assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000237125.1_ASM23712v1	NC_016928	Staphylococcus aureus subsp. aureus M013, complete genome	1	769643-769728	1	CRISPRCasFinder	no		WYL,cas3,DEDDh,DinG,csa3	Orphan	CAATGCGAGTTGGGGTGGGGCCCCAACA	28	1	1	769671-769700	NC_016928.1_810741-810712	NA	1	1	Orphan	WYL,cas3,DEDDh,DinG,csa3	NA|69aa|up_9|NC_016928.1_756486_756693_+,NA|34aa|down_1|NC_016928.1_771171_771273_+,NA|83aa|down_3|NC_016928.1_772917_773166_-,NA|89aa|down_6|NC_016928.1_774966_775233_+	NA|69aa|up_9|NC_016928.1_756486_756693_+	NA	NA|237aa|up_8|NC_016928.1_756789_757500_+	COG2049, DUR1, Allophanate hydrolase subunit 1 [Amino acid transport and metabolism]	NA|335aa|up_7|NC_016928.1_757483_758488_+	COG1984, DUR1, Allophanate hydrolase subunit 2 [Amino acid transport and metabolism]	NA|647aa|up_6|NC_016928.1_758961_760902_+	COG1368, MdoB, Phosphoglycerol transferase and related proteins, alkaline phosphatase superfamily [Cell envelope biogenesis, outer membrane]	NA|628aa|up_5|NC_016928.1_761172_763056_+	COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]	NA|594aa|up_4|NC_016928.1_763067_764849_+	TIGR01389, recQ, ATP-dependent DNA helicase RecQ	NA|326aa|up_3|NC_016928.1_765070_766048_+	COG1125, OpuBA, ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]	NA|505aa|up_2|NC_016928.1_766040_767555_+	cd13610, PBP2_ChoS, Substrate-binding domain ChoS of an osmoregulated ABC-type transporter and related proteins; type 2 periplasmic-binding protein fold	NA|353aa|up_1|NC_016928.1_767794_768853_+	PRK03158, PRK03158, histidinol-phosphate aminotransferase; Provisional	NA|181aa|up_0|NC_016928.1_769011_769554_+	COG4502, COG4502, 5'(3')-deoxyribonucleotidase [Nucleotide transport and metabolism]	NA|306aa|down_0|NC_016928.1_770161_771079_-	COG1597, LCB5, Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase [Lipid metabolism / General function prediction only]	NA|34aa|down_1|NC_016928.1_771171_771273_+	NA	NA|502aa|down_2|NC_016928.1_771350_772856_-	COG3104, PTR2, Dipeptide/tripeptide permease [Amino acid transport and metabolism]	NA|83aa|down_3|NC_016928.1_772917_773166_-	NA	NA|167aa|down_4|NC_016928.1_773195_773696_-	COG0780, COG0780, Enzyme related to GTP cyclohydrolase I [General function prediction only]	NA|289aa|down_5|NC_016928.1_773715_774582_-	COG0697, RhaT, Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]	NA|89aa|down_6|NC_016928.1_774966_775233_+	NA	NA|133aa|down_7|NC_016928.1_775382_775781_+	COG1780, NrdI, Protein involved in ribonucleotide reduction [Nucleotide transport and metabolism]	NA|702aa|down_8|NC_016928.1_775743_777849_+	PRK07632, PRK07632, ribonucleotide-diphosphate reductase subunit alpha; Validated	NA|324aa|down_9|NC_016928.1_777966_778938_+	TIGR04171, ribonucleotide-diphosphate_reductase_subunit_beta, ribonucleoside-diphosphate reductase, class 1b, beta subunit
GCF_000237125.1_ASM23712v1	NC_016928	Staphylococcus aureus subsp. aureus M013, complete genome	2	946685-946842	1,2	PILER-CR,CRISPRCasFinder	no		WYL,cas3,DEDDh,DinG,csa3	Orphan	CCAACTTGCATTGCTTGTAGAATCTCTTTTCGAAATTCT,TCTTTTCGAAATTCTCTGTGTTGGGGCCC	39,29	1	11	946792-946810|946792-946810|946792-946810|946792-946810|946792-946810|946792-946810|946792-946810|946792-946810|946792-946810|946792-946810|946792-946810	NC_016928.1_825166-825184|NC_016928.1_1286737-1286755|NC_016928.1_1286795-1286813|NC_016928.1_1980142-1980160|NC_016928.1_2320346-2320328|NC_016928.1_183919-183937|NC_016928.1_617021-617003|NC_016928.1_926520-926502|NC_016928.1_1145436-1145418|NC_016928.1_1361370-1361388|NC_016928.1_1700143-1700161	NA:NA	2,1	2	Orphan	WYL,cas3,DEDDh,DinG,csa3	NA,NA	NA|192aa|up_9|NC_016928.1_933124_933700_+	COG0398, COG0398, Uncharacterized conserved protein [Function unknown]	NA|175aa|up_8|NC_016928.1_933704_934229_+	TIGR02227, Inactive_signal_peptidase_IA	NA|192aa|up_7|NC_016928.1_934244_934820_+	TIGR02227, Inactive_signal_peptidase_IA	NA|1159aa|up_6|NC_016928.1_934979_938456_+	TIGR02773, ATP-dependent_helicase/deoxyribonuclease_subunit_B, helicase-exonuclease AddAB, AddB subunit	NA|1218aa|up_5|NC_016928.1_938456_942110_+	TIGR02785, ATP-dependent_helicase/nuclease_subunit_A, helicase-exonuclease AddAB, AddA subunit, Firmicutes type	NA|301aa|up_4|NC_016928.1_942275_943178_+	COG0179, MhpD, 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) [Secondary metabolites biosynthesis, transport, and catabolism]	NA|130aa|up_3|NC_016928.1_943504_943894_+	PRK13673, PRK13673, hypothetical protein; Provisional	NA|439aa|up_2|NC_016928.1_944065_945382_-	PRK13512, PRK13512, coenzyme A disulfide reductase; Provisional	NA|275aa|up_1|NC_016928.1_945433_946258_-	cd07516, HAD_Pase, phosphatase, similar to Escherichia coli Cof and Thermotoga maritima TM0651; belongs to the haloacid dehalogenase-like superfamily	NA|103aa|up_0|NC_016928.1_946371_946680_+	COG2151, PaaD, Predicted metal-sulfur cluster biosynthetic enzyme [General function prediction only]	NA|605aa|down_0|NC_016928.1_947333_949148_+	COG1835, COG1835, Predicted acyltransferases [Lipid metabolism]	NA|870aa|down_1|NC_016928.1_949350_951960_+	TIGR03346, chaperone_ClpB, ATP-dependent chaperone ClpB	NA|290aa|down_2|NC_016928.1_952018_952888_-	COG0583, LysR, Transcriptional regulator [Transcription]	NA|81aa|down_3|NC_016928.1_952997_953240_+	COG0119, LeuA, Isopropylmalate/homocitrate/citramalate synthases [Amino acid transport and metabolism]	NA|214aa|down_4|NC_016928.1_954124_954766_+	COG0009, SUA5, Putative translation factor (SUA5) [Translation, ribosomal structure and biogenesis]	NA|172aa|down_5|NC_016928.1_955860_956376_+	COG1881, COG1881, Phospholipid-binding protein [General function prediction only]	NA|145aa|down_6|NC_016928.1_956686_957121_+	pfam03642, MAP, MAP domain	NA|62aa|down_7|NC_016928.1_957377_957563_-	pfam11151, DUF2929, Protein of unknown function (DUF2929)	NA|314aa|down_8|NC_016928.1_957857_958799_+	PRK09352, PRK09352, beta-ketoacyl-ACP synthase 3	NA|415aa|down_9|NC_016928.1_958810_960055_+	TIGR03150, fabF, beta-ketoacyl-acyl-carrier-protein synthase II
GCF_000237125.1_ASM23712v1	NC_016928	Staphylococcus aureus subsp. aureus M013, complete genome	3	1065200-1065292	3	CRISPRCasFinder	no		WYL,cas3,DEDDh,DinG,csa3	Orphan	AAAAGCCCCTAACAACTAAAGGTTGTAAGG	30	0	0	NA	NA	NA	1	1	Orphan	WYL,cas3,DEDDh,DinG,csa3	NA|66aa|up_2|NC_016928.1_1061627_1061825_-,NA|45aa|down_0|NC_016928.1_1065301_1065436_-,NA|432aa|down_1|NC_016928.1_1065587_1066883_+,NA|68aa|down_2|NC_016928.1_1066903_1067107_-	NA|224aa|up_9|NC_016928.1_1052995_1053667_+	PRK03619, PRK03619, phosphoribosylformylglycinamidine synthase subunit PurQ	NA|730aa|up_8|NC_016928.1_1053659_1055849_+	PRK01213, PRK01213, phosphoribosylformylglycinamidine synthase subunit PurL	NA|495aa|up_7|NC_016928.1_1055827_1057312_+	PRK07272, PRK07272, amidophosphoribosyltransferase; Provisional	NA|343aa|up_6|NC_016928.1_1057304_1058333_+	PRK05385, PRK05385, phosphoribosylaminoimidazole synthetase; Provisional	NA|189aa|up_5|NC_016928.1_1058335_1058902_+	COG0299, PurN, Folate-dependent phosphoribosylglycinamide formyltransferase PurN [Nucleotide transport and metabolism]	NA|493aa|up_4|NC_016928.1_1058916_1060395_+	PRK00881, purH, bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase; Provisional	NA|416aa|up_3|NC_016928.1_1060416_1061664_+	PRK13790, PRK13790, phosphoribosylamine--glycine ligase; Provisional	NA|66aa|up_2|NC_016928.1_1061627_1061825_-	NA	NA|269aa|up_1|NC_016928.1_1061929_1062736_-	COG0619, CbiQ, ABC-type cobalt transport system, permease component CbiQ and related transporters [Inorganic ion transport and metabolism]	NA|192aa|up_0|NC_016928.1_1064142_1064718_-	COG4721, COG4721, ABC-type cobalt transport system, predicted permease component [Inorganic ion transport and metabolism]	NA|45aa|down_0|NC_016928.1_1065301_1065436_-	NA	NA|432aa|down_1|NC_016928.1_1065587_1066883_+	NA	NA|68aa|down_2|NC_016928.1_1066903_1067107_-	NA	NA|391aa|down_3|NC_016928.1_1067307_1068480_+	COG1092, COG1092, Predicted SAM-dependent methyltransferases [General function prediction only]	NA|181aa|down_4|NC_016928.1_1068533_1069076_+	pfam05128, DUF697, Domain of unknown function (DUF697)	NA|89aa|down_5|NC_016928.1_1069229_1069496_+	PRK13780, PRK13780, phosphocarrier protein HPr; Provisional	NA|573aa|down_6|NC_016928.1_1069498_1071217_+	COG1080, PtsA, Phosphoenolpyruvate-protein kinase (PTS system EI component in bacteria) [Carbohydrate transport and metabolism]	NA|78aa|down_7|NC_016928.1_1071453_1071687_-	cd02976, NrdH, NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile	NA|454aa|down_8|NC_016928.1_1071883_1073245_+	pfam01654, Cyt_bd_oxida_I, Cytochrome bd terminal oxidase subunit I	NA|340aa|down_9|NC_016928.1_1073241_1074261_+	COG1294, AppB, Cytochrome bd-type quinol oxidase, subunit 2 [Energy production and conversion]
GCF_000237125.1_ASM23712v1	NC_016928	Staphylococcus aureus subsp. aureus M013, complete genome	4	1149386-1149628	2	PILER-CR	no		WYL,cas3,DEDDh,DinG,csa3	Orphan	GGCGGGGCCCCAACATAG	18	4	45	1149404-1149440|1149404-1149440|1149404-1149440|1149404-1149440|1149404-1149440|1149404-1149440|1149404-1149440|1149404-1149440|1149404-1149440|1149404-1149440|1149404-1149440|1149404-1149440|1149404-1149440|1149404-1149440|1149404-1149440|1149404-1149440|1149404-1149440|1149459-1149496|1149459-1149496|1149459-1149496|1149459-1149496|1149459-1149496|1149459-1149496|1149459-1149496|1149459-1149496|1149459-1149496|1149459-1149496|1149515-1149552|1149515-1149552|1149515-1149552|1149515-1149552|1149515-1149552|1149515-1149552|1149515-1149552|1149515-1149552|1149515-1149552|1149571-1149610|1149571-1149610|1149571-1149610|1149571-1149610|1149571-1149610|1149571-1149610|1149571-1149610|1149571-1149610|1149571-1149610	NC_016928.1_2286005-2285969|NC_016928.1_369262-369298|NC_016928.1_369317-369353|NC_016928.1_861540-861504|NC_016928.1_881577-881613|NC_016928.1_1786150-1786186|NC_016928.1_1788367-1788403|NC_016928.1_2320347-2320383|NC_016928.1_779232-779268|NC_016928.1_1145381-1145417|NC_016928.1_1286794-1286758|NC_016928.1_1286852-1286816|NC_016928.1_1680333-1680369|NC_016928.1_1786094-1786130|NC_016928.1_1989492-1989456|NC_016928.1_2034147-2034183|NC_016928.1_2745467-2745431|NC_016928.1_825165-825128|NC_016928.1_1665089-1665052|NC_016928.1_1980141-1980104|NC_016928.1_2782479-2782442|NC_016928.1_816000-815963|NC_016928.1_881634-881671|NC_016928.1_1145551-1145588|NC_016928.1_1432175-1432138|NC_016928.1_1680390-1680427|NC_016928.1_1978685-1978648|NC_016928.1_779120-779157|NC_016928.1_183918-183881|NC_016928.1_617022-617059|NC_016928.1_617078-617115|NC_016928.1_779176-779213|NC_016928.1_825051-825014|NC_016928.1_1149687-1149724|NC_016928.1_2286120-2286083|NC_016928.1_2320402-2320439|NC_016928.1_779120-779159|NC_016928.1_183918-183879|NC_016928.1_617022-617061|NC_016928.1_617078-617117|NC_016928.1_779176-779215|NC_016928.1_825051-825012|NC_016928.1_1149687-1149726|NC_016928.1_2286120-2286081|NC_016928.1_2320402-2320441	NA	4	4	Orphan	WYL,cas3,DEDDh,DinG,csa3	NA|169aa|up_9|NC_016928.1_1143274_1143781_+,NA|109aa|up_6|NC_016928.1_1145277_1145604_-,NA|62aa|up_5|NC_016928.1_1145756_1145942_-,NA|73aa|up_4|NC_016928.1_1146148_1146367_-,NA|78aa|up_3|NC_016928.1_1146560_1146794_-,NA|49aa|up_1|NC_016928.1_1148902_1149049_+,NA|75aa|up_0|NC_016928.1_1149005_1149230_+,NA|76aa|down_6|NC_016928.1_1156699_1156927_+	NA|169aa|up_9|NC_016928.1_1143274_1143781_+	NA	NA|166aa|up_8|NC_016928.1_1144039_1144537_+	pfam12199, efb-c, Extracellular fibrinogen binding protein C terminal	NA|117aa|up_7|NC_016928.1_1144690_1145041_+	pfam11546, CompInhib_SCIN, Staphylococcal complement inhibitor SCIN	NA|109aa|up_6|NC_016928.1_1145277_1145604_-	NA	NA|62aa|up_5|NC_016928.1_1145756_1145942_-	NA	NA|73aa|up_4|NC_016928.1_1146148_1146367_-	NA	NA|78aa|up_3|NC_016928.1_1146560_1146794_-	NA	NA|320aa|up_2|NC_016928.1_1147270_1148230_-	TIGR01002, synergohymenotropic_toxin, beta-channel forming cytolysin	NA|49aa|up_1|NC_016928.1_1148902_1149049_+	NA	NA|75aa|up_0|NC_016928.1_1149005_1149230_+	NA	NA|239aa|down_0|NC_016928.1_1149901_1150618_-	PRK13350, PRK13350, superantigen-like protein; Reviewed	NA|242aa|down_1|NC_016928.1_1150725_1151451_-	PRK13349, PRK13349, superantigen-like protein; Reviewed	NA|242aa|down_2|NC_016928.1_1151545_1152271_-	PRK13043, PRK13043, superantigen-like protein; Reviewed	NA|334aa|down_3|NC_016928.1_1152708_1153710_+	PRK04284, PRK04284, ornithine carbamoyltransferase; Provisional	NA|311aa|down_4|NC_016928.1_1153732_1154665_+	PRK12353, PRK12353, putative amino acid kinase; Reviewed	NA|497aa|down_5|NC_016928.1_1154901_1156392_+	COG1288, COG1288, Predicted membrane protein [Function unknown]	NA|76aa|down_6|NC_016928.1_1156699_1156927_+	NA	NA|316aa|down_7|NC_016928.1_1157232_1158180_-	cd09325, TDT_C4-dicarb_trans, C4-dicarboxylate transporters of the Tellurite-resistance/Dicarboxylate Transporter (TDT) family	NA|63aa|down_8|NC_016928.1_1158429_1158618_+	COG2826, Tra8, Transposase and inactivated derivatives, IS30 family [DNA replication, recombination, and repair]	NA|45aa|down_9|NC_016928.1_1159530_1159665_+	pfam05480, Staph_haemo, Staphylococcus haemolytic protein
GCF_000237125.1_ASM23712v1	NC_016928	Staphylococcus aureus subsp. aureus M013, complete genome	5	1224033-1224125	4	CRISPRCasFinder	no	cas3	WYL,cas3,DEDDh,DinG,csa3	Unclear	TAAGAAACAGTAATCAATAAATTGATAACT	30	0	0	NA	NA	NA	1	1	Unclear	WYL,cas3,DEDDh,DinG,csa3	NA,NA	NA|215aa|up_9|NC_016928.1_1213909_1214554_+	COG0036, Rpe, Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]	NA|214aa|up_8|NC_016928.1_1214560_1215202_+	COG1564, THI80, Thiamine pyrophosphokinase [Coenzyme metabolism]	NA|63aa|up_7|NC_016928.1_1215583_1215772_-	PRK00359, rpmB, 50S ribosomal protein L28; Reviewed	NA|125aa|up_6|NC_016928.1_1216214_1216589_+	COG1302, COG1302, Uncharacterized protein conserved in bacteria [Function unknown]	NA|549aa|up_5|NC_016928.1_1216603_1218250_+	COG1461, COG1461, Predicted kinase related to dihydroxyacetone kinase [General function prediction only]	cas3|687aa|up_4|NC_016928.1_1218438_1220499_+	PRK10917, PRK10917, ATP-dependent DNA helicase RecG; Provisional	NA|191aa|up_3|NC_016928.1_1220700_1221273_+	PRK04424, PRK04424, transcription factor FapR	NA|329aa|up_2|NC_016928.1_1221277_1222264_+	PRK05331, PRK05331, phosphate acyltransferase PlsX	NA|286aa|up_1|NC_016928.1_1222256_1223114_+	COG0331, FabD, (acyl-carrier-protein) S-malonyltransferase [Lipid metabolism]	NA|245aa|up_0|NC_016928.1_1223174_1223909_+	PRK05557, fabG, 3-ketoacyl-(acyl-carrier-protein) reductase; Validated	NA|78aa|down_0|NC_016928.1_1224214_1224448_+	PRK00982, acpP, acyl carrier protein; Provisional	NA|244aa|down_1|NC_016928.1_1224563_1225295_+	PRK00102, rnc, ribonuclease III; Reviewed	NA|1189aa|down_2|NC_016928.1_1225441_1229008_+	COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]	NA|417aa|down_3|NC_016928.1_1229007_1230258_+	PRK10416, PRK10416, signal recognition particle-docking protein FtsY; Provisional	NA|111aa|down_4|NC_016928.1_1230244_1230577_+	PRK00118, PRK00118, putative DNA-binding protein; Validated	NA|456aa|down_5|NC_016928.1_1230602_1231970_+	PRK10867, PRK10867, signal recognition particle protein; Provisional	NA|92aa|down_6|NC_016928.1_1232315_1232591_+	COG0228, RpsP, Ribosomal protein S16 [Translation, ribosomal structure and biogenesis]	NA|246aa|down_7|NC_016928.1_1233280_1234018_+	PRK00026, trmD, tRNA (guanine-N(1)-)-methyltransferase; Reviewed	NA|117aa|down_8|NC_016928.1_1234120_1234471_+	PRK05338, rplS, 50S ribosomal protein L19; Provisional	NA|869aa|down_9|NC_016928.1_1234714_1237321_-	COG4485, COG4485, Predicted membrane protein [Function unknown]
GCF_000237125.1_ASM23712v1	NC_016928	Staphylococcus aureus subsp. aureus M013, complete genome	6	1432081-1432160	5	CRISPRCasFinder	no		WYL,cas3,DEDDh,DinG,csa3	Orphan	CCAACTTGCACATTATTGTAAGCTG	25	0	0	NA	NA	NA	1	1	Orphan	WYL,cas3,DEDDh,DinG,csa3	NA|68aa|up_4|NC_016928.1_1423562_1423766_-,NA	NA|210aa|up_9|NC_016928.1_1417251_1417881_+	COG4915, XpaC, 5-bromo-4-chloroindolyl phosphate hydrolysis protein [General function prediction only]	NA|379aa|up_8|NC_016928.1_1417912_1419049_+	pfam05816, TelA, Toxic anion resistance protein (TelA)	NA|448aa|up_7|NC_016928.1_1419122_1420466_-	COG1114, BrnQ, Branched-chain amino acid permeases [Amino acid transport and metabolism]	NA|629aa|up_6|NC_016928.1_1420690_1422577_-	COG4548, NorD, Nitric oxide reductase activation protein [Inorganic ion transport and metabolism]	NA|264aa|up_5|NC_016928.1_1422590_1423382_-	COG0714, COG0714, MoxR-like ATPases [General function prediction only]	NA|68aa|up_4|NC_016928.1_1423562_1423766_-	NA	NA|270aa|up_3|NC_016928.1_1423794_1424604_-	cd08346, PcpA_N_like, N-terminal domain of Sphingobium chlorophenolicum 2,6-dichloro-p-hydroquinone 1,2-dioxygenase (PcpA), and similar proteins	NA|423aa|up_2|NC_016928.1_1425183_1426452_-	PRK05704, PRK05704, 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase	NA|933aa|up_1|NC_016928.1_1426465_1429264_-	PRK09404, sucA, 2-oxoglutarate dehydrogenase E1 component; Reviewed	NA|220aa|up_0|NC_016928.1_1430903_1431563_-	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|205aa|down_0|NC_016928.1_1432704_1433319_-	cd03392, PAP2_like_2, PAP2_like_2 proteins	NA|357aa|down_1|NC_016928.1_1433335_1434406_-	PRK12446, PRK12446, undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed	NA|170aa|down_2|NC_016928.1_1434417_1434927_-	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|497aa|down_3|NC_016928.1_1435326_1436817_-	COG0793, Prc, Periplasmic protease [Cell envelope biogenesis, outer membrane]	NA|74aa|down_4|NC_016928.1_1437008_1437230_-	COG4479, COG4479, Uncharacterized protein conserved in bacteria [Function unknown]	NA|167aa|down_5|NC_016928.1_1437229_1437730_-	COG2190, NagE, Phosphotransferase system IIA components [Carbohydrate transport and metabolism]	NA|143aa|down_6|NC_016928.1_1437741_1438170_-	PRK00222, PRK00222, peptide-methionine (R)-S-oxide reductase MsrB	NA|178aa|down_7|NC_016928.1_1438162_1438696_-	PRK13014, PRK13014, methionine sulfoxide reductase A; Provisional	NA|280aa|down_8|NC_016928.1_1438785_1439625_-	TIGR00762, DegV, EDD domain protein, DegV family	NA|160aa|down_9|NC_016928.1_1439639_1440119_-	pfam00186, DHFR_1, Dihydrofolate reductase
GCF_000237125.1_ASM23712v1	NC_016928	Staphylococcus aureus subsp. aureus M013, complete genome	7	1978689-1978770	6	CRISPRCasFinder	no	DEDDh	WYL,cas3,DEDDh,DinG,csa3	Unclear	TGTTGGGGCCCCGCCAACCTGCATT	25	0	0	NA	NA	NA	1	1	Orphan	WYL,cas3,DEDDh,DinG,csa3	NA|92aa|up_6|NC_016928.1_1972886_1973162_+,NA|129aa|up_1|NC_016928.1_1977144_1977531_-,NA|19aa|down_1|NC_016928.1_1980065_1980122_+,NA|138aa|down_2|NC_016928.1_1980453_1980867_-,NA|37aa|down_3|NC_016928.1_1980895_1981006_-,NA|31aa|down_7|NC_016928.1_1984011_1984104_-	NA|419aa|up_9|NC_016928.1_1970809_1972066_-	pfam02073, Peptidase_M29, Thermophilic metalloprotease (M29)	NA|67aa|up_8|NC_016928.1_1972068_1972269_-	COG4840, COG4840, Uncharacterized protein conserved in bacteria [Function unknown]	NA|155aa|up_7|NC_016928.1_1972415_1972880_+	cd16343, LMWPTP, Low molecular weight protein tyrosine phosphatase	NA|92aa|up_6|NC_016928.1_1972886_1973162_+	NA	NA|406aa|up_5|NC_016928.1_1973439_1974657_+	COG1295, Rbn, Ribonuclease BN family enzyme [Replication, recombination, and repair]	NA|210aa|up_4|NC_016928.1_1974769_1975399_-	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|348aa|up_3|NC_016928.1_1975388_1976432_-	COG4585, COG4585, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|234aa|up_2|NC_016928.1_1976428_1977130_-	COG4758, COG4758, Predicted membrane protein [Function unknown]	NA|129aa|up_1|NC_016928.1_1977144_1977531_-	NA	NA|253aa|up_0|NC_016928.1_1977747_1978506_-	PRK05716, PRK05716, methionine aminopeptidase; Validated	NA|329aa|down_0|NC_016928.1_1979034_1980021_+	COG4129, COG4129, Predicted membrane protein [Function unknown]	NA|19aa|down_1|NC_016928.1_1980065_1980122_+	NA	NA|138aa|down_2|NC_016928.1_1980453_1980867_-	NA	NA|37aa|down_3|NC_016928.1_1980895_1981006_-	NA	NA|244aa|down_4|NC_016928.1_1981091_1981823_-	COG3442, COG3442, Predicted glutamine amidotransferase [General function prediction only]	NA|438aa|down_5|NC_016928.1_1981824_1983138_-	COG0769, MurE, UDP-N-acetylmuramyl tripeptide synthase [Cell envelope biogenesis, outer membrane]	NA|167aa|down_6|NC_016928.1_1983429_1983930_+	COG1528, Ftn, Ferritin-like protein [Inorganic ion transport and metabolism]	NA|31aa|down_7|NC_016928.1_1984011_1984104_-	NA	DEDDh|185aa|down_8|NC_016928.1_1984320_1984875_+	cd06130, DNA_pol_III_epsilon_like, an uncharacterized bacterial subgroup of the DEDDh 3'-5' exonuclease domain family with similarity to the epsilon subunit of DNA polymerase III	NA|357aa|down_9|NC_016928.1_1984941_1986012_-	PRK02406, PRK02406, DNA polymerase IV; Validated
GCF_000237125.1_ASM23712v1	NC_016928	Staphylococcus aureus subsp. aureus M013, complete genome	8	2038456-2038541	7	CRISPRCasFinder	no		WYL,cas3,DEDDh,DinG,csa3	Orphan	TGTTGAGGCCCCACCCCAACTTACATTGT	29	0	0	NA	NA	NA	1	1	Orphan	WYL,cas3,DEDDh,DinG,csa3	NA|59aa|up_7|NC_016928.1_2028598_2028775_-,NA|33aa|up_6|NC_016928.1_2029016_2029115_-,NA|33aa|up_2|NC_016928.1_2034100_2034199_-,NA|22aa|down_6|NC_016928.1_2045661_2045727_+	NA|299aa|up_9|NC_016928.1_2026785_2027682_-	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms]	NA|127aa|up_8|NC_016928.1_2027678_2028059_-	COG1725, COG1725, Predicted transcriptional regulators [Transcription]	NA|59aa|up_7|NC_016928.1_2028598_2028775_-	NA	NA|33aa|up_6|NC_016928.1_2029016_2029115_-	NA	NA|429aa|up_5|NC_016928.1_2029314_2030601_+	PRK08637, PRK08637, hypothetical protein; Provisional	NA|579aa|up_4|NC_016928.1_2030879_2032616_-	pfam03642, MAP, MAP domain	NA|331aa|up_3|NC_016928.1_2033004_2033997_+	TIGR03395, Sphingomyelinase_C, sphingomyelin phosphodiesterase	NA|33aa|up_2|NC_016928.1_2034100_2034199_-	NA	NA|339aa|up_1|NC_016928.1_2034489_2035506_-	pfam07968, Leukocidin, Leukocidin/Hemolysin toxin family	NA|408aa|up_0|NC_016928.1_2037017_2038241_+	PRK08588, PRK08588, succinyl-diaminopimelate desuccinylase; Reviewed	NA|436aa|down_0|NC_016928.1_2038681_2039989_+	COG0168, TrkG, Trk-type K+ transport systems, membrane components [Inorganic ion transport and metabolism]	NA|539aa|down_1|NC_016928.1_2040529_2042146_-	PRK00013, groEL, chaperonin GroEL; Reviewed	NA|95aa|down_2|NC_016928.1_2042221_2042506_-	PRK00364, groES, co-chaperonin GroES; Reviewed	NA|248aa|down_3|NC_016928.1_2042680_2043424_+	pfam02517, Abi, CAAX protease self-immunity	NA|400aa|down_4|NC_016928.1_2043448_2044648_-	PRK10819, PRK10819, transport protein TonB; Provisional	NA|209aa|down_5|NC_016928.1_2044844_2045471_+	COG3560, FMR2, Predicted oxidoreductase related to nitroreductase [General function prediction only]	NA|22aa|down_6|NC_016928.1_2045661_2045727_+	NA	NA|262aa|down_7|NC_016928.1_2045831_2046617_+	cd07583, nitrilase_5, Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases)	NA|45aa|down_8|NC_016928.1_2047215_2047350_-	PRK14752, PRK14752, delta-lysin family phenol-soluble modulin	NA|190aa|down_9|NC_016928.1_2047585_2048155_+	smart00793, AgrB, Accessory gene regulator B
GCF_000237125.1_ASM23712v1	NC_016928	Staphylococcus aureus subsp. aureus M013, complete genome	9	2286026-2286110	8	CRISPRCasFinder	no		WYL,cas3,DEDDh,DinG,csa3	Orphan	CCAACTTGCACATTATTGTATGCTGACTTT	30	1	2	2286056-2286080|2286056-2286080	NC_016928.1_1874396-1874420|NC_016928.1_2286112-2286136	NA	1	1	Orphan	WYL,cas3,DEDDh,DinG,csa3	NA|55aa|up_9|NC_016928.1_2276533_2276698_+,NA|106aa|up_8|NC_016928.1_2276942_2277260_+,NA|84aa|up_5|NC_016928.1_2282384_2282636_+,NA|57aa|up_0|NC_016928.1_2285776_2285947_+,NA	NA|55aa|up_9|NC_016928.1_2276533_2276698_+	NA	NA|106aa|up_8|NC_016928.1_2276942_2277260_+	NA	NA|1056aa|up_7|NC_016928.1_2277446_2280614_-	COG0841, AcrB, Cation/multidrug efflux pump [Defense mechanisms]	NA|422aa|up_6|NC_016928.1_2280730_2281996_-	COG2348, COG2348, Peptidoglycan interpeptide bridge formation enzyme [Cell wall/membrane/envelope biogenesis]	NA|84aa|up_5|NC_016928.1_2282384_2282636_+	NA	NA|255aa|up_4|NC_016928.1_2282627_2283392_-	pfam13468, Glyoxalase_3, Glyoxalase-like domain	NA|147aa|up_3|NC_016928.1_2283554_2283995_+	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|404aa|up_2|NC_016928.1_2283987_2285199_+	cd17489, MFS_YfcJ_like, Escherichia coli YfcJ, YhhS, and similar transporters of the Major Facilitator Superfamily	NA|117aa|up_1|NC_016928.1_2285300_2285651_-	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family	NA|57aa|up_0|NC_016928.1_2285776_2285947_+	NA	NA|341aa|down_0|NC_016928.1_2286287_2287310_-	TIGR02666, Cyclic_pyranopterin_monophosphate_synthase, molybdenum cofactor biosynthesis protein A, bacterial	NA|200aa|down_1|NC_016928.1_2287329_2287929_-	PRK00317, mobA, molybdopterin-guanine dinucleotide biosynthesis protein MobA; Reviewed	NA|78aa|down_2|NC_016928.1_2287935_2288169_-	cd00754, Ubl_MoaD, ubiquitin-like (Ubl) domain found in molybdenum cofactor biosynthesis protein D (MoaD) and similar proteins	NA|149aa|down_3|NC_016928.1_2288174_2288621_-	COG0314, MoaE, Molybdopterin converting factor, large subunit [Coenzyme metabolism]	NA|162aa|down_4|NC_016928.1_2288634_2289120_-	COG1763, MobB, Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]	NA|420aa|down_5|NC_016928.1_2289116_2290376_-	cd00887, MoeA, MoeA family	NA|165aa|down_6|NC_016928.1_2290438_2290933_+	PRK09364, moaC, cyclic pyranopterin monophosphate synthase MoaC	NA|169aa|down_7|NC_016928.1_2290934_2291441_-	COG0521, MoaB, Molybdopterin biosynthesis enzymes [Coenzyme metabolism]	NA|335aa|down_8|NC_016928.1_2291471_2292476_-	PRK07688, PRK07688, thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated	NA|202aa|down_9|NC_016928.1_2292644_2293250_-	COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
GCF_000237125.1_ASM23712v1	NC_016928	Staphylococcus aureus subsp. aureus M013, complete genome	10	2440586-2440678	9	CRISPRCasFinder	no		WYL,cas3,DEDDh,DinG,csa3	Orphan	TTCTTCAAATTTATTTGTTAGAAAG	25	0	0	NA	NA	NA	1	1	Orphan	WYL,cas3,DEDDh,DinG,csa3	NA|40aa|up_3|NC_016928.1_2437995_2438115_-,NA|35aa|up_2|NC_016928.1_2438239_2438344_+,NA|32aa|down_0|NC_016928.1_2440882_2440978_-,NA|61aa|down_2|NC_016928.1_2442556_2442739_-	NA|121aa|up_9|NC_016928.1_2432334_2432697_-	pfam14729, DUF4467, Domain of unknown function with cystatin-like fold (DUF4467)	NA|417aa|up_8|NC_016928.1_2432951_2434202_+	pfam02388, FemAB, FemAB family	NA|244aa|up_7|NC_016928.1_2434298_2435030_-	COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]	NA|240aa|up_6|NC_016928.1_2435026_2435746_-	COG0765, HisM, ABC-type amino acid transport system, permease component [Amino acid transport and metabolism]	NA|260aa|up_5|NC_016928.1_2435726_2436506_-	cd13711, PBP2_Ngo0372_TcyA, Substrate binding domain of ABC transporters involved in cystine import; the type 2 periplasmic binding protein fold	NA|468aa|up_4|NC_016928.1_2436626_2438030_-	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily	NA|40aa|up_3|NC_016928.1_2437995_2438115_-	NA	NA|35aa|up_2|NC_016928.1_2438239_2438344_+	NA	NA|229aa|up_1|NC_016928.1_2438497_2439184_-	PRK14119, gpmA, phosphoglyceromutase; Provisional	NA|289aa|up_0|NC_016928.1_2439509_2440376_-	COG0053, MMT1, Predicted Co/Zn/Cd cation transporters [Inorganic ion transport and metabolism]	NA|32aa|down_0|NC_016928.1_2440882_2440978_-	NA	NA|437aa|down_1|NC_016928.1_2441072_2442383_+	pfam11621, Sbi-IV, C3 binding domain 4 of IgG-bind protein SBI	NA|61aa|down_2|NC_016928.1_2442556_2442739_-	NA	NA|310aa|down_3|NC_016928.1_2442873_2443803_+	pfam07968, Leukocidin, Leukocidin/Hemolysin toxin family	NA|316aa|down_4|NC_016928.1_2444370_2445318_+	pfam07968, Leukocidin, Leukocidin/Hemolysin toxin family	NA|326aa|down_5|NC_016928.1_2445319_2446297_+	TIGR01002, synergohymenotropic_toxin, beta-channel forming cytolysin	NA|156aa|down_6|NC_016928.1_2446348_2446816_-	pfam06177, QueT, QueT transporter	NA|231aa|down_7|NC_016928.1_2446826_2447519_-	COG1424, BioW, Pimeloyl-CoA synthetase [Coenzyme metabolism]	NA|372aa|down_8|NC_016928.1_2447529_2448645_-	COG0156, BioF, 7-keto-8-aminopelargonate synthetase and related enzymes [Coenzyme metabolism]	NA|336aa|down_9|NC_016928.1_2448622_2449630_-	PRK06256, PRK06256, biotin synthase; Validated
GCF_000237125.1_ASM23712v1	NC_016928	Staphylococcus aureus subsp. aureus M013, complete genome	11	2782384-2782469	10	CRISPRCasFinder	no		WYL,cas3,DEDDh,DinG,csa3	Orphan	CCAACTTGCACATTATTGTAAGCTGACTTT	30	1	11	2782414-2782439|2782414-2782439|2782414-2782439|2782414-2782439|2782414-2782439|2782414-2782439|2782414-2782439|2782414-2782439|2782414-2782439|2782414-2782439|2782414-2782439	NC_016928.1_617087-617062|NC_016928.1_1286670-1286695|NC_016928.1_779129-779104|NC_016928.1_779185-779160|NC_016928.1_825042-825067|NC_016928.1_1845576-1845551|NC_016928.1_2028412-2028437|NC_016928.1_2203655-2203680|NC_016928.1_2320411-2320386|NC_016928.1_2124345-2124320|NC_016928.1_2124683-2124658	NA	1	1	Orphan	WYL,cas3,DEDDh,DinG,csa3	NA|64aa|up_6|NC_016928.1_2777861_2778053_+,NA|166aa|up_5|NC_016928.1_2778659_2779157_-,NA|64aa|up_4|NC_016928.1_2779613_2779805_+,NA|26aa|down_0|NC_016928.1_2782481_2782559_+	NA|171aa|up_9|NC_016928.1_2774338_2774851_-	COG3247, HdeD, Uncharacterized conserved protein [Function unknown]	NA|253aa|up_8|NC_016928.1_2775140_2775899_+	COG1136, SalX, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]	NA|627aa|up_7|NC_016928.1_2775888_2777769_+	pfam02687, FtsX, FtsX-like permease family	NA|64aa|up_6|NC_016928.1_2777861_2778053_+	NA	NA|166aa|up_5|NC_016928.1_2778659_2779157_-	NA	NA|64aa|up_4|NC_016928.1_2779613_2779805_+	NA	NA|67aa|up_3|NC_016928.1_2780196_2780397_+	COG1278, CspC, Cold shock proteins [Transcription]	NA|190aa|up_2|NC_016928.1_2780523_2781093_-	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|132aa|up_1|NC_016928.1_2781343_2781739_-	pfam11345, DUF3147, Protein of unknown function (DUF3147)	NA|118aa|up_0|NC_016928.1_2781806_2782160_-	pfam11345, DUF3147, Protein of unknown function (DUF3147)	NA|26aa|down_0|NC_016928.1_2782481_2782559_+	NA	NA|280aa|down_1|NC_016928.1_2782769_2783609_-	TIGR04285, parB-like_partition_protein, nucleoid occlusion protein	NA|240aa|down_2|NC_016928.1_2783651_2784371_-	PRK00107, gidB, 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG	NA|626aa|down_3|NC_016928.1_2784370_2786248_-	PRK05192, PRK05192, tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG	NA|460aa|down_4|NC_016928.1_2786314_2787694_-	PRK05291, trmE, tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE	NA|118aa|down_5|NC_016928.1_2787837_2788191_-	PRK00499, rnpA, ribonuclease P; Reviewed	NA|46aa|down_6|NC_016928.1_2788311_2788449_-	pfam00468, Ribosomal_L34, Ribosomal protein L34	NA|NA	NA	NA|NA	NA	NA|NA	NA
