assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000239235.1_ASM23923v1	NC_017351	Staphylococcus aureus subsp. aureus 11819-97, complete sequence	1	871209-871290	1	CRISPRCasFinder	no		WYL,cas3,DEDDh,DinG,csa3,RT	Orphan	ACCCCAACTTCCATTGCCTGTAGAA	25	1	16	871234-871265|871234-871265|871234-871265|871234-871265|871234-871265|871234-871265|871234-871265|871234-871265|871234-871265|871234-871265|871234-871265|871234-871265|871234-871265|871234-871265|871234-871265|871234-871265	NC_017351.1_379415-379384|NC_017351.1_1100266-1100297|NC_017351.1_182485-182454|NC_017351.1_301510-301479|NC_017351.1_379470-379439|NC_017351.1_817122-817153|NC_017351.1_858716-858747|NC_017351.1_864152-864183|NC_017351.1_1073888-1073919|NC_017351.1_1074004-1074035|NC_017351.1_1379816-1379785|NC_017351.1_1468890-1468921|NC_017351.1_1693742-1693773|NC_017351.1_1727768-1727799|NC_017351.1_2372228-2372259|NC_017351.1_2559689-2559658	NA	1	1	Orphan	WYL,cas3,DEDDh,DinG,csa3,RT	NA,NA|153aa|down_6|NC_017351.1_879299_879758_+	NA|280aa|up_9|NC_017351.1_859929_860769_+	PRK12437, PRK12437, prolipoprotein diacylglyceryl transferase; Reviewed	NA|162aa|up_8|NC_017351.1_860776_861262_+	cd04647, LbH_MAT_like, Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins	NA|480aa|up_7|NC_017351.1_861269_862709_+	sd00008, TPR_YbbN, C-terminal Tetratricopeptide repeat (TPR) region of YbbN and similar motifs	NA|312aa|up_6|NC_017351.1_862775_863711_+	TIGR01292, Thioredoxin_reductase, thioredoxin-disulfide reductase	NA|304aa|up_5|NC_017351.1_864418_865330_+	COG1660, COG1660, Predicted P-loop-containing kinase [General function prediction only]	NA|332aa|up_4|NC_017351.1_865326_866322_+	TIGR01826, Putative_gluconeogenesis_factor, conserved hypothetical protein, cofD-related	NA|315aa|up_3|NC_017351.1_866432_867377_+	TIGR00647, DNA_bind_WhiA, DNA-binding protein WhiA	NA|196aa|up_2|NC_017351.1_867940_868528_+	PRK00277, clpP, ATP-dependent Clp protease proteolytic subunit; Reviewed	NA|301aa|up_1|NC_017351.1_868770_869673_-	COG1090, COG1090, Predicted nucleoside-diphosphate sugar epimerase [General function prediction only]	NA|210aa|up_0|NC_017351.1_870375_871005_+	PRK00409, PRK00409, recombination and DNA strand exchange inhibitor protein; Reviewed	NA|338aa|down_0|NC_017351.1_871706_872720_+	COG2390, DeoR, Transcriptional regulator, contains sigma factor-related N-terminal domain [Transcription]	NA|337aa|down_1|NC_017351.1_872772_873783_+	TIGR01534, Glyceraldehyde-3-phosphate_dehydrogenase, glyceraldehyde-3-phosphate dehydrogenase, type I	NA|397aa|down_2|NC_017351.1_873921_875112_+	PRK00073, pgk, phosphoglycerate kinase; Provisional	NA|254aa|down_3|NC_017351.1_875233_875995_+	PRK00042, tpiA, triosephosphate isomerase; Provisional	NA|506aa|down_4|NC_017351.1_875997_877515_+	PRK05434, PRK05434, 2,3-bisphosphoglycerate-independent phosphoglycerate mutase	NA|435aa|down_5|NC_017351.1_877644_878949_+	PRK00077, eno, enolase; Provisional	NA|153aa|down_6|NC_017351.1_879299_879758_+	NA	NA|78aa|down_7|NC_017351.1_879824_880058_+	COG1314, SecG, Preprotein translocase subunit SecG [Intracellular trafficking and secretion]	NA|247aa|down_8|NC_017351.1_880173_880914_+	COG1647, COG1647, Esterase/lipase [General function prediction only]	NA|791aa|down_9|NC_017351.1_880947_883320_+	TIGR02063, Ribonuclease_R, ribonuclease R
GCF_000239235.1_ASM23923v1	NC_017351	Staphylococcus aureus subsp. aureus 11819-97, complete sequence	2	890288-891249	1	CRT	no		WYL,cas3,DEDDh,DinG,csa3,RT	Orphan	GANAGCGATTCAGANTCAGANAGTGANTCNGANNNNNN	38	3	27	891022-891043|891022-891043|891022-891043|891022-891043|891022-891043|891022-891043|891022-891043|891022-891043|891022-891043|891022-891043|891022-891043|891022-891043|891022-891043|891022-891043|891022-891043|891130-891151|891130-891151|891130-891151|891130-891151|891130-891151|891130-891151|891130-891151|891130-891151|891130-891151|891130-891151|891130-891151|891184-891217	NC_017351.1_605612-605633|NC_017351.1_605792-605813|NC_017351.1_605846-605867|NC_017351.1_610316-610337|NC_017351.1_2750404-2750383|NC_017351.1_2750530-2750509|NC_017351.1_2750680-2750659|NC_017351.1_605450-605471|NC_017351.1_609872-609893|NC_017351.1_609890-609911|NC_017351.1_610388-610409|NC_017351.1_610424-610445|NC_017351.1_614010-614031|NC_017351.1_614292-614313|NC_017351.1_2750878-2750857|NC_017351.1_605762-605783|NC_017351.1_610232-610253|NC_017351.1_610358-610379|NC_017351.1_610430-610451|NC_017351.1_614142-614163|NC_017351.1_614262-614283|NC_017351.1_2750434-2750413|NC_017351.1_610178-610199|NC_017351.1_610286-610307|NC_017351.1_613962-613983|NC_017351.1_614088-614109|NC_017351.1_613980-614013	NA	12	12	Orphan	WYL,cas3,DEDDh,DinG,csa3,RT	NA|153aa|up_9|NC_017351.1_879299_879758_+,NA|108aa|up_4|NC_017351.1_885127_885451_-,NA|52aa|up_2|NC_017351.1_886967_887123_+,NA|174aa|up_1|NC_017351.1_887130_887652_+,NA|341aa|down_1|NC_017351.1_893611_894634_+,NA|157aa|down_2|NC_017351.1_894968_895439_+,NA|73aa|down_5|NC_017351.1_897517_897736_-,NA|95aa|down_6|NC_017351.1_897797_898082_-,NA|63aa|down_8|NC_017351.1_898926_899115_-,NA|87aa|down_9|NC_017351.1_899143_899404_-	NA|153aa|up_9|NC_017351.1_879299_879758_+	NA	NA|78aa|up_8|NC_017351.1_879824_880058_+	COG1314, SecG, Preprotein translocase subunit SecG [Intracellular trafficking and secretion]	NA|247aa|up_7|NC_017351.1_880173_880914_+	COG1647, COG1647, Esterase/lipase [General function prediction only]	NA|791aa|up_6|NC_017351.1_880947_883320_+	TIGR02063, Ribonuclease_R, ribonuclease R	NA|155aa|up_5|NC_017351.1_883341_883806_+	PRK05422, smpB, SsrA-binding protein SmpB	NA|108aa|up_4|NC_017351.1_885127_885451_-	NA	NA|243aa|up_3|NC_017351.1_885804_886533_-	pfam16729, DUF5067, Domain of unknown function (DUF5067)	NA|52aa|up_2|NC_017351.1_886967_887123_+	NA	NA|174aa|up_1|NC_017351.1_887130_887652_+	NA	NA|177aa|up_0|NC_017351.1_887790_888321_+	COG3153, COG3153, Predicted acetyltransferase [General function prediction only]	NA|515aa|down_0|NC_017351.1_891716_893261_+	pfam08764, Coagulase, Staphylococcus aureus coagulase	NA|341aa|down_1|NC_017351.1_893611_894634_+	NA	NA|157aa|down_2|NC_017351.1_894968_895439_+	NA	NA|229aa|down_3|NC_017351.1_895779_896466_+	pfam00565, SNase, Staphylococcal nuclease homolog	NA|67aa|down_4|NC_017351.1_896822_897023_+	COG1278, CspC, Cold shock proteins [Transcription]	NA|73aa|down_5|NC_017351.1_897517_897736_-	NA	NA|95aa|down_6|NC_017351.1_897797_898082_-	NA	NA|190aa|down_7|NC_017351.1_898169_898739_-	COG3863, COG3863, Uncharacterized distant relative of cell wall-associated hydrolases [Function unknown]	NA|63aa|down_8|NC_017351.1_898926_899115_-	NA	NA|87aa|down_9|NC_017351.1_899143_899404_-	NA
GCF_000239235.1_ASM23923v1	NC_017351	Staphylococcus aureus subsp. aureus 11819-97, complete sequence	3	1258679-1258763	2	CRISPRCasFinder	no	cas3	WYL,cas3,DEDDh,DinG,csa3,RT	Unclear	AAAGTCAGCTTACAATAATGTGCAAGTTGG	30	0	0	NA	NA	NA	1	1	Unclear	WYL,cas3,DEDDh,DinG,csa3,RT	NA,NA	NA|78aa|up_9|NC_017351.1_1248035_1248269_+	PRK00982, acpP, acyl carrier protein; Provisional	NA|244aa|up_8|NC_017351.1_1248384_1249116_+	PRK00102, rnc, ribonuclease III; Reviewed	NA|1189aa|up_7|NC_017351.1_1249262_1252829_+	COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]	NA|417aa|up_6|NC_017351.1_1252828_1254079_+	PRK10416, PRK10416, signal recognition particle-docking protein FtsY; Provisional	NA|111aa|up_5|NC_017351.1_1254065_1254398_+	PRK00118, PRK00118, putative DNA-binding protein; Validated	NA|456aa|up_4|NC_017351.1_1254423_1255791_+	PRK10867, PRK10867, signal recognition particle protein; Provisional	NA|92aa|up_3|NC_017351.1_1256225_1256501_+	COG0228, RpsP, Ribosomal protein S16 [Translation, ribosomal structure and biogenesis]	NA|168aa|up_2|NC_017351.1_1256688_1257192_+	PRK00122, rimM, 16S rRNA-processing protein RimM; Provisional	NA|246aa|up_1|NC_017351.1_1257191_1257929_+	PRK00026, trmD, tRNA (guanine-N(1)-)-methyltransferase; Reviewed	NA|117aa|up_0|NC_017351.1_1258031_1258382_+	PRK05338, rplS, 50S ribosomal protein L19; Provisional	NA|869aa|down_0|NC_017351.1_1258836_1261443_-	COG4485, COG4485, Predicted membrane protein [Function unknown]	NA|295aa|down_1|NC_017351.1_1261843_1262728_+	PRK09563, rbgA, GTPase YlqF; Reviewed	NA|256aa|down_2|NC_017351.1_1262711_1263479_+	cd07182, RNase_HII_bacteria_HII_like, Bacterial Ribonuclease HII-like	NA|389aa|down_3|NC_017351.1_1263587_1264754_+	PRK00696, sucC, ADP-forming succinate--CoA ligase subunit beta	NA|303aa|down_4|NC_017351.1_1264775_1265684_+	PRK05678, PRK05678, succinyl-CoA synthetase subunit alpha; Validated	NA|373aa|down_5|NC_017351.1_1265910_1267029_+	pfam01476, LysM, LysM domain	NA|415aa|down_6|NC_017351.1_1267056_1268301_+	pfam02388, FemAB, FemAB family	NA|291aa|down_7|NC_017351.1_1268473_1269346_+	COG0758, Smf, Predicted Rossmann fold nucleotide-binding protein involved in DNA uptake [DNA replication, recombination, and repair / Intracellular trafficking and secretion]	NA|692aa|down_8|NC_017351.1_1269519_1271595_+	PRK05582, PRK05582, type I DNA topoisomerase	NA|436aa|down_9|NC_017351.1_1271750_1273058_+	PRK05335, PRK05335, tRNA (uracil-5-)-methyltransferase Gid; Reviewed
GCF_000239235.1_ASM23923v1	NC_017351	Staphylococcus aureus subsp. aureus 11819-97, complete sequence	4	1727667-1727752	3	CRISPRCasFinder	no		WYL,cas3,DEDDh,DinG,csa3,RT	Orphan	TCTGTGTTGGGGCCCCATCCCCAACTT	27	1	8	1727694-1727725|1727694-1727725|1727694-1727725|1727694-1727725|1727694-1727725|1727694-1727725|1727694-1727725|1727694-1727725	NC_017351.1_286062-286093|NC_017351.1_286276-286307|NC_017351.1_379317-379286|NC_017351.1_1073814-1073845|NC_017351.1_1073930-1073961|NC_017351.1_1174827-1174796|NC_017351.1_1258701-1258670|NC_017351.1_2640842-2640873	NA	1	1	Orphan	WYL,cas3,DEDDh,DinG,csa3,RT	NA,NA|49aa|down_3|NC_017351.1_1731756_1731903_-,NA|43aa|down_8|NC_017351.1_1734939_1735068_-	NA|208aa|up_9|NC_017351.1_1716404_1717028_-	PRK05480, PRK05480, uridine/cytidine kinase; Provisional	NA|423aa|up_8|NC_017351.1_1717027_1718296_-	COG0826, COG0826, Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]	NA|308aa|up_7|NC_017351.1_1718307_1719231_-	COG0826, COG0826, Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]	NA|213aa|up_6|NC_017351.1_1719233_1719872_-	COG4122, COG4122, Predicted O-methyltransferase [General function prediction only]	NA|103aa|up_5|NC_017351.1_1720156_1720465_-	PRK13678, PRK13678, hypothetical protein; Provisional	NA|143aa|up_4|NC_017351.1_1720479_1720908_-	COG0816, COG0816, Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B	NA|87aa|up_3|NC_017351.1_1720911_1721172_-	PRK05473, IreB-like, IreB family regulatory phosphoprotein	NA|877aa|up_2|NC_017351.1_1721234_1723865_-	PRK00252, alaS, alanyl-tRNA synthetase; Reviewed	NA|826aa|up_1|NC_017351.1_1724207_1726685_-	TIGR01448, recD_rel, helicase, putative, RecD/TraA family	NA|223aa|up_0|NC_017351.1_1726686_1727355_-	sd00006, TPR, Tetratricopeptide repeat	NA|373aa|down_0|NC_017351.1_1727933_1729052_-	PRK00143, mnmA, tRNA-specific 2-thiouridylase MnmA; Reviewed	NA|381aa|down_1|NC_017351.1_1729052_1730195_-	COG1104, NifS, Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes [Amino acid transport and metabolism]	NA|338aa|down_2|NC_017351.1_1730506_1731520_+	TIGR03558, oxido_grp_1, luciferase family oxidoreductase, group 1	NA|49aa|down_3|NC_017351.1_1731756_1731903_-	NA	NA|61aa|down_4|NC_017351.1_1731942_1732125_-	COG3237, COG3237, Uncharacterized protein conserved in bacteria [Function unknown]	NA|141aa|down_5|NC_017351.1_1732224_1732647_-	COG1959, COG1959, Predicted transcriptional regulator [Transcription]	NA|425aa|down_6|NC_017351.1_1732731_1734006_+	PRK13342, PRK13342, recombination factor protein RarA; Reviewed	NA|258aa|down_7|NC_017351.1_1734166_1734940_-	COG1179, COG1179, Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism]	NA|43aa|down_8|NC_017351.1_1734939_1735068_-	NA	NA|589aa|down_9|NC_017351.1_1735400_1737167_-	PRK00476, aspS, aspartyl-tRNA synthetase; Validated
GCF_000239235.1_ASM23923v1	NC_017351	Staphylococcus aureus subsp. aureus 11819-97, complete sequence	5	2016580-2016664	4	CRISPRCasFinder	no	DEDDh	WYL,cas3,DEDDh,DinG,csa3,RT	Unclear	TGTTGGGGCCCACACCCCAACTTGCA	26	0	0	NA	NA	NA	1	1	Orphan	WYL,cas3,DEDDh,DinG,csa3,RT	NA|92aa|up_6|NC_017351.1_2010722_2010998_+,NA|129aa|up_1|NC_017351.1_2014979_2015366_-,NA|138aa|down_1|NC_017351.1_2018406_2018820_-,NA|31aa|down_5|NC_017351.1_2021965_2022058_-	NA|419aa|up_9|NC_017351.1_2008645_2009902_-	pfam02073, Peptidase_M29, Thermophilic metalloprotease (M29)	NA|67aa|up_8|NC_017351.1_2009904_2010105_-	COG4840, COG4840, Uncharacterized protein conserved in bacteria [Function unknown]	NA|155aa|up_7|NC_017351.1_2010251_2010716_+	cd16343, LMWPTP, Low molecular weight protein tyrosine phosphatase	NA|92aa|up_6|NC_017351.1_2010722_2010998_+	NA	NA|406aa|up_5|NC_017351.1_2011275_2012493_+	COG1295, Rbn, Ribonuclease BN family enzyme [Replication, recombination, and repair]	NA|210aa|up_4|NC_017351.1_2012604_2013234_-	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|348aa|up_3|NC_017351.1_2013223_2014267_-	COG4585, COG4585, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|234aa|up_2|NC_017351.1_2014263_2014965_-	COG4758, COG4758, Predicted membrane protein [Function unknown]	NA|129aa|up_1|NC_017351.1_2014979_2015366_-	NA	NA|253aa|up_0|NC_017351.1_2015582_2016341_-	PRK05716, PRK05716, methionine aminopeptidase; Validated	NA|329aa|down_0|NC_017351.1_2016930_2017917_+	COG4129, COG4129, Predicted membrane protein [Function unknown]	NA|138aa|down_1|NC_017351.1_2018406_2018820_-	NA	NA|244aa|down_2|NC_017351.1_2019045_2019777_-	COG3442, COG3442, Predicted glutamine amidotransferase [General function prediction only]	NA|438aa|down_3|NC_017351.1_2019778_2021092_-	COG0769, MurE, UDP-N-acetylmuramyl tripeptide synthase [Cell envelope biogenesis, outer membrane]	NA|167aa|down_4|NC_017351.1_2021383_2021884_+	COG1528, Ftn, Ferritin-like protein [Inorganic ion transport and metabolism]	NA|31aa|down_5|NC_017351.1_2021965_2022058_-	NA	DEDDh|185aa|down_6|NC_017351.1_2022272_2022827_+	cd06130, DNA_pol_III_epsilon_like, an uncharacterized bacterial subgroup of the DEDDh 3'-5' exonuclease domain family with similarity to the epsilon subunit of DNA polymerase III	NA|357aa|down_7|NC_017351.1_2022893_2023964_-	PRK02406, PRK02406, DNA polymerase IV; Validated	NA|177aa|down_8|NC_017351.1_2024210_2024741_-	pfam11667, DUF3267, Putative zincin peptidase	NA|454aa|down_9|NC_017351.1_2024910_2026272_-	COG2265, TrmA, SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
GCF_000239235.1_ASM23923v1	NC_017351	Staphylococcus aureus subsp. aureus 11819-97, complete sequence	6	2262006-2262092	5	CRISPRCasFinder	no	csa3	WYL,cas3,DEDDh,DinG,csa3,RT	Type I-A	GCCAACTGATGTTTGCGTATCATTAGT	27	0	0	NA	NA	NA	1	1	Orphan	WYL,cas3,DEDDh,DinG,csa3,RT	NA|364aa|up_9|NC_017351.1_2248509_2249601_+,NA|35aa|up_8|NC_017351.1_2250100_2250205_-,NA|53aa|up_7|NC_017351.1_2250884_2251043_+,NA	NA|364aa|up_9|NC_017351.1_2248509_2249601_+	NA	NA|35aa|up_8|NC_017351.1_2250100_2250205_-	NA	NA|53aa|up_7|NC_017351.1_2250884_2251043_+	NA	NA|286aa|up_6|NC_017351.1_2251700_2252558_-	COG0561, Cof, Predicted hydrolases of the HAD superfamily [General function prediction only]	NA|261aa|up_5|NC_017351.1_2252625_2253408_-	COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]	NA|602aa|up_4|NC_017351.1_2253639_2255445_-	PRK00331, PRK00331, isomerizing glutamine--fructose-6-phosphate transaminase	NA|513aa|up_3|NC_017351.1_2256125_2257664_+	COG2213, MtlA, Phosphotransferase system, mannitol-specific IIBC component [Carbohydrate transport and metabolism]	NA|711aa|up_2|NC_017351.1_2257698_2259831_+	COG3711, BglG, Transcriptional antiterminator [Transcription]	NA|145aa|up_1|NC_017351.1_2259842_2260277_+	COG4668, MtlA, Mannitol/fructose-specific phosphotransferase system, IIA domain [Carbohydrate transport and metabolism]	NA|369aa|up_0|NC_017351.1_2260276_2261383_+	PRK02318, PRK02318, mannitol-1-phosphate 5-dehydrogenase; Provisional	NA|452aa|down_0|NC_017351.1_2269488_2270844_-	PRK14316, glmM, phosphoglucosamine mutase; Provisional	NA|311aa|down_1|NC_017351.1_2270870_2271803_-	COG4856, COG4856, Uncharacterized protein conserved in bacteria [Function unknown]	NA|270aa|down_2|NC_017351.1_2271804_2272614_-	COG1624, COG1624, Uncharacterized conserved protein [Function unknown]	NA|303aa|down_3|NC_017351.1_2272802_2273711_-	cd09989, Arginase, Arginase family	NA|355aa|down_4|NC_017351.1_2279905_2280970_-	pfam10609, ParA, NUBPL iron-transfer P-loop NTPase	NA|481aa|down_5|NC_017351.1_2281117_2282560_-	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily	NA|158aa|down_6|NC_017351.1_2282882_2283356_-	pfam17080, SepA, Multidrug Resistance efflux pump	NA|448aa|down_7|NC_017351.1_2283454_2284798_-	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily	NA|228aa|down_8|NC_017351.1_2284974_2285658_-	COG1272, COG1272, Predicted membrane protein, hemolysin III homolog [General function prediction only]	NA|396aa|down_9|NC_017351.1_2285676_2286864_-	cd04193, UDPGlcNAc_PPase, UDPGlcNAc pyrophosphorylase catalayzes the synthesis of UDPGlcNAc
GCF_000239235.1_ASM23923v1	NC_017351	Staphylococcus aureus subsp. aureus 11819-97, complete sequence	7	2485915-2486008	6	CRISPRCasFinder	no		WYL,cas3,DEDDh,DinG,csa3,RT	Orphan	GCGCATGCATAAAAGCCCCTAACAACCAGAGGT	33	0	0	NA	NA	NA	1	1	Orphan	WYL,cas3,DEDDh,DinG,csa3,RT	NA|39aa|up_9|NC_017351.1_2475046_2475163_-,NA	NA|39aa|up_9|NC_017351.1_2475046_2475163_-	NA	NA|144aa|up_8|NC_017351.1_2475267_2475699_-	pfam11070, DUF2871, Protein of unknown function (DUF2871)	NA|426aa|up_7|NC_017351.1_2475905_2477183_-	COG1511, COG1511, Predicted membrane protein [Function unknown]	NA|208aa|up_6|NC_017351.1_2477343_2477967_+	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|315aa|up_5|NC_017351.1_2478012_2478957_+	cd12827, EcCorA_ZntB-like_u2, uncharacterized bacterial subfamily of the Escherichia coli CorA-Salmonella typhimurium ZntB family	NA|481aa|up_4|NC_017351.1_2479042_2480485_-	TIGR01996, Includes:_Phosphotransferase_enzyme_IIB_component, PTS system, sucrose-specific IIBC component	NA|128aa|up_3|NC_017351.1_2480667_2481051_+	pfam08349, DUF1722, Protein of unknown function (DUF1722)	NA|702aa|up_2|NC_017351.1_2482538_2484644_+	COG2207, AraC, AraC-type DNA-binding domain-containing proteins [Transcription]	NA|141aa|up_1|NC_017351.1_2484714_2485137_+	COG3871, COG3871, Uncharacterized stress protein (general stress protein 26) [General function prediction only]	NA|119aa|up_0|NC_017351.1_2485401_2485758_+	pfam16230, DUF4889, Domain of unknown function (DUF4889)	NA|426aa|down_0|NC_017351.1_2486040_2487318_-	PRK11283, gltP, glutamate/aspartate:proton symporter; Provisional	NA|122aa|down_1|NC_017351.1_2487499_2487865_-	pfam11337, DUF3139, Protein of unknown function (DUF3139)	NA|149aa|down_2|NC_017351.1_2488262_2488709_+	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|143aa|down_3|NC_017351.1_2488924_2489353_+	cd06471, ACD_LpsHSP_like, Group of bacterial proteins containing an alpha crystallin domain (ACD) similar to Lactobacillus plantarum (Lp) small heat shock proteins (sHsp) HSP 18	NA|390aa|down_4|NC_017351.1_2489459_2490629_-	COG2223, NarK, Nitrate/nitrite transporter [Inorganic ion transport and metabolism]	NA|218aa|down_5|NC_017351.1_2491056_2491710_-	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|345aa|down_6|NC_017351.1_2491732_2492767_-	COG4585, COG4585, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|151aa|down_7|NC_017351.1_2492790_2493243_-	pfam01590, GAF, GAF domain	NA|226aa|down_8|NC_017351.1_2493262_2493940_-	pfam02665, Nitrate_red_gam, Nitrate reductase gamma subunit	NA|192aa|down_9|NC_017351.1_2493932_2494508_-	COG2180, NarJ, Nitrate reductase delta subunit [Energy production and conversion]
GCF_000239235.1_ASM23923v1	NC_017351	Staphylococcus aureus subsp. aureus 11819-97, complete sequence	8	2518928-2519025	7	CRISPRCasFinder	no		WYL,cas3,DEDDh,DinG,csa3,RT	Orphan	TTTCTGCGAATTTTATGAGCTAGAAAGGC	29	0	0	NA	NA	NA	1	1	Orphan	WYL,cas3,DEDDh,DinG,csa3,RT	NA|35aa|up_2|NC_017351.1_2516650_2516755_+,NA|35aa|down_0|NC_017351.1_2519218_2519323_-	NA|200aa|up_9|NC_017351.1_2510126_2510726_-	COG1651, DsbG, Protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]	NA|121aa|up_8|NC_017351.1_2510744_2511107_-	pfam14729, DUF4467, Domain of unknown function with cystatin-like fold (DUF4467)	NA|417aa|up_7|NC_017351.1_2511361_2512612_+	pfam02388, FemAB, FemAB family	NA|244aa|up_6|NC_017351.1_2512708_2513440_-	COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]	NA|240aa|up_5|NC_017351.1_2513436_2514156_-	COG0765, HisM, ABC-type amino acid transport system, permease component [Amino acid transport and metabolism]	NA|260aa|up_4|NC_017351.1_2514136_2514916_-	cd13711, PBP2_Ngo0372_TcyA, Substrate binding domain of ABC transporters involved in cystine import; the type 2 periplasmic binding protein fold	NA|480aa|up_3|NC_017351.1_2515036_2516476_-	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily	NA|35aa|up_2|NC_017351.1_2516650_2516755_+	NA	NA|229aa|up_1|NC_017351.1_2516908_2517595_-	PRK14119, gpmA, phosphoglyceromutase; Provisional	NA|289aa|up_0|NC_017351.1_2517921_2518788_-	COG0053, MMT1, Predicted Co/Zn/Cd cation transporters [Inorganic ion transport and metabolism]	NA|35aa|down_0|NC_017351.1_2519218_2519323_-	NA	NA|437aa|down_1|NC_017351.1_2519417_2520728_+	pfam11621, Sbi-IV, C3 binding domain 4 of IgG-bind protein SBI	NA|310aa|down_2|NC_017351.1_2521262_2522192_+	pfam07968, Leukocidin, Leukocidin/Hemolysin toxin family	NA|316aa|down_3|NC_017351.1_2522759_2523707_+	pfam07968, Leukocidin, Leukocidin/Hemolysin toxin family	NA|326aa|down_4|NC_017351.1_2523708_2524686_+	TIGR01002, synergohymenotropic_toxin, beta-channel forming cytolysin	NA|156aa|down_5|NC_017351.1_2524737_2525205_-	pfam06177, QueT, QueT transporter	NA|231aa|down_6|NC_017351.1_2525215_2525908_-	COG1424, BioW, Pimeloyl-CoA synthetase [Coenzyme metabolism]	NA|372aa|down_7|NC_017351.1_2525918_2527034_-	COG0156, BioF, 7-keto-8-aminopelargonate synthetase and related enzymes [Coenzyme metabolism]	NA|336aa|down_8|NC_017351.1_2527011_2528019_-	PRK06256, PRK06256, biotin synthase; Validated	NA|453aa|down_9|NC_017351.1_2528020_2529379_-	TIGR00508, hypothetical_protein_DESPIG_00326, adenosylmethionine-8-amino-7-oxononanoate transaminase
