_000250635.1_ASM25063v1	NC_016940	Saprospira grandis str. Lewin, complete sequence	10	1265705-1265821	9	CRISPRCasFinder	no		csx1,DEDDh,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas2,cas1,csx19,csx10gr5,csx20,RT,csa3,cas3,cas6,DinG,WYL	Orphan	ATCCTCTTGACCATTTTACAAGATCCTCG	29	0	0	NA	NA	NA	1	1	Orphan	csx1,DEDDh,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas2,cas1,csx19,csx10gr5,csx20,RT,csa3,cas3,cas6,DinG,WYL	NA,NA|170aa|down_0|NC_016940.1_1266144_1266654_+,NA|232aa|down_5|NC_016940.1_1271016_1271712_-,NA|49aa|down_8|NC_016940.1_1273887_1274034_+	NA|584aa|up_9|NC_016940.1_1247617_1249369_+	pfam13584, BatD, Oxygen tolerance	NA|255aa|up_8|NC_016940.1_1249368_1250133_+	sd00006, TPR, Tetratricopeptide repeat	NA|243aa|up_7|NC_016940.1_1250309_1251038_+	pfam13852, DUF4197, Protein of unknown function (DUF4197)	NA|634aa|up_6|NC_016940.1_1251163_1253065_+	TIGR04183, hypothetical_protein, Por secretion system C-terminal sorting domain	NA|482aa|up_5|NC_016940.1_1253245_1254691_-	pfam01609, DDE_Tnp_1, Transposase DDE domain	NA|239aa|up_4|NC_016940.1_1254861_1255578_+	TIGR04001, thiol_BshB1, bacillithiol biosynthesis deacetylase BshB1	NA|843aa|up_3|NC_016940.1_1255740_1258269_+	pfam11978, MVP_shoulder, Shoulder domain	NA|613aa|up_2|NC_016940.1_1258515_1260354_-	COG1506, DAP2, Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism]	NA|1144aa|up_1|NC_016940.1_1260798_1264230_+	cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment	NA|387aa|up_0|NC_016940.1_1264222_1265383_+	COG1506, DAP2, Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism]	NA|170aa|down_0|NC_016940.1_1266144_1266654_+	NA	NA|238aa|down_1|NC_016940.1_1267007_1267721_+	PRK12378, PRK12378, YebC/PmpR family DNA-binding transcriptional regulator	NA|351aa|down_2|NC_016940.1_1268021_1269074_-	cd05283, CAD1, Cinnamyl alcohol dehydrogenases (CAD)	NA|295aa|down_3|NC_016940.1_1269486_1270371_-	smart00342, HTH_ARAC, helix_turn_helix, arabinose operon control protein	NA|171aa|down_4|NC_016940.1_1270507_1271020_-	cd07067, HP_PGM_like, Histidine phosphatase domain found in phosphoglycerate mutases and related proteins, mostly phosphatases; contains a His residue which is phosphorylated during the reaction	NA|232aa|down_5|NC_016940.1_1271016_1271712_-	NA	NA|324aa|down_6|NC_016940.1_1271708_1272680_-	pfam00891, Methyltransf_2, O-methyltransferase	NA|301aa|down_7|NC_016940.1_1272859_1273762_-	pfam14532, Sigma54_activ_2, Sigma-54 interaction domain	NA|49aa|down_8|NC_016940.1_1273887_1274034_+	NA	NA|342aa|down_9|NC_016940.1_1274223_1275249_-	COG0535, COG0535, Predicted Fe-S oxidoreductases [General function prediction only]
GCF_000250635.1_ASM25063v1	NC_016940	Saprospira grandis str. Lewin, complete sequence	11	1389215-1389441	3	PILER-CR	no		csx1,DEDDh,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas2,cas1,csx19,csx10gr5,csx20,RT,csa3,cas3,cas6,DinG,WYL	Orphan	GCATTGGCGATACCATCACCATCAGCATCATAATCAGG	38	0	0	NA	NA	NA	2	2	Orphan	csx1,DEDDh,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas2,cas1,csx19,csx10gr5,csx20,RT,csa3,cas3,cas6,DinG,WYL	NA|270aa|up_5|NC_016940.1_1375603_1376413_-,NA|177aa|up_4|NC_016940.1_1376531_1377062_+,NA|287aa|up_3|NC_016940.1_1377018_1377879_+,NA|366aa|up_2|NC_016940.1_1378113_1379211_+,NA|297aa|down_5|NC_016940.1_1396618_1397509_+,NA|203aa|down_6|NC_016940.1_1397525_1398134_-,NA|561aa|down_7|NC_016940.1_1398191_1399874_-	NA|366aa|up_9|NC_016940.1_1372459_1373557_+	pfam01713, Smr, Smr domain	NA|65aa|up_8|NC_016940.1_1373662_1373857_+	PRK00172, rpmI, 50S ribosomal protein L35; Reviewed	NA|116aa|up_7|NC_016940.1_1373966_1374314_+	PRK05185, rplT, 50S ribosomal protein L20; Provisional	NA|311aa|up_6|NC_016940.1_1374648_1375581_-	COG1577, ERG12, Mevalonate kinase [Lipid metabolism]	NA|270aa|up_5|NC_016940.1_1375603_1376413_-	NA	NA|177aa|up_4|NC_016940.1_1376531_1377062_+	NA	NA|287aa|up_3|NC_016940.1_1377018_1377879_+	NA	NA|366aa|up_2|NC_016940.1_1378113_1379211_+	NA	NA|1128aa|up_1|NC_016940.1_1379388_1382772_+	cd18808, SF1_C_Upf1, C-terminal helicase domain of Upf1-like family helicases	NA|110aa|up_0|NC_016940.1_1383218_1383548_-	sd00046, FHA_bHelix, beta-helical repeat found in filamentous hemagglutinin and related adhesins and CdiA family proteins	NA|646aa|down_0|NC_016940.1_1391484_1393422_-	cd07185, OmpA_C-like, Peptidoglycan binding domains similar to the C-terminal domain of outer-membrane protein OmpA	NA|186aa|down_1|NC_016940.1_1394078_1394636_-	pfam01923, Cob_adeno_trans, Cobalamin adenosyltransferase	NA|189aa|down_2|NC_016940.1_1394642_1395209_-	pfam03653, UPF0093, Uncharacterized protein family (UPF0093)	NA|138aa|down_3|NC_016940.1_1395274_1395688_+	pfam01894, UPF0047, Uncharacterized protein family UPF0047	NA|191aa|down_4|NC_016940.1_1396041_1396614_+	TIGR02937, RNA_polymerase_sigma_factor, RNA polymerase sigma factor, sigma-70 family	NA|297aa|down_5|NC_016940.1_1396618_1397509_+	NA	NA|203aa|down_6|NC_016940.1_1397525_1398134_-	NA	NA|561aa|down_7|NC_016940.1_1398191_1399874_-	NA	NA|1050aa|down_8|NC_016940.1_1400079_1403229_-	TIGR02917, TPR_domain_protein, putative PEP-CTERM system TPR-repeat lipoprotein	NA|237aa|down_9|NC_016940.1_1403646_1404357_-	TIGR03725, T6A_YeaZ, tRNA threonylcarbamoyl adenosine modification protein YeaZ
GCF_000250635.1_ASM25063v1	NC_016940	Saprospira grandis str. Lewin, complete sequence	12	1461711-1461812	10	CRISPRCasFinder	no		csx1,DEDDh,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas2,cas1,csx19,csx10gr5,csx20,RT,csa3,cas3,cas6,DinG,WYL	Orphan	TCGAACTGGCGCCCCTTTGGGGCTGGTTGTCGC	33	0	0	NA	NA	NA	1	1	Orphan	csx1,DEDDh,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas2,cas1,csx19,csx10gr5,csx20,RT,csa3,cas3,cas6,DinG,WYL	NA|208aa|up_3|NC_016940.1_1457111_1457735_+,NA|203aa|up_2|NC_016940.1_1457991_1458600_-,NA|60aa|down_0|NC_016940.1_1462138_1462318_-,NA|225aa|down_2|NC_016940.1_1464093_1464768_+,NA|141aa|down_7|NC_016940.1_1469309_1469732_-	NA|140aa|up_9|NC_016940.1_1449543_1449963_-	pfam14126, DUF4293, Domain of unknown function (DUF4293)	NA|392aa|up_8|NC_016940.1_1450020_1451196_+	cd00751, thiolase, Thiolase are ubiquitous enzymes that catalyze the reversible thiolytic cleavage of 3-ketoacyl-CoA into acyl-CoA and acetyl-CoA, a 2-step reaction involving a covalent intermediate formed with a catalytic cysteine	NA|326aa|up_7|NC_016940.1_1451209_1452187_-	cd08567, GDPD_SpGDE_like, Glycerophosphodiester phosphodiesterase domain of putative Silicibacter pomeroyi glycerophosphodiester phosphodiesterase and similar proteins	NA|343aa|up_6|NC_016940.1_1453069_1454098_-	cd11593, Agmatinase-like_2, Agmatinase and related proteins	NA|445aa|up_5|NC_016940.1_1454360_1455695_-	cd13128, MATE_Wzx_like, Wzx, a subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins	NA|423aa|up_4|NC_016940.1_1455729_1456998_-	pfam13480, Acetyltransf_6, Acetyltransferase (GNAT) domain	NA|208aa|up_3|NC_016940.1_1457111_1457735_+	NA	NA|203aa|up_2|NC_016940.1_1457991_1458600_-	NA	NA|470aa|up_1|NC_016940.1_1458993_1460403_-	pfam05268, GP38, Phage tail fibre adhesin Gp38	NA|390aa|up_0|NC_016940.1_1460509_1461679_+	cd00614, CGS_like, CGS_like: Cystathionine gamma-synthase is a PLP dependent enzyme and catalyzes the committed step of methionine biosynthesis	NA|60aa|down_0|NC_016940.1_1462138_1462318_-	NA	NA|416aa|down_1|NC_016940.1_1462363_1463611_+	cd02966, TlpA_like_family, TlpA-like family; composed of  TlpA, ResA, DsbE and similar proteins	NA|225aa|down_2|NC_016940.1_1464093_1464768_+	NA	NA|351aa|down_3|NC_016940.1_1464811_1465864_-	pfam13354, Beta-lactamase2, Beta-lactamase enzyme family	NA|286aa|down_4|NC_016940.1_1466337_1467195_+	PRK12886, ubiA, prenyltransferase; Reviewed	NA|281aa|down_5|NC_016940.1_1467804_1468647_-	cd06529, S24_LexA-like, Peptidase S24 LexA-like proteins are involved in the SOS response leading to the repair of single-stranded DNA within the bacterial cell	NA|99aa|down_6|NC_016940.1_1468980_1469277_+	pfam02426, MIase, Muconolactone delta-isomerase	NA|141aa|down_7|NC_016940.1_1469309_1469732_-	NA	NA|469aa|down_8|NC_016940.1_1470147_1471554_+	cd07724, POD-like_MBL-fold, ETHE1 (PDO type I), persulfide dioxygenase A (PDOA, PDO type II) and related proteins; MBL-fold metallo-hydrolase domain	NA|203aa|down_9|NC_016940.1_1471682_1472291_+	pfam04143, Sulf_transp, Sulphur transport
GCF_000250635.1_ASM25063v1	NC_016940	Saprospira grandis str. Lewin, complete sequence	13	1461996-1462262	4	CRT	no		csx1,DEDDh,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas2,cas1,csx19,csx10gr5,csx20,RT,csa3,cas3,cas6,DinG,WYL	Orphan	TTTTTTTTCCAGCAAATG	18	0	0	NA	NA	NA	6	6	Orphan	csx1,DEDDh,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas2,cas1,csx19,csx10gr5,csx20,RT,csa3,cas3,cas6,DinG,WYL	NA|208aa|up_3|NC_016940.1_1457111_1457735_+,NA|203aa|up_2|NC_016940.1_1457991_1458600_-,NA|225aa|down_1|NC_016940.1_1464093_1464768_+,NA|141aa|down_6|NC_016940.1_1469309_1469732_-	NA|140aa|up_9|NC_016940.1_1449543_1449963_-	pfam14126, DUF4293, Domain of unknown function (DUF4293)	NA|392aa|up_8|NC_016940.1_1450020_1451196_+	cd00751, thiolase, Thiolase are ubiquitous enzymes that catalyze the reversible thiolytic cleavage of 3-ketoacyl-CoA into acyl-CoA and acetyl-CoA, a 2-step reaction involving a covalent intermediate formed with a catalytic cysteine	NA|326aa|up_7|NC_016940.1_1451209_1452187_-	cd08567, GDPD_SpGDE_like, Glycerophosphodiester phosphodiesterase domain of putative Silicibacter pomeroyi glycerophosphodiester phosphodiesterase and similar proteins	NA|343aa|up_6|NC_016940.1_1453069_1454098_-	cd11593, Agmatinase-like_2, Agmatinase and related proteins	NA|445aa|up_5|NC_016940.1_1454360_1455695_-	cd13128, MATE_Wzx_like, Wzx, a subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins	NA|423aa|up_4|NC_016940.1_1455729_1456998_-	pfam13480, Acetyltransf_6, Acetyltransferase (GNAT) domain	NA|208aa|up_3|NC_016940.1_1457111_1457735_+	NA	NA|203aa|up_2|NC_016940.1_1457991_1458600_-	NA	NA|470aa|up_1|NC_016940.1_1458993_1460403_-	pfam05268, GP38, Phage tail fibre adhesin Gp38	NA|390aa|up_0|NC_016940.1_1460509_1461679_+	cd00614, CGS_like, CGS_like: Cystathionine gamma-synthase is a PLP dependent enzyme and catalyzes the committed step of methionine biosynthesis	NA|416aa|down_0|NC_016940.1_1462363_1463611_+	cd02966, TlpA_like_family, TlpA-like family; composed of  TlpA, ResA, DsbE and similar proteins	NA|225aa|down_1|NC_016940.1_1464093_1464768_+	NA	NA|351aa|down_2|NC_016940.1_1464811_1465864_-	pfam13354, Beta-lactamase2, Beta-lactamase enzyme family	NA|286aa|down_3|NC_016940.1_1466337_1467195_+	PRK12886, ubiA, prenyltransferase; Reviewed	NA|281aa|down_4|NC_016940.1_1467804_1468647_-	cd06529, S24_LexA-like, Peptidase S24 LexA-like proteins are involved in the SOS response leading to the repair of single-stranded DNA within the bacterial cell	NA|99aa|down_5|NC_016940.1_1468980_1469277_+	pfam02426, MIase, Muconolactone delta-isomerase	NA|141aa|down_6|NC_016940.1_1469309_1469732_-	NA	NA|469aa|down_7|NC_016940.1_1470147_1471554_+	cd07724, POD-like_MBL-fold, ETHE1 (PDO type I), persulfide dioxygenase A (PDOA, PDO type II) and related proteins; MBL-fold metallo-hydrolase domain	NA|203aa|down_8|NC_016940.1_1471682_1472291_+	pfam04143, Sulf_transp, Sulphur transport	NA|138aa|down_9|NC_016940.1_1472304_1472718_+	pfam04143, Sulf_transp, Sulphur transport
GCF_000250635.1_ASM25063v1	NC_016940	Saprospira grandis str. Lewin, complete sequence	14	1648927-1649276	5	CRT	no	DEDDh	csx1,DEDDh,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas2,cas1,csx19,csx10gr5,csx20,RT,csa3,cas3,cas6,DinG,WYL	Unclear	TTCGCTGGAAAAANANNN	18	0	0	NA	NA	NA	8	8	Orphan	csx1,DEDDh,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas2,cas1,csx19,csx10gr5,csx20,RT,csa3,cas3,cas6,DinG,WYL	NA|135aa|up_9|NC_016940.1_1636211_1636616_+,NA|476aa|up_8|NC_016940.1_1636710_1638138_+,NA|245aa|up_6|NC_016940.1_1639286_1640021_-,NA|548aa|up_5|NC_016940.1_1640136_1641780_-,NA|76aa|up_3|NC_016940.1_1644115_1644343_-,NA|349aa|down_3|NC_016940.1_1652540_1653587_-	NA|135aa|up_9|NC_016940.1_1636211_1636616_+	NA	NA|476aa|up_8|NC_016940.1_1636710_1638138_+	NA	NA|277aa|up_7|NC_016940.1_1638396_1639227_+	pfam04147, Nop14, Nop14-like family	NA|245aa|up_6|NC_016940.1_1639286_1640021_-	NA	NA|548aa|up_5|NC_016940.1_1640136_1641780_-	NA	NA|553aa|up_4|NC_016940.1_1642146_1643805_-	COG0497, RecN, ATPase involved in DNA repair [DNA replication, recombination, and repair]	NA|76aa|up_3|NC_016940.1_1644115_1644343_-	NA	NA|638aa|up_2|NC_016940.1_1644591_1646505_+	TIGR00376, DNA-binding_protein_SMUBP-2, DNA helicase, putative	DEDDh|249aa|up_1|NC_016940.1_1646532_1647279_+	cd06127, DEDDh, DEDDh 3'-5' exonuclease domain family	NA|391aa|up_0|NC_016940.1_1647347_1648520_-	TIGR02037, Probable_periplasmic_serine_protease_do/HhoA-like, periplasmic serine protease, Do/DeqQ family	NA|211aa|down_0|NC_016940.1_1649634_1650267_-	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms]	NA|262aa|down_1|NC_016940.1_1650270_1651056_-	PRK05289, PRK05289, acyl-ACP--UDP-N-acetylglucosamine O-acyltransferase	NA|462aa|down_2|NC_016940.1_1651058_1652444_-	PRK13188, PRK13188, bifunctional UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase/(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase; Reviewed	NA|349aa|down_3|NC_016940.1_1652540_1653587_-	NA	NA|202aa|down_4|NC_016940.1_1653576_1654182_-	COG2849, COG2849, Uncharacterized protein conserved in bacteria [Function unknown]	NA|766aa|down_5|NC_016940.1_1655816_1658114_-	pfam00932, LTD, Lamin Tail Domain	NA|291aa|down_6|NC_016940.1_1658640_1659513_-	COG0568, RpoD, DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) [Transcription]	NA|214aa|down_7|NC_016940.1_1659682_1660324_-	cd03109, DTBS, dethiobiotin synthetase	NA|470aa|down_8|NC_016940.1_1660567_1661977_-	sd00006, TPR, Tetratricopeptide repeat	NA|382aa|down_9|NC_016940.1_1662066_1663212_-	PRK09240, thiH, 2-iminoacetate synthase ThiH
GCF_000250635.1_ASM25063v1	NC_016940	Saprospira grandis str. Lewin, complete sequence	15	1655392-1655493	11	CRISPRCasFinder	no	DEDDh	csx1,DEDDh,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas2,cas1,csx19,csx10gr5,csx20,RT,csa3,cas3,cas6,DinG,WYL	Unclear	GCAGGGCCAAAGGCCCGCAGGCC	23	0	0	NA	NA	NA	1	1	Orphan	csx1,DEDDh,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas2,cas1,csx19,csx10gr5,csx20,RT,csa3,cas3,cas6,DinG,WYL	NA|76aa|up_8|NC_016940.1_1644115_1644343_-,NA|349aa|up_1|NC_016940.1_1652540_1653587_-,NA	NA|553aa|up_9|NC_016940.1_1642146_1643805_-	COG0497, RecN, ATPase involved in DNA repair [DNA replication, recombination, and repair]	NA|76aa|up_8|NC_016940.1_1644115_1644343_-	NA	NA|638aa|up_7|NC_016940.1_1644591_1646505_+	TIGR00376, DNA-binding_protein_SMUBP-2, DNA helicase, putative	DEDDh|249aa|up_6|NC_016940.1_1646532_1647279_+	cd06127, DEDDh, DEDDh 3'-5' exonuclease domain family	NA|391aa|up_5|NC_016940.1_1647347_1648520_-	TIGR02037, Probable_periplasmic_serine_protease_do/HhoA-like, periplasmic serine protease, Do/DeqQ family	NA|211aa|up_4|NC_016940.1_1649634_1650267_-	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms]	NA|262aa|up_3|NC_016940.1_1650270_1651056_-	PRK05289, PRK05289, acyl-ACP--UDP-N-acetylglucosamine O-acyltransferase	NA|462aa|up_2|NC_016940.1_1651058_1652444_-	PRK13188, PRK13188, bifunctional UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase/(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase; Reviewed	NA|349aa|up_1|NC_016940.1_1652540_1653587_-	NA	NA|202aa|up_0|NC_016940.1_1653576_1654182_-	COG2849, COG2849, Uncharacterized protein conserved in bacteria [Function unknown]	NA|766aa|down_0|NC_016940.1_1655816_1658114_-	pfam00932, LTD, Lamin Tail Domain	NA|291aa|down_1|NC_016940.1_1658640_1659513_-	COG0568, RpoD, DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) [Transcription]	NA|214aa|down_2|NC_016940.1_1659682_1660324_-	cd03109, DTBS, dethiobiotin synthetase	NA|470aa|down_3|NC_016940.1_1660567_1661977_-	sd00006, TPR, Tetratricopeptide repeat	NA|382aa|down_4|NC_016940.1_1662066_1663212_-	PRK09240, thiH, 2-iminoacetate synthase ThiH	NA|578aa|down_5|NC_016940.1_1663712_1665446_+	PRK05347, PRK05347, glutaminyl-tRNA synthetase; Provisional	NA|852aa|down_6|NC_016940.1_1665512_1668068_-	cd09618, CBM9_like_2, DOMON-like type 9 carbohydrate binding module	NA|340aa|down_7|NC_016940.1_1669060_1670080_-	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|321aa|down_8|NC_016940.1_1670084_1671047_-	COG0714, COG0714, MoxR-like ATPases [General function prediction only]	NA|269aa|down_9|NC_016940.1_1671345_1672152_-	cd01639, IMPase, IMPase, inositol monophosphatase and related domains
GCF_000250635.1_ASM25063v1	NC_016940	Saprospira grandis str. Lewin, complete sequence	16	2177219-2177362	12	CRISPRCasFinder	no		csx1,DEDDh,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas2,cas1,csx19,csx10gr5,csx20,RT,csa3,cas3,cas6,DinG,WYL	Orphan	AAACGTAGCGCCGACGACCGAAGGGAGGCGGAGGCCCCAAAA	42	1	3	2177261-2177320|2177261-2177320|2177261-2177320	NC_016940.1_3279328-3279269|NC_016940.1_2097669-2097728|NC_016940.1_3332911-3332852	NA	1	1	Orphan	csx1,DEDDh,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas2,cas1,csx19,csx10gr5,csx20,RT,csa3,cas3,cas6,DinG,WYL	NA|223aa|up_0|NC_016940.1_2176383_2177052_-,NA|196aa|down_3|NC_016940.1_2180205_2180793_+,NA|99aa|down_5|NC_016940.1_2182135_2182432_-	NA|502aa|up_9|NC_016940.1_2161191_2162697_+	pfam12771, SusD-like_2, Starch-binding associating with outer membrane	NA|310aa|up_8|NC_016940.1_2163027_2163957_-	TIGR00276, iron-sulfur_cluster-binding_protein, epoxyqueuosine reductase	NA|236aa|up_7|NC_016940.1_2164217_2164925_-	cd02144, iodotyrosine_dehalogenase, iodotyrosine dehalogenase	NA|146aa|up_6|NC_016940.1_2164878_2165316_-	pfam02130, UPF0054, Uncharacterized protein family UPF0054	NA|136aa|up_5|NC_016940.1_2165320_2165728_-	pfam13581, HATPase_c_2, Histidine kinase-like ATPase domain	NA|374aa|up_4|NC_016940.1_2166064_2167186_+	pfam13729, TraF_2, F plasmid transfer operon, TraF, protein	NA|555aa|up_3|NC_016940.1_2167621_2169286_-	pfam13751, DDE_Tnp_1_6, Transposase DDE domain	NA|1656aa|up_2|NC_016940.1_2169449_2174417_+	cd02258, Peptidase_C25_N, Peptidase C25 family N-terminal domain, found in Arg-gingipain (Rgp), Lys-gingipain (Kgp) and related proteins	NA|482aa|up_1|NC_016940.1_2174616_2176062_+	pfam01609, DDE_Tnp_1, Transposase DDE domain	NA|223aa|up_0|NC_016940.1_2176383_2177052_-	NA	NA|290aa|down_0|NC_016940.1_2177475_2178345_+	cd14762, GS_STAS, Globin sensor domain; coupled to a STAS domain	NA|285aa|down_1|NC_016940.1_2178349_2179204_+	cd14762, GS_STAS, Globin sensor domain; coupled to a STAS domain	NA|297aa|down_2|NC_016940.1_2179255_2180146_+	cd14762, GS_STAS, Globin sensor domain; coupled to a STAS domain	NA|196aa|down_3|NC_016940.1_2180205_2180793_+	NA	NA|333aa|down_4|NC_016940.1_2181132_2182131_-	PRK00046, murB, UDP-N-acetylmuramate dehydrogenase	NA|99aa|down_5|NC_016940.1_2182135_2182432_-	NA	NA|287aa|down_6|NC_016940.1_2182637_2183498_+	cd14762, GS_STAS, Globin sensor domain; coupled to a STAS domain	NA|291aa|down_7|NC_016940.1_2183622_2184495_+	cd14762, GS_STAS, Globin sensor domain; coupled to a STAS domain	NA|284aa|down_8|NC_016940.1_2184497_2185349_+	cd07041, STAS_RsbR_RsbS_like, Sulphate Transporter and Anti-Sigma factor antagonist domain of the "stressosome" complex proteins RsbS and RsbR, regulators of the bacterial stress activated alternative sigma factor sigma-B by phosphorylation	NA|88aa|down_9|NC_016940.1_2185332_2185596_-	cd00914, PCD_DCoH_subfamily_b, PCD_DCoH: The bifunctional protein pterin-4alpha-carbinolamine dehydratase (PCD), also known as DCoH  (dimerization cofactor of hepatocyte nuclear factor-1), is both a transcription activator and a metabolic enzyme
GCF_000250635.1_ASM25063v1	NC_016940	Saprospira grandis str. Lewin, complete sequence	17	2203291-2203414	13	CRISPRCasFinder	no		csx1,DEDDh,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas2,cas1,csx19,csx10gr5,csx20,RT,csa3,cas3,cas6,DinG,WYL	Orphan	CGCCTGCCGAAGGCAGGAGGCCCCAAAACAGC	32	0	0	NA	NA	NA	1	1	Orphan	csx1,DEDDh,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas2,cas1,csx19,csx10gr5,csx20,RT,csa3,cas3,cas6,DinG,WYL	NA|172aa|up_3|NC_016940.1_2199895_2200411_-,NA	NA|206aa|up_9|NC_016940.1_2192663_2193281_-	TIGR03512, GldD_lipo, gliding motility-associated lipoprotein GldD	NA|456aa|up_8|NC_016940.1_2193296_2194664_-	TIGR03520, GldE, gliding motility-associated protein GldE	NA|163aa|up_7|NC_016940.1_2194912_2195401_-	TIGR00621, Single-stranded_DNA-binding_protein, single stranded DNA-binding protein (ssb)	NA|356aa|up_6|NC_016940.1_2195482_2196550_-	COG1194, MutY, A/G-specific DNA glycosylase [DNA replication, recombination, and repair]	NA|493aa|up_5|NC_016940.1_2197295_2198774_-	pfam10102, DUF2341, Domain of unknown function (DUF2341)	NA|335aa|up_4|NC_016940.1_2198882_2199887_-	sd00033, LRR_RI, leucine-rich repeats, ribonuclease inhibitor (RI)-like subfamily	NA|172aa|up_3|NC_016940.1_2199895_2200411_-	NA	NA|400aa|up_2|NC_016940.1_2200563_2201763_-	pfam12094, DUF3570, Protein of unknown function (DUF3570)	NA|71aa|up_1|NC_016940.1_2201972_2202185_-	pfam14086, DUF4266, Domain of unknown function (DUF4266)	NA|328aa|up_0|NC_016940.1_2202174_2203158_-	pfam02424, ApbE, ApbE family	NA|142aa|down_0|NC_016940.1_2203426_2203852_-	pfam13098, Thioredoxin_2, Thioredoxin-like domain	NA|138aa|down_1|NC_016940.1_2203862_2204276_-	cd03467, Rieske, Rieske domain; a [2Fe-2S] cluster binding domain commonly found in Rieske non-heme iron oxygenase (RO) systems such as naphthalene and biphenyl dioxygenases, as well as in plant/cyanobacterial chloroplast b6f and mitochondrial cytochrome bc(1) complexes	NA|423aa|down_2|NC_016940.1_2204736_2206005_-	sd00006, TPR, Tetratricopeptide repeat	NA|139aa|down_3|NC_016940.1_2206147_2206564_-	TIGR02890, conserved_hypothetical_protein, regulatory protein, yteA family	NA|511aa|down_4|NC_016940.1_2206860_2208393_-	PRK01406, gltX, glutamyl-tRNA synthetase; Reviewed	NA|365aa|down_5|NC_016940.1_2208870_2209965_+	cd09084, EEP-2, Exonuclease-Endonuclease-Phosphatase (EEP) domain superfamily; uncharacterized family 2	NA|595aa|down_6|NC_016940.1_2210326_2212111_+	TIGR04183, hypothetical_protein, Por secretion system C-terminal sorting domain	NA|122aa|down_7|NC_016940.1_2212338_2212704_-	pfam05635, 23S_rRNA_IVP, 23S rRNA-intervening sequence protein	NA|243aa|down_8|NC_016940.1_2212771_2213500_-	PRK00024, PRK00024, DNA repair protein RadC	NA|321aa|down_9|NC_016940.1_2213857_2214820_-	pfam01694, Rhomboid, Rhomboid family
GCF_000250635.1_ASM25063v1	NC_016940	Saprospira grandis str. Lewin, complete sequence	18	2362244-2362344	14	CRISPRCasFinder	no		csx1,DEDDh,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas2,cas1,csx19,csx10gr5,csx20,RT,csa3,cas3,cas6,DinG,WYL	Orphan	AGGCGGGCGCAGCCCGCCTGGCC	23	1	10	2362267-2362321|2362267-2362321|2362267-2362321|2362267-2362321|2362267-2362321|2362267-2362321|2362267-2362321|2362267-2362321|2362267-2362321|2362267-2362321	NC_016940.1_880078-880132|NC_016940.1_978370-978424|NC_016940.1_4178735-4178789|NC_016940.1_6483-6537|NC_016940.1_535947-536001|NC_016940.1_980734-980788|NC_016940.1_2476012-2476066|NC_016940.1_2654462-2654408|NC_016940.1_2809653-2809707|NC_016940.1_4204898-4204952	NA	1	1	Orphan	csx1,DEDDh,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas2,cas1,csx19,csx10gr5,csx20,RT,csa3,cas3,cas6,DinG,WYL	NA|115aa|up_5|NC_016940.1_2356548_2356893_-,NA|93aa|up_1|NC_016940.1_2361068_2361347_-,NA|228aa|up_0|NC_016940.1_2361518_2362202_-,NA|141aa|down_8|NC_016940.1_2375255_2375678_-	NA|1277aa|up_9|NC_016940.1_2344124_2347955_+	PRK00405, rpoB, DNA-directed RNA polymerase subunit beta; Reviewed	NA|1421aa|up_8|NC_016940.1_2348438_2352701_+	PRK00566, PRK00566, DNA-directed RNA polymerase subunit beta'; Provisional	NA|804aa|up_7|NC_016940.1_2353010_2355422_-	cd02000, TPP_E1_PDC_ADC_BCADC, Thiamine pyrophosphate (TPP) family, E1 of PDC_ADC_BCADC subfamily, TPP-binding module; composed of proteins similar to the E1 components of the human pyruvate dehydrogenase complex (PDC), the acetoin dehydrogenase complex (ADC) and the branched chain alpha-keto acid dehydrogenase/2-oxoisovalerate dehydrogenase complex (BCADC)	NA|138aa|up_6|NC_016940.1_2355811_2356225_+	pfam07610, DUF1573, Protein of unknown function (DUF1573)	NA|115aa|up_5|NC_016940.1_2356548_2356893_-	NA	NA|478aa|up_4|NC_016940.1_2357178_2358612_+	COG1705, FlgJ, Muramidase (flagellum-specific) [Cell motility and secretion / Intracellular trafficking and secretion]	NA|303aa|up_3|NC_016940.1_2358881_2359790_-	pfam11335, DUF3137, Protein of unknown function (DUF3137)	NA|406aa|up_2|NC_016940.1_2359871_2361089_+	COG1914, MntH, Mn2+ and Fe2+ transporters of the NRAMP family [Inorganic ion transport and metabolism]	NA|93aa|up_1|NC_016940.1_2361068_2361347_-	NA	NA|228aa|up_0|NC_016940.1_2361518_2362202_-	NA	NA|315aa|down_0|NC_016940.1_2362557_2363502_+	smart00257, LysM, Lysin motif	NA|1168aa|down_1|NC_016940.1_2363498_2367002_-	TIGR04189, gliding_motility-related_protein, cell surface protein SprA	NA|349aa|down_2|NC_016940.1_2367297_2368344_-	cd02901, Macro_Poa1p-like, macrodomain, Poa1p-like family	NA|206aa|down_3|NC_016940.1_2368375_2368993_-	pfam14487, DUF4433, Domain of unknown function (DUF4433)	NA|249aa|down_4|NC_016940.1_2369094_2369841_-	COG1183, PssA, Phosphatidylserine synthase [Lipid metabolism]	NA|305aa|down_5|NC_016940.1_2369934_2370849_+	TIGR00950, Uncharacterized_inner_membrane_transporter_YicL, Carboxylate/Amino Acid/Amine Transporter	NA|769aa|down_6|NC_016940.1_2372145_2374452_-	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|196aa|down_7|NC_016940.1_2374656_2375244_-	PRK14823, PRK14823, putative deoxyribonucleoside-triphosphatase; Provisional	NA|141aa|down_8|NC_016940.1_2375255_2375678_-	NA	NA|357aa|down_9|NC_016940.1_2376115_2377186_+	PRK13357, PRK13357, branched-chain amino acid aminotransferase; Provisional
GCF_000250635.1_ASM25063v1	NC_016940	Saprospira grandis str. Lewin, complete sequence	19	2371364-2371753	6	CRT	no		csx1,DEDDh,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas2,cas1,csx19,csx10gr5,csx20,RT,csa3,cas3,cas6,DinG,WYL	Orphan	TTTTGCAACTGCAGATTAGC	20	8	28	2371384-2371404|2371384-2371404|2371384-2371404|2371384-2371404|2371384-2371404|2371384-2371404|2371384-2371404|2371384-2371404|2371384-2371404|2371384-2371404|2371384-2371404|2371384-2371404|2371384-2371404|2371384-2371404|2371425-2371445|2371425-2371445|2371466-2371486|2371466-2371486|2371507-2371527|2371507-2371527|2371507-2371527|2371507-2371527|2371507-2371527|2371507-2371527|2371548-2371568|2371589-2371609|2371671-2371691|2371712-2371733	NC_016940.1_1548454-1548434|NC_016940.1_2663797-2663777|NC_016940.1_2663961-2663941|NC_016940.1_1548372-1548352|NC_016940.1_1548413-1548393|NC_016940.1_2663838-2663818|NC_016940.1_2663920-2663900|NC_016940.1_2874119-2874099|NC_016940.1_2874242-2874222|NC_016940.1_1548331-1548311|NC_016940.1_2663879-2663859|NC_016940.1_2874078-2874058|NC_016940.1_2874160-2874140|NC_016940.1_2874201-2874181|NC_016940.1_1548495-1548475|NC_016940.1_2663756-2663736|NC_016940.1_1548495-1548475|NC_016940.1_2663756-2663736|NC_016940.1_1548331-1548311|NC_016940.1_1548454-1548434|NC_016940.1_2663797-2663777|NC_016940.1_2663961-2663941|NC_016940.1_2874160-2874140|NC_016940.1_2874201-2874181|NC_016940.1_1548495-1548475|NC_016940.1_2874119-2874099|NC_016940.1_1548249-1548229|NC_016940.1_1548208-1548187	NA	9	9	Orphan	csx1,DEDDh,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas2,cas1,csx19,csx10gr5,csx20,RT,csa3,cas3,cas6,DinG,WYL	NA|93aa|up_7|NC_016940.1_2361068_2361347_-,NA|228aa|up_6|NC_016940.1_2361518_2362202_-,NA|141aa|down_2|NC_016940.1_2375255_2375678_-,NA|149aa|down_5|NC_016940.1_2378714_2379161_-	NA|303aa|up_9|NC_016940.1_2358881_2359790_-	pfam11335, DUF3137, Protein of unknown function (DUF3137)	NA|406aa|up_8|NC_016940.1_2359871_2361089_+	COG1914, MntH, Mn2+ and Fe2+ transporters of the NRAMP family [Inorganic ion transport and metabolism]	NA|93aa|up_7|NC_016940.1_2361068_2361347_-	NA	NA|228aa|up_6|NC_016940.1_2361518_2362202_-	NA	NA|315aa|up_5|NC_016940.1_2362557_2363502_+	smart00257, LysM, Lysin motif	NA|1168aa|up_4|NC_016940.1_2363498_2367002_-	TIGR04189, gliding_motility-related_protein, cell surface protein SprA	NA|349aa|up_3|NC_016940.1_2367297_2368344_-	cd02901, Macro_Poa1p-like, macrodomain, Poa1p-like family	NA|206aa|up_2|NC_016940.1_2368375_2368993_-	pfam14487, DUF4433, Domain of unknown function (DUF4433)	NA|249aa|up_1|NC_016940.1_2369094_2369841_-	COG1183, PssA, Phosphatidylserine synthase [Lipid metabolism]	NA|305aa|up_0|NC_016940.1_2369934_2370849_+	TIGR00950, Uncharacterized_inner_membrane_transporter_YicL, Carboxylate/Amino Acid/Amine Transporter	NA|769aa|down_0|NC_016940.1_2372145_2374452_-	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|196aa|down_1|NC_016940.1_2374656_2375244_-	PRK14823, PRK14823, putative deoxyribonucleoside-triphosphatase; Provisional	NA|141aa|down_2|NC_016940.1_2375255_2375678_-	NA	NA|357aa|down_3|NC_016940.1_2376115_2377186_+	PRK13357, PRK13357, branched-chain amino acid aminotransferase; Provisional	NA|329aa|down_4|NC_016940.1_2377731_2378718_+	COG0530, ECM27, Ca2+/Na+ antiporter [Inorganic ion transport and metabolism]	NA|149aa|down_5|NC_016940.1_2378714_2379161_-	NA	NA|422aa|down_6|NC_016940.1_2379702_2380968_+	PRK13419, PRK13419, F0F1 ATP synthase subunit A; Provisional	NA|65aa|down_7|NC_016940.1_2381023_2381218_+	cd18121, ATP-synt_Fo_c, membrane-bound Fo complex of F-ATP synthase, subunit c	NA|174aa|down_8|NC_016940.1_2381320_2381842_+	PRK14471, PRK14471, F0F1 ATP synthase subunit B; Provisional	NA|187aa|down_9|NC_016940.1_2381870_2382431_+	pfam00213, OSCP, ATP synthase delta (OSCP) subunit
GCF_000250635.1_ASM25063v1	NC_016940	Saprospira grandis str. Lewin, complete sequence	20	2783444-2783549	15	CRISPRCasFinder	no		csx1,DEDDh,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas2,cas1,csx19,csx10gr5,csx20,RT,csa3,cas3,cas6,DinG,WYL	Orphan	TGGGGCCTCCTGCCTGCAGCAGGCG	25	1	2	2783469-2783524|2783469-2783524	NC_016940.1_1930552-1930607|NC_016940.1_1930767-1930822	NA	1	1	Orphan	csx1,DEDDh,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas2,cas1,csx19,csx10gr5,csx20,RT,csa3,cas3,cas6,DinG,WYL	NA|616aa|up_9|NC_016940.1_2769561_2771409_-,NA|260aa|up_0|NC_016940.1_2782621_2783401_-,NA|250aa|down_7|NC_016940.1_2790185_2790935_-	NA|616aa|up_9|NC_016940.1_2769561_2771409_-	NA	NA|577aa|up_8|NC_016940.1_2771458_2773189_-	TIGR02917, TPR_domain_protein, putative PEP-CTERM system TPR-repeat lipoprotein	NA|832aa|up_7|NC_016940.1_2774107_2776603_-	pfam13715, CarbopepD_reg_2, CarboxypepD_reg-like domain	NA|217aa|up_6|NC_016940.1_2776718_2777369_+	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|102aa|up_5|NC_016940.1_2777903_2778209_+	PRK05573, rplU, 50S ribosomal protein L21; Validated	NA|91aa|up_4|NC_016940.1_2778267_2778540_+	PRK05435, rpmA, 50S ribosomal protein L27; Validated	NA|367aa|up_3|NC_016940.1_2778871_2779972_+	cd00118, LysM, Lysin Motif is a small domain involved in binding peptidoglycan	NA|350aa|up_2|NC_016940.1_2780025_2781075_-	pfam03631, Virul_fac_BrkB, Virulence factor BrkB	NA|401aa|up_1|NC_016940.1_2781415_2782618_-	TIGR04039, MXAN_0977_Heme2, di-heme enzyme, MXAN_0977 family	NA|260aa|up_0|NC_016940.1_2782621_2783401_-	NA	NA|251aa|down_0|NC_016940.1_2783867_2784620_+	PRK04169, PRK04169, heptaprenylglyceryl phosphate synthase	NA|313aa|down_1|NC_016940.1_2784659_2785598_+	PRK00098, PRK00098, GTPase RsgA; Reviewed	NA|173aa|down_2|NC_016940.1_2785784_2786303_+	pfam10652, DUF2480, Protein of unknown function (DUF2480)	NA|308aa|down_3|NC_016940.1_2786304_2787228_+	cd16894, MltD-like, Membrane-bound lytic murein transglycosylase D and similar proteins	NA|77aa|down_4|NC_016940.1_2787363_2787594_-	PRK12286, rpmF, 50S ribosomal protein L32; Reviewed	NA|177aa|down_5|NC_016940.1_2787644_2788175_-	pfam02620, DUF177, Uncharacterized ACR, COG1399	NA|511aa|down_6|NC_016940.1_2788318_2789851_-	TIGR00665, DnaB, replicative DNA helicase	NA|250aa|down_7|NC_016940.1_2790185_2790935_-	NA	NA|358aa|down_8|NC_016940.1_2791142_2792216_+	TIGR03519, bacteroidetes-specific_membrane_protein, type IX secretion system membrane protein, PorP/SprF family	NA|762aa|down_9|NC_016940.1_2792450_2794736_+	cd07185, OmpA_C-like, Peptidoglycan binding domains similar to the C-terminal domain of outer-membrane protein OmpA
GCF_000250635.1_ASM25063v1	NC_016940	Saprospira grandis str. Lewin, complete sequence	21	3227980-3228210	7	CRT	no		csx1,DEDDh,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas2,cas1,csx19,csx10gr5,csx20,RT,csa3,cas3,cas6,DinG,WYL	Orphan	GAGNNAATCTGCAACTGCAAAAC	23	2	9	3228086-3228104|3228128-3228145|3228128-3228145|3228128-3228145|3228128-3228145|3228128-3228145|3228128-3228145|3228128-3228145|3228128-3228145	NC_016940.1_3227961-3227979|NC_016940.1_1052692-1052709|NC_016940.1_2465382-2465365|NC_016940.1_2465464-2465447|NC_016940.1_3186396-3186379|NC_016940.1_3186480-3186463|NC_016940.1_3186521-3186504|NC_016940.1_3186603-3186586|NC_016940.1_3186644-3186627	NA	5	5	Orphan	csx1,DEDDh,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas2,cas1,csx19,csx10gr5,csx20,RT,csa3,cas3,cas6,DinG,WYL	NA|176aa|up_2|NC_016940.1_3224662_3225190_+,NA|317aa|up_1|NC_016940.1_3225202_3226153_+,NA|491aa|down_0|NC_016940.1_3228442_3229915_-,NA|510aa|down_3|NC_016940.1_3232040_3233570_-,NA|447aa|down_4|NC_016940.1_3233575_3234916_-,NA|316aa|down_5|NC_016940.1_3234982_3235930_-,NA|84aa|down_8|NC_016940.1_3237619_3237871_-,NA|291aa|down_9|NC_016940.1_3237863_3238736_-	NA|320aa|up_9|NC_016940.1_3218027_3218987_-	COG2025, FixB, Electron transfer flavoprotein, alpha subunit [Energy production and conversion]	NA|247aa|up_8|NC_016940.1_3219020_3219761_-	cd01714, ETF_beta, The electron transfer flavoprotein (ETF) serves as a specific electron acceptor for various mitochondrial dehydrogenases	NA|343aa|up_7|NC_016940.1_3219922_3220951_-	pfam00520, Ion_trans, Ion transport protein	NA|176aa|up_6|NC_016940.1_3221213_3221741_-	pfam00186, DHFR_1, Dihydrofolate reductase	NA|219aa|up_5|NC_016940.1_3221874_3222531_+	cd03426, CoAse, Coenzyme A pyrophosphatase (CoAse), a member of the Nudix hydrolase superfamily, functions to catalyze the elimination of oxidized inactive CoA, which can inhibit CoA-utilizing enzymes	NA|175aa|up_4|NC_016940.1_3222794_3223319_+	pfam02152, FolB, Dihydroneopterin aldolase	NA|448aa|up_3|NC_016940.1_3223319_3224663_+	pfam01593, Amino_oxidase, Flavin containing amine oxidoreductase	NA|176aa|up_2|NC_016940.1_3224662_3225190_+	NA	NA|317aa|up_1|NC_016940.1_3225202_3226153_+	NA	NA|399aa|up_0|NC_016940.1_3226563_3227760_+	pfam00872, Transposase_mut, Transposase, Mutator family	NA|491aa|down_0|NC_016940.1_3228442_3229915_-	NA	NA|195aa|down_1|NC_016940.1_3230126_3230711_-	cd06141, WRN_exo, DEDDy 3'-5' exonuclease domain of WRN and similar proteins	NA|367aa|down_2|NC_016940.1_3230756_3231857_-	pfam07728, AAA_5, AAA domain (dynein-related subfamily)	NA|510aa|down_3|NC_016940.1_3232040_3233570_-	NA	NA|447aa|down_4|NC_016940.1_3233575_3234916_-	NA	NA|316aa|down_5|NC_016940.1_3234982_3235930_-	NA	NA|263aa|down_6|NC_016940.1_3236556_3237345_-	pfam11251, DUF3050, Protein of unknown function (DUF3050)	NA|72aa|down_7|NC_016940.1_3237358_3237574_-	PRK10671, copA, copper-exporting P-type ATPase CopA	NA|84aa|down_8|NC_016940.1_3237619_3237871_-	NA	NA|291aa|down_9|NC_016940.1_3237863_3238736_-	NA
GCF_000250635.1_ASM25063v1	NC_016940	Saprospira grandis str. Lewin, complete sequence	22	3635285-3635388	16	CRISPRCasFinder	no		csx1,DEDDh,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas2,cas1,csx19,csx10gr5,csx20,RT,csa3,cas3,cas6,DinG,WYL	Orphan	CAGCTATGGCCGAAGGCCAAACGGCC	26	1	5	3635311-3635362|3635311-3635362|3635311-3635362|3635311-3635362|3635311-3635362	NC_016940.1_1591686-1591737|NC_016940.1_1755051-1755102|NC_016940.1_2716031-2715980|NC_016940.1_535947-535998|NC_016940.1_1773638-1773689	NA	1	1	Orphan	csx1,DEDDh,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas2,cas1,csx19,csx10gr5,csx20,RT,csa3,cas3,cas6,DinG,WYL	NA|47aa|up_9|NC_016940.1_3624181_3624322_+,NA|316aa|down_1|NC_016940.1_3638729_3639677_-,NA|313aa|down_6|NC_016940.1_3644579_3645518_-,NA|172aa|down_7|NC_016940.1_3645966_3646482_-	NA|47aa|up_9|NC_016940.1_3624181_3624322_+	NA	NA|274aa|up_8|NC_016940.1_3624494_3625316_-	PRK10334, PRK10334, small-conductance mechanosensitive channel MscS	NA|543aa|up_7|NC_016940.1_3625562_3627191_+	cd07123, ALDH_F4-17_P5CDH, Delta(1)-pyrroline-5-carboxylate dehydrogenase, ALDH families 4 and 17	NA|177aa|up_6|NC_016940.1_3627392_3627923_+	COG0262, FolA, Dihydrofolate reductase [Coenzyme metabolism]	NA|475aa|up_5|NC_016940.1_3628001_3629426_+	pfam03781, FGE-sulfatase, Sulfatase-modifying factor enzyme 1	NA|325aa|up_4|NC_016940.1_3629440_3630415_+	TIGR04183, hypothetical_protein, Por secretion system C-terminal sorting domain	NA|389aa|up_3|NC_016940.1_3630668_3631835_-	cd01158, SCAD_SBCAD, Short chain acyl-CoA dehydrogenases and eukaryotic short/branched chain acyl-CoA dehydrogenases	NA|189aa|up_2|NC_016940.1_3631967_3632534_-	pfam06271, RDD, RDD family	NA|446aa|up_1|NC_016940.1_3632973_3634311_+	COG0415, PhrB, Deoxyribodipyrimidine photolyase [DNA replication, recombination, and repair]	NA|231aa|up_0|NC_016940.1_3634303_3634996_+	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|928aa|down_0|NC_016940.1_3635511_3638295_-	PRK05755, PRK05755, DNA polymerase I; Provisional	NA|316aa|down_1|NC_016940.1_3638729_3639677_-	NA	NA|201aa|down_2|NC_016940.1_3639673_3640276_-	pfam02668, TauD, Taurine catabolism dioxygenase TauD, TfdA family	NA|266aa|down_3|NC_016940.1_3640364_3641162_-	pfam18863, AbiJ_NTD4, AbiJ N-terminal domain 4	NA|501aa|down_4|NC_016940.1_3641283_3642786_-	pfam13304, AAA_21, AAA domain, putative AbiEii toxin, Type IV TA system	NA|371aa|down_5|NC_016940.1_3642851_3643964_-	pfam14281, PDDEXK_4, PD-(D/E)XK nuclease superfamily	NA|313aa|down_6|NC_016940.1_3644579_3645518_-	NA	NA|172aa|down_7|NC_016940.1_3645966_3646482_-	NA	NA|465aa|down_8|NC_016940.1_3646564_3647959_-	PRK11823, PRK11823, DNA repair protein RadA; Provisional	NA|236aa|down_9|NC_016940.1_3648263_3648971_-	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]
GCF_000250635.1_ASM25063v1	NC_016940	Saprospira grandis str. Lewin, complete sequence	23	3700002-3700098	17	CRISPRCasFinder	no		csx1,DEDDh,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas2,cas1,csx19,csx10gr5,csx20,RT,csa3,cas3,cas6,DinG,WYL	Orphan	CAGTTCGACGACCAAAGGGAGTAA	24	1	1	3700026-3700074	NC_016940.1_17846-17798	NA	1	1	Orphan	csx1,DEDDh,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas2,cas1,csx19,csx10gr5,csx20,RT,csa3,cas3,cas6,DinG,WYL	NA|281aa|up_9|NC_016940.1_3688976_3689819_+,NA|149aa|up_0|NC_016940.1_3699249_3699696_-,NA|323aa|down_8|NC_016940.1_3709710_3710679_+,NA|248aa|down_9|NC_016940.1_3710762_3711506_+	NA|281aa|up_9|NC_016940.1_3688976_3689819_+	NA	NA|349aa|up_8|NC_016940.1_3689965_3691012_+	TIGR04183, hypothetical_protein, Por secretion system C-terminal sorting domain	NA|330aa|up_7|NC_016940.1_3691407_3692397_+	pfam10043, DUF2279, Predicted periplasmic lipoprotein (DUF2279)	NA|424aa|up_6|NC_016940.1_3692865_3694137_+	TIGR04183, hypothetical_protein, Por secretion system C-terminal sorting domain	NA|499aa|up_5|NC_016940.1_3694196_3695693_-	COG1696, DltB, Predicted membrane protein involved in D-alanine export [Cell envelope biogenesis, outer membrane]	NA|290aa|up_4|NC_016940.1_3695698_3696568_-	cd00229, SGNH_hydrolase, SGNH_hydrolase, or GDSL_hydrolase, is a diverse family of lipases and esterases	NA|349aa|up_3|NC_016940.1_3696569_3697616_-	PRK00094, gpsA, NAD(P)H-dependent glycerol-3-phosphate dehydrogenase	NA|212aa|up_2|NC_016940.1_3698031_3698667_-	cd07041, STAS_RsbR_RsbS_like, Sulphate Transporter and Anti-Sigma factor antagonist domain of the "stressosome" complex proteins RsbS and RsbR, regulators of the bacterial stress activated alternative sigma factor sigma-B by phosphorylation	NA|137aa|up_1|NC_016940.1_3698751_3699162_-	pfam11964, SpoIIAA-like, SpoIIAA-like	NA|149aa|up_0|NC_016940.1_3699249_3699696_-	NA	NA|302aa|down_0|NC_016940.1_3700132_3701038_-	cd05239, GDP_FS_SDR_e, GDP-fucose synthetase, extended (e) SDRs	NA|332aa|down_1|NC_016940.1_3701041_3702037_-	pfam16363, GDP_Man_Dehyd, GDP-mannose 4,6 dehydratase	NA|252aa|down_2|NC_016940.1_3702054_3702810_-	cd06433, GT_2_WfgS_like, WfgS and WfeV are involved in O-antigen biosynthesis	NA|281aa|down_3|NC_016940.1_3703081_3703924_-	PHA02517, PHA02517, putative transposase OrfB; Reviewed	NA|96aa|down_4|NC_016940.1_3703910_3704198_-	pfam01527, HTH_Tnp_1, Transposase	NA|679aa|down_5|NC_016940.1_3704489_3706526_-	pfam03235, DUF262, Protein of unknown function DUF262	NA|391aa|down_6|NC_016940.1_3706529_3707702_-	pfam14491, DUF4435, Protein of unknown function (DUF4435)	NA|430aa|down_7|NC_016940.1_3707715_3709005_-	pfam13304, AAA_21, AAA domain, putative AbiEii toxin, Type IV TA system	NA|323aa|down_8|NC_016940.1_3709710_3710679_+	NA	NA|248aa|down_9|NC_016940.1_3710762_3711506_+	NA
GCF_000250635.1_ASM25063v1	NC_016940	Saprospira grandis str. Lewin, complete sequence	24	3742956-3753501	4,18,8,5,6	PILER-CR,CRISPRCasFinder,CRT,PILER-CR,PILER-CR	no		csx1,DEDDh,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas2,cas1,csx19,csx10gr5,csx20,RT,csa3,cas3,cas6,DinG,WYL	Orphan	GTTTCAATGCTGCTTTGCCTGCAATGGGTTTAGTAT,ATACTAAACCCATTGCAGGCAAAGCAGCATTGAAAC,ATACTAAACCCATTGCAGGCAAAGCAGCATTGAAAC,GTTTCAATGCTGCTTCGCCTGCAATGGGTTTAGTAT,GTTTCAATGCTGCTTCGCCTGCAATGGGTTTAGTAT	36,36,36,36,36	0	0	NA	NA	NA:NA:NA:NA:NA	144,148,148,144,144	148	Orphan	csx1,DEDDh,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas2,cas1,csx19,csx10gr5,csx20,RT,csa3,cas3,cas6,DinG,WYL	NA|359aa|up_9|NC_016940.1_3730932_3732009_-,NA|137aa|up_7|NC_016940.1_3734020_3734431_-,NA|128aa|up_6|NC_016940.1_3734466_3734850_-,NA|119aa|up_5|NC_016940.1_3734865_3735222_-,NA|328aa|down_0|NC_016940.1_3754689_3755673_+,NA|265aa|down_8|NC_016940.1_3763563_3764358_-	NA|359aa|up_9|NC_016940.1_3730932_3732009_-	NA	NA|637aa|up_8|NC_016940.1_3732083_3733994_+	COG0514, RecQ, Superfamily II DNA helicase [DNA replication, recombination, and repair]	NA|137aa|up_7|NC_016940.1_3734020_3734431_-	NA	NA|128aa|up_6|NC_016940.1_3734466_3734850_-	NA	NA|119aa|up_5|NC_016940.1_3734865_3735222_-	NA	NA|139aa|up_4|NC_016940.1_3735238_3735655_-	pfam11964, SpoIIAA-like, SpoIIAA-like	NA|127aa|up_3|NC_016940.1_3735663_3736044_-	pfam16120, DUF4836, Domain of unknown function (DUF4836)	NA|693aa|up_2|NC_016940.1_3736451_3738530_+	COG1770, PtrB, Protease II [Amino acid transport and metabolism]	NA|519aa|up_1|NC_016940.1_3738593_3740150_-	COG0606, COG0606, Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]	NA|363aa|up_0|NC_016940.1_3741431_3742520_+	pfam04231, Endonuclease_1, Endonuclease I	NA|328aa|down_0|NC_016940.1_3754689_3755673_+	NA	NA|272aa|down_1|NC_016940.1_3756792_3757608_+	cd13967, PT_UbiA_5, UbiA family of prenyltransferases (PTases), Unknown subgroup	NA|430aa|down_2|NC_016940.1_3757607_3758897_+	COG0147, TrpE, Anthranilate/para-aminobenzoate synthases component I [Amino acid transport and metabolism / Coenzyme metabolism]	NA|287aa|down_3|NC_016940.1_3759038_3759899_+	cd07041, STAS_RsbR_RsbS_like, Sulphate Transporter and Anti-Sigma factor antagonist domain of the "stressosome" complex proteins RsbS and RsbR, regulators of the bacterial stress activated alternative sigma factor sigma-B by phosphorylation	NA|290aa|down_4|NC_016940.1_3759979_3760849_+	cd07041, STAS_RsbR_RsbS_like, Sulphate Transporter and Anti-Sigma factor antagonist domain of the "stressosome" complex proteins RsbS and RsbR, regulators of the bacterial stress activated alternative sigma factor sigma-B by phosphorylation	NA|158aa|down_5|NC_016940.1_3760890_3761364_-	pfam12680, SnoaL_2, SnoaL-like domain	NA|175aa|down_6|NC_016940.1_3761659_3762184_-	pfam00731, AIRC, AIR carboxylase	NA|379aa|down_7|NC_016940.1_3762196_3763333_-	PRK06019, PRK06019, phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed	NA|265aa|down_8|NC_016940.1_3763563_3764358_-	NA	NA|406aa|down_9|NC_016940.1_3764438_3765656_-	TIGR03087, stp1, sugar transferase, PEP-CTERM/EpsH1 system associated
GCF_000250635.1_ASM25063v1	NC_016940	Saprospira grandis str. Lewin, complete sequence	25	3820468-3828723	19,9,7,8	CRISPRCasFinder,CRT,PILER-CR,PILER-CR	no	cas6	csx1,DEDDh,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas2,cas1,csx19,csx10gr5,csx20,RT,csa3,cas3,cas6,DinG,WYL	Unclear	GTTTCAATGCTGCTTCGCCTGCAAAGGGTTTAGTAT,GTTTCAATGCTGCTTCGCCTGCAAAGGGTTTAGTAT,GTTTCAATGCTGCTTCGCCTGCAAAGGGTTTAGTAT,GTTTCAATGCTGCTTCGCCTGCAAAGGGTTTAGTAT	36,36,36,36	0	0	NA	NA	NA:NA:NA:NA	116,116,113,113	116	Unclear	csx1,DEDDh,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas2,cas1,csx19,csx10gr5,csx20,RT,csa3,cas3,cas6,DinG,WYL	NA|292aa|up_7|NC_016940.1_3809168_3810044_+,NA|86aa|up_6|NC_016940.1_3810131_3810389_+,NA|120aa|down_0|NC_016940.1_3828992_3829352_-,NA|349aa|down_6|NC_016940.1_3840414_3841461_+	NA|387aa|up_9|NC_016940.1_3807167_3808328_+	pfam05684, DUF819, Protein of unknown function (DUF819)	NA|186aa|up_8|NC_016940.1_3808590_3809148_+	pfam13785, DUF4178, Domain of unknown function (DUF4178)	NA|292aa|up_7|NC_016940.1_3809168_3810044_+	NA	NA|86aa|up_6|NC_016940.1_3810131_3810389_+	NA	NA|637aa|up_5|NC_016940.1_3810596_3812507_+	cd07185, OmpA_C-like, Peptidoglycan binding domains similar to the C-terminal domain of outer-membrane protein OmpA	cas6|274aa|up_4|NC_016940.1_3812611_3813433_+	cd09759, Cas6_I-A, CRISPR/Cas system-associated RAMP superfamily protein Cas6	NA|442aa|up_3|NC_016940.1_3813700_3815026_+	PRK11856, PRK11856, branched-chain alpha-keto acid dehydrogenase subunit E2; Reviewed	NA|239aa|up_2|NC_016940.1_3815251_3815968_-	pfam10067, DUF2306, Predicted membrane protein (DUF2306)	NA|763aa|up_1|NC_016940.1_3815973_3818262_-	TIGR01448, recD_rel, helicase, putative, RecD/TraA family	NA|482aa|up_0|NC_016940.1_3818538_3819984_-	pfam01609, DDE_Tnp_1, Transposase DDE domain	NA|120aa|down_0|NC_016940.1_3828992_3829352_-	NA	NA|1101aa|down_1|NC_016940.1_3829920_3833223_-	TIGR04183, hypothetical_protein, Por secretion system C-terminal sorting domain	NA|140aa|down_2|NC_016940.1_3834890_3835310_-	PRK14545, PRK14545, nucleoside diphosphate kinase; Provisional	NA|1062aa|down_3|NC_016940.1_3835399_3838585_-	pfam12770, CHAT, CHAT domain	NA|182aa|down_4|NC_016940.1_3839034_3839580_+	pfam02622, DUF179, Uncharacterized ACR, COG1678	cas6|246aa|down_5|NC_016940.1_3839570_3840308_+	pfam17262, DUF5328, Family of unknown function (DUF5328)	NA|349aa|down_6|NC_016940.1_3840414_3841461_+	NA	NA|277aa|down_7|NC_016940.1_3841472_3842303_+	pfam10988, DUF2807, Putative auto-transporter adhesin, head GIN domain	NA|124aa|down_8|NC_016940.1_3842411_3842783_+	pfam05656, DUF805, Protein of unknown function (DUF805)	NA|429aa|down_9|NC_016940.1_3843105_3844392_-	PRK00062, PRK00062, glutamate-1-semialdehyde 2,1-aminomutase
GCF_000250635.1_ASM25063v1	NC_016940	Saprospira grandis str. Lewin, complete sequence	26	4152842-4153058	20	CRISPRCasFinder	no		csx1,DEDDh,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas2,cas1,csx19,csx10gr5,csx20,RT,csa3,cas3,cas6,DinG,WYL	Orphan	TTTTTTTCCAGCAAATGCACTGAGGGATTACAATGGAGCATTATTTTTCCAG	52	0	0	NA	NA	NA	1	1	Orphan	csx1,DEDDh,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas2,cas1,csx19,csx10gr5,csx20,RT,csa3,cas3,cas6,DinG,WYL	NA|129aa|up_9|NC_016940.1_4136993_4137380_+,NA|165aa|up_7|NC_016940.1_4140369_4140864_-,NA|328aa|down_1|NC_016940.1_4157004_4157988_+,NA|179aa|down_2|NC_016940.1_4158309_4158846_+,NA|371aa|down_6|NC_016940.1_4165953_4167066_+	NA|129aa|up_9|NC_016940.1_4136993_4137380_+	NA	NA|872aa|up_8|NC_016940.1_4137703_4140319_-	cd01347, ligand_gated_channel, TonB dependent/Ligand-Gated channels are created by a monomeric 22 strand (22,24) anti-parallel beta-barrel	NA|165aa|up_7|NC_016940.1_4140369_4140864_-	NA	NA|263aa|up_6|NC_016940.1_4141534_4142323_-	COG2220, COG2220, Predicted Zn-dependent hydrolases of the beta-lactamase fold [General function prediction only]	NA|293aa|up_5|NC_016940.1_4142405_4143284_-	pfam12833, HTH_18, Helix-turn-helix domain	NA|614aa|up_4|NC_016940.1_4143337_4145179_-	cd01154, AidB, Proteins involved in DNA damage response, similar to the AidB gene product	NA|427aa|up_3|NC_016940.1_4145272_4146553_-	TIGR01885, Ornithine_aminotransferase, ornithine aminotransferase	NA|325aa|up_2|NC_016940.1_4146748_4147723_-	TIGR04183, hypothetical_protein, Por secretion system C-terminal sorting domain	NA|364aa|up_1|NC_016940.1_4147735_4148827_-	COG2813, RsmC, 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]	NA|1087aa|up_0|NC_016940.1_4149182_4152443_-	cd07562, Peptidase_S41_TRI, Tricorn protease; serine protease family S41	NA|1174aa|down_0|NC_016940.1_4153449_4156971_+	TIGR02168, Chromosome_partition_protein_Smc, chromosome segregation protein SMC, common bacterial type	NA|328aa|down_1|NC_016940.1_4157004_4157988_+	NA	NA|179aa|down_2|NC_016940.1_4158309_4158846_+	NA	NA|182aa|down_3|NC_016940.1_4158851_4159397_+	pfam06803, DUF1232, Protein of unknown function (DUF1232)	NA|1237aa|down_4|NC_016940.1_4159687_4163398_-	pfam02128, Peptidase_M36, Fungalysin metallopeptidase (M36)	NA|392aa|down_5|NC_016940.1_4164653_4165829_+	PRK00143, mnmA, tRNA-specific 2-thiouridylase MnmA; Reviewed	NA|371aa|down_6|NC_016940.1_4165953_4167066_+	NA	NA|366aa|down_7|NC_016940.1_4167339_4168437_+	pfam02481, DNA_processg_A, DNA recombination-mediator protein A	NA|161aa|down_8|NC_016940.1_4168421_4168904_-	PRK00168, coaD, phosphopantetheine adenylyltransferase; Provisional	NA|424aa|down_9|NC_016940.1_4168977_4170249_-	PRK05912, PRK05912, tyrosyl-tRNA synthetase; Validated
GCF_000250635.1_ASM25063v1	NC_016936	Saprospira grandis str. Lewin plasmid unnamed, complete sequence	1	30603-30700	1	CRISPRCasFinder	no			Orphan	TCCCTTTGGTCGTCGAACTGCGGC	24	0	0	NA	NA	NA	1	1	Orphan	csx1,DEDDh,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas2,cas1,csx19,csx10gr5,csx20,RT,csa3,cas3,cas6,DinG,WYL	NA|331aa|up_8|NC_016936.1_19200_20193_-,NA|77aa|up_3|NC_016936.1_25585_25816_+,NA|116aa|up_1|NC_016936.1_28897_29245_-,NA	NA|478aa|up_9|NC_016936.1_17293_18727_+	PRK09246, PRK09246, amidophosphoribosyltransferase; Provisional	NA|331aa|up_8|NC_016936.1_19200_20193_-	NA	NA|319aa|up_7|NC_016936.1_20813_21770_-	COG1216, COG1216, Predicted glycosyltransferases [General function prediction only]	NA|291aa|up_6|NC_016936.1_22179_23052_+	cd07185, OmpA_C-like, Peptidoglycan binding domains similar to the C-terminal domain of outer-membrane protein OmpA	NA|353aa|up_5|NC_016936.1_23117_24176_-	pfam03301, Trp_dioxygenase, Tryptophan 2,3-dioxygenase	NA|213aa|up_4|NC_016936.1_24647_25286_+	cd02042, ParAB_family, partition proteins ParAB family	NA|77aa|up_3|NC_016936.1_25585_25816_+	NA	NA|457aa|up_2|NC_016936.1_26646_28017_+	pfam01051, Rep_3, Initiator Replication protein	NA|116aa|up_1|NC_016936.1_28897_29245_-	NA	NA|426aa|up_0|NC_016936.1_29255_30533_-	COG2204, AtoC, Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]	NA|194aa|down_0|NC_016936.1_30864_31446_+	pfam17932, TetR_C_24, Tetracyclin repressor-like, C-terminal domain	NA|693aa|down_1|NC_016936.1_31544_33623_+	COG0022, AcoB, Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, beta subunit [Energy production and conversion]	NA|357aa|down_2|NC_016936.1_33822_34893_+	TIGR02160, 12-phenylacetyl-CoA_epoxidase_subunit_E, phenylacetate-CoA oxygenase/reductase, PaaK subunit	NA|321aa|down_3|NC_016936.1_34984_35947_+	PRK13778, paaA, phenylacetate-CoA oxygenase subunit PaaA; Provisional	NA|95aa|down_4|NC_016936.1_36103_36388_+	PRK13781, paaB, phenylacetate-CoA oxygenase subunit PaaB; Provisional	NA|253aa|down_5|NC_016936.1_36421_37180_+	pfam05138, PaaA_PaaC, Phenylacetic acid catabolic protein	NA|164aa|down_6|NC_016936.1_37398_37890_+	TIGR02159, Putative_12-phenylacetyl-CoA_epoxidase_subunit_D, phenylacetate-CoA oxygenase, PaaJ subunit	NA|262aa|down_7|NC_016936.1_37899_38685_+	PRK08140, PRK08140, enoyl-CoA hydratase; Provisional	NA|386aa|down_8|NC_016936.1_38695_39853_+	PRK08268, PRK08268, 3-hydroxy-acyl-CoA dehydrogenase; Validated	NA|145aa|down_9|NC_016936.1_39845_40280_+	TIGR02286, Acyl-coenzyme_A_thioesterase_PaaI, phenylacetic acid degradation protein PaaD
