The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NC_016928	Staphylococcus aureus subsp. aureus M013, complete genome	2788636	747993	755813	2788636		Hokovirus(16.67%)	10	NA	NA
WP_000244415.1|747993_749049_-	two-component sensor histidine kinase	NA	A0A1V0SGX0	Hokovirus	29.8	3.6e-14
WP_000149344.1|749048_749735_-	DNA-binding response regulator	NA	NA	NA	NA	NA
WP_001037807.1|749709_750183_-	DoxX family protein	NA	NA	NA	NA	NA
WP_001093553.1|750524_750965_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000637683.1|751244_751829_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001062976.1|751927_752641_-	7-carboxy-7-deazaguanine synthase QueE	NA	A0A1U9WRB6	Streptococcus_virus	43.5	6.5e-52
WP_000941336.1|752644_753064_-	6-carboxytetrahydropterin synthase QueD	NA	S4U060	uncultured_phage	28.7	6.3e-07
WP_000446724.1|753065_753734_-	7-cyano-7-deazaguanine synthase QueC	NA	A0A2H4J8Q7	uncultured_Caudovirales_phage	57.5	9.6e-66
WP_000604508.1|754084_754678_+	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	44.0	6.8e-39
WP_001217800.1|754661_755813_+	anthranilate synthase component I family protein	NA	S4VNU7	Pandoravirus	36.1	6.0e-23
>prophage 2
NC_016928	Staphylococcus aureus subsp. aureus M013, complete genome	2788636	767794	782304	2788636		uncultured_Caudovirales_phage(50.0%)	17	NA	NA
WP_000663039.1|767794_768853_+	histidinol-phosphate transaminase	NA	A0A1X6WGT4	Pacmanvirus	26.4	1.4e-21
WP_000197262.1|769011_769554_+	5'-3'-deoxyribonucleotidase	NA	NA	NA	NA	NA
WP_000429011.1|770161_771079_-	lipid kinase	NA	A0A1V0SBJ0	Catovirus	22.0	6.2e-07
WP_031760357.1|771171_771273_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000193751.1|771350_772856_-	peptide MFS transporter	NA	A0A0P0IY73	Acinetobacter_phage	32.2	2.0e-58
WP_071665613.1|772917_773166_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000930014.1|773195_773696_-	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	E7DN65	Pneumococcus_phage	71.5	5.9e-52
WP_001068497.1|773715_774582_-	EamA/RhaT family transporter	NA	NA	NA	NA	NA
WP_001790091.1|774966_775233_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000692521.1|775382_775781_+	protein NrdI	NA	A0A2H4J545	uncultured_Caudovirales_phage	72.0	1.2e-52
WP_000855509.1|775743_777849_+	class 1b ribonucleoside-diphosphate reductase subunit alpha	NA	A0A2H4J2N6	uncultured_Caudovirales_phage	91.6	0.0e+00
WP_000562498.1|777966_778938_+	class 1b ribonucleoside-diphosphate reductase subunit beta	NA	A0A2H4J4P3	uncultured_Caudovirales_phage	91.3	4.2e-171
WP_071665614.1|779194_779287_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000499195.1|779437_779593_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000876317.1|779631_780603_+	iron ABC transporter permease	NA	A0A2H4IY97	uncultured_Caudovirales_phage	78.6	3.6e-138
WP_001245572.1|780589_781546_+	iron ABC transporter permease	NA	A0A2H4J116	uncultured_Caudovirales_phage	57.8	1.2e-05
WP_000616873.1|781542_782304_+	iron ABC transporter ATP-binding protein	NA	Q9EMR9	Amsacta_moorei_entomopoxvirus	31.6	8.5e-18
>prophage 3
NC_016928	Staphylococcus aureus subsp. aureus M013, complete genome	2788636	862735	884236	2788636	terminase,integrase,coat	Staphylococcus_phage(77.78%)	35	861042:861063	881704:881725
861042:861063	attL	AGGGAGTGGGACAGAAATGATA	NA	NA	NA	NA
WP_000571213.1|862735_863761_+	methionine import ATP-binding protein MetN 2	NA	G9BWD6	Planktothrix_phage	36.8	9.4e-28
WP_000520233.1|863753_864449_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_000732334.1|864466_865288_+	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_000266157.1|865430_866651_-|integrase	site-specific integrase	integrase	Q4ZE80	Staphylococcus_phage	47.5	6.4e-100
WP_000733774.1|866738_867467_-	exotoxin	NA	A0EX09	Staphylococcus_phage	31.8	5.5e-22
WP_001033318.1|867490_868219_-	enterotoxin	NA	A0EX09	Staphylococcus_phage	35.4	1.0e-28
WP_001228759.1|868288_868720_-	hypothetical protein	NA	Q4ZCB6	Staphylococcus_virus	56.0	5.1e-36
WP_000281657.1|868736_869195_-	ImmA/IrrE family metallo-endopeptidase	NA	A0A0H4J322	Staphylococcus_phage	83.0	5.1e-66
WP_001260004.1|869206_869539_-	XRE family transcriptional regulator	NA	A0A1J0MFC1	Staphylococcus_phage	74.5	1.6e-37
WP_000243851.1|869731_869995_+	XRE family transcriptional regulator	NA	A0A2H4J9X2	uncultured_Caudovirales_phage	94.8	3.1e-36
WP_000091731.1|869987_870260_+	hypothetical protein	NA	Q4ZE77	Staphylococcus_phage	90.0	9.7e-41
WP_000784875.1|870271_870418_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001058486.1|870410_870620_+	hypothetical protein	NA	Q4ZE76	Staphylococcus_phage	94.2	1.7e-29
WP_001103942.1|870622_870943_+	DUF1474 domain-containing protein	NA	Q4ZE75	Staphylococcus_phage	51.9	1.3e-20
WP_001002732.1|871006_871876_+	hypothetical protein	NA	A0A1W6JQL5	Staphylococcus_phage	92.7	3.4e-156
WP_000390454.1|871892_873362_+	hypothetical protein	NA	A0A1W6JQD6	Staphylococcus_phage	99.0	2.9e-288
WP_001039168.1|873647_874010_+	hypothetical protein	NA	A0A1W6JQD5	Staphylococcus_phage	99.2	8.9e-66
WP_000998181.1|874011_874296_+	hypothetical protein	NA	A0A1W6JQE4	Staphylococcus_phage	95.7	1.9e-47
WP_001019764.1|874292_874934_+	hypothetical protein	NA	Q4ZE67	Staphylococcus_phage	91.5	1.5e-108
WP_001190615.1|875450_875792_+	hypothetical protein	NA	Q4ZE66	Staphylococcus_phage	99.1	1.4e-57
WP_000846285.1|875803_876382_+	hypothetical protein	NA	A0A2H4JBG0	uncultured_Caudovirales_phage	38.4	1.4e-28
WP_000448773.1|876399_876618_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000771368.1|876668_877196_+|coat	spore coat protein	coat	A0A1W6JQH7	Staphylococcus_phage	97.1	3.5e-87
WP_045181470.1|877327_877540_+	hypothetical protein	NA	Q4ZE86	Staphylococcus_phage	98.6	1.1e-31
WP_001293067.1|877536_878106_+|terminase	terminase small subunit	terminase	Q4ZE85	Staphylococcus_phage	97.9	1.0e-100
WP_000278085.1|878413_879214_+	enterotoxin	NA	A0A097PAT7	Streptococcus_pyogenes_phage	49.4	1.0e-53
WP_001035631.1|879291_879849_-	hypothetical protein	NA	A0A1W6JQE5	Staphylococcus_phage	73.8	1.4e-70
WP_001795626.1|880222_880375_+	hypothetical protein	NA	A0A0F6N3H2	Staphylococcus_phage	98.0	7.6e-19
WP_000139423.1|880445_880556_+	hypothetical protein	NA	W5R8J7	Staphylococcus_phage	100.0	1.7e-12
WP_000382163.1|880542_880743_+	hypothetical protein	NA	W5R9N2	Staphylococcus_phage	100.0	3.7e-29
WP_078065164.1|881443_881581_-	hypothetical protein	NA	NA	NA	NA	NA
WP_071665655.1|881652_881709_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000752917.1|881866_882061_+	CsbD family protein	NA	NA	NA	NA	NA
881704:881725	attR	TATCATTTCTGTCCCACTCCCT	NA	NA	NA	NA
WP_001183851.1|882294_883146_-	DUF368 domain-containing protein	NA	NA	NA	NA	NA
WP_000168845.1|883474_884236_+	Fe-S cluster assembly ATPase SufC	NA	A0A1V0SE00	Indivirus	23.3	4.4e-06
>prophage 4
NC_016928	Staphylococcus aureus subsp. aureus M013, complete genome	2788636	972499	1016217	2788636	bacteriocin,protease,holin,transposase,tRNA	Streptococcus_phage(33.33%)	40	NA	NA
WP_000277724.1|972499_974146_+|transposase	IS5/IS1182 family transposase	transposase	A0ZS58	Staphylococcus_virus	98.9	2.4e-291
WP_000448937.1|974171_975161_-|tRNA	tryptophan--tRNA ligase	tRNA	NA	NA	NA	NA
WP_000258003.1|975455_975851_+	transcriptional regulator Spx	NA	NA	NA	NA	NA
WP_001217728.1|976221_976941_+	adaptor protein MecA	NA	NA	NA	NA	NA
WP_000959298.1|977061_978048_+	competence protein CoiA	NA	NA	NA	NA	NA
WP_000082725.1|978095_979904_+	oligoendopeptidase F	NA	A0A1X9I5X5	Streptococcus_phage	24.5	5.5e-47
WP_000896697.1|980363_981170_-	DsbA family protein	NA	NA	NA	NA	NA
WP_000214067.1|981192_981558_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000224622.1|981661_982255_-	CYTH domain-containing protein	NA	NA	NA	NA	NA
WP_001242107.1|982440_982788_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001077683.1|982804_983440_+	GTP pyrophosphokinase	NA	NA	NA	NA	NA
WP_001270834.1|983456_984266_+	NAD(+) kinase	NA	NA	NA	NA	NA
WP_000669925.1|984262_985117_+	RluA family pseudouridine synthase	NA	NA	NA	NA	NA
WP_000062407.1|985137_986523_+	magnesium transporter	NA	NA	NA	NA	NA
WP_000395162.1|986532_988377_+	sodium:proton antiporter	NA	NA	NA	NA	NA
WP_000933195.1|988655_989426_+	enoyl-[acyl-carrier-protein] reductase FabI	NA	NA	NA	NA	NA
WP_000933105.1|989622_990708_-	AI-2E family transporter	NA	NA	NA	NA	NA
WP_000570701.1|991049_992618_+	alanine:cation symporter family protein	NA	NA	NA	NA	NA
WP_000889183.1|992760_993519_+	esterase family protein	NA	NA	NA	NA	NA
WP_001060547.1|993684_994410_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000355328.1|994411_995263_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000600387.1|995997_996507_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001824107.1|996619_997828_-	MFS transporter	NA	NA	NA	NA	NA
WP_000258650.1|997787_998963_-	diacylglycerol beta-glucosyltransferase	NA	NA	NA	NA	NA
WP_000340127.1|999395_1000880_+	UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L- lysine ligase	NA	NA	NA	NA	NA
WP_001798480.1|1000860_1001121_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001049958.1|1001120_1002683_+	peptide chain release factor 3	NA	A0A1S5SF82	Streptococcus_phage	28.0	3.2e-35
WP_000928413.1|1002984_1003788_+	membrane protein	NA	S5MAL1	Bacillus_phage	40.5	1.6e-30
WP_001823780.1|1004018_1004642_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014363401.1|1004683_1006327_+|protease	serine protease	protease	W5SAB9	Pithovirus	27.4	1.5e-11
WP_000021872.1|1006343_1007702_+	Ktr system potassium uptake protein D	NA	NA	NA	NA	NA
WP_000414178.1|1007840_1009352_+	bifunctional metallophosphatase/5'-nucleotidase	NA	NA	NA	NA	NA
WP_000287265.1|1009840_1010410_-	competence protein ComK	NA	NA	NA	NA	NA
WP_000876826.1|1010619_1010838_+	IDEAL domain-containing protein	NA	NA	NA	NA	NA
WP_000668820.1|1010918_1011905_-	lipoate--protein ligase A	NA	NA	NA	NA	NA
WP_000214898.1|1012103_1012280_+	DUF2187 domain-containing protein	NA	NA	NA	NA	NA
WP_001033867.1|1012294_1012897_+|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_014363402.1|1013292_1014939_+|transposase	IS5/IS1182 family transposase	transposase	A0A146ICT8	Staphylococcus_phage	99.3	3.7e-292
WP_001788568.1|1015193_1015301_+|holin	putative holin-like toxin	holin	NA	NA	NA	NA
WP_029656376.1|1015950_1016217_+|bacteriocin	bacteriocin transporter	bacteriocin	NA	NA	NA	NA
>prophage 5
NC_016928	Staphylococcus aureus subsp. aureus M013, complete genome	2788636	1050447	1058902	2788636		Synechococcus_phage(33.33%)	9	NA	NA
WP_072491658.1|1050447_1050912_+	5-(carboxyamino)imidazole ribonucleotide mutase	NA	A0A2P0VNU7	Tetraselmis_virus	43.8	1.9e-20
WP_001010401.1|1050898_1052023_+	5-(carboxyamino)imidazole ribonucleotide synthase	NA	NA	NA	NA	NA
WP_000174047.1|1052026_1052731_+	phosphoribosylaminoimidazolesuccinocarboxamide synthase	NA	M4R1E8	Synechococcus_phage	41.2	1.4e-46
WP_000848350.1|1052730_1052994_+	phosphoribosylformylglycinamidine synthase subunit PurS	NA	NA	NA	NA	NA
WP_000666799.1|1052995_1053667_+	phosphoribosylformylglycinamidine synthase subunit PurQ	NA	NA	NA	NA	NA
WP_000032747.1|1053659_1055849_+	phosphoribosylformylglycinamidine synthase subunit PurL	NA	A6N228	Microbacterium_phage	39.7	1.8e-140
WP_000483727.1|1055827_1057312_+	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	31.5	1.6e-44
WP_000030810.1|1057304_1058333_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	41.4	1.3e-61
WP_000238670.1|1058335_1058902_+	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	40.1	3.6e-29
>prophage 6
NC_016928	Staphylococcus aureus subsp. aureus M013, complete genome	2788636	1316832	1321781	2788636		Staphylococcus_phage(100.0%)	9	NA	NA
WP_001659797.1|1316832_1317030_+	hypothetical protein	NA	A0A1W6JNK0	Staphylococcus_phage	48.4	1.7e-10
WP_078065144.1|1317718_1317943_+	hypothetical protein	NA	A0A1W6JNK0	Staphylococcus_phage	71.0	4.3e-18
WP_001002343.1|1318238_1318445_+	hypothetical protein	NA	A0A2H4PQT0	Staphylococcus_phage	56.7	1.9e-12
WP_001788716.1|1319140_1319251_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000006110.1|1319679_1319865_+	hypothetical protein	NA	A0A0F6N3H3	Staphylococcus_phage	78.7	2.4e-19
WP_000477491.1|1320376_1320481_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000956747.1|1320607_1320859_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001813273.1|1321332_1321587_+	hypothetical protein	NA	A0A1J0MF61	Staphylococcus_phage	62.7	1.4e-25
WP_000780597.1|1321586_1321781_+	hypothetical protein	NA	A0A1J0MG79	Staphylococcus_phage	71.4	2.8e-18
>prophage 7
NC_016928	Staphylococcus aureus subsp. aureus M013, complete genome	2788636	1498628	1580608	2788636	portal,capsid,integrase,protease,holin,tail,head,terminase,tRNA	Staphylococcus_phage(84.42%)	105	1558444:1558458	1576425:1576439
WP_000858801.1|1498628_1499921_-|tRNA	asparagine--tRNA ligase	tRNA	A0A2P1EMB4	Moumouvirus	30.0	1.5e-54
WP_000525065.1|1500214_1502935_-	ATP-dependent helicase	NA	A0A1X9I5C8	Streptococcus_phage	34.6	1.1e-46
WP_000049916.1|1502958_1503930_-	biotin--[acetyl-CoA-carboxylase] ligase	NA	NA	NA	NA	NA
WP_000361537.1|1503916_1505119_-|tRNA	CCA tRNA nucleotidyltransferase	tRNA	H7BUW3	unidentified_phage	43.3	5.4e-35
WP_000690024.1|1505123_1506266_-	N-acetyl-alpha-D-glucosaminyl L-malate synthase BshA	NA	NA	NA	NA	NA
WP_000839926.1|1506523_1506841_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001827022.1|1507176_1507857_-	zinc metallopeptidase	NA	NA	NA	NA	NA
WP_000154692.1|1507928_1508516_-	DUF1405 domain-containing protein	NA	NA	NA	NA	NA
WP_000005216.1|1508505_1509081_-	IDEAL domain-containing protein	NA	G3MAV7	Bacillus_virus	27.2	2.7e-08
WP_078065170.1|1509094_1510198_-	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_000245912.1|1510345_1511644_-	3-phosphoshikimate 1-carboxyvinyltransferase	NA	NA	NA	NA	NA
WP_000776330.1|1511653_1512718_-	3-dehydroquinate synthase	NA	NA	NA	NA	NA
WP_001269940.1|1512743_1513910_-	chorismate synthase	NA	A0A291AU41	Pandoravirus	32.3	2.6e-34
WP_000789522.1|1514296_1514497_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000442477.1|1514706_1515156_-	nucleoside-diphosphate kinase	NA	D2E8E1	Anguillid_herpesvirus	43.8	2.4e-28
WP_078062714.1|1515247_1516192_-	heptaprenyl diphosphate synthase	NA	A0A1V0SE37	Indivirus	24.4	1.3e-10
WP_000774684.1|1516208_1516934_-	demethylmenaquinone methyltransferase	NA	NA	NA	NA	NA
WP_000450555.1|1516936_1517509_-	heptaprenyl pyrophosphate synthase subunit A	NA	NA	NA	NA	NA
WP_031844923.1|1517435_1517750_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001043863.1|1517939_1518212_-	DNA-binding protein HU	NA	A7KV42	Bacillus_phage	73.3	4.2e-28
WP_000161742.1|1518382_1519381_-	NAD(P)H-dependent glycerol-3-phosphate dehydrogenase	NA	NA	NA	NA	NA
WP_000165530.1|1519397_1520708_-	ribosome biogenesis GTPase Der	NA	NA	NA	NA	NA
WP_000133960.1|1520924_1522100_-	30S ribosomal protein S1	NA	NA	NA	NA	NA
WP_031844924.1|1522355_1522547_-	hypothetical protein	NA	NA	NA	NA	NA
WP_031844925.1|1522500_1522638_+	hypothetical protein	NA	NA	NA	NA	NA
WP_031844926.1|1522663_1522768_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000644394.1|1522810_1523470_-	(d)CMP kinase	NA	NA	NA	NA	NA
WP_000681761.1|1523546_1524515_+	asparaginase	NA	NA	NA	NA	NA
WP_001174260.1|1524629_1525616_-	FAD-binding protein	NA	NA	NA	NA	NA
WP_001824277.1|1525776_1525893_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000069308.1|1526017_1527478_-	LysM peptidoglycan-binding domain-containing protein	NA	NA	NA	NA	NA
WP_000902114.1|1527630_1529010_-	ATP-dependent DNA helicase RecQ	NA	L7RCS0	Acanthamoeba_polyphaga_moumouvirus	33.6	2.2e-56
WP_001163813.1|1528999_1529953_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001151997.1|1530060_1530309_+	ferredoxin	NA	A0A127AYY7	Bacillus_phage	48.0	8.3e-15
WP_001186908.1|1530414_1530960_-	ECF transporter S component	NA	NA	NA	NA	NA
WP_000476869.1|1531362_1532307_-	DUF1672 domain-containing protein	NA	NA	NA	NA	NA
WP_000476889.1|1532364_1533270_-	DUF1672 domain-containing protein	NA	NA	NA	NA	NA
WP_061820357.1|1533360_1533612_-	hypothetical protein	NA	A0ZS61	Staphylococcus_virus	96.7	2.0e-24
WP_024937002.1|1533794_1534778_-	Panton-Valentine bi-component leukocidin subunit F	NA	A0A2I6PEU3	Staphylococcus_phage	100.0	4.0e-185
WP_000239544.1|1534773_1535712_-	Panton-Valentine bi-component leukocidin subunit S	NA	A0A2I6PF61	Staphylococcus_phage	100.0	1.7e-180
WP_000909204.1|1536101_1537556_-	CHAP domain-containing protein	NA	A0A2I6PF47	Staphylococcus_phage	100.0	7.5e-289
WP_000339141.1|1537566_1537869_-|holin	phage holin	holin	A0A2I6PF56	Staphylococcus_phage	100.0	3.1e-48
WP_000340977.1|1537994_1538369_-	hypothetical protein	NA	G4KNR3	Staphylococcus_phage	100.0	3.3e-39
WP_001040259.1|1538424_1538712_-	hypothetical protein	NA	G4KNR2	Staphylococcus_phage	100.0	9.9e-44
WP_001153681.1|1538758_1538911_-	hypothetical protein	NA	D2JLG0	Staphylococcus_phage	100.0	5.2e-20
WP_000582126.1|1538900_1542686_-	hypothetical protein	NA	G4KNR1	Staphylococcus_phage	100.0	0.0e+00
WP_000567420.1|1542701_1544186_-|tail	phage tail protein	tail	G4KNR0	Staphylococcus_phage	100.0	1.6e-299
WP_000504558.1|1544185_1548727_-|tail	phage tail tape measure protein	tail	A0A2I6PE03	Staphylococcus_phage	100.0	0.0e+00
WP_001096355.1|1548971_1549322_-	hypothetical protein	NA	G4KNQ8	Staphylococcus_phage	100.0	7.8e-59
WP_071621395.1|1549371_1549596_-	hypothetical protein	NA	A0A075LYE8	Staphylococcus_phage	100.0	3.0e-32
WP_000268740.1|1549637_1550282_-|tail	phage tail protein	tail	G4KNQ7	Staphylococcus_phage	100.0	6.5e-120
WP_000565498.1|1550282_1550690_-	hypothetical protein	NA	G4KNQ6	Staphylococcus_phage	100.0	7.1e-72
WP_000114226.1|1550686_1551091_-	hypothetical protein	NA	G4KNQ5	Staphylococcus_phage	100.0	4.3e-69
WP_000755150.1|1551087_1551450_-|head,tail	phage head-tail adapter protein	head,tail	G4KNQ4	Staphylococcus_phage	100.0	4.4e-65
WP_000150936.1|1551433_1551718_-|head,tail	phage head-tail adapter protein	head,tail	A0A2I6PDJ5	Staphylococcus_phage	100.0	2.3e-45
WP_000238236.1|1551707_1551992_-	hypothetical protein	NA	A0A2I6PDJ3	Staphylococcus_phage	100.0	1.8e-45
WP_000154559.1|1552011_1553157_-|capsid	phage major capsid protein	capsid	G4KNQ3	Staphylococcus_phage	100.0	9.6e-215
WP_000642728.1|1553180_1553918_-|protease	Clp protease ClpP	protease	G4KNQ2	Staphylococcus_phage	100.0	1.8e-129
WP_000025272.1|1553901_1555089_-|portal	phage portal protein	portal	G4KNQ1	Staphylococcus_phage	100.0	4.6e-220
WP_000625097.1|1555104_1556766_-|terminase	terminase large subunit	terminase	G4KNQ0	Staphylococcus_phage	100.0	0.0e+00
WP_000402904.1|1556762_1557107_-	hypothetical protein	NA	G4KNP9	Staphylococcus_phage	100.0	9.4e-57
WP_000590123.1|1557767_1558184_-	hypothetical protein	NA	G4KNP7	Staphylococcus_phage	99.3	1.9e-75
WP_000265043.1|1558211_1558412_-	hypothetical protein	NA	A0A2I6PDV9	Staphylococcus_phage	100.0	1.4e-28
WP_001005262.1|1558411_1559062_-	hypothetical protein	NA	D2JLD8	Staphylococcus_phage	100.0	8.9e-117
1558444:1558458	attL	TAATTCTTTCTTTTA	NA	NA	NA	NA
WP_000501856.1|1559220_1559385_-	transcriptional activator RinB	NA	A0A2I6PDY4	Staphylococcus_phage	100.0	3.9e-21
WP_001125015.1|1559372_1559573_-	hypothetical protein	NA	A0A2I6PF22	Staphylococcus_phage	100.0	1.8e-28
WP_000195782.1|1559547_1559736_-	DUF1381 domain-containing protein	NA	A0A2I6PDV0	Staphylococcus_phage	100.0	2.1e-26
WP_001282074.1|1559732_1559978_-	hypothetical protein	NA	A0A2I6PDW7	Staphylococcus_phage	100.0	5.0e-36
WP_001061834.1|1560014_1560521_-	hypothetical protein	NA	G4KNP5	Staphylococcus_phage	100.0	1.0e-91
WP_000454994.1|1560697_1560979_-	hypothetical protein	NA	A0A2I6PDX3	Staphylococcus_phage	100.0	8.5e-48
WP_001065099.1|1561142_1561394_-	DUF1024 domain-containing protein	NA	G4KNP4	Staphylococcus_phage	100.0	6.4e-39
WP_000131388.1|1561408_1561651_-	hypothetical protein	NA	A0A2I6PDU1	Staphylococcus_phage	100.0	3.9e-41
WP_000029366.1|1561654_1562011_-	hypothetical protein	NA	G4KNP3	Staphylococcus_phage	100.0	1.1e-60
WP_001187236.1|1562011_1562197_-	DUF3113 domain-containing protein	NA	A0A068A236	Staphylococcus_phage	95.1	7.8e-26
WP_000049798.1|1562201_1562606_-	hypothetical protein	NA	G4KNP2	Staphylococcus_phage	100.0	1.6e-68
WP_001123669.1|1562615_1562837_-	hypothetical protein	NA	A0A2I6PDV8	Staphylococcus_phage	100.0	1.7e-35
WP_000256594.1|1562849_1563008_-	hypothetical protein	NA	A0A2I6PDX0	Staphylococcus_phage	98.1	4.5e-22
WP_000803062.1|1563001_1563781_-	DNA replication protein DnaC	NA	G4KNP1	Staphylococcus_phage	100.0	3.8e-146
WP_000190254.1|1563790_1564561_-	hypothetical protein	NA	G4KNP0	Staphylococcus_phage	100.0	6.4e-122
WP_000414755.1|1564626_1564908_+	hypothetical protein	NA	A0A1W6JPU7	Staphylococcus_phage	100.0	2.6e-49
WP_000057262.1|1565046_1565721_-	hypothetical protein	NA	G4KNN9	Staphylococcus_phage	100.0	8.6e-131
WP_001099007.1|1565732_1566176_-	single-stranded DNA-binding protein	NA	G4KNN8	Staphylococcus_phage	100.0	1.4e-76
WP_000840496.1|1566172_1566823_-	single-stranded DNA-binding protein	NA	A0A0F6N3I5	Staphylococcus_phage	100.0	1.1e-119
WP_001004336.1|1566823_1567360_-	hypothetical protein	NA	A0A0F6N4M6	Staphylococcus_phage	100.0	1.4e-80
WP_001108164.1|1567372_1567705_-	DUF1108 domain-containing protein	NA	A0A2I6PDT0	Staphylococcus_phage	100.0	2.9e-55
WP_000829610.1|1567637_1567955_-	hypothetical protein	NA	A0A2I6PEL3	Staphylococcus_phage	100.0	3.9e-33
WP_001285954.1|1568043_1568205_-	DUF1270 domain-containing protein	NA	A7TWM3	Staphylococcus_phage	100.0	8.6e-21
WP_001124198.1|1568216_1568480_-	helix-turn-helix domain-containing protein	NA	A0A2I6PEL8	Staphylococcus_phage	100.0	2.5e-46
WP_001037095.1|1568509_1568728_-	hypothetical protein	NA	A0A2I6PDV4	Staphylococcus_phage	100.0	5.0e-32
WP_000435343.1|1569283_1569544_-	hypothetical protein	NA	A0A2I6PDT7	Staphylococcus_phage	100.0	3.5e-40
WP_001148617.1|1569556_1570309_-	oxidoreductase	NA	G4KNN1	Staphylococcus_phage	100.0	1.1e-139
WP_000801108.1|1570369_1570597_+	hypothetical protein	NA	A7TWL9	Staphylococcus_phage	100.0	1.7e-38
WP_000502678.1|1570598_1570790_-	hypothetical protein	NA	A0A2I6PDT1	Staphylococcus_phage	100.0	9.5e-27
WP_000772137.1|1570846_1571056_+	hypothetical protein	NA	A0A2I6PDR8	Staphylococcus_phage	100.0	9.1e-31
WP_000435346.1|1571202_1571646_-	hypothetical protein	NA	G4KNN0	Staphylococcus_phage	100.0	2.0e-75
WP_000548578.1|1571658_1571898_-	XRE family transcriptional regulator	NA	G4KNM9	Staphylococcus_phage	100.0	2.3e-38
WP_000094093.1|1572068_1572776_+	XRE family transcriptional regulator	NA	G4KNM8	Staphylococcus_phage	100.0	7.7e-130
WP_001089804.1|1572929_1573115_+	hypothetical protein	NA	A0A2I6PDS4	Staphylococcus_phage	100.0	2.3e-25
WP_000705240.1|1573314_1573497_+	hypothetical protein	NA	A0A2I6PDR4	Staphylococcus_phage	100.0	5.3e-27
WP_001013104.1|1573532_1573679_+	hypothetical protein	NA	A0A2I6PEK8	Staphylococcus_phage	89.6	1.1e-14
WP_000191466.1|1573675_1574290_-	hypothetical protein	NA	A0A2I6PEZ0	Staphylococcus_phage	100.0	6.7e-106
WP_000264751.1|1574415_1575621_+|integrase	site-specific integrase	integrase	A0A2I6PEN0	Staphylococcus_phage	100.0	7.7e-223
WP_014363427.1|1575663_1577550_-	hypothetical protein	NA	B5WZK7	Staphylococcus_phage	92.5	3.1e-109
1576425:1576439	attR	TAATTCTTTCTTTTA	NA	NA	NA	NA
WP_001824281.1|1577701_1578610_-	DUF1672 domain-containing protein	NA	NA	NA	NA	NA
WP_000987767.1|1578856_1580608_-	two-component sensor histidine kinase	NA	A0A1V0SGX0	Hokovirus	33.6	2.6e-22
>prophage 8
NC_016928	Staphylococcus aureus subsp. aureus M013, complete genome	2788636	1636435	1644746	2788636	tRNA	Staphylococcus_phage(16.67%)	7	NA	NA
WP_001213908.1|1636435_1637221_-	metal ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	28.3	8.0e-19
WP_000924210.1|1637346_1638237_-	deoxyribonuclease IV	NA	A0A2H4UU70	Bodo_saltans_virus	33.1	3.4e-26
WP_001062178.1|1638227_1639592_-	ATP-dependent helicase	NA	A0A1V0SIR5	Klosneuvirus	34.0	2.4e-55
WP_000683914.1|1639705_1640806_-	Nif3-like dinuclear metal center hexameric protein	NA	A0A1S5V250	Saudi_moumouvirus	30.6	1.0e-08
WP_000624567.1|1640808_1641486_-|tRNA	tRNA (adenine-N(1))-methyltransferase	tRNA	NA	NA	NA	NA
WP_001283055.1|1641616_1642723_-	RNA polymerase sigma factor SigA	NA	A0A2I7SAT0	Vibrio_phage	38.1	1.1e-37
WP_001217251.1|1642946_1644746_-	DNA primase	NA	A0A0K1LMQ9	Caulobacter_phage	36.0	3.5e-54
>prophage 9
NC_016928	Staphylococcus aureus subsp. aureus M013, complete genome	2788636	1850265	1896193	2788636	protease,tRNA	Staphylococcus_phage(94.29%)	45	NA	NA
WP_001050576.1|1850265_1856823_-	DUF1542 domain-containing protein	NA	A0A2H4PQU6	Staphylococcus_phage	93.2	1.2e-290
WP_000836467.1|1857148_1857460_-	rhodanese-like domain-containing protein	NA	A0A2H4PQR9	Staphylococcus_phage	98.1	5.3e-51
WP_001108730.1|1857481_1859896_-|tRNA	leucine--tRNA ligase	tRNA	A0A2H4PQS0	Staphylococcus_phage	99.5	0.0e+00
WP_001025062.1|1860187_1861369_-	MFS transporter	NA	A0A2H4PQR6	Staphylococcus_phage	99.5	1.2e-217
WP_000526539.1|1861478_1862432_+	TIGR01212 family radical SAM protein	NA	A0A2H4PQV5	Staphylococcus_phage	100.0	2.2e-79
WP_000764429.1|1862428_1862992_+	methyltransferase domain-containing protein	NA	A0A2H4PQV0	Staphylococcus_phage	98.9	9.2e-102
WP_000757543.1|1863111_1863513_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_000266100.1|1864084_1864912_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_014937042.1|1864914_1865034_-	hypothetical protein	NA	NA	NA	NA	NA
WP_071665630.1|1865045_1865237_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001196343.1|1865145_1866147_+	proline dehydrogenase	NA	A0A2H4PQT6	Staphylococcus_phage	98.8	1.7e-183
WP_001008551.1|1866268_1866733_-	6,7-dimethyl-8-ribityllumazine synthase	NA	A0A2H4PQS3	Staphylococcus_phage	99.4	5.8e-70
WP_001159028.1|1866745_1867927_-	bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II	NA	A0A2H4PQS2	Staphylococcus_phage	99.2	1.6e-225
WP_000493883.1|1867937_1868570_-	riboflavin synthase	NA	A0A2H4PQS5	Staphylococcus_phage	98.6	2.4e-111
WP_000384177.1|1868576_1869608_-	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	NA	A0A2H4PQS8	Staphylococcus_phage	98.5	9.0e-196
WP_001261664.1|1870100_1871603_-	pyridine nucleotide-disulfide oxidoreductase	NA	A0A2H4PQX2	Staphylococcus_phage	98.6	1.1e-29
WP_000221186.1|1872124_1872439_+	ArsR family transcriptional regulator	NA	A0A2H4PQT4	Staphylococcus_phage	95.2	1.4e-51
WP_000989100.1|1872438_1873731_+	arsenical efflux pump membrane protein ArsB	NA	A0A2H4PQU3	Staphylococcus_phage	97.4	2.2e-223
WP_000163239.1|1873748_1874141_+	arsenate reductase (thioredoxin)	NA	A0A2H4PQT9	Staphylococcus_phage	99.2	6.9e-72
WP_071665631.1|1874287_1874464_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001032836.1|1874545_1875400_-	autolysin	NA	Q4ZCC7	Staphylococcus_virus	38.1	4.9e-38
WP_000384172.1|1875675_1875900_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001153740.1|1876677_1877121_+	competence protein ComK	NA	NA	NA	NA	NA
WP_001030460.1|1877107_1877551_-	hypothetical protein	NA	A0A2H4PQT8	Staphylococcus_phage	98.0	5.4e-57
WP_025175276.1|1877848_1878484_+|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_000492902.1|1878650_1879271_+|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_001096492.1|1879740_1880454_-	transaldolase	NA	M1PR54	Cyanophage	34.5	1.2e-18
WP_000091445.1|1880711_1881014_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001200550.1|1881269_1881635_+	fluoride efflux transporter CrcB	NA	A0A2H4PQR0	Staphylococcus_phage	98.3	6.2e-59
WP_000623471.1|1881631_1881985_+	camphor resistance protein CrcB	NA	A0A2H4PQQ7	Staphylococcus_phage	99.1	1.0e-21
WP_000453310.1|1882234_1883068_-	aldo/keto reductase	NA	A0A2H4PQR8	Staphylococcus_phage	99.3	1.3e-157
WP_000366163.1|1883279_1884188_-	NERD domain-containing protein	NA	A0A2H4PQQ8	Staphylococcus_phage	100.0	3.4e-138
WP_000933822.1|1884312_1885506_-	S-adenosylmethionine synthase	NA	A0A2H4PQS6	Staphylococcus_phage	99.7	1.9e-218
WP_000109912.1|1885877_1887470_+	phosphoenolpyruvate carboxykinase (ATP)	NA	A0A2H4PQN1	Staphylococcus_phage	99.8	0.0e+00
WP_078065176.1|1887763_1888510_-	S9 family peptidase	NA	A0A2H4PQM6	Staphylococcus_phage	98.0	7.8e-141
WP_000672009.1|1888514_1888988_-	nucleoside triphosphatase YtkD	NA	A0A2H4PQM4	Staphylococcus_phage	98.1	3.6e-83
WP_000718107.1|1889053_1889311_+	membrane protein insertion efficiency factor YidD	NA	A0A2H4PQM5	Staphylococcus_phage	100.0	7.2e-46
WP_000778518.1|1889307_1890309_-	o-succinylbenzoate synthase	NA	A0A2H4PQM0	Staphylococcus_phage	97.9	4.8e-186
WP_000348384.1|1890313_1891792_-	o-succinylbenzoate--CoA ligase	NA	A0A2H4PQM9	Staphylococcus_phage	96.7	3.4e-281
WP_078065177.1|1891951_1892407_-	DUF4909 domain-containing protein	NA	A0A2H4PQN7	Staphylococcus_phage	97.9	4.0e-79
WP_078065147.1|1892709_1893360_+	calcium-binding protein	NA	A0A2H4PQM8	Staphylococcus_phage	68.1	1.2e-31
WP_000070638.1|1893440_1894436_+	DUF4352 domain-containing protein	NA	A0A2H4PQN2	Staphylococcus_phage	92.7	1.7e-66
WP_000669039.1|1894511_1895138_+	hypothetical protein	NA	A0A2H4PQM7	Staphylococcus_phage	84.6	5.8e-81
WP_000627534.1|1895178_1895520_+	DUF3969 domain-containing protein	NA	A0A2H4PQN6	Staphylococcus_phage	93.8	2.8e-53
WP_000414219.1|1895620_1896193_+	hypothetical protein	NA	A0A2H4PQN4	Staphylococcus_phage	94.8	3.2e-25
>prophage 10
NC_016928	Staphylococcus aureus subsp. aureus M013, complete genome	2788636	1901746	1908879	2788636	transposase	Staphylococcus_phage(63.64%)	12	NA	NA
WP_001044434.1|1901746_1902601_-	M23 family peptidase	NA	E5G070	Clostridium_phage	37.9	6.4e-06
WP_049280116.1|1902851_1903397_-	hypothetical protein	NA	A0A2H4PQP5	Staphylococcus_phage	32.5	1.8e-09
WP_000669789.1|1903813_1903993_+	hypothetical protein	NA	A0A1W6JQ29	Staphylococcus_phage	100.0	2.2e-25
WP_001795394.1|1904016_1904325_+	hypothetical protein	NA	M9NTD8	Staphylococcus_phage	100.0	2.1e-39
WP_001791826.1|1904303_1904564_+	hypothetical protein	NA	M9NS66	Staphylococcus_phage	100.0	2.3e-23
WP_000702263.1|1904616_1904967_-	hypothetical protein	NA	A0A1P8L6B0	Staphylococcus_phage	100.0	7.5e-54
WP_000727649.1|1905651_1906101_+	chemotaxis inhibitory protein	NA	A0A1P8L6A8	Staphylococcus_phage	100.0	1.1e-78
WP_001110822.1|1906195_1906492_-	peptidoglycan hydrolase	NA	A0A1P8L6B4	Staphylococcus_phage	100.0	1.3e-51
WP_001791825.1|1906398_1906653_-	hypothetical protein	NA	Q4ZCK0	Staphylococcus_virus	93.0	8.0e-13
WP_001791824.1|1906579_1906735_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001066124.1|1906832_1907594_-|transposase	transposase	transposase	A0A059NT77	Lactococcus_phage	44.2	1.1e-54
WP_000777467.1|1907586_1908879_-|transposase	IS21 family transposase	transposase	A0A2L1IVA1	Escherichia_phage	30.8	2.6e-14
