The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NC_017351	Staphylococcus aureus subsp. aureus 11819-97, complete sequence	2846546	63073	69842	2846546	transposase	Streptococcus_phage(71.43%)	9	NA	NA
WP_000793446.1|63073_64003_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	42.2	1.0e-41
WP_000369394.1|63995_64733_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_000505741.1|64746_64950_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001105960.1|64979_65654_+|transposase	IS6 family transposase	transposase	A0A0N9RU54	Staphylococcus_phage	97.3	1.7e-126
WP_000627289.1|66426_66957_+	streptothricin N-acetyltransferase Sat4	NA	A0A1B0RXL7	Streptococcus_phage	97.8	1.3e-89
WP_001096887.1|67049_67844_+	aminoglycoside O-phosphotransferase APH(3')-IIIa	NA	E4ZFP6	Streptococcus_phage	100.0	2.3e-154
WP_001079938.1|68119_68692_+	HTH domain-containing protein	NA	A0A1B0RXM1	Streptococcus_phage	99.5	5.5e-102
WP_072387101.1|68664_69072_+	WYL domain-containing protein	NA	A0A1B0RXM3	Streptococcus_phage	98.3	1.1e-59
WP_000802831.1|69182_69842_+	RibD family protein	NA	A0A1B0RXM8	Streptococcus_phage	100.0	3.1e-125
>prophage 2
NC_017351	Staphylococcus aureus subsp. aureus 11819-97, complete sequence	2846546	643673	712080	2846546	holin,portal,terminase,tRNA,integrase,tail,capsid,plate,head,transposase	Staphylococcus_phage(83.33%)	92	688839:688855	716849:716865
WP_000861314.1|643673_645050_-	recombinase family protein	NA	A8R7E9	Staphylococcus_phage	98.9	2.4e-260
WP_000392109.1|645256_645937_-	type II toxin-antitoxin system PemK/MazF family toxin	NA	A0A2H4PQQ5	Staphylococcus_phage	100.0	5.1e-123
WP_000358224.1|645972_646692_-	helix-turn-helix transcriptional regulator	NA	A0A2H4PQQ2	Staphylococcus_phage	100.0	1.3e-132
WP_001198672.1|646833_647052_+	helix-turn-helix transcriptional regulator	NA	A0A2H4PQQ0	Staphylococcus_phage	100.0	1.7e-35
WP_001148566.1|647067_647856_+	phage antirepressor KilAC domain-containing protein	NA	A0EWP1	Staphylococcus_virus	100.0	4.2e-145
WP_000390105.1|647872_648067_+	hypothetical protein	NA	E9LT75	Staphylococcus_phage	100.0	1.2e-29
WP_001094942.1|648119_648335_+	hypothetical protein	NA	E9LT76	Staphylococcus_phage	100.0	2.2e-32
WP_000122246.1|648290_648536_-	hypothetical protein	NA	E9LT77	Staphylococcus_phage	100.0	6.9e-38
WP_000066020.1|648689_648851_+	DUF1270 domain-containing protein	NA	A0A2I6PDF7	Staphylococcus_phage	100.0	1.9e-20
WP_000291489.1|648945_649206_+	DUF1108 family protein	NA	A0A1W6JQ03	Staphylococcus_phage	100.0	7.6e-43
WP_001205732.1|649214_649478_+	hypothetical protein	NA	A0A2I6PDG2	Staphylococcus_phage	100.0	7.7e-43
WP_000700527.1|649486_651430_+	AAA family ATPase	NA	I1W619	Staphylococcus_phage	99.2	0.0e+00
WP_000138475.1|651431_652352_+	recombinase RecT	NA	A0A2I6PDH5	Staphylococcus_phage	100.0	2.3e-166
WP_072528355.1|652432_653050_+	MBL fold metallo-hydrolase	NA	A0A2I6PDI9	Staphylococcus_phage	99.4	2.7e-86
WP_000934800.1|653050_653521_+	single-stranded DNA-binding protein	NA	A0A1W6JPL9	Staphylococcus_phage	97.4	2.8e-80
WP_000148312.1|653550_654435_+	DnaD domain protein	NA	A0A1W6JPN9	Staphylococcus_phage	99.0	5.6e-138
WP_000338528.1|654441_654660_+	hypothetical protein	NA	A0A1P8L6E4	Staphylococcus_phage	100.0	1.4e-37
WP_000401972.1|654668_655073_+	RusA family crossover junction endodeoxyribonuclease	NA	O80087	Staphylococcus_phage	95.5	8.7e-70
WP_001140278.1|655085_655457_+	hypothetical protein	NA	A7TWN6	Staphylococcus_phage	95.1	1.3e-51
WP_001126832.1|655457_655706_+	hypothetical protein	NA	S4SVD3	Staphylococcus_phage	100.0	4.2e-43
WP_000695766.1|655718_656120_+	hypothetical protein	NA	S4V6D5	Staphylococcus_phage	99.2	2.1e-68
WP_001105616.1|656116_656482_+	hypothetical protein	NA	A7YGS3	Staphylococcus_virus	94.2	5.6e-60
WP_000714407.1|656715_656886_+	hypothetical protein	NA	A0A1W6JQ22	Staphylococcus_phage	100.0	5.7e-23
WP_001066452.1|656878_657415_+	dUTP diphosphatase	NA	A0A1W6JPM9	Staphylococcus_phage	100.0	1.2e-95
WP_000195779.1|657451_657658_+	DUF1381 domain-containing protein	NA	A0A1W6JPM8	Staphylococcus_phage	100.0	4.9e-21
WP_000132920.1|657654_657849_+	hypothetical protein	NA	S4SX95	Staphylococcus_phage	100.0	7.9e-29
WP_001072795.1|657845_658049_+	hypothetical protein	NA	A0A0N9BAX5	Staphylococcus_phage	100.0	5.2e-31
WP_000608273.1|658041_658278_+	hypothetical protein	NA	S4SWB7	Staphylococcus_phage	100.0	1.6e-36
WP_000592236.1|658270_658657_+	hypothetical protein	NA	Q4ZBK1	Staphylococcus_phage	93.8	6.4e-62
WP_000595278.1|658653_658827_+	transcriptional activator RinB	NA	A9CR97	Staphylococcus_phage	98.2	1.7e-22
WP_000455357.1|658827_659193_+	hypothetical protein	NA	I1W652	Staphylococcus_phage	100.0	1.3e-59
WP_000990005.1|659193_659340_+	hypothetical protein	NA	B2ZYX7	Staphylococcus_phage	100.0	2.2e-15
WP_000162696.1|659363_659786_+	RinA family phage transcriptional activator	NA	S4V7K2	Staphylococcus_phage	100.0	1.6e-74
WP_001003272.1|659972_660413_+|terminase	terminase small subunit	terminase	Q8SDV0	Staphylococcus_phage	100.0	2.8e-74
WP_000169946.1|660399_661677_+|terminase	PBSX family phage terminase large subunit	terminase	A0EWS5	Staphylococcus_virus	100.0	3.0e-249
WP_000921875.1|661687_663226_+|portal	phage portal protein	portal	S4V6D8	Staphylococcus_phage	99.0	1.9e-290
WP_001668926.1|663232_664228_+|capsid	minor capsid protein	capsid	B2ZYY2	Staphylococcus_phage	100.0	3.4e-184
WP_000072202.1|664300_664471_+	hypothetical protein	NA	B2ZYY3	Staphylococcus_phage	100.0	6.7e-24
WP_000392143.1|664579_665200_+	DUF4355 domain-containing protein	NA	B2ZYY4	Staphylococcus_phage	99.0	8.6e-77
WP_000438513.1|665213_666188_+|capsid	phage major capsid protein	capsid	S4V686	Staphylococcus_phage	100.0	1.7e-183
WP_001114085.1|666209_666497_+	hypothetical protein	NA	S4V6D9	Staphylococcus_phage	100.0	4.7e-46
WP_000208960.1|666505_666838_+|head,tail	phage head-tail connector protein	head,tail	A0A0F6N3F4	Staphylococcus_phage	100.0	5.5e-54
WP_001268313.1|666834_667137_+	hypothetical protein	NA	A4ZFB6	Staphylococcus_virus	99.0	7.4e-50
WP_001017815.1|667136_667484_+	HK97 gp10 family phage protein	NA	A0A0F6N3F5	Staphylococcus_phage	100.0	4.1e-60
WP_000188649.1|667495_667879_+	hypothetical protein	NA	A0A0F6N3L1	Staphylococcus_phage	100.0	1.5e-68
WP_000002578.1|667897_668479_+|tail	phage major tail protein, TP901-1 family	tail	A0EWT6	Staphylococcus_virus	100.0	1.8e-105
WP_001100163.1|668541_668907_+|tail	tail assembly chaperone	tail	Q8SDT9	Staphylococcus_phage	100.0	2.8e-59
WP_000105584.1|668936_669281_+	hypothetical protein	NA	A0A0F6N3F7	Staphylococcus_phage	100.0	2.5e-57
WP_000141466.1|669297_672762_+	hypothetical protein	NA	B2ZYZ4	Staphylococcus_phage	95.4	2.9e-262
WP_000350680.1|672774_673722_+|tail	phage tail family protein	tail	Q8SDT6	Staphylococcus_phage	100.0	2.1e-183
WP_000152714.1|673730_675632_+|tail	phage tail protein	tail	I1W634	Staphylococcus_phage	99.8	0.0e+00
WP_000369012.1|675646_677557_+	hypothetical protein	NA	B2ZYZ7	Staphylococcus_phage	99.8	0.0e+00
WP_000259632.1|677556_679380_+|plate	BppU family phage baseplate upper protein	plate	B2ZYZ8	Staphylococcus_phage	100.0	0.0e+00
WP_000705896.1|679379_679757_+	DUF2977 domain-containing protein	NA	A0A0F6N3G4	Staphylococcus_phage	100.0	1.5e-60
WP_000782200.1|679760_679934_+	XkdX family protein	NA	A0A0F6N3L7	Staphylococcus_phage	100.0	6.6e-27
WP_000466778.1|679973_680273_+	DUF2951 domain-containing protein	NA	A0A0H4ITZ0	Staphylococcus_phage	100.0	7.6e-47
WP_000524022.1|680409_682308_+	glucosaminidase domain-containing protein	NA	A0EX80	Staphylococcus_virus	99.7	0.0e+00
WP_000276650.1|682320_683559_+|plate	BppU family phage baseplate upper protein	plate	Q4ZB96	Staphylococcus_virus	99.5	1.0e-209
WP_000387943.1|683563_683959_+	hypothetical protein	NA	A0A0H4IPB8	Staphylococcus_phage	97.7	8.8e-67
WP_000354128.1|684013_684451_+|holin	phage holin	holin	S4SVG2	Staphylococcus_phage	99.3	4.1e-73
WP_001148134.1|684431_685877_+	SH3 domain-containing protein	NA	Q4ZB16	Staphylococcus_virus	99.8	2.4e-295
WP_000125171.1|686405_686612_+	hypothetical protein	NA	A0A2H4PQT0	Staphylococcus_phage	100.0	9.9e-30
WP_000498229.1|686626_686827_+	hypothetical protein	NA	A0A2H4PQS9	Staphylococcus_phage	100.0	3.5e-32
WP_001047239.1|687010_687451_-	Rrf2 family transcriptional regulator	NA	NA	NA	NA	NA
WP_001788276.1|687508_687610_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000020803.1|688075_689482_+|transposase	transposase	transposase	NA	NA	NA	NA
688839:688855	attL	AATATATAAATGACAAT	NA	NA	NA	NA
WP_014533155.1|689485_690106_+	DUF443 family protein	NA	NA	NA	NA	NA
WP_001834198.1|690180_690810_+	DUF443 domain-containing protein	NA	NA	NA	NA	NA
WP_001788281.1|690866_690983_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000882092.1|691005_691626_+	DUF443 family protein	NA	NA	NA	NA	NA
WP_000226989.1|691765_692398_+	DUF443 family protein	NA	NA	NA	NA	NA
WP_000808903.1|692845_693784_+	aldo/keto reductase	NA	NA	NA	NA	NA
WP_000633782.1|693992_694529_+	flavodoxin family protein	NA	NA	NA	NA	NA
WP_000477505.1|694696_695173_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_000180145.1|695212_696508_+	HD domain-containing protein	NA	E3T4P8	Cafeteria_roenbergensis_virus	27.9	2.1e-24
WP_001792725.1|696535_697057_+	YwhD family protein	NA	NA	NA	NA	NA
WP_001200748.1|697555_698566_+	alcohol dehydrogenase AdhP	NA	A0A2K9L339	Tupanvirus	27.3	5.6e-33
WP_000359086.1|698841_699258_+	DUF1934 domain-containing protein	NA	NA	NA	NA	NA
WP_001021139.1|699254_700916_+|tRNA	arginine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_000901764.1|701249_701885_+	endonuclease III domain-containing protein	NA	NA	NA	NA	NA
WP_000749059.1|702201_703089_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_001790232.1|703236_704187_+	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_000365354.1|704241_704961_+	HAD family hydrolase	NA	NA	NA	NA	NA
WP_000362967.1|704944_705745_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_000735558.1|705880_706387_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001222133.1|706548_707265_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001045423.1|707433_708222_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_001018677.1|708470_708845_-	transcriptional regulator	NA	NA	NA	NA	NA
WP_001813815.1|709792_710722_-	DMT family transporter	NA	NA	NA	NA	NA
WP_000169042.1|710916_711141_-	DUF2922 domain-containing protein	NA	NA	NA	NA	NA
WP_000036088.1|711157_711361_-	DUF1659 domain-containing protein	NA	NA	NA	NA	NA
WP_001044915.1|711519_712080_+|integrase	tyrosine-type recombinase/integrase	integrase	A0A141E172	Streptococcus_phage	35.1	5.7e-19
716849:716865	attR	ATTGTCATTTATATATT	NA	NA	NA	NA
>prophage 3
NC_017351	Staphylococcus aureus subsp. aureus 11819-97, complete sequence	2846546	796191	804011	2846546		Hokovirus(16.67%)	10	NA	NA
WP_000244415.1|796191_797247_-	two-component system sensor histidine kinase SaeS	NA	A0A1V0SGX0	Hokovirus	29.8	3.6e-14
WP_000149344.1|797246_797933_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_001037807.1|797907_798381_-	DoxX family protein	NA	NA	NA	NA	NA
WP_001093560.1|798722_799163_-	DM13 domain-containing protein	NA	NA	NA	NA	NA
WP_000604990.1|799442_800027_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001062965.1|800125_800839_-	7-carboxy-7-deazaguanine synthase QueE	NA	A0A1U9WRB6	Streptococcus_virus	43.5	1.1e-51
WP_000941340.1|800842_801262_-	6-carboxytetrahydropterin synthase QueD	NA	S4U060	uncultured_phage	28.7	6.3e-07
WP_000446724.1|801263_801932_-	7-cyano-7-deazaguanine synthase QueC	NA	A0A2H4J8Q7	uncultured_Caudovirales_phage	57.5	9.6e-66
WP_000604515.1|802282_802876_+	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	43.5	1.2e-38
WP_001217797.1|802859_804011_+	anthranilate synthase component I family protein	NA	S4VNU7	Pandoravirus	36.1	2.1e-23
>prophage 4
NC_017351	Staphylococcus aureus subsp. aureus 11819-97, complete sequence	2846546	815983	830312	2846546		uncultured_Caudovirales_phage(50.0%)	14	NA	NA
WP_000663035.1|815983_817042_+	histidinol-phosphate transaminase	NA	A0A1X6WGT4	Pacmanvirus	26.7	6.1e-22
WP_000197262.1|817380_817923_+	5'-3'-deoxyribonucleotidase	NA	NA	NA	NA	NA
WP_000429006.1|818489_819407_-	diacylglycerol kinase family lipid kinase	NA	A0A1V0SBJ0	Catovirus	22.0	2.1e-07
WP_031835073.1|819497_819599_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000193751.1|819676_821182_-	peptide MFS transporter	NA	A0A0P0IY73	Acinetobacter_phage	32.2	2.0e-58
WP_000930014.1|821522_822023_-	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	E7DN65	Pneumococcus_phage	71.5	5.9e-52
WP_001068497.1|822042_822909_-	DMT family transporter	NA	NA	NA	NA	NA
WP_000692521.1|823709_824108_+	class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	NA	A0A2H4J545	uncultured_Caudovirales_phage	72.0	1.2e-52
WP_000855505.1|824070_826176_+	class 1b ribonucleoside-diphosphate reductase subunit alpha	NA	A0A2H4J2N6	uncultured_Caudovirales_phage	91.7	0.0e+00
WP_000562498.1|826293_827265_+	class 1b ribonucleoside-diphosphate reductase subunit beta	NA	A0A2H4J4P3	uncultured_Caudovirales_phage	91.3	4.2e-171
WP_000499195.1|827445_827601_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000876319.1|827639_828611_+	ABC transporter permease	NA	A0A2H4IY97	uncultured_Caudovirales_phage	78.6	1.6e-138
WP_001245577.1|828597_829554_+	iron chelate uptake ABC transporter family permease subunit	NA	A0A2H4J116	uncultured_Caudovirales_phage	57.8	1.2e-05
WP_000616840.1|829550_830312_+	ABC transporter ATP-binding protein	NA	Q9EMR9	Amsacta_moorei_entomopoxvirus	31.6	6.5e-18
>prophage 5
NC_017351	Staphylococcus aureus subsp. aureus 11819-97, complete sequence	2846546	1001482	1055271	2846546	tRNA,bacteriocin,protease	Streptococcus_phage(33.33%)	53	NA	NA
WP_000448934.1|1001482_1002472_-|tRNA	tryptophan--tRNA ligase	tRNA	NA	NA	NA	NA
WP_000258003.1|1002766_1003162_+	transcriptional regulator Spx	NA	NA	NA	NA	NA
WP_001217730.1|1003532_1004252_+	adaptor protein MecA	NA	NA	NA	NA	NA
WP_000959289.1|1004372_1005359_+	competence protein CoiA	NA	NA	NA	NA	NA
WP_000082731.1|1005406_1007215_+	oligoendopeptidase F	NA	A0A1X9I5X5	Streptococcus_phage	24.4	9.3e-47
WP_000896697.1|1007674_1008481_-|protease	protease adaptor protein YjbH	protease	NA	NA	NA	NA
WP_000214070.1|1008503_1008869_-	truncated hemoglobin	NA	NA	NA	NA	NA
WP_000224619.1|1008972_1009566_-	CYTH domain-containing protein	NA	NA	NA	NA	NA
WP_001242102.1|1009751_1010099_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001077683.1|1010115_1010751_+	GTP pyrophosphokinase family protein	NA	NA	NA	NA	NA
WP_001270834.1|1010767_1011577_+	NAD kinase	NA	NA	NA	NA	NA
WP_000669940.1|1011573_1012428_+	RluA family pseudouridine synthase	NA	NA	NA	NA	NA
WP_000062417.1|1012448_1013834_+	magnesium transporter	NA	NA	NA	NA	NA
WP_000395153.1|1013843_1015688_+	monovalent cation:proton antiporter family protein	NA	NA	NA	NA	NA
WP_000933195.1|1015965_1016736_+	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_000933105.1|1016930_1018016_-	AI-2E family transporter	NA	NA	NA	NA	NA
WP_000570688.1|1018357_1019926_+	alanine:cation symporter family protein	NA	NA	NA	NA	NA
WP_000889184.1|1020069_1020828_+	esterase family protein	NA	NA	NA	NA	NA
WP_000600392.1|1021021_1021531_+	YjcG family protein	NA	NA	NA	NA	NA
WP_001154233.1|1021643_1022834_-	MFS transporter	NA	NA	NA	NA	NA
WP_000258650.1|1022811_1023987_-	diglucosyl diacylglycerol synthase	NA	NA	NA	NA	NA
WP_000340119.1|1024419_1025904_+	UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L- lysine ligase	NA	NA	NA	NA	NA
WP_001795833.1|1025884_1026145_+	YueH family protein	NA	NA	NA	NA	NA
WP_001049951.1|1026144_1027707_+	peptide chain release factor 3	NA	A0A1S5SF82	Streptococcus_phage	28.2	1.7e-36
WP_000928413.1|1028008_1028812_+	TerC family protein	NA	S5MAL1	Bacillus_phage	40.5	1.6e-30
WP_016169326.1|1029030_1031355_+|protease	serine protease	protease	W5SAB9	Pithovirus	27.4	2.8e-11
WP_000021864.1|1031371_1032730_+	TrkH family potassium uptake protein	NA	NA	NA	NA	NA
WP_000414178.1|1032868_1034380_+	bifunctional metallophosphatase/5'-nucleotidase	NA	NA	NA	NA	NA
WP_000287265.1|1034866_1035436_-	competence protein ComK	NA	NA	NA	NA	NA
WP_000876826.1|1035645_1035864_+	IDEAL domain-containing protein	NA	NA	NA	NA	NA
WP_000668820.1|1035944_1036931_-	lipoate--protein ligase	NA	NA	NA	NA	NA
WP_000214898.1|1037129_1037306_+	YkvS family protein	NA	NA	NA	NA	NA
WP_001033865.1|1037320_1037923_+|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_001790623.1|1038839_1038941_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001790097.1|1038950_1039223_+|bacteriocin	lactococcin 972 family bacteriocin	bacteriocin	NA	NA	NA	NA
WP_000870806.1|1039266_1041231_+|bacteriocin	bacteriocin-associated integral membrane family protein	bacteriocin	NA	NA	NA	NA
WP_000668623.1|1041233_1041554_+	YxeA family protein	NA	NA	NA	NA	NA
WP_000571178.1|1041550_1042192_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.7	2.2e-19
WP_012840518.1|1042279_1042546_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000410720.1|1042848_1043136_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000719182.1|1043141_1044623_+	glycosyltransferase	NA	NA	NA	NA	NA
WP_000766009.1|1044711_1045068_-	DoxX family protein	NA	NA	NA	NA	NA
WP_001081347.1|1045555_1046515_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_020978112.1|1046560_1046692_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000867357.1|1046755_1046971_-	TM2 domain-containing protein	NA	A0A060AN66	Enterococcus_phage	49.1	1.5e-07
WP_000620949.1|1047135_1047687_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_000070966.1|1047738_1048677_-	1,4-dihydroxy-2-naphthoate polyprenyltransferase	NA	NA	NA	NA	NA
WP_000190621.1|1048858_1050220_+	isochorismate synthase MenF	NA	NA	NA	NA	NA
WP_000526687.1|1050206_1051880_+	2-succinyl-5-enolpyruvyl-6-hydroxy-3- cyclohexene-1-carboxylic-acid synthase	NA	NA	NA	NA	NA
WP_000150199.1|1051866_1052670_+	2-succinyl-6-hydroxy-2, 4-cyclohexadiene-1-carboxylate synthase	NA	NA	NA	NA	NA
WP_000184947.1|1052662_1053484_+	1,4-dihydroxy-2-naphthoyl-CoA synthase	NA	NA	NA	NA	NA
WP_000284457.1|1053722_1054052_-	staphostatin B	NA	NA	NA	NA	NA
WP_001088782.1|1054089_1055271_-|protease	cysteine protease staphopain B	protease	NA	NA	NA	NA
>prophage 6
NC_017351	Staphylococcus aureus subsp. aureus 11819-97, complete sequence	2846546	1075499	1083972	2846546		Synechococcus_phage(33.33%)	9	NA	NA
WP_000861572.1|1075499_1075982_+	5-(carboxyamino)imidazole ribonucleotide mutase	NA	A0A2P0VNU7	Tetraselmis_virus	44.7	6.2e-22
WP_001010406.1|1075968_1077093_+	5-(carboxyamino)imidazole ribonucleotide synthase	NA	NA	NA	NA	NA
WP_000174053.1|1077096_1077801_+	phosphoribosylaminoimidazolesuccinocarboxamide synthase	NA	M4R1E8	Synechococcus_phage	42.1	7.3e-48
WP_000848350.1|1077800_1078064_+	phosphoribosylformylglycinamidine synthase subunit PurS	NA	NA	NA	NA	NA
WP_000666798.1|1078065_1078737_+	phosphoribosylformylglycinamidine synthase I	NA	NA	NA	NA	NA
WP_000032727.1|1078729_1080919_+	phosphoribosylformylglycinamidine synthase subunit PurL	NA	A6N228	Microbacterium_phage	39.7	1.0e-140
WP_000483713.1|1080897_1082382_+	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	31.7	3.2e-45
WP_000030803.1|1082374_1083403_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	41.7	3.4e-62
WP_000238658.1|1083405_1083972_+	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	40.7	9.4e-30
>prophage 7
NC_017351	Staphylococcus aureus subsp. aureus 11819-97, complete sequence	2846546	1522922	1610092	2846546	holin,capsid,portal,terminase,tRNA,protease,tail,plate,head	Staphylococcus_phage(83.12%)	103	NA	NA
WP_000858789.1|1522922_1524215_-|tRNA	asparagine--tRNA ligase	tRNA	A0A2P1EMB4	Moumouvirus	30.0	1.9e-54
WP_000525078.1|1524536_1527230_-	ATP-dependent helicase DinG	NA	A0A1X9I5C8	Streptococcus_phage	34.4	8.2e-47
WP_000049918.1|1527253_1528225_-	biotin--[acetyl-CoA-carboxylase] ligase	NA	NA	NA	NA	NA
WP_000361557.1|1528211_1529414_-|tRNA	CCA tRNA nucleotidyltransferase	tRNA	H7BUW3	unidentified_phage	42.5	2.4e-35
WP_000690027.1|1529418_1530561_-	N-acetyl-alpha-D-glucosaminyl L-malate synthase BshA	NA	NA	NA	NA	NA
WP_000839931.1|1530801_1531119_-	nucleotide pyrophosphohydrolase	NA	NA	NA	NA	NA
WP_031774998.1|1531454_1532135_-	zinc metallopeptidase	NA	NA	NA	NA	NA
WP_000154684.1|1532206_1532794_-	DUF1405 domain-containing protein	NA	NA	NA	NA	NA
WP_000005212.1|1532783_1533359_-	YpiB family protein	NA	G3MAV7	Bacillus_virus	27.2	2.1e-08
WP_000389534.1|1533372_1534617_-	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_000245894.1|1534623_1535922_-	3-phosphoshikimate 1-carboxyvinyltransferase	NA	NA	NA	NA	NA
WP_000776323.1|1535931_1536996_-	3-dehydroquinate synthase	NA	NA	NA	NA	NA
WP_001269920.1|1537021_1538188_-	chorismate synthase	NA	A0A291AU41	Pandoravirus	31.8	5.8e-34
WP_000789521.1|1538586_1538775_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000442480.1|1538983_1539433_-	nucleoside-diphosphate kinase	NA	D2E8E1	Anguillid_herpesvirus	43.8	2.4e-28
WP_001096479.1|1539524_1540484_-	polyprenyl synthetase family protein	NA	A0A1V0SE37	Indivirus	24.4	1.3e-10
WP_000774684.1|1540485_1541211_-	demethylmenaquinone methyltransferase	NA	NA	NA	NA	NA
WP_000450555.1|1541213_1541786_-	heptaprenyl diphosphate synthase component 1	NA	NA	NA	NA	NA
WP_001043863.1|1542216_1542489_-	HU family DNA-binding protein	NA	A7KV42	Bacillus_phage	73.3	4.2e-28
WP_000161738.1|1542659_1543658_-	NAD(P)H-dependent glycerol-3-phosphate dehydrogenase	NA	NA	NA	NA	NA
WP_000165530.1|1543674_1544985_-	ribosome biogenesis GTPase Der	NA	NA	NA	NA	NA
WP_000133955.1|1545206_1546382_-	30S ribosomal protein S1	NA	NA	NA	NA	NA
WP_000644391.1|1547079_1547739_-	(d)CMP kinase	NA	NA	NA	NA	NA
WP_000681756.1|1547815_1548784_+	asparaginase	NA	NA	NA	NA	NA
WP_001174260.1|1548898_1549885_-	YpdA family putative bacillithiol disulfide reductase	NA	NA	NA	NA	NA
WP_031864479.1|1550045_1550162_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000069294.1|1550286_1551747_-	elastin-binding protein EbpS	NA	NA	NA	NA	NA
WP_000902101.1|1551899_1553279_-	ATP-dependent DNA helicase RecQ	NA	L7RCS0	Acanthamoeba_polyphaga_moumouvirus	33.3	6.4e-56
WP_001163803.1|1553268_1554222_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_001151997.1|1554329_1554578_+	ferredoxin	NA	A0A127AYY7	Bacillus_phage	48.0	8.3e-15
WP_001186901.1|1554683_1555229_-	ECF transporter S component	NA	NA	NA	NA	NA
WP_000913220.1|1555837_1556752_-	DUF1672 domain-containing protein	NA	NA	NA	NA	NA
WP_172609139.1|1556826_1556979_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000476884.1|1556965_1557880_-	DUF1672 domain-containing protein	NA	NA	NA	NA	NA
WP_000476850.1|1557937_1558843_-	DUF1672 domain-containing protein	NA	NA	NA	NA	NA
WP_000470336.1|1558933_1559119_-	hypothetical protein	NA	A0ZS61	Staphylococcus_virus	100.0	1.7e-25
WP_024937002.1|1559367_1560351_-	Panton-Valentine bi-component leukocidin subunit F	NA	A0A2I6PEU3	Staphylococcus_phage	100.0	4.0e-185
WP_000239544.1|1560346_1561285_-	Panton-Valentine bi-component leukocidin subunit S	NA	A0A2I6PF61	Staphylococcus_phage	100.0	1.7e-180
WP_000909199.1|1561674_1563129_-	N-acetylmuramoyl-L-alanine amidase	NA	R4WAL6	Staphylococcus_phage	100.0	4.4e-289
WP_000339141.1|1563139_1563442_-|holin	phage holin	holin	A0A2I6PF56	Staphylococcus_phage	100.0	3.1e-48
WP_000466784.1|1563577_1563877_-	DUF2951 domain-containing protein	NA	A0A2I6PER2	Staphylococcus_phage	100.0	2.0e-31
WP_000916020.1|1563922_1564087_-	XkdX family protein	NA	A0A2I6PES4	Staphylococcus_phage	100.0	4.9e-24
WP_001166599.1|1564079_1564469_-	DUF2977 domain-containing protein	NA	A0A2I6PER1	Staphylococcus_phage	100.0	2.2e-62
WP_000067154.1|1564468_1565935_-|plate	phage baseplate upper protein	plate	A0A2I6PEI6	Staphylococcus_phage	100.0	3.1e-274
WP_000429549.1|1565934_1567845_-	hypothetical protein	NA	R4WAL5	Staphylococcus_phage	100.0	0.0e+00
WP_000179864.1|1567860_1568151_-	hypothetical protein	NA	R4WEC3	Staphylococcus_phage	100.0	2.1e-49
WP_000384478.1|1568150_1569734_-|tail	phage tail protein	tail	R4WCV5	Staphylococcus_phage	100.0	3.2e-309
WP_001190531.1|1569742_1570567_-|tail	phage tail family protein	tail	R4WAV3	Staphylococcus_phage	100.0	4.1e-159
WP_001003447.1|1570566_1576743_-|tail	phage tail tape measure protein	tail	R4WAN6	Staphylococcus_phage	99.8	0.0e+00
WP_000438833.1|1576756_1576915_-	hypothetical protein	NA	A0A2I6PES8	Staphylococcus_phage	100.0	1.2e-19
WP_000589166.1|1576965_1577307_-	hypothetical protein	NA	A0A2I6PEQ2	Staphylococcus_phage	100.0	1.5e-54
WP_000169128.1|1577364_1577820_-	Ig domain-containing protein	NA	A0A2I6PF45	Staphylococcus_phage	100.0	1.3e-77
WP_000807536.1|1577911_1578553_-|tail	tail protein	tail	A0A2I6PEP6	Staphylococcus_phage	100.0	5.9e-121
WP_001023809.1|1578587_1578983_-	hypothetical protein	NA	R4WAV1	Staphylococcus_phage	100.0	6.7e-67
WP_000110019.1|1578983_1579385_-	hypothetical protein	NA	R4WAN5	Staphylococcus_phage	100.0	8.1e-68
WP_000395499.1|1579381_1579714_-	hypothetical protein	NA	A0A2I6PEH8	Staphylococcus_phage	100.0	3.1e-57
WP_000050977.1|1579725_1580004_-|head,tail	phage gp6-like head-tail connector protein	head,tail	R4WAL3	Staphylococcus_phage	100.0	3.5e-46
WP_001142734.1|1580072_1581236_-|capsid	phage major capsid protein	capsid	A0A2I6PEQ3	Staphylococcus_phage	100.0	1.2e-217
WP_000061873.1|1581247_1582021_-|protease	Clp protease ClpP	protease	R4WCV0	Staphylococcus_phage	100.0	1.4e-137
WP_001100669.1|1582004_1583243_-|portal	phage portal protein	portal	A0A2K9VBP0	Staphylococcus_phage	100.0	6.9e-235
WP_000153551.1|1583247_1584939_-|terminase	terminase large subunit	terminase	A0A2I6PE99	Staphylococcus_phage	99.8	0.0e+00
WP_000778933.1|1584928_1585234_-|terminase	P27 family phage terminase small subunit	terminase	A0A2I6PEQ6	Staphylococcus_phage	100.0	2.9e-49
WP_000160685.1|1585360_1585675_-	HNH endonuclease	NA	A0A2I6PED2	Staphylococcus_phage	100.0	8.5e-57
WP_000528510.1|1585831_1586269_-	transcriptional regulator	NA	R4WCU7	Staphylococcus_phage	100.0	1.8e-76
WP_001793488.1|1586281_1587649_-	DEAD/DEAH box helicase	NA	A0A2I6PE95	Staphylococcus_phage	100.0	1.7e-263
WP_000665203.1|1587629_1587920_-	VRR-NUC domain-containing protein	NA	A0A2I6PEN7	Staphylococcus_phage	100.0	6.5e-51
WP_001801650.1|1588053_1588152_+	hypothetical protein	NA	A0A2I6PDP6	Staphylococcus_phage	100.0	3.7e-11
WP_000884844.1|1588260_1590708_-	virulence-associated E family protein	NA	R4WAL1	Staphylococcus_phage	100.0	0.0e+00
WP_000265256.1|1590759_1590960_-	DUF1514 family protein	NA	A0A2I6PEG6	Staphylococcus_phage	100.0	2.9e-26
WP_000237866.1|1591027_1591180_-	transcriptional activator RinB	NA	A0A2I6PF16	Staphylococcus_phage	98.0	5.8e-19
WP_001125019.1|1591182_1591383_-	hypothetical protein	NA	A0A2I6PEF3	Staphylococcus_phage	100.0	2.4e-28
WP_000195818.1|1591348_1591546_-	DUF1381 domain-containing protein	NA	A0A2I6PEH2	Staphylococcus_phage	100.0	5.7e-27
WP_001209220.1|1591562_1591736_-	hypothetical protein	NA	A0A2I6PEF5	Staphylococcus_phage	100.0	1.1e-24
WP_000181816.1|1591772_1592300_-	dUTP pyrophosphatase	NA	A0A2I6PF13	Staphylococcus_phage	100.0	1.0e-94
WP_000700108.1|1592292_1592535_-	hypothetical protein	NA	A0A2I6PF40	Staphylococcus_phage	100.0	3.7e-36
WP_000370296.1|1592524_1592761_-	DUF1024 family protein	NA	A0A2I6PF11	Staphylococcus_phage	100.0	4.0e-35
WP_001813803.1|1592753_1592921_-	hypothetical protein	NA	A0A2I6PF20	Staphylococcus_phage	100.0	3.5e-25
WP_000178883.1|1592932_1593181_-	hypothetical protein	NA	A0A2I6PF06	Staphylococcus_phage	100.0	3.6e-42
WP_000235381.1|1593189_1593390_-	hypothetical protein	NA	A0A2I6PF32	Staphylococcus_phage	100.0	1.3e-29
WP_000111488.1|1593392_1593650_-	DUF3310 domain-containing protein	NA	A0A2I6PF10	Staphylococcus_phage	100.0	5.7e-43
WP_000113978.1|1593649_1594051_-	PVL family protein	NA	R4WCU4	Staphylococcus_phage	100.0	5.6e-69
WP_001164629.1|1594050_1594236_-	DUF3113 family protein	NA	A0A2I6PEM8	Staphylococcus_phage	100.0	7.0e-27
WP_001796208.1|1594248_1596201_-	DNA polymerase	NA	A0A2I6PF18	Staphylococcus_phage	100.0	0.0e+00
WP_000645042.1|1596269_1596827_-	DUF2815 family protein	NA	A0A2I6PF05	Staphylococcus_phage	100.0	1.8e-97
WP_000762551.1|1596852_1598019_-	DUF2800 domain-containing protein	NA	R4WAL0	Staphylococcus_phage	100.0	1.8e-221
WP_000279446.1|1598015_1598378_-	hypothetical protein	NA	R4WEA8	Staphylococcus_phage	100.0	4.9e-56
WP_000175000.1|1598392_1598716_-	hypothetical protein	NA	A0A2I6PDL5	Staphylococcus_phage	100.0	1.3e-52
WP_001285955.1|1598795_1598957_-	DUF1270 family protein	NA	O80077	Staphylococcus_phage	100.0	6.6e-21
WP_001124160.1|1598969_1599233_-	helix-turn-helix domain-containing protein	NA	A7TWG0	Staphylococcus_phage	100.0	5.7e-46
WP_001036301.1|1599257_1599473_-	hypothetical protein	NA	A0A2I6PEF9	Staphylococcus_phage	100.0	1.0e-32
WP_001128433.1|1599527_1599893_+	hypothetical protein	NA	A0A2I6PF07	Staphylococcus_phage	100.0	2.4e-63
WP_001025401.1|1599861_1600107_-	DUF2829 domain-containing protein	NA	A0A2I6PF15	Staphylococcus_phage	100.0	5.1e-41
WP_000272861.1|1600122_1600371_-	helix-turn-helix transcriptional regulator	NA	A0A2I6PED6	Staphylococcus_phage	100.0	2.2e-39
WP_001260486.1|1600534_1600858_+	helix-turn-helix transcriptional regulator	NA	R4WAK9	Staphylococcus_phage	100.0	9.1e-54
WP_000525006.1|1600870_1601332_+	hypothetical protein	NA	R4WEA5	Staphylococcus_phage	100.0	1.2e-83
WP_001226136.1|1601348_1601783_+	hypothetical protein	NA	A0A2I6PED5	Staphylococcus_phage	100.0	1.1e-25
WP_000449655.1|1601811_1602207_+	hypothetical protein	NA	A0A2I6PEJ7	Staphylococcus_phage	100.0	3.8e-70
WP_001013104.1|1602296_1602443_+	hypothetical protein	NA	A0A2I6PEK8	Staphylococcus_phage	89.6	1.1e-14
WP_000191459.1|1602439_1603054_-	hypothetical protein	NA	A7TW88	Staphylococcus_phage	100.0	7.9e-107
WP_001813812.1|1604428_1606471_-	hypothetical protein	NA	B5WZK7	Staphylococcus_phage	53.2	1.5e-53
WP_014533165.1|1606457_1607390_-	DUF1672 domain-containing protein	NA	NA	NA	NA	NA
WP_000987769.1|1607634_1609386_-	two-component system sensor histidine kinase SrrB	NA	A0A1V0SGX0	Hokovirus	33.6	1.7e-21
WP_000064078.1|1609366_1610092_-	two-component system response regulator SrrA	NA	W8CYM9	Bacillus_phage	43.0	3.5e-45
>prophage 8
NC_017351	Staphylococcus aureus subsp. aureus 11819-97, complete sequence	2846546	1665212	1673542	2846546	tRNA	Staphylococcus_phage(16.67%)	7	NA	NA
WP_001213908.1|1665212_1665998_-	metal ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	28.3	8.0e-19
WP_000924214.1|1666123_1667014_-	deoxyribonuclease IV	NA	A0A2H4UU70	Bodo_saltans_virus	33.1	2.0e-26
WP_001062180.1|1667023_1668370_-	DEAD/DEAH box helicase	NA	A0A1V0SIR5	Klosneuvirus	33.7	5.3e-55
WP_000683933.1|1668483_1669584_-	Nif3-like dinuclear metal center hexameric protein	NA	A0A1S5V250	Saudi_moumouvirus	29.6	5.2e-08
WP_000624580.1|1669586_1670264_-|tRNA	tRNA (adenine-N(1))-methyltransferase	tRNA	NA	NA	NA	NA
WP_001283055.1|1670394_1671501_-	RNA polymerase sigma factor RpoD	NA	A0A2I7SAT0	Vibrio_phage	38.1	1.1e-37
WP_001217257.1|1671724_1673542_-	DNA primase	NA	A0A0K1LMQ9	Caulobacter_phage	36.3	7.9e-54
>prophage 9
NC_017351	Staphylococcus aureus subsp. aureus 11819-97, complete sequence	2846546	1742858	1751901	2846546	tRNA	uncultured_Mediterranean_phage(50.0%)	7	NA	NA
WP_000364542.1|1742858_1743377_-	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	46.5	5.6e-29
WP_000594999.1|1743398_1745672_-	single-stranded-DNA-specific exonuclease RecJ	NA	A7KV88	Bacillus_phage	29.1	2.4e-63
WP_000749795.1|1745874_1748154_-	protein translocase subunit SecDF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	35.8	1.8e-31
WP_001160682.1|1748428_1748689_-	preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	35.3	8.2e-05
WP_001112045.1|1748707_1749847_-|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.7	5.4e-85
WP_001019178.1|1749869_1750895_-|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
WP_001005767.1|1750896_1751901_-	Holliday junction branch migration DNA helicase RuvB	NA	B3GAM6	uncultured_virus	29.1	1.7e-05
>prophage 10
NC_017351	Staphylococcus aureus subsp. aureus 11819-97, complete sequence	2846546	1875484	1947654	2846546	tRNA,protease	Staphylococcus_phage(94.64%)	69	NA	NA
WP_001050536.1|1875484_1882045_-	LPXTG-anchored repetitive surface protein SasC	NA	A0A2H4PQU6	Staphylococcus_phage	98.2	2.1e-306
WP_000836465.1|1882370_1882682_-	rhodanese-like domain-containing protein	NA	A0A2H4PQR9	Staphylococcus_phage	100.0	1.6e-52
WP_001557386.1|1882703_1885121_-|tRNA	leucine--tRNA ligase	tRNA	A0A2H4PQS0	Staphylococcus_phage	99.5	0.0e+00
WP_001025061.1|1885408_1886590_-	MFS transporter	NA	A0A2H4PQR6	Staphylococcus_phage	100.0	5.6e-218
WP_000526539.1|1886699_1887653_+	TIGR01212 family radical SAM protein	NA	A0A2H4PQV5	Staphylococcus_phage	100.0	2.2e-79
WP_000764419.1|1887649_1888213_+	class I SAM-dependent methyltransferase	NA	A0A2H4PQV0	Staphylococcus_phage	99.5	8.3e-103
WP_000757543.1|1888332_1888734_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_000266096.1|1889305_1890133_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_001790712.1|1890135_1890255_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001196354.1|1890366_1891368_+	proline dehydrogenase	NA	A0A2H4PQT6	Staphylococcus_phage	99.7	9.0e-185
WP_001008551.1|1891489_1891954_-	6,7-dimethyl-8-ribityllumazine synthase	NA	A0A2H4PQS3	Staphylococcus_phage	99.4	5.8e-70
WP_001159022.1|1891966_1893148_-	3,4-dihydroxy-2-butanone-4-phosphate synthase	NA	A0A2H4PQS2	Staphylococcus_phage	99.7	6.6e-227
WP_000493892.1|1893158_1893791_-	riboflavin synthase	NA	A0A2H4PQS5	Staphylococcus_phage	99.5	1.7e-112
WP_000077358.1|1893797_1894841_-	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	NA	A0A2H4PQS8	Staphylococcus_phage	98.8	5.3e-196
WP_001261668.1|1895321_1896824_-	FAD/NAD(P)-binding protein	NA	A0A2H4PQX2	Staphylococcus_phage	98.6	1.9e-29
WP_000221177.1|1897346_1897661_+	winged helix-turn-helix transcriptional regulator	NA	A0A2H4PQT4	Staphylococcus_phage	98.1	9.8e-53
WP_000989121.1|1897660_1898953_+	arsenite efflux transporter membrane subunit ArsB	NA	A0A2H4PQU3	Staphylococcus_phage	99.5	5.0e-228
WP_001032833.1|1899039_1899894_-	glucosaminidase domain-containing protein	NA	Q4ZCC7	Staphylococcus_virus	38.6	9.8e-39
WP_000384171.1|1900169_1900394_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000671052.1|1900592_1901063_+	RNA polymerase sigma factor SigS	NA	A0A2H4PQT5	Staphylococcus_phage	99.4	1.0e-82
WP_001153742.1|1901175_1901619_+	competence protein ComK	NA	NA	NA	NA	NA
WP_001030469.1|1901605_1902049_-	hypothetical protein	NA	A0A2H4PQT8	Staphylococcus_phage	98.6	2.4e-57
WP_001168907.1|1902344_1902980_+|protease	CPBP family intramembrane metalloprotease SdpA	protease	NA	NA	NA	NA
WP_001096493.1|1903420_1904134_-	transaldolase	NA	M1PR54	Cyanophage	35.3	5.5e-19
WP_000091445.1|1904393_1904696_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001200542.1|1904951_1905317_+	fluoride efflux transporter CrcB	NA	A0A2H4PQR0	Staphylococcus_phage	100.0	3.6e-59
WP_000623478.1|1905313_1905667_+	CrcB family protein	NA	A0A2H4PQQ7	Staphylococcus_phage	100.0	2.6e-22
WP_000453323.1|1906049_1906883_-	aldo/keto reductase	NA	A0A2H4PQR8	Staphylococcus_phage	99.6	1.6e-158
WP_000366163.1|1907094_1908003_-	NERD domain-containing protein	NA	A0A2H4PQQ8	Staphylococcus_phage	100.0	3.4e-138
WP_000933822.1|1908127_1909321_-	methionine adenosyltransferase	NA	A0A2H4PQS6	Staphylococcus_phage	99.7	1.9e-218
WP_000109906.1|1909692_1911285_+	phosphoenolpyruvate carboxykinase (ATP)	NA	A0A2H4PQN1	Staphylococcus_phage	100.0	0.0e+00
WP_016169057.1|1911537_1912284_-	S9 family peptidase	NA	A0A2H4PQM6	Staphylococcus_phage	99.2	2.2e-143
WP_000672013.1|1912288_1912762_-	nucleoside triphosphatase YtkD	NA	A0A2H4PQM4	Staphylococcus_phage	98.7	7.2e-84
WP_000718107.1|1912827_1913085_+	membrane protein insertion efficiency factor YidD	NA	A0A2H4PQM5	Staphylococcus_phage	100.0	7.2e-46
WP_000778519.1|1913081_1914083_-	o-succinylbenzoate synthase	NA	A0A2H4PQM0	Staphylococcus_phage	98.2	5.7e-187
WP_000348356.1|1914087_1915566_-	o-succinylbenzoate--CoA ligase	NA	A0A2H4PQM9	Staphylococcus_phage	97.0	2.6e-281
WP_072419835.1|1915724_1916180_-	DUF4909 domain-containing protein	NA	A0A2H4PQN7	Staphylococcus_phage	97.3	5.7e-78
WP_001793444.1|1916482_1917133_+	excalibur calcium-binding domain-containing protein	NA	A0A2H4PQM8	Staphylococcus_phage	99.1	3.0e-56
WP_000070649.1|1917213_1918209_+	DUF4352 domain-containing protein	NA	A0A2H4PQN2	Staphylococcus_phage	97.2	4.2e-73
WP_000669017.1|1918282_1918909_+	hypothetical protein	NA	A0A2H4PQM7	Staphylococcus_phage	94.7	3.6e-91
WP_000627541.1|1918949_1919291_+	DUF3969 family protein	NA	A0A2H4PQN6	Staphylococcus_phage	92.0	8.1e-53
WP_000414202.1|1919391_1919964_+	hypothetical protein	NA	A0A2H4PQN4	Staphylococcus_phage	89.7	3.3e-22
WP_000731440.1|1920904_1921348_-	DUF1433 domain-containing protein	NA	NA	NA	NA	NA
WP_000439996.1|1921347_1921791_-	DUF1433 domain-containing protein	NA	NA	NA	NA	NA
WP_000877847.1|1921833_1923444_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000072638.1|1923884_1925093_-	restriction endonuclease subunit S	NA	A0A2H4PQP5	Staphylococcus_phage	33.0	3.8e-36
WP_000028606.1|1925085_1926642_-	type I restriction-modification system subunit M	NA	A0A2H4PQP4	Staphylococcus_phage	99.0	2.0e-287
WP_031864490.1|1926805_1926940_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001038691.1|1927008_1927728_-|protease	serine protease SplF	protease	A0A2H4PQP1	Staphylococcus_phage	99.2	5.4e-131
WP_011447030.1|1927829_1927937_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001038763.1|1927885_1928605_-|protease	serine protease SplD	protease	A0A2H4PQP9	Staphylococcus_phage	98.3	5.1e-129
WP_001038756.1|1928762_1929479_-|protease	serine protease	protease	A0A2H4PQN5	Staphylococcus_phage	61.3	6.7e-81
WP_001038868.1|1929602_1930322_-|protease	serine protease SplC	protease	A0A2H4PQP7	Staphylococcus_phage	98.7	5.1e-129
WP_001039446.1|1930379_1931102_-|protease	serine protease SplB	protease	A0A2H4PQN0	Staphylococcus_phage	98.8	7.1e-131
WP_001039428.1|1931226_1931934_-|protease	serine protease SplA	protease	A0A2H4PQN3	Staphylococcus_phage	98.7	1.4e-128
WP_001092772.1|1932897_1933461_+	DUF4888 domain-containing protein	NA	A0A2H4PQH6	Staphylococcus_phage	58.2	9.3e-46
WP_000586138.1|1933948_1934647_-	hypothetical protein	NA	A0A2H4PQH0	Staphylococcus_phage	95.3	1.7e-113
WP_000581552.1|1934643_1935405_-	lantibiotic immunity ABC transporter MutE/EpiE family permease subunit	NA	A0A2H4PQH2	Staphylococcus_phage	100.0	4.4e-131
WP_001096792.1|1935401_1936094_-	lantibiotic protection ABC transporter ATP-binding subunit	NA	A0A2H4PQG7	Staphylococcus_phage	99.6	6.8e-123
WP_000691542.1|1936116_1937490_-	S8 family serine peptidase	NA	A0A2H4PQH1	Staphylococcus_phage	99.6	1.2e-256
WP_000504439.1|1937499_1938018_-	flavoprotein	NA	A0A2H4PQG9	Staphylococcus_phage	100.0	2.0e-95
WP_000566596.1|1938033_1939278_-	lanthionine synthetase C family protein	NA	A0A2H4PQH9	Staphylococcus_phage	100.0	5.1e-238
WP_001092605.1|1939270_1942264_-	lantibiotic dehydratase	NA	A0A2H4PQG8	Staphylococcus_phage	97.3	0.0e+00
WP_000416756.1|1942328_1942472_-	gallidermin/nisin family lantibiotic	NA	A0A2H4PQH4	Staphylococcus_phage	80.9	5.3e-14
WP_000416759.1|1943208_1943352_-	gallidermin/nisin family lantibiotic	NA	NA	NA	NA	NA
WP_000782464.1|1943593_1944577_-	bi-component leukocidin LukED subunit D	NA	A0A2H4PQH7	Staphylococcus_phage	99.1	2.3e-185
WP_000473596.1|1944578_1945514_-	bi-component leukocidin LukED subunit E	NA	A0A2H4PQI5	Staphylococcus_phage	100.0	1.4e-174
WP_001790220.1|1946313_1946853_+	hypothetical protein	NA	Q4ZCB9	Staphylococcus_virus	76.8	2.0e-61
WP_000206350.1|1946865_1947654_+	DUF1828 domain-containing protein	NA	A0A2H4PQI0	Staphylococcus_phage	95.8	5.3e-140
>prophage 11
NC_017351	Staphylococcus aureus subsp. aureus 11819-97, complete sequence	2846546	2031024	2125021	2846546	holin,capsid,portal,terminase,tRNA,integrase,tail,protease,head	Staphylococcus_phage(85.53%)	111	2027523:2027544	2114158:2114179
2027523:2027544	attL	CCAACTTGCATTGTCTGTAGAA	NA	NA	NA	NA
WP_000170162.1|2031024_2031327_-|tRNA	Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC	tRNA	NA	NA	NA	NA
WP_000957020.1|2031693_2033232_+	sodium/proline symporter PutP	NA	NA	NA	NA	NA
WP_000831698.1|2033320_2034520_-	CamS family sex pheromone protein	NA	NA	NA	NA	NA
WP_000774565.1|2034532_2036536_-	NAD-dependent DNA ligase LigA	NA	A0A0K2QQN8	Ralstonia_phage	36.1	5.8e-114
WP_000992931.1|2036539_2038732_-	DNA helicase PcrA	NA	A7KV33	Bacillus_phage	42.1	5.0e-135
WP_000272064.1|2038728_2039421_-	heptaprenylglyceryl phosphate synthase	NA	NA	NA	NA	NA
WP_001165363.1|2039592_2039895_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000572878.1|2040003_2041299_-	adenylosuccinate lyase	NA	A0A1B3B081	Gordonia_phage	32.9	1.6e-16
WP_000827767.1|2042158_2043325_+|protease	cysteine protease staphopain A	protease	NA	NA	NA	NA
WP_000434933.1|2043355_2043682_+	staphostatin A	NA	NA	NA	NA	NA
WP_000669861.1|2043973_2044147_-	NETI motif-containing protein	NA	NA	NA	NA	NA
WP_000011542.1|2044127_2044730_-	DUF2179 domain-containing protein	NA	NA	NA	NA	NA
WP_000040866.1|2045000_2045822_-	ammonia-dependent NAD(+) synthetase	NA	G3MA24	Bacillus_virus	52.7	2.3e-69
WP_000284433.1|2045814_2047284_-	nicotinate phosphoribosyltransferase	NA	G3MA18	Bacillus_virus	45.1	3.5e-108
WP_000897635.1|2047467_2048544_+	nitric oxide synthase oxygenase	NA	NA	NA	NA	NA
WP_001177828.1|2048563_2049358_+	prephenate dehydratase	NA	NA	NA	NA	NA
WP_001802312.1|2049429_2049537_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000323161.1|2049547_2051110_-	SLC13 family permease	NA	NA	NA	NA	NA
WP_000275727.1|2051314_2052412_-	pectate lyase	NA	U5PWM6	Bacillus_phage	34.6	3.3e-47
WP_000149686.1|2052783_2053344_+	cysteine hydrolase	NA	G3MA16	Bacillus_virus	41.2	2.0e-32
WP_001140871.1|2053396_2054326_+	manganese-dependent inorganic pyrophosphatase	NA	NA	NA	NA	NA
WP_072384913.1|2054518_2054692_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001021224.1|2054742_2056122_+	aldehyde dehydrogenase	NA	NA	NA	NA	NA
WP_000181322.1|2056241_2057270_-	lactonase family protein	NA	NA	NA	NA	NA
WP_000205106.1|2057539_2057941_+	YolD-like family protein	NA	U3PG23	Staphylococcus_phage	42.9	6.0e-23
WP_000267034.1|2057997_2058171_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001188074.1|2058621_2059662_+	linear amide C-N hydrolase	NA	NA	NA	NA	NA
WP_000713071.1|2059718_2060561_-	DUF4097 family beta strand repeat protein	NA	NA	NA	NA	NA
WP_001033971.1|2060557_2061115_-	DUF1700 domain-containing protein	NA	NA	NA	NA	NA
WP_000966288.1|2061174_2061699_-	membrane protein	NA	NA	NA	NA	NA
WP_000182842.1|2061819_2062383_+	thioredoxin family protein	NA	NA	NA	NA	NA
WP_001221651.1|2062448_2063189_-	phenol-soluble modulin export ABC transporter permease subunit PmtD	NA	NA	NA	NA	NA
WP_000763045.1|2063188_2064061_-	phenol-soluble modulin export ABC transporter ATP-binding protein PmtC	NA	A0A2H4PQG7	Staphylococcus_phage	35.2	6.1e-28
WP_000645736.1|2064057_2064738_-	phenol-soluble modulin export ABC transporter permease subunit PmtB	NA	NA	NA	NA	NA
WP_000991304.1|2064738_2065635_-	phenol-soluble modulin export ABC transporter ATP-binding protein PmtA	NA	A0A2H4PQG7	Staphylococcus_phage	30.2	1.1e-16
WP_000691587.1|2065631_2066012_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_000681968.1|2066270_2066447_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000990056.1|2066689_2066788_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001068523.1|2066987_2068274_+	aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
WP_001823221.1|2068902_2070648_-	extracellular adherence protein Eap/Map	NA	NA	NA	NA	NA
WP_000669791.1|2071605_2071785_+	hypothetical protein	NA	A0A1W6JQ29	Staphylococcus_phage	98.3	1.4e-24
WP_001791826.1|2072095_2072356_+	hypothetical protein	NA	M9NS66	Staphylococcus_phage	100.0	2.3e-23
WP_000702263.1|2072408_2072759_-	complement inhibitor SCIN-A	NA	A0A1P8L6B0	Staphylococcus_phage	100.0	7.5e-54
WP_000920038.1|2074255_2074747_-	staphylokinase	NA	A0A1W6JQ12	Staphylococcus_phage	99.4	4.7e-86
WP_000861038.1|2074937_2075693_-	CHAP domain-containing protein	NA	D2JLG5	Staphylococcus_phage	100.0	3.4e-152
WP_000611512.1|2075704_2075959_-|holin	phage holin	holin	D2JLG4	Staphylococcus_phage	100.0	4.1e-41
WP_001791821.1|2076010_2076118_+	hypothetical protein	NA	NA	NA	NA	NA
WP_072353918.1|2076170_2076347_-|holin	putative holin-like toxin	holin	D2JLG3	Staphylococcus_phage	94.8	5.5e-21
WP_000340977.1|2076489_2076864_-	hypothetical protein	NA	G4KNR3	Staphylococcus_phage	100.0	3.3e-39
WP_001262620.1|2076919_2077207_-	hypothetical protein	NA	C5I682	Staphylococcus_phage	100.0	9.9e-44
WP_001000058.1|2077252_2077405_-	hypothetical protein	NA	A0A1W6JPL6	Staphylococcus_phage	100.0	7.6e-19
WP_000582128.1|2077397_2081180_-	hypothetical protein	NA	A0A1V0E5H3	Staphylococcus_phage	99.8	0.0e+00
WP_001154317.1|2081195_2082686_-|tail	phage tail family protein	tail	R9QST9	Staphylococcus_phage	100.0	3.1e-298
WP_001133535.1|2082685_2087368_-|tail	phage tail tape measure protein	tail	Q8SDK4	Staphylococcus_phage	90.8	0.0e+00
WP_000571956.1|2087423_2087546_-	hypothetical protein	NA	D2JLF6	Staphylococcus_phage	97.5	2.6e-14
WP_000442601.1|2087605_2088052_-	hypothetical protein	NA	D2JLF5	Staphylococcus_phage	100.0	5.4e-73
WP_000570652.1|2088116_2089070_-	Ig-like domain-containing protein	NA	A7TWD0	Staphylococcus_phage	100.0	6.2e-175
WP_000611449.1|2089070_2089451_-	hypothetical protein	NA	D2JLF3	Staphylococcus_phage	99.2	1.3e-67
WP_000501244.1|2089447_2089825_-	HK97 gp10 family phage protein	NA	D2JLF2	Staphylococcus_phage	100.0	1.1e-61
WP_000975314.1|2089824_2090160_-|head,tail	head-tail adaptor protein	head,tail	A7TWC7	Staphylococcus_phage	100.0	1.1e-59
WP_001177489.1|2090146_2090479_-|head,tail	phage head-tail connector protein	head,tail	D2JLF0	Staphylococcus_phage	99.1	8.2e-58
WP_001252099.1|2090487_2090646_-	hypothetical protein	NA	D2JLE9	Staphylococcus_phage	100.0	3.2e-20
WP_000849958.1|2090681_2091929_-|capsid	phage major capsid protein	capsid	Q8SDK8	Staphylococcus_phage	97.8	9.2e-211
WP_000032523.1|2092016_2092601_-|head,protease	HK97 family phage prohead protease	head,protease	D2JLE7	Staphylococcus_phage	99.5	2.9e-106
WP_000511062.1|2092593_2093844_-|portal	phage portal protein	portal	D2JLE6	Staphylococcus_phage	99.3	8.2e-236
WP_000365301.1|2093849_2094050_-	hypothetical protein	NA	D2JLE5	Staphylococcus_phage	98.5	2.2e-26
WP_000133309.1|2094063_2095758_-|terminase	phage terminase family protein	terminase	D2JLE4	Staphylococcus_phage	99.8	0.0e+00
WP_000919028.1|2095757_2096228_-|terminase	phage terminase small subunit P27 family	terminase	D2JLE3	Staphylococcus_phage	100.0	3.3e-81
WP_016169209.1|2096356_2096701_-	HNH endonuclease	NA	D2JLE2	Staphylococcus_phage	98.2	2.7e-64
WP_000406193.1|2096716_2097169_-	nucleoside triphosphate pyrophosphohydrolase family protein	NA	D2JLE1	Staphylococcus_phage	99.3	3.9e-79
WP_000282752.1|2097282_2097744_-	hypothetical protein	NA	D2JLE0	Staphylococcus_phage	100.0	1.1e-68
WP_001813913.1|2097766_2097967_-	DUF1514 family protein	NA	R9QT57	Staphylococcus_phage	98.5	1.5e-27
WP_001813911.1|2097966_2098116_-	transcriptional activator RinB	NA	A0A2I6PDY4	Staphylococcus_phage	95.9	1.1e-17
WP_001125015.1|2098118_2098319_-	hypothetical protein	NA	A0A2I6PF22	Staphylococcus_phage	100.0	1.8e-28
WP_000195782.1|2098293_2098482_-	DUF1381 domain-containing protein	NA	A0A2I6PDV0	Staphylococcus_phage	100.0	2.1e-26
WP_001282074.1|2098478_2098724_-	hypothetical protein	NA	A0A2I6PDW7	Staphylococcus_phage	100.0	5.0e-36
WP_001066447.1|2098760_2099297_-	dUTP diphosphatase	NA	A0A0H3U2Z8	Staphylococcus_phage	100.0	7.2e-96
WP_000714403.1|2099289_2099460_-	hypothetical protein	NA	A0A0H3U4U6	Staphylococcus_phage	100.0	8.2e-22
WP_000131370.1|2099715_2099958_-	hypothetical protein	NA	Q4ZDP7	Staphylococcus_virus	95.0	2.1e-39
WP_000101273.1|2099961_2100330_-	hypothetical protein	NA	I1W656	Staphylococcus_phage	98.4	1.2e-49
WP_000401964.1|2100342_2100747_-	RusA family crossover junction endodeoxyribonuclease	NA	A0A0E3XBN4	Staphylococcus_phage	100.0	1.4e-72
WP_000338528.1|2100755_2100974_-	hypothetical protein	NA	A0A1P8L6E4	Staphylococcus_phage	100.0	1.4e-37
WP_000148329.1|2100980_2101874_-	DnaD domain-containing protein	NA	A0A0E3TAG7	Staphylococcus_phage	100.0	1.1e-141
WP_000934769.1|2101903_2102374_-	single-stranded DNA-binding protein	NA	A0A0E3T9H6	Staphylococcus_phage	100.0	5.7e-81
WP_071621397.1|2102374_2102992_-	MBL fold metallo-hydrolase	NA	S4SWA4	Staphylococcus_phage	100.0	9.1e-87
WP_000138475.1|2103072_2103993_-	recombinase RecT	NA	A0A2I6PDH5	Staphylococcus_phage	100.0	2.3e-166
WP_050809366.1|2103994_2105950_-	AAA family ATPase	NA	R9QT82	Staphylococcus_phage	99.8	0.0e+00
WP_001205732.1|2105946_2106210_-	hypothetical protein	NA	A0A2I6PDG2	Staphylococcus_phage	100.0	7.7e-43
WP_000291489.1|2106218_2106479_-	DUF1108 family protein	NA	A0A1W6JQ03	Staphylococcus_phage	100.0	7.6e-43
WP_000066020.1|2106571_2106733_-	DUF1270 domain-containing protein	NA	A0A2I6PDF7	Staphylococcus_phage	100.0	1.9e-20
WP_001120935.1|2106729_2107050_-	DUF771 domain-containing protein	NA	Q4ZDR7	Staphylococcus_virus	100.0	1.5e-56
WP_000801108.1|2107108_2107336_+	hypothetical protein	NA	A7TWL9	Staphylococcus_phage	100.0	1.7e-38
WP_000389906.1|2107337_2107529_-	hypothetical protein	NA	A7TWL8	Staphylococcus_phage	100.0	2.8e-26
WP_000768245.1|2107578_2107935_+	DUF2513 domain-containing protein	NA	A0A1P8L6H1	Staphylococcus_phage	100.0	6.1e-59
WP_001148859.1|2107929_2108124_-	hypothetical protein	NA	A0A1P8L6G6	Staphylococcus_phage	100.0	4.3e-19
WP_001148565.1|2108139_2108928_-	phage antirepressor KilAC domain-containing protein	NA	R9QSV3	Staphylococcus_phage	100.0	1.2e-144
WP_000639922.1|2108943_2109186_-	DUF739 family protein	NA	R9QSU1	Staphylococcus_phage	100.0	9.5e-40
WP_001083967.1|2109349_2110066_+	helix-turn-helix domain-containing protein	NA	R9QTP6	Staphylococcus_phage	100.0	9.2e-131
WP_000804508.1|2110077_2110935_+	HIRAN domain-containing protein	NA	R9QTP0	Staphylococcus_phage	100.0	1.2e-161
WP_000705243.1|2110979_2111162_+	hypothetical protein	NA	R9QT81	Staphylococcus_phage	100.0	5.3e-27
WP_001013104.1|2111197_2111344_+	hypothetical protein	NA	A0A2I6PEK8	Staphylococcus_phage	89.6	1.1e-14
WP_000191459.1|2111340_2111955_-	hypothetical protein	NA	A7TW88	Staphylococcus_phage	100.0	7.9e-107
WP_000857176.1|2112062_2113100_+|integrase	site-specific integrase	integrase	A7TWL3	Staphylococcus_phage	100.0	3.4e-179
WP_000595401.1|2114481_2115498_-	bi-component leukocidin LukGH subunit G	NA	A0A2I6PER8	Staphylococcus_phage	29.3	2.3e-26
2114158:2114179	attR	TTCTACAGACAATGCAAGTTGG	NA	NA	NA	NA
WP_000791406.1|2115519_2116572_-	bi-component leukocidin LukGH subunit H	NA	A0A1X9IGW5	Staphylococcus_phage	34.6	1.1e-36
WP_000206636.1|2117007_2118231_+	ArgE/DapE family deacylase	NA	NA	NA	NA	NA
WP_000361985.1|2118953_2119397_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001045075.1|2120284_2121592_+	TrkH family potassium uptake protein	NA	NA	NA	NA	NA
WP_000240642.1|2122125_2123742_-	chaperonin GroEL	NA	A0A240F779	uncultured_virus	54.7	3.4e-157
WP_000917289.1|2123817_2124102_-	co-chaperone GroES	NA	A0A221S386	uncultured_virus	46.2	4.7e-14
WP_000197635.1|2124277_2125021_+|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
