bac_id	bac_def	spacer_id	hit_contig_id	hit_contig_def	identity	alignment_length	mismatch	gapopen	query_start	query_end	hit_start	hit_end	crispr_array_of_hit_genome	evalue	bitscore	coverage	spacer_sequence	hit_contig_region	hit_contig_sequence	hmm_mismatch
NC_017349	Staphylococcus aureus subsp. aureus LGA251, complete genome	1.2|865796|35|NC_017349|PILER-CR	NC_017349.1	Staphylococcus aureus subsp. aureus LGA251, complete genome	94.29	35	2	0	1	35	24704	24670	865716-865851|1255695-1255780|1642898-1642984|1926235-1926317|2161288-2161383|2273464-2273548|2336305-2336391|2513470-2513754|2744556-2744641	1e-08	50.7	1.0	GCTGGCGGAAAGGCAGCATACAATAATGTGCAAGT	24670-24704	ACTTGCACATTATTGTAAGCTGACTTTCCGCCAGC	2
NC_017349	Staphylococcus aureus subsp. aureus LGA251, complete genome	1.2|865796|35|NC_017349|PILER-CR	NC_017349.1	Staphylococcus aureus subsp. aureus LGA251, complete genome	94.29	35	2	0	1	35	73428	73394	865716-865851|1255695-1255780|1642898-1642984|1926235-1926317|2161288-2161383|2273464-2273548|2336305-2336391|2513470-2513754|2744556-2744641	1e-08	50.7	1.0	GCTGGCGGAAAGGCAGCATACAATAATGTGCAAGT	73394-73428	ACTTGCACATTATTGTAAGCTGACTTTCCGCCAGC	2
NC_017349	Staphylococcus aureus subsp. aureus LGA251, complete genome	1.2|865796|35|NC_017349|PILER-CR	NC_017349.1	Staphylococcus aureus subsp. aureus LGA251, complete genome	94.29	35	2	0	1	35	172798	172764	865716-865851|1255695-1255780|1642898-1642984|1926235-1926317|2161288-2161383|2273464-2273548|2336305-2336391|2513470-2513754|2744556-2744641	1e-08	50.7	1.0	GCTGGCGGAAAGGCAGCATACAATAATGTGCAAGT	172764-172798	ACTTGCACATTATTGTAAGCTGACTTTCCGCCAGC	2
NC_017349	Staphylococcus aureus subsp. aureus LGA251, complete genome	1.2|865796|35|NC_017349|PILER-CR	NC_017349.1	Staphylococcus aureus subsp. aureus LGA251, complete genome	94.29	35	2	0	1	35	172854	172820	865716-865851|1255695-1255780|1642898-1642984|1926235-1926317|2161288-2161383|2273464-2273548|2336305-2336391|2513470-2513754|2744556-2744641	1e-08	50.7	1.0	GCTGGCGGAAAGGCAGCATACAATAATGTGCAAGT	172820-172854	ACTTGCACATTATTGTAAGCTGACTTTCCGCCAGC	2
NC_017349	Staphylococcus aureus subsp. aureus LGA251, complete genome	1.2|865796|35|NC_017349|PILER-CR	NC_017349.1	Staphylococcus aureus subsp. aureus LGA251, complete genome	94.29	35	2	0	1	35	812506	812472	865716-865851|1255695-1255780|1642898-1642984|1926235-1926317|2161288-2161383|2273464-2273548|2336305-2336391|2513470-2513754|2744556-2744641	1e-08	50.7	1.0	GCTGGCGGAAAGGCAGCATACAATAATGTGCAAGT	812472-812506	ACTTGCACATTATTGTAAGCTGACTTTCCGCCAGC	2
NC_017349	Staphylococcus aureus subsp. aureus LGA251, complete genome	1.2|865796|35|NC_017349|PILER-CR	NC_017349.1	Staphylococcus aureus subsp. aureus LGA251, complete genome	94.29	35	2	0	1	35	848096	848062	865716-865851|1255695-1255780|1642898-1642984|1926235-1926317|2161288-2161383|2273464-2273548|2336305-2336391|2513470-2513754|2744556-2744641	1e-08	50.7	1.0	GCTGGCGGAAAGGCAGCATACAATAATGTGCAAGT	848062-848096	ACTTGCACATTATTGTAAGCTGACTTTCCGCCAGC	2
NC_017349	Staphylococcus aureus subsp. aureus LGA251, complete genome	1.2|865796|35|NC_017349|PILER-CR	NC_017349.1	Staphylococcus aureus subsp. aureus LGA251, complete genome	94.29	35	2	0	1	35	1657582	1657616	865716-865851|1255695-1255780|1642898-1642984|1926235-1926317|2161288-2161383|2273464-2273548|2336305-2336391|2513470-2513754|2744556-2744641	1e-08	50.7	1.0	GCTGGCGGAAAGGCAGCATACAATAATGTGCAAGT	1657582-1657616	GCTGGCGGAAAGTCAGCTTACAATAATGTGCAAGT	2
NC_017349	Staphylococcus aureus subsp. aureus LGA251, complete genome	1.2|865796|35|NC_017349|PILER-CR	NC_017349.1	Staphylococcus aureus subsp. aureus LGA251, complete genome	94.29	35	2	0	1	35	2440535	2440501	865716-865851|1255695-1255780|1642898-1642984|1926235-1926317|2161288-2161383|2273464-2273548|2336305-2336391|2513470-2513754|2744556-2744641	1e-08	50.7	1.0	GCTGGCGGAAAGGCAGCATACAATAATGTGCAAGT	2440501-2440535	ACTTGCACATTATTGTAAGCTGACTTTCCGCCAGC	2
NC_017349	Staphylococcus aureus subsp. aureus LGA251, complete genome	2.1|1255725|26|NC_017349|CRISPRCasFinder	NC_017349.1	Staphylococcus aureus subsp. aureus LGA251, complete genome	100.00	26	0	0	1	26	1657564	1657589	865716-865851|1255695-1255780|1642898-1642984|1926235-1926317|2161288-2161383|2273464-2273548|2336305-2336391|2513470-2513754|2744556-2744641	1e-06	42.8	1.0	CGGGGCCCCAACATAGAAGCTGGCGG	1657564-1657589	CGGGGCCCCAACATAGAAGCTGGCGG	0
NC_017349	Staphylococcus aureus subsp. aureus LGA251, complete genome	2.1|1255725|26|NC_017349|CRISPRCasFinder	NC_017349.1	Staphylococcus aureus subsp. aureus LGA251, complete genome	96.15	26	1	0	1	26	24722	24697	865716-865851|1255695-1255780|1642898-1642984|1926235-1926317|2161288-2161383|2273464-2273548|2336305-2336391|2513470-2513754|2744556-2744641	1e-05	39.6	1.0	CGGGGCCCCAACATAGAAGCTGGCGG	24697-24722	CCGCCAGCTACTATGTTGGGGCCCCG	1
NC_017349	Staphylococcus aureus subsp. aureus LGA251, complete genome	2.1|1255725|26|NC_017349|CRISPRCasFinder	NC_017349.1	Staphylococcus aureus subsp. aureus LGA251, complete genome	96.15	26	1	0	1	26	172816	172791	865716-865851|1255695-1255780|1642898-1642984|1926235-1926317|2161288-2161383|2273464-2273548|2336305-2336391|2513470-2513754|2744556-2744641	1e-05	39.6	1.0	CGGGGCCCCAACATAGAAGCTGGCGG	172791-172816	CCGCCAGCTTCTGTGTTGGGGCCCCG	1
NC_017349	Staphylococcus aureus subsp. aureus LGA251, complete genome	2.1|1255725|26|NC_017349|CRISPRCasFinder	NC_017349.1	Staphylococcus aureus subsp. aureus LGA251, complete genome	92.31	26	2	0	1	26	2411396	2411421	865716-865851|1255695-1255780|1642898-1642984|1926235-1926317|2161288-2161383|2273464-2273548|2336305-2336391|2513470-2513754|2744556-2744641	1e-04	36.5	1.0	CGGGGCCCCAACATAGAAGCTGGCGG	2411396-2411421	CGGGGCCCCAACACAGAAGCTGACGG	2
NC_017349	Staphylococcus aureus subsp. aureus LGA251, complete genome	3.1|1642927|29|NC_017349|CRISPRCasFinder	NC_017349.1	Staphylococcus aureus subsp. aureus LGA251, complete genome	100.00	29	0	0	1	29	395334	395306	865716-865851|1255695-1255780|1642898-1642984|1926235-1926317|2161288-2161383|2273464-2273548|2336305-2336391|2513470-2513754|2744556-2744641	5e-08	47.5	1.0	CGCATTGCCTGTAGAATTTCTTTTCGAAA	395306-395334	TTTCGAAAAGAAATTCTACAGGCAATGCG	0
NC_017349	Staphylococcus aureus subsp. aureus LGA251, complete genome	3.1|1642927|29|NC_017349|CRISPRCasFinder	NC_017349.1	Staphylococcus aureus subsp. aureus LGA251, complete genome	100.00	29	0	0	1	29	604973	604945	865716-865851|1255695-1255780|1642898-1642984|1926235-1926317|2161288-2161383|2273464-2273548|2336305-2336391|2513470-2513754|2744556-2744641	5e-08	47.5	1.0	CGCATTGCCTGTAGAATTTCTTTTCGAAA	604945-604973	TTTCGAAAAGAAATTCTACAGGCAATGCG	0
NC_017349	Staphylococcus aureus subsp. aureus LGA251, complete genome	3.1|1642927|29|NC_017349|CRISPRCasFinder	NC_017349.1	Staphylococcus aureus subsp. aureus LGA251, complete genome	100.00	29	0	0	1	29	632566	632538	865716-865851|1255695-1255780|1642898-1642984|1926235-1926317|2161288-2161383|2273464-2273548|2336305-2336391|2513470-2513754|2744556-2744641	5e-08	47.5	1.0	CGCATTGCCTGTAGAATTTCTTTTCGAAA	632538-632566	TTTCGAAAAGAAATTCTACAGGCAATGCG	0
NC_017349	Staphylococcus aureus subsp. aureus LGA251, complete genome	3.1|1642927|29|NC_017349|CRISPRCasFinder	NC_017349.1	Staphylococcus aureus subsp. aureus LGA251, complete genome	100.00	29	0	0	1	29	803606	803634	865716-865851|1255695-1255780|1642898-1642984|1926235-1926317|2161288-2161383|2273464-2273548|2336305-2336391|2513470-2513754|2744556-2744641	5e-08	47.5	1.0	CGCATTGCCTGTAGAATTTCTTTTCGAAA	803606-803634	CGCATTGCCTGTAGAATTTCTTTTCGAAA	0
NC_017349	Staphylococcus aureus subsp. aureus LGA251, complete genome	3.1|1642927|29|NC_017349|CRISPRCasFinder	NC_017349.1	Staphylococcus aureus subsp. aureus LGA251, complete genome	100.00	29	0	0	1	29	2712435	2712463	865716-865851|1255695-1255780|1642898-1642984|1926235-1926317|2161288-2161383|2273464-2273548|2336305-2336391|2513470-2513754|2744556-2744641	5e-08	47.5	1.0	CGCATTGCCTGTAGAATTTCTTTTCGAAA	2712435-2712463	CGCATTGCCTGTAGAATTTCTTTTCGAAA	0
NC_017349	Staphylococcus aureus subsp. aureus LGA251, complete genome	3.1|1642927|29|NC_017349|CRISPRCasFinder	NC_017349.1	Staphylococcus aureus subsp. aureus LGA251, complete genome	100.00	29	0	0	1	29	2744677	2744705	865716-865851|1255695-1255780|1642898-1642984|1926235-1926317|2161288-2161383|2273464-2273548|2336305-2336391|2513470-2513754|2744556-2744641	5e-08	47.5	1.0	CGCATTGCCTGTAGAATTTCTTTTCGAAA	2744677-2744705	CGCATTGCCTGTAGAATTTCTTTTCGAAA	0
NC_017349	Staphylococcus aureus subsp. aureus LGA251, complete genome	3.1|1642927|29|NC_017349|CRISPRCasFinder	NC_017349.1	Staphylococcus aureus subsp. aureus LGA251, complete genome	96.55	29	1	0	1	29	24735	24763	865716-865851|1255695-1255780|1642898-1642984|1926235-1926317|2161288-2161383|2273464-2273548|2336305-2336391|2513470-2513754|2744556-2744641	5e-07	44.4	1.0	CGCATTGCCTGTAGAATTTCTTTTCGAAA	24735-24763	CGCATTGCCTGTAGAATTTCATTTCGAAA	1
NC_017349	Staphylococcus aureus subsp. aureus LGA251, complete genome	3.1|1642927|29|NC_017349|CRISPRCasFinder	NC_017349.1	Staphylococcus aureus subsp. aureus LGA251, complete genome	96.55	29	1	0	1	29	865664	865636	865716-865851|1255695-1255780|1642898-1642984|1926235-1926317|2161288-2161383|2273464-2273548|2336305-2336391|2513470-2513754|2744556-2744641	5e-07	44.4	1.0	CGCATTGCCTGTAGAATTTCTTTTCGAAA	865636-865664	TTTCGAAAAGAAATTCTACAGGCAGTGCG	1
NC_017349	Staphylococcus aureus subsp. aureus LGA251, complete genome	3.1|1642927|29|NC_017349|CRISPRCasFinder	NC_017349.1	Staphylococcus aureus subsp. aureus LGA251, complete genome	96.55	29	1	0	1	29	1456865	1456893	865716-865851|1255695-1255780|1642898-1642984|1926235-1926317|2161288-2161383|2273464-2273548|2336305-2336391|2513470-2513754|2744556-2744641	5e-07	44.4	1.0	CGCATTGCCTGTAGAATTTCTTTTCGAAA	1456865-1456893	CGCATTGCCTGTAGAATTTCTTTCCGAAA	1
NC_017349	Staphylococcus aureus subsp. aureus LGA251, complete genome	6.1|2273494|25|NC_017349|CRISPRCasFinder	NC_017349.1	Staphylococcus aureus subsp. aureus LGA251, complete genome	100.00	25	0	0	1	25	2273550	2273574	865716-865851|1255695-1255780|1642898-1642984|1926235-1926317|2161288-2161383|2273464-2273548|2336305-2336391|2513470-2513754|2744556-2744641	4e-06	41.2	1.0	TGTCAGCTTCTGTGTTGGGGCCCCG	2273550-2273574	TGTCAGCTTCTGTGTTGGGGCCCCG	0
NC_017349	Staphylococcus aureus subsp. aureus LGA251, complete genome	6.1|2273494|25|NC_017349|CRISPRCasFinder	NC_017349.1	Staphylococcus aureus subsp. aureus LGA251, complete genome	92.00	25	2	0	1	25	1849882	1849906	865716-865851|1255695-1255780|1642898-1642984|1926235-1926317|2161288-2161383|2273464-2273548|2336305-2336391|2513470-2513754|2744556-2744641	4e-04	34.9	1.0	TGTCAGCTTCTGTGTTGGGGCCCCG	1849882-1849906	TGTCAGCTTTTATGTTGGGGCCCCG	2
NC_017349	Staphylococcus aureus subsp. aureus LGA251, complete genome	8.1|2513494|18|NC_017349|CRT	NC_017349.1	Staphylococcus aureus subsp. aureus LGA251, complete genome	100.00	18	0	0	1	18	2509847	2509864	865716-865851|1255695-1255780|1642898-1642984|1926235-1926317|2161288-2161383|2273464-2273548|2336305-2336391|2513470-2513754|2744556-2744641	0.009	30.1	1.0	TTTACCAGGTTCAGCTGG	2509847-2509864	TTTACCAGGTTCAGCTGG	0
NC_017349	Staphylococcus aureus subsp. aureus LGA251, complete genome	8.1|2513494|18|NC_017349|CRT	NC_017349.1	Staphylococcus aureus subsp. aureus LGA251, complete genome	94.44	18	1	0	1	18	1638249	1638266	865716-865851|1255695-1255780|1642898-1642984|1926235-1926317|2161288-2161383|2273464-2273548|2336305-2336391|2513470-2513754|2744556-2744641	0.085	26.9	1.0	TTTACCAGGTTCAGCTGG	1638249-1638266	TTTACCACGTTCAGCTGG	1
NC_017349	Staphylococcus aureus subsp. aureus LGA251, complete genome	8.4|2513629|18|NC_017349|CRT	NC_017349.1	Staphylococcus aureus subsp. aureus LGA251, complete genome	94.44	18	1	0	1	18	2509973	2509990	865716-865851|1255695-1255780|1642898-1642984|1926235-1926317|2161288-2161383|2273464-2273548|2336305-2336391|2513470-2513754|2744556-2744641	0.085	26.9	1.0	TGTTTCCGGCTCACTCGG	2509973-2509990	TGTTTCCGGCTCACTTGG	1
NC_017349	Staphylococcus aureus subsp. aureus LGA251, complete genome	8.4|2513629|18|NC_017349|CRT	NC_017349.1	Staphylococcus aureus subsp. aureus LGA251, complete genome	94.44	18	1	0	1	18	2510057	2510074	865716-865851|1255695-1255780|1642898-1642984|1926235-1926317|2161288-2161383|2273464-2273548|2336305-2336391|2513470-2513754|2744556-2744641	0.085	26.9	1.0	TGTTTCCGGCTCACTCGG	2510057-2510074	TGTTTCCGGCTCACTTGG	1
NC_017349	Staphylococcus aureus subsp. aureus LGA251, complete genome	8.4|2513629|18|NC_017349|CRT	NC_017349.1	Staphylococcus aureus subsp. aureus LGA251, complete genome	94.44	18	1	0	1	18	2510099	2510116	865716-865851|1255695-1255780|1642898-1642984|1926235-1926317|2161288-2161383|2273464-2273548|2336305-2336391|2513470-2513754|2744556-2744641	0.085	26.9	1.0	TGTTTCCGGCTCACTCGG	2510099-2510116	TGTTTCCGGCTCACTTGG	1
NC_017349	Staphylococcus aureus subsp. aureus LGA251, complete genome	8.4|2513629|18|NC_017349|CRT	NC_017349.1	Staphylococcus aureus subsp. aureus LGA251, complete genome	94.44	18	1	0	1	18	2510183	2510200	865716-865851|1255695-1255780|1642898-1642984|1926235-1926317|2161288-2161383|2273464-2273548|2336305-2336391|2513470-2513754|2744556-2744641	0.085	26.9	1.0	TGTTTCCGGCTCACTCGG	2510183-2510200	TGTTTCCGGCTCACTTGG	1
NC_017349	Staphylococcus aureus subsp. aureus LGA251, complete genome	8.6|2513713|18|NC_017349|CRT	NC_017349.1	Staphylococcus aureus subsp. aureus LGA251, complete genome	100.00	18	0	0	1	18	2509973	2509990	865716-865851|1255695-1255780|1642898-1642984|1926235-1926317|2161288-2161383|2273464-2273548|2336305-2336391|2513470-2513754|2744556-2744641	0.009	30.1	1.0	TGTTTCCGGCTCACTTGG	2509973-2509990	TGTTTCCGGCTCACTTGG	0
NC_017349	Staphylococcus aureus subsp. aureus LGA251, complete genome	8.6|2513713|18|NC_017349|CRT	NC_017349.1	Staphylococcus aureus subsp. aureus LGA251, complete genome	100.00	18	0	0	1	18	2510057	2510074	865716-865851|1255695-1255780|1642898-1642984|1926235-1926317|2161288-2161383|2273464-2273548|2336305-2336391|2513470-2513754|2744556-2744641	0.009	30.1	1.0	TGTTTCCGGCTCACTTGG	2510057-2510074	TGTTTCCGGCTCACTTGG	0
NC_017349	Staphylococcus aureus subsp. aureus LGA251, complete genome	8.6|2513713|18|NC_017349|CRT	NC_017349.1	Staphylococcus aureus subsp. aureus LGA251, complete genome	100.00	18	0	0	1	18	2510099	2510116	865716-865851|1255695-1255780|1642898-1642984|1926235-1926317|2161288-2161383|2273464-2273548|2336305-2336391|2513470-2513754|2744556-2744641	0.009	30.1	1.0	TGTTTCCGGCTCACTTGG	2510099-2510116	TGTTTCCGGCTCACTTGG	0
NC_017349	Staphylococcus aureus subsp. aureus LGA251, complete genome	8.6|2513713|18|NC_017349|CRT	NC_017349.1	Staphylococcus aureus subsp. aureus LGA251, complete genome	100.00	18	0	0	1	18	2510183	2510200	865716-865851|1255695-1255780|1642898-1642984|1926235-1926317|2161288-2161383|2273464-2273548|2336305-2336391|2513470-2513754|2744556-2744641	0.009	30.1	1.0	TGTTTCCGGCTCACTTGG	2510183-2510200	TGTTTCCGGCTCACTTGG	0
NC_017349	Staphylococcus aureus subsp. aureus LGA251, complete genome	9.1|2744586|26|NC_017349|CRISPRCasFinder	NC_017349.1	Staphylococcus aureus subsp. aureus LGA251, complete genome	100.00	26	0	0	1	26	1657589	1657564	865716-865851|1255695-1255780|1642898-1642984|1926235-1926317|2161288-2161383|2273464-2273548|2336305-2336391|2513470-2513754|2744556-2744641	1e-06	42.8	1.0	CCGCCAGCTTCTATGTTGGGGCCCCG	1657564-1657589	CGGGGCCCCAACATAGAAGCTGGCGG	0
NC_017349	Staphylococcus aureus subsp. aureus LGA251, complete genome	9.1|2744586|26|NC_017349|CRISPRCasFinder	NC_017349.1	Staphylococcus aureus subsp. aureus LGA251, complete genome	96.15	26	1	0	1	26	24697	24722	865716-865851|1255695-1255780|1642898-1642984|1926235-1926317|2161288-2161383|2273464-2273548|2336305-2336391|2513470-2513754|2744556-2744641	1e-05	39.6	1.0	CCGCCAGCTTCTATGTTGGGGCCCCG	24697-24722	CCGCCAGCTACTATGTTGGGGCCCCG	1
NC_017349	Staphylococcus aureus subsp. aureus LGA251, complete genome	9.1|2744586|26|NC_017349|CRISPRCasFinder	NC_017349.1	Staphylococcus aureus subsp. aureus LGA251, complete genome	96.15	26	1	0	1	26	172791	172816	865716-865851|1255695-1255780|1642898-1642984|1926235-1926317|2161288-2161383|2273464-2273548|2336305-2336391|2513470-2513754|2744556-2744641	1e-05	39.6	1.0	CCGCCAGCTTCTATGTTGGGGCCCCG	172791-172816	CCGCCAGCTTCTGTGTTGGGGCCCCG	1
NC_017349	Staphylococcus aureus subsp. aureus LGA251, complete genome	9.1|2744586|26|NC_017349|CRISPRCasFinder	NC_017349.1	Staphylococcus aureus subsp. aureus LGA251, complete genome	92.31	26	2	0	1	26	2411421	2411396	865716-865851|1255695-1255780|1642898-1642984|1926235-1926317|2161288-2161383|2273464-2273548|2336305-2336391|2513470-2513754|2744556-2744641	1e-04	36.5	1.0	CCGCCAGCTTCTATGTTGGGGCCCCG	2411396-2411421	CGGGGCCCCAACACAGAAGCTGACGG	2
