assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000237265.1_ASM23726v1	NC_017349	Staphylococcus aureus subsp. aureus LGA251, complete genome	1	865716-865851	1	PILER-CR	no		WYL,DinG,csa3,cas3,DEDDh	Orphan	TGGCGGGGCCCCAACATAGAG	21	1	8	865796-865830|865796-865830|865796-865830|865796-865830|865796-865830|865796-865830|865796-865830|865796-865830	NC_017349.1_24704-24670|NC_017349.1_73428-73394|NC_017349.1_172798-172764|NC_017349.1_172854-172820|NC_017349.1_812506-812472|NC_017349.1_848096-848062|NC_017349.1_1657582-1657616|NC_017349.1_2440535-2440501	NA	2	2	Orphan	WYL,DinG,csa3,cas3,DEDDh	NA|114aa|up_9|NC_017349.1_859548_859890_+,NA|78aa|up_8|NC_017349.1_859903_860137_+,NA|71aa|up_5|NC_017349.1_861417_861630_+,NA|120aa|up_3|NC_017349.1_862270_862630_-,NA|130aa|up_2|NC_017349.1_862746_863136_-,NA|404aa|up_1|NC_017349.1_863137_864349_-,NA|67aa|down_8|NC_017349.1_874499_874700_+	NA|114aa|up_9|NC_017349.1_859548_859890_+	NA	NA|78aa|up_8|NC_017349.1_859903_860137_+	NA	NA|174aa|up_7|NC_017349.1_860147_860669_+	COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]	NA|176aa|up_6|NC_017349.1_860758_861286_+	COG5577, COG5577, Spore coat protein [Cell envelope biogenesis, outer membrane]	NA|71aa|up_5|NC_017349.1_861417_861630_+	NA	NA|190aa|up_4|NC_017349.1_861626_862196_+	COG3728, XtmA, Phage terminase, small subunit [DNA replication, recombination, and repair]	NA|120aa|up_3|NC_017349.1_862270_862630_-	NA	NA|130aa|up_2|NC_017349.1_862746_863136_-	NA	NA|404aa|up_1|NC_017349.1_863137_864349_-	NA	NA|131aa|up_0|NC_017349.1_864375_864768_+	pfam07252, DUF1433, Protein of unknown function (DUF1433)	NA|65aa|down_0|NC_017349.1_866138_866333_+	COG3237, COG3237, Uncharacterized protein conserved in bacteria [Function unknown]	NA|284aa|down_1|NC_017349.1_866566_867418_-	COG2035, COG2035, Predicted membrane protein [Function unknown]	NA|254aa|down_2|NC_017349.1_867746_868508_+	COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]	NA|436aa|down_3|NC_017349.1_868605_869913_+	COG0719, SufB, Cysteine desulfurase activator SufB [Posttranslational modification, protein turnover, chaperones]	NA|417aa|down_4|NC_017349.1_870018_871269_+	TIGR01979, Probable_cysteine_desulfurase, cysteine desulfurases, SufSfamily	NA|155aa|down_5|NC_017349.1_871258_871723_+	TIGR01994, Iron-sulfur_cluster_assembly_scaffold_protein_IscU, SUF system FeS assembly protein, NifU family	NA|466aa|down_6|NC_017349.1_871873_873271_+	TIGR01980, UPF0051_protein_slr0074, FeS assembly protein SufB	NA|350aa|down_7|NC_017349.1_873338_874388_-	cd01189, INT_ICEBs1_C_like, C-terminal catalytic domain of integrases from bacterial phages and conjugate transposons	NA|67aa|down_8|NC_017349.1_874499_874700_+	NA	NA|302aa|down_9|NC_017349.1_874636_875542_-	PRK04203, rpl1P, 50S ribosomal protein L1P; Reviewed
GCF_000237265.1_ASM23726v1	NC_017349	Staphylococcus aureus subsp. aureus LGA251, complete genome	2	1255695-1255780	1	CRISPRCasFinder	no	cas3	WYL,DinG,csa3,cas3,DEDDh	Unclear	AAAGTCAGCTTACAATAATGTGCAAGTTGG	30	1	4	1255725-1255750|1255725-1255750|1255725-1255750|1255725-1255750	NC_017349.1_1657564-1657589|NC_017349.1_24722-24697|NC_017349.1_172816-172791|NC_017349.1_2411396-2411421	NA	1	1	Unclear	WYL,DinG,csa3,cas3,DEDDh	NA,NA|71aa|down_5|NC_017349.1_1262926_1263139_+	NA|78aa|up_9|NC_017349.1_1245037_1245271_+	PRK00982, acpP, acyl carrier protein; Provisional	NA|244aa|up_8|NC_017349.1_1245386_1246118_+	PRK00102, rnc, ribonuclease III; Reviewed	NA|1189aa|up_7|NC_017349.1_1246264_1249831_+	COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]	NA|417aa|up_6|NC_017349.1_1249830_1251081_+	PRK10416, PRK10416, signal recognition particle-docking protein FtsY; Provisional	NA|111aa|up_5|NC_017349.1_1251067_1251400_+	PRK00118, PRK00118, putative DNA-binding protein; Validated	NA|456aa|up_4|NC_017349.1_1251425_1252793_+	PRK10867, PRK10867, signal recognition particle protein; Provisional	NA|92aa|up_3|NC_017349.1_1253227_1253503_+	COG0228, RpsP, Ribosomal protein S16 [Translation, ribosomal structure and biogenesis]	NA|168aa|up_2|NC_017349.1_1253690_1254194_+	PRK00122, rimM, 16S rRNA-processing protein RimM; Provisional	NA|246aa|up_1|NC_017349.1_1254193_1254931_+	PRK00026, trmD, tRNA (guanine-N(1)-)-methyltransferase; Reviewed	NA|117aa|up_0|NC_017349.1_1255033_1255384_+	PRK05338, rplS, 50S ribosomal protein L19; Provisional	NA|869aa|down_0|NC_017349.1_1255853_1258460_-	COG4485, COG4485, Predicted membrane protein [Function unknown]	NA|295aa|down_1|NC_017349.1_1258860_1259745_+	PRK09563, rbgA, GTPase YlqF; Reviewed	NA|256aa|down_2|NC_017349.1_1259728_1260496_+	cd07182, RNase_HII_bacteria_HII_like, Bacterial Ribonuclease HII-like	NA|389aa|down_3|NC_017349.1_1260604_1261771_+	PRK00696, sucC, ADP-forming succinate--CoA ligase subunit beta	NA|303aa|down_4|NC_017349.1_1261792_1262701_+	PRK05678, PRK05678, succinyl-CoA synthetase subunit alpha; Validated	NA|71aa|down_5|NC_017349.1_1262926_1263139_+	NA	NA|415aa|down_6|NC_017349.1_1263166_1264411_+	pfam02388, FemAB, FemAB family	NA|291aa|down_7|NC_017349.1_1264582_1265455_+	COG0758, Smf, Predicted Rossmann fold nucleotide-binding protein involved in DNA uptake [DNA replication, recombination, and repair / Intracellular trafficking and secretion]	NA|692aa|down_8|NC_017349.1_1265628_1267704_+	PRK05582, PRK05582, type I DNA topoisomerase	NA|436aa|down_9|NC_017349.1_1267859_1269167_+	PRK05335, PRK05335, tRNA (uracil-5-)-methyltransferase Gid; Reviewed
GCF_000237265.1_ASM23726v1	NC_017349	Staphylococcus aureus subsp. aureus LGA251, complete genome	3	1642898-1642984	2	CRISPRCasFinder	no		WYL,DinG,csa3,cas3,DEDDh	Orphan	TTCTCTGTGTTGGGGCCCACACCCCAACT	29	1	9	1642927-1642955|1642927-1642955|1642927-1642955|1642927-1642955|1642927-1642955|1642927-1642955|1642927-1642955|1642927-1642955|1642927-1642955	NC_017349.1_395334-395306|NC_017349.1_604973-604945|NC_017349.1_632566-632538|NC_017349.1_803606-803634|NC_017349.1_2712435-2712463|NC_017349.1_2744677-2744705|NC_017349.1_24735-24763|NC_017349.1_865664-865636|NC_017349.1_1456865-1456893	NA	1	1	Orphan	WYL,DinG,csa3,cas3,DEDDh	NA,NA	NA|228aa|up_9|NC_017349.1_1632012_1632696_-	COG1030, NfeD, Membrane-bound serine protease (ClpP class) [Posttranslational modification, protein turnover, chaperones]	NA|59aa|up_8|NC_017349.1_1632939_1633116_-	PRK00270, rpsU, 30S ribosomal protein S21; Reviewed	NA|449aa|up_7|NC_017349.1_1633408_1634755_-	COG0621, MiaB, 2-methylthioadenine synthetase [Translation, ribosomal structure and biogenesis]	NA|251aa|up_6|NC_017349.1_1634761_1635514_-	COG1385, COG1385, Uncharacterized protein conserved in bacteria [Function unknown]	NA|313aa|up_5|NC_017349.1_1635515_1636454_-	pfam06325, PrmA, Ribosomal protein L11 methyltransferase (PrmA)	NA|380aa|up_4|NC_017349.1_1636457_1637597_-	PRK14280, PRK14280, molecular chaperone DnaJ	NA|611aa|up_3|NC_017349.1_1637732_1639565_-	PRK00290, dnaK, molecular chaperone DnaK; Provisional	NA|209aa|up_2|NC_017349.1_1639633_1640260_-	PRK14140, PRK14140, heat shock protein GrpE; Provisional	NA|326aa|up_1|NC_017349.1_1640291_1641269_-	TIGR00331, Heat-inducible_transcription_repressor_HrcA, heat shock gene repressor HrcA	NA|375aa|up_0|NC_017349.1_1641368_1642493_-	PRK08599, PRK08599, oxygen-independent coproporphyrinogen III oxidase	NA|608aa|down_0|NC_017349.1_1643171_1644995_-	PRK05433, PRK05433, GTP-binding protein LepA; Provisional	NA|84aa|down_1|NC_017349.1_1645340_1645592_+	PRK00239, rpsT, 30S ribosomal protein S20; Reviewed	NA|325aa|down_2|NC_017349.1_1645636_1646611_-	PRK05574, holA, DNA polymerase III subunit delta; Reviewed	NA|734aa|down_3|NC_017349.1_1646667_1648869_-	COG2333, ComEC, Predicted hydrolase (metallo-beta-lactamase superfamily) [General function prediction only]	NA|154aa|down_4|NC_017349.1_1648873_1649335_-	TIGR02571, putative_dCMP_deaminase, ComE operon protein 2	NA|229aa|down_5|NC_017349.1_1649426_1650113_-	COG1555, ComEA, DNA uptake protein and related DNA-binding proteins [DNA replication, recombination, and repair]	NA|239aa|down_6|NC_017349.1_1650152_1650869_-	pfam13649, Methyltransf_25, Methyltransferase domain	NA|118aa|down_7|NC_017349.1_1650871_1651225_-	COG0799, COG0799, Uncharacterized homolog of plant Iojap protein [Function unknown]	NA|195aa|down_8|NC_017349.1_1651225_1651810_-	COG1713, COG1713, Predicted HD superfamily hydrolase involved in NAD metabolism [Coenzyme metabolism]	NA|190aa|down_9|NC_017349.1_1651799_1652369_-	TIGR00482, Probable_nicotinate-nucleotide_adenylyltransferase, nicotinate (nicotinamide) nucleotide adenylyltransferase
GCF_000237265.1_ASM23726v1	NC_017349	Staphylococcus aureus subsp. aureus LGA251, complete genome	4	1926235-1926317	3	CRISPRCasFinder	no		WYL,DinG,csa3,cas3,DEDDh	Orphan	CAACATAGTGAAATTGGATCCTCA	24	0	0	NA	NA	NA	1	1	Orphan	WYL,DinG,csa3,cas3,DEDDh	NA|33aa|up_8|NC_017349.1_1917699_1917798_-,NA|132aa|up_0|NC_017349.1_1925488_1925884_-,NA|51aa|down_0|NC_017349.1_1926632_1926785_-	NA|399aa|up_9|NC_017349.1_1916206_1917403_-	COG0420, SbcD, DNA repair exonuclease [DNA replication, recombination, and repair]	NA|33aa|up_8|NC_017349.1_1917699_1917798_-	NA	NA|115aa|up_7|NC_017349.1_1918180_1918525_-	PRK13676, PRK13676, YlbF/YmcA family competence regulator	NA|375aa|up_6|NC_017349.1_1918593_1919718_-	COG4399, COG4399, Uncharacterized protein conserved in bacteria [Function unknown]	NA|155aa|up_5|NC_017349.1_1919896_1920361_-	COG1476, COG1476, Predicted transcriptional regulators [Transcription]	NA|208aa|up_4|NC_017349.1_1920716_1921340_-	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|371aa|up_3|NC_017349.1_1921361_1922474_-	COG4585, COG4585, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|274aa|up_2|NC_017349.1_1922636_1923458_+	COG0564, RluA, Pseudouridylate synthases, 23S RNA-specific [Translation, ribosomal structure and biogenesis]	NA|462aa|up_1|NC_017349.1_1923907_1925293_-	PRK00485, fumC, fumarate hydratase; Reviewed	NA|132aa|up_0|NC_017349.1_1925488_1925884_-	NA	NA|51aa|down_0|NC_017349.1_1926632_1926785_-	NA	NA|200aa|down_1|NC_017349.1_1926809_1927409_-	COG0363, NagB, 6-phosphogluconolactonase/Glucosamine-6-phosphate isomerase/deaminase [Carbohydrate transport and metabolism]	NA|157aa|down_2|NC_017349.1_1927567_1928038_-	COG0219, CspR, Predicted rRNA methylase (SpoU class) [Translation, ribosomal structure and biogenesis]	NA|376aa|down_3|NC_017349.1_1928042_1929170_-	TIGR00276, iron-sulfur_cluster-binding_protein, epoxyqueuosine reductase	NA|241aa|down_4|NC_017349.1_1929320_1930043_-	COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]	NA|486aa|down_5|NC_017349.1_1930035_1931493_-	COG0765, HisM, ABC-type amino acid transport system, permease component [Amino acid transport and metabolism]	NA|354aa|down_6|NC_017349.1_1931750_1932812_-	COG3641, PfoR, Predicted membrane protein, putative toxin regulator [General function prediction only]	NA|149aa|down_7|NC_017349.1_1941681_1942128_-	COG0735, Fur, Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]	NA|317aa|down_8|NC_017349.1_1942224_1943175_-	cd12155, PGDH_1, Phosphoglycerate Dehydrogenase, 2-hydroxyacid dehydrogenase family	NA|152aa|down_9|NC_017349.1_1943180_1943636_-	COG1225, Bcp, Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
GCF_000237265.1_ASM23726v1	NC_017349	Staphylococcus aureus subsp. aureus LGA251, complete genome	5	2161288-2161383	4	CRISPRCasFinder	no	csa3	WYL,DinG,csa3,cas3,DEDDh	Type I-A	CAACTTTAGTTGTTAGGGGCTCTTATGCAG	30	0	0	NA	NA	NA	1	1	Orphan	WYL,DinG,csa3,cas3,DEDDh	NA|77aa|up_5|NC_017349.1_2156159_2156390_-,NA|364aa|up_0|NC_017349.1_2160179_2161271_+,NA|31aa|down_0|NC_017349.1_2161479_2161572_+	NA|237aa|up_9|NC_017349.1_2151767_2152478_+	PRK05819, deoD, DeoD-type purine-nucleoside phosphorylase	NA|148aa|up_8|NC_017349.1_2152598_2153042_-	COG0783, Dps, DNA-binding ferritin-like protein (oxidative damage protectant) [Inorganic ion transport and metabolism]	NA|138aa|up_7|NC_017349.1_2153241_2153655_-	COG3011, COG3011, Predicted thiol-disulfide oxidoreductase [General function    prediction only]	NA|458aa|up_6|NC_017349.1_2154112_2155486_-	pfam01878, EVE, EVE domain	NA|77aa|up_5|NC_017349.1_2156159_2156390_-	NA	NA|313aa|up_4|NC_017349.1_2156420_2157359_-	COG1482, ManA, Phosphomannose isomerase [Carbohydrate transport and metabolism]	NA|222aa|up_3|NC_017349.1_2157794_2158460_-	cd05243, SDR_a5, atypical (a) SDRs, subgroup 5	csa3|107aa|up_2|NC_017349.1_2158611_2158932_+	cd00090, HTH_ARSR, Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors	NA|327aa|up_1|NC_017349.1_2158933_2159914_+	COG1230, CzcD, Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism]	NA|364aa|up_0|NC_017349.1_2160179_2161271_+	NA	NA|31aa|down_0|NC_017349.1_2161479_2161572_+	NA	NA|286aa|down_1|NC_017349.1_2161719_2162577_-	COG0561, Cof, Predicted hydrolases of the HAD superfamily [General function prediction only]	NA|261aa|down_2|NC_017349.1_2162644_2163427_-	COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]	NA|602aa|down_3|NC_017349.1_2163658_2165464_-	PRK00331, PRK00331, isomerizing glutamine--fructose-6-phosphate transaminase	NA|513aa|down_4|NC_017349.1_2166144_2167683_+	COG2213, MtlA, Phosphotransferase system, mannitol-specific IIBC component [Carbohydrate transport and metabolism]	NA|711aa|down_5|NC_017349.1_2167717_2169850_+	COG3711, BglG, Transcriptional antiterminator [Transcription]	NA|145aa|down_6|NC_017349.1_2169861_2170296_+	COG4668, MtlA, Mannitol/fructose-specific phosphotransferase system, IIA domain [Carbohydrate transport and metabolism]	NA|369aa|down_7|NC_017349.1_2170295_2171402_+	PRK02318, PRK02318, mannitol-1-phosphate 5-dehydrogenase; Provisional	NA|2484aa|down_8|NC_017349.1_2171720_2179172_-	TIGR04263, cell_wall_surface_anchor_family_protein, SasC/Mrp/FmtB intercellular aggregation domain	NA|452aa|down_9|NC_017349.1_2179450_2180806_-	PRK14316, glmM, phosphoglucosamine mutase; Provisional
GCF_000237265.1_ASM23726v1	NC_017349	Staphylococcus aureus subsp. aureus LGA251, complete genome	6	2273464-2273548	5	CRISPRCasFinder	no		WYL,DinG,csa3,cas3,DEDDh	Orphan	CCAACTTGCACATTATTGTAAGCTGACTTT	30	1	2	2273494-2273518|2273494-2273518	NC_017349.1_2273550-2273574|NC_017349.1_1849882-1849906	NA	1	1	Orphan	WYL,DinG,csa3,cas3,DEDDh	NA|55aa|up_9|NC_017349.1_2263971_2264136_+,NA|106aa|up_8|NC_017349.1_2264381_2264699_+,NA|84aa|up_5|NC_017349.1_2269823_2270075_+,NA|57aa|up_0|NC_017349.1_2273215_2273386_+,NA	NA|55aa|up_9|NC_017349.1_2263971_2264136_+	NA	NA|106aa|up_8|NC_017349.1_2264381_2264699_+	NA	NA|1056aa|up_7|NC_017349.1_2264885_2268053_-	COG0841, AcrB, Cation/multidrug efflux pump [Defense mechanisms]	NA|422aa|up_6|NC_017349.1_2268169_2269435_-	COG2348, COG2348, Peptidoglycan interpeptide bridge formation enzyme [Cell wall/membrane/envelope biogenesis]	NA|84aa|up_5|NC_017349.1_2269823_2270075_+	NA	NA|255aa|up_4|NC_017349.1_2270066_2270831_-	pfam13468, Glyoxalase_3, Glyoxalase-like domain	NA|147aa|up_3|NC_017349.1_2270993_2271434_+	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|404aa|up_2|NC_017349.1_2271426_2272638_+	cd17489, MFS_YfcJ_like, Escherichia coli YfcJ, YhhS, and similar transporters of the Major Facilitator Superfamily	NA|117aa|up_1|NC_017349.1_2272739_2273090_-	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family	NA|57aa|up_0|NC_017349.1_2273215_2273386_+	NA	NA|341aa|down_0|NC_017349.1_2273784_2274807_-	TIGR02666, Cyclic_pyranopterin_monophosphate_synthase, molybdenum cofactor biosynthesis protein A, bacterial	NA|200aa|down_1|NC_017349.1_2274826_2275426_-	PRK00317, mobA, molybdopterin-guanine dinucleotide biosynthesis protein MobA; Reviewed	NA|78aa|down_2|NC_017349.1_2275432_2275666_-	cd00754, Ubl_MoaD, ubiquitin-like (Ubl) domain found in molybdenum cofactor biosynthesis protein D (MoaD) and similar proteins	NA|149aa|down_3|NC_017349.1_2275671_2276118_-	COG0314, MoaE, Molybdopterin converting factor, large subunit [Coenzyme metabolism]	NA|162aa|down_4|NC_017349.1_2276131_2276617_-	COG1763, MobB, Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]	NA|420aa|down_5|NC_017349.1_2276613_2277873_-	cd00887, MoeA, MoeA family	NA|165aa|down_6|NC_017349.1_2277935_2278430_+	PRK09364, moaC, cyclic pyranopterin monophosphate synthase MoaC	NA|169aa|down_7|NC_017349.1_2278431_2278938_-	COG0521, MoaB, Molybdopterin biosynthesis enzymes [Coenzyme metabolism]	NA|335aa|down_8|NC_017349.1_2278968_2279973_-	PRK07688, PRK07688, thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated	NA|202aa|down_9|NC_017349.1_2280141_2280747_-	COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
GCF_000237265.1_ASM23726v1	NC_017349	Staphylococcus aureus subsp. aureus LGA251, complete genome	7	2336305-2336391	6	CRISPRCasFinder	no		WYL,DinG,csa3,cas3,DEDDh	Orphan	ATTAGAGCCTCTTATGCAGTTGCTCAG	27	0	0	NA	NA	NA	1	1	Orphan	WYL,DinG,csa3,cas3,DEDDh	NA|191aa|up_5|NC_017349.1_2328902_2329475_-,NA|62aa|down_7|NC_017349.1_2342869_2343055_-	NA|535aa|up_9|NC_017349.1_2323934_2325539_-	TIGR02005, PTS-IIBC-alpha, PTS system, alpha-glucoside-specific IIBC component	NA|255aa|up_8|NC_017349.1_2325868_2326633_+	COG1737, RpiR, Transcriptional regulators [Transcription]	NA|169aa|up_7|NC_017349.1_2326690_2327197_-	COG3832, COG3832, Uncharacterized conserved protein [Function unknown]	NA|432aa|up_6|NC_017349.1_2327382_2328678_-	COG1757, NhaC, Na+/H+ antiporter [Energy production and conversion]	NA|191aa|up_5|NC_017349.1_2328902_2329475_-	NA	NA|294aa|up_4|NC_017349.1_2329961_2330843_-	PRK07985, PRK07985, SDR family oxidoreductase	NA|374aa|up_3|NC_017349.1_2330953_2332075_-	cd05669, M20_Acy1_YxeP-like, M20 Peptidase aminoacyclase-1 YxeP-like proteins, including YxeP, YtnL, YjiB and HipO2	NA|413aa|up_2|NC_017349.1_2332352_2333591_-	PRK09356, PRK09356, imidazolonepropionase; Validated	NA|554aa|up_1|NC_017349.1_2333590_2335252_-	PRK05414, PRK05414, urocanate hydratase; Provisional	NA|295aa|up_0|NC_017349.1_2335411_2336296_+	COG0583, LysR, Transcriptional regulator [Transcription]	NA|140aa|down_0|NC_017349.1_2336477_2336897_+	PRK04101, PRK04101, metallothiol transferase FosB	NA|312aa|down_1|NC_017349.1_2337152_2338088_-	PRK13774, PRK13774, formimidoylglutamase; Provisional	NA|419aa|down_2|NC_017349.1_2338377_2339634_+	COG1266, COG1266, Predicted metal-dependent membrane protease [General function prediction only]	NA|229aa|down_3|NC_017349.1_2339699_2340386_-	PRK13978, PRK13978, ribose 5-phosphate isomerase A	NA|218aa|down_4|NC_017349.1_2340556_2341210_+	COG2258, COG2258, Uncharacterized protein conserved in bacteria [Function unknown]	NA|340aa|down_5|NC_017349.1_2341445_2342465_-	cd09019, galactose_mutarotase_like, galactose mutarotase_like	NA|109aa|down_6|NC_017349.1_2342494_2342821_-	COG1742, COG1742, Uncharacterized conserved protein [Function unknown]	NA|62aa|down_7|NC_017349.1_2342869_2343055_-	NA	NA|411aa|down_8|NC_017349.1_2343038_2344271_-	COG1668, NatB, ABC-type Na+ efflux pump, permease component [Energy production and conversion / Inorganic ion transport and metabolism]	NA|300aa|down_9|NC_017349.1_2344263_2345163_-	COG4152, COG4152, ABC-type uncharacterized transport system, ATPase component [General function prediction only]
GCF_000237265.1_ASM23726v1	NC_017349	Staphylococcus aureus subsp. aureus LGA251, complete genome	8	2513470-2513754	1	CRT	no		WYL,DinG,csa3,cas3,DEDDh	Orphan	TACNTCTGGTGTNGGTGGNGTTGG	24	3	10	2513494-2513511|2513494-2513511|2513629-2513646|2513629-2513646|2513629-2513646|2513629-2513646|2513713-2513730|2513713-2513730|2513713-2513730|2513713-2513730	NC_017349.1_2509847-2509864|NC_017349.1_1638249-1638266|NC_017349.1_2509973-2509990|NC_017349.1_2510057-2510074|NC_017349.1_2510099-2510116|NC_017349.1_2510183-2510200|NC_017349.1_2509973-2509990|NC_017349.1_2510057-2510074|NC_017349.1_2510099-2510116|NC_017349.1_2510183-2510200	NA	6	6	Orphan	WYL,DinG,csa3,cas3,DEDDh	NA|89aa|up_3|NC_017349.1_2507702_2507969_+,NA|103aa|up_2|NC_017349.1_2508112_2508421_+,NA|33aa|down_9|NC_017349.1_2528301_2528400_-	NA|262aa|up_9|NC_017349.1_2499375_2500161_-	pfam04507, DUF576, Csa1 family	NA|258aa|up_8|NC_017349.1_2500272_2501046_-	pfam04507, DUF576, Csa1 family	NA|258aa|up_7|NC_017349.1_2501157_2501931_-	pfam04507, DUF576, Csa1 family	NA|954aa|up_6|NC_017349.1_2502237_2505099_-	COG1061, SSL2, DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]	NA|131aa|up_5|NC_017349.1_2505100_2505493_-	cd03425, MutT_pyrophosphohydrolase, The MutT pyrophosphohydrolase is a prototypical Nudix hydrolase that catalyzes the hydrolysis of nucleoside and deoxynucleoside triphosphates (NTPs and dNTPs) by substitution at a beta-phosphorus to yield a nucleotide monophosphate (NMP) and inorganic pyrophosphate (PPi)	NA|546aa|up_4|NC_017349.1_2505781_2507419_+	cd05799, PGM2, This CD includes PGM2 (phosphoglucomutase 2) and PGM2L1 (phosphoglucomutase 2-like 1)	NA|89aa|up_3|NC_017349.1_2507702_2507969_+	NA	NA|103aa|up_2|NC_017349.1_2508112_2508421_+	NA	NA|289aa|up_1|NC_017349.1_2508545_2509412_-	COG1210, GalU, UDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane]	NA|989aa|up_0|NC_017349.1_2509591_2512558_-	pfam10425, SdrG_C_C, C-terminus of bacterial fibrinogen-binding adhesin	NA|453aa|down_0|NC_017349.1_2516829_2518188_-	TIGR00791, Gluconate_permease, gluconate transporter	NA|518aa|down_1|NC_017349.1_2518304_2519858_-	TIGR01314, gntK_FGGY, gluconate kinase, FGGY type	NA|227aa|down_2|NC_017349.1_2519881_2520562_-	COG1802, GntR, Transcriptional regulators [Transcription]	NA|255aa|down_3|NC_017349.1_2520715_2521480_-	cd01106, HTH_TipAL-Mta, Helix-Turn-Helix DNA binding domain of the transcription regulators TipAL, Mta, and SkgA	NA|231aa|down_4|NC_017349.1_2521644_2522337_-	COG2357, COG2357, PpGpp synthetase catalytic domain [General function prediction only]	NA|139aa|down_5|NC_017349.1_2522567_2522984_-	COG4876, COG4876, Uncharacterized protein conserved in bacteria [Function unknown]	NA|608aa|down_6|NC_017349.1_2523122_2524946_-	COG1289, COG1289, Predicted membrane protein [Function unknown]	NA|426aa|down_7|NC_017349.1_2525857_2527135_-	cd17319, MFS_ExuT_GudP_like, Hexuronate transporter, Glucarate transporter, and similar transporters of the Major Facilitator Superfamily	NA|204aa|down_8|NC_017349.1_2527681_2528293_+	COG0586, DedA, Uncharacterized membrane-associated protein [Function unknown]	NA|33aa|down_9|NC_017349.1_2528301_2528400_-	NA
GCF_000237265.1_ASM23726v1	NC_017349	Staphylococcus aureus subsp. aureus LGA251, complete genome	9	2744556-2744641	7	CRISPRCasFinder	no		WYL,DinG,csa3,cas3,DEDDh	Orphan	CCAACTTGCACATTATTGTAAGCTGACTTT	30	1	4	2744586-2744611|2744586-2744611|2744586-2744611|2744586-2744611	NC_017349.1_1657589-1657564|NC_017349.1_24697-24722|NC_017349.1_172791-172816|NC_017349.1_2411421-2411396	NA	1	1	Orphan	WYL,DinG,csa3,cas3,DEDDh	NA|64aa|up_4|NC_017349.1_2741775_2741967_+,NA	NA|339aa|up_9|NC_017349.1_2735886_2736903_+	COG3376, HoxN, High-affinity nickel permease [Inorganic ion transport and metabolism]	NA|271aa|up_8|NC_017349.1_2737145_2737958_+	COG2162, NhoA, Arylamine N-acetyltransferase [Secondary metabolites biosynthesis, transport, and catabolism]	NA|171aa|up_7|NC_017349.1_2738253_2738766_-	COG3247, HdeD, Uncharacterized conserved protein [Function unknown]	NA|253aa|up_6|NC_017349.1_2739055_2739814_+	COG1136, SalX, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]	NA|627aa|up_5|NC_017349.1_2739803_2741684_+	pfam02687, FtsX, FtsX-like permease family	NA|64aa|up_4|NC_017349.1_2741775_2741967_+	NA	NA|67aa|up_3|NC_017349.1_2742359_2742560_+	COG1278, CspC, Cold shock proteins [Transcription]	NA|190aa|up_2|NC_017349.1_2742686_2743256_-	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|132aa|up_1|NC_017349.1_2743515_2743911_-	pfam11345, DUF3147, Protein of unknown function (DUF3147)	NA|118aa|up_0|NC_017349.1_2743978_2744332_-	pfam11345, DUF3147, Protein of unknown function (DUF3147)	NA|280aa|down_0|NC_017349.1_2744941_2745781_-	TIGR04285, parB-like_partition_protein, nucleoid occlusion protein	NA|240aa|down_1|NC_017349.1_2745823_2746543_-	PRK00107, gidB, 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG	NA|626aa|down_2|NC_017349.1_2746542_2748420_-	PRK05192, PRK05192, tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG	NA|460aa|down_3|NC_017349.1_2748486_2749866_-	PRK05291, trmE, tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE	NA|118aa|down_4|NC_017349.1_2750008_2750362_-	PRK00499, rnpA, ribonuclease P; Reviewed	NA|46aa|down_5|NC_017349.1_2750482_2750620_-	pfam00468, Ribosomal_L34, Ribosomal protein L34	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA
