assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000236585.1_ASM23658v1	NC_017278	Thermus sp. CCB_US3_UF1, complete genome	1	87978-88188	1,1,1	PILER-CR,CRISPRCasFinder,CRT	no		DinG,c2c9_V-U4,cmr6gr7,cmr5gr11,cmr4gr7,cmr1gr7,cmr3gr5,cas10,cas1,cas3,cas6,cas8b1,cas7,cas5,cas2,DEDDh,csm2gr11,csm3gr7,csm4gr5,csm5gr7,csx1,csa3	Orphan	GTAGTCCCCACGCACGTGGGGATGGACCG,GTAGTCCCCACGCACGTGGGGATGGACC,GTAGTCCCCACGCACGTGGGGATGGACCG	29,28,29	0	0	NA	NA	I-E,II-B:I-E,II-B:I-E,II-B	3,3,3	3	Orphan	DinG,c2c9_V-U4,cmr6gr7,cmr5gr11,cmr4gr7,cmr1gr7,cmr3gr5,cas10,cas1,cas3,cas6,cas8b1,cas7,cas5,cas2,DEDDh,csm2gr11,csm3gr7,csm4gr5,csm5gr7,csx1,csa3	NA|666aa|up_7|NC_017278.1_74308_76306_-,NA|265aa|up_4|NC_017278.1_83121_83916_-,NA|90aa|up_3|NC_017278.1_83941_84211_-,NA	NA|364aa|up_9|NC_017278.1_67601_68693_+	pfam01609, DDE_Tnp_1, Transposase DDE domain	NA|1849aa|up_8|NC_017278.1_68709_74256_-	cd17923, DEXHc_Hrq1-like, DEAH-box helicase domain of Hrq1 and similar proteins	NA|666aa|up_7|NC_017278.1_74308_76306_-	NA	NA|1333aa|up_6|NC_017278.1_76310_80309_-	pfam02384, N6_Mtase, N-6 DNA Methylase	NA|919aa|up_5|NC_017278.1_80320_83077_-	cd18011, DEXDc_RapA, DEXH-box helicase domain of RapA	NA|265aa|up_4|NC_017278.1_83121_83916_-	NA	NA|90aa|up_3|NC_017278.1_83941_84211_-	NA	NA|153aa|up_2|NC_017278.1_84227_84686_-	cd17511, YbjN_AmyR-like, YbjN protein family is structurally similar to type III secretion system chaperones	NA|497aa|up_1|NC_017278.1_84689_86180_-	pfam05731, TROVE, TROVE domain	NA|407aa|up_0|NC_017278.1_86609_87830_+	pfam00872, Transposase_mut, Transposase, Mutator family	NA|622aa|down_0|NC_017278.1_88549_90415_-	cd09117, PLDc_Bfil_DEXD_like, Catalytic domain of type II restriction endonucleases BfiI and NgoFVII, and uncharacterized proteins with a DEAD domain	NA|229aa|down_1|NC_017278.1_91294_91981_-	cd03224, ABC_TM1139_LivF_branched, ATP-binding cassette domain of branched-chain amino acid transporter	NA|249aa|down_2|NC_017278.1_91977_92724_-	cd03219, ABC_Mj1267_LivG_branched, ATP-binding cassette component of branched chain amino acids transport system	NA|311aa|down_3|NC_017278.1_92704_93637_-	cd06581, TM_PBP1_LivM_like, Transmembrane subunit (TM) of Escherichia coli LivM and related proteins	NA|294aa|down_4|NC_017278.1_93633_94515_-	cd06582, TM_PBP1_LivH_like, Transmembrane subunit (TM) of Escherichia coli LivH and related proteins	NA|399aa|down_5|NC_017278.1_94518_95715_-	cd06330, PBP1_As_SBP-like, periplasmic substrate-binding domain of active transport proteins	NA|244aa|down_6|NC_017278.1_95725_96457_-	PRK05653, fabG, 3-oxoacyl-ACP reductase FabG	NA|431aa|down_7|NC_017278.1_96443_97736_-	cd05913, PaaK, Phenylacetate-CoA ligase (also known as PaaK)	NA|180aa|down_8|NC_017278.1_97838_98378_+	cd01106, HTH_TipAL-Mta, Helix-Turn-Helix DNA binding domain of the transcription regulators TipAL, Mta, and SkgA	NA|387aa|down_9|NC_017278.1_98268_99429_+	cd01155, ACAD_FadE2, Acyl-CoA dehydrogenases similar to fadE2
GCF_000236585.1_ASM23658v1	NC_017278	Thermus sp. CCB_US3_UF1, complete genome	2	256084-257261	2,2,2	PILER-CR,CRISPRCasFinder,CRT	no	cmr6gr7,cmr5gr11,cmr4gr7,cmr1gr7,cmr3gr5,cas10,cas1,cas3,cas6,cas8b1,cas7,cas5,cas2	DinG,c2c9_V-U4,cmr6gr7,cmr5gr11,cmr4gr7,cmr1gr7,cmr3gr5,cas10,cas1,cas3,cas6,cas8b1,cas7,cas5,cas2,DEDDh,csm2gr11,csm3gr7,csm4gr5,csm5gr7,csx1,csa3	Type I-B,Type III-B,Type III-A,Type III-C,Type III-D	GTTTCAAACCCTCATAGGTACGGTCAGAAC,GTTTCAAACCCTCATAGGTACGGTCAGAAC,GTTTCAAACCCTCATAGGTACGGTCAGAAC	30,30,30	0	0	NA	NA	NA:NA:NA	17,17,17	17	TypeI-B,TypeIII-B,TypeIII-A,TypeIII-C,TypeIII-D	DinG,c2c9_V-U4,cmr6gr7,cmr5gr11,cmr4gr7,cmr1gr7,cmr3gr5,cas10,cas1,cas3,cas6,cas8b1,cas7,cas5,cas2,DEDDh,csm2gr11,csm3gr7,csm4gr5,csm5gr7,csx1,csa3	NA|138aa|up_8|NC_017278.1_246083_246497_-,NA|649aa|up_7|NC_017278.1_247484_249431_+,NA	NA|440aa|up_9|NC_017278.1_244772_246092_+	PRK01077, PRK01077, cobyrinate a,c-diamide synthase	NA|138aa|up_8|NC_017278.1_246083_246497_-	NA	NA|649aa|up_7|NC_017278.1_247484_249431_+	NA	cmr6gr7|341aa|up_6|NC_017278.1_249427_250450_-	TIGR01898, repair_system, CRISPR type III-B/RAMP module RAMP protein Cmr6	cmr5gr11|115aa|up_5|NC_017278.1_250452_250797_-	pfam09701, Cas_Cmr5, CRISPR-associated protein (Cas_Cmr5)	cmr4gr7|288aa|up_4|NC_017278.1_250800_251664_-	TIGR02580, putative_CRISPR-associated_protein, CRISPR type III-B/RAMP module RAMP protein Cmr4	cmr1gr7|417aa|up_3|NC_017278.1_251660_252911_-	COG1367, COG1367, CRISPR system related protein, RAMP superfamily [Defense mechanisms]	cmr3gr5|370aa|up_2|NC_017278.1_252907_254017_-	cd09748, Cmr3_III-B, CRISPR/Cas system-associated RAMP superfamily protein Cmr3	cas10|591aa|up_1|NC_017278.1_254006_255779_-	TIGR02577, thermophile-specific_DNA_repair_system, CRISPR-associated protein Cas10/Cmr2, subtype III-B	NA|80aa|up_0|NC_017278.1_255827_256067_-	pfam09670, Cas_Cas02710, CRISPR-associated protein (Cas_Cas02710)	cas1|328aa|down_0|NC_017278.1_257447_258431_-	cd09722, Cas1_I-B, CRISPR/Cas system-associated protein Cas1	cas3|746aa|down_1|NC_017278.1_258920_261158_-	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	cas6|241aa|down_2|NC_017278.1_261200_261923_+	cd09652, Cas6-I-III, CRISPR/Cas system-associated RAMP superfamily protein Cas6	cas8b1|624aa|down_3|NC_017278.1_261919_263791_+	pfam09484, Cas_TM1802, CRISPR-associated protein TM1802 (cas_TM1802)	cas7|320aa|down_4|NC_017278.1_263780_264740_+	cd09690, Cas7_I-B, CRISPR/Cas system-associated RAMP superfamily protein Cas7	cas5|232aa|down_5|NC_017278.1_264757_265453_+	cd09692, Cas5_I-B, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas2|83aa|down_6|NC_017278.1_265468_265717_+	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	NA|407aa|down_7|NC_017278.1_270255_271476_+	pfam00872, Transposase_mut, Transposase, Mutator family	NA|364aa|down_8|NC_017278.1_271714_272806_+	pfam01609, DDE_Tnp_1, Transposase DDE domain	NA|626aa|down_9|NC_017278.1_273177_275055_-	pfam03235, DUF262, Protein of unknown function DUF262
GCF_000236585.1_ASM23658v1	NC_017278	Thermus sp. CCB_US3_UF1, complete genome	3	265902-266882	3,3,3	PILER-CR,CRISPRCasFinder,CRT	no	cmr6gr7,cmr5gr11,cmr4gr7,cmr1gr7,cmr3gr5,cas10,cas1,cas3,cas6,cas8b1,cas7,cas5,cas2	DinG,c2c9_V-U4,cmr6gr7,cmr5gr11,cmr4gr7,cmr1gr7,cmr3gr5,cas10,cas1,cas3,cas6,cas8b1,cas7,cas5,cas2,DEDDh,csm2gr11,csm3gr7,csm4gr5,csm5gr7,csx1,csa3	Type I-B,Type III-B,Type III-A,Type III-C,Type III-D	TTTCAAACCCTTATAGGTACGGTTCAAAG,CTTTGAACCGTACCTATAAGGGTTTGAAAC,CTTTGAACCGTACCTATAAGGGTTTGAAAC	29,30,30	0	0	NA	NA	NA:NA:NA	14,14,14	14	TypeI-B,TypeIII-B,TypeIII-A,TypeIII-C,TypeIII-D	DinG,c2c9_V-U4,cmr6gr7,cmr5gr11,cmr4gr7,cmr1gr7,cmr3gr5,cas10,cas1,cas3,cas6,cas8b1,cas7,cas5,cas2,DEDDh,csm2gr11,csm3gr7,csm4gr5,csm5gr7,csx1,csa3	NA,NA	cmr3gr5|370aa|up_9|NC_017278.1_252907_254017_-	cd09748, Cmr3_III-B, CRISPR/Cas system-associated RAMP superfamily protein Cmr3	cas10|591aa|up_8|NC_017278.1_254006_255779_-	TIGR02577, thermophile-specific_DNA_repair_system, CRISPR-associated protein Cas10/Cmr2, subtype III-B	NA|80aa|up_7|NC_017278.1_255827_256067_-	pfam09670, Cas_Cas02710, CRISPR-associated protein (Cas_Cas02710)	cas1|328aa|up_6|NC_017278.1_257447_258431_-	cd09722, Cas1_I-B, CRISPR/Cas system-associated protein Cas1	cas3|746aa|up_5|NC_017278.1_258920_261158_-	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	cas6|241aa|up_4|NC_017278.1_261200_261923_+	cd09652, Cas6-I-III, CRISPR/Cas system-associated RAMP superfamily protein Cas6	cas8b1|624aa|up_3|NC_017278.1_261919_263791_+	pfam09484, Cas_TM1802, CRISPR-associated protein TM1802 (cas_TM1802)	cas7|320aa|up_2|NC_017278.1_263780_264740_+	cd09690, Cas7_I-B, CRISPR/Cas system-associated RAMP superfamily protein Cas7	cas5|232aa|up_1|NC_017278.1_264757_265453_+	cd09692, Cas5_I-B, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas2|83aa|up_0|NC_017278.1_265468_265717_+	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	NA|407aa|down_0|NC_017278.1_270255_271476_+	pfam00872, Transposase_mut, Transposase, Mutator family	NA|364aa|down_1|NC_017278.1_271714_272806_+	pfam01609, DDE_Tnp_1, Transposase DDE domain	NA|626aa|down_2|NC_017278.1_273177_275055_-	pfam03235, DUF262, Protein of unknown function DUF262	NA|407aa|down_3|NC_017278.1_275017_276238_-	pfam00872, Transposase_mut, Transposase, Mutator family	NA|111aa|down_4|NC_017278.1_276398_276731_-	cd07344, M48_yhfN_like, Peptidase M48 YhfN-like, a novel minigluzincin	NA|973aa|down_5|NC_017278.1_276723_279642_-	TIGR00348, R_protein, type I site-specific deoxyribonuclease, HsdR family	NA|426aa|down_6|NC_017278.1_279638_280916_-	cd17286, RMtype1_S_Lla161ORF747P_TRD1-CR1_like, Type I restriction-modification system specificity (S) subunit TRD-CR, similar to Lactococcus lactis subsp	NA|523aa|down_7|NC_017278.1_280912_282481_-	COG0286, HsdM, Type I restriction-modification system methyltransferase subunit [Defense mechanisms]	NA|251aa|down_8|NC_017278.1_283204_283957_-	pfam05258, DUF721, Protein of unknown function (DUF721)	NA|344aa|down_9|NC_017278.1_283941_284973_-	PRK14079, recF, recombination protein F; Provisional
GCF_000236585.1_ASM23658v1	NC_017278	Thermus sp. CCB_US3_UF1, complete genome	4	268040-269753	4,4,4	CRT,PILER-CR,CRISPRCasFinder	no	cmr6gr7,cmr5gr11,cmr4gr7,cmr1gr7,cmr3gr5,cas10,cas1,cas3,cas6,cas8b1,cas7,cas5,cas2	DinG,c2c9_V-U4,cmr6gr7,cmr5gr11,cmr4gr7,cmr1gr7,cmr3gr5,cas10,cas1,cas3,cas6,cas8b1,cas7,cas5,cas2,DEDDh,csm2gr11,csm3gr7,csm4gr5,csm5gr7,csx1,csa3	Type I-B,Type III-B,Type III-A,Type III-C,Type III-D	NNCTTTGAACCGTACCTATAAGGGTTTGAAAC,GTTTCAAACCCTTATAGGTACGGTTCAAAG,CTTTGAACCGTACCTATAAGGGTTTGAAAC	32,30,30	0	0	NA	NA	NA:NA:NA	25,23,23	25	TypeI-B,TypeIII-B,TypeIII-A,TypeIII-C,TypeIII-D	DinG,c2c9_V-U4,cmr6gr7,cmr5gr11,cmr4gr7,cmr1gr7,cmr3gr5,cas10,cas1,cas3,cas6,cas8b1,cas7,cas5,cas2,DEDDh,csm2gr11,csm3gr7,csm4gr5,csm5gr7,csx1,csa3	NA,NA	cmr3gr5|370aa|up_9|NC_017278.1_252907_254017_-	cd09748, Cmr3_III-B, CRISPR/Cas system-associated RAMP superfamily protein Cmr3	cas10|591aa|up_8|NC_017278.1_254006_255779_-	TIGR02577, thermophile-specific_DNA_repair_system, CRISPR-associated protein Cas10/Cmr2, subtype III-B	NA|80aa|up_7|NC_017278.1_255827_256067_-	pfam09670, Cas_Cas02710, CRISPR-associated protein (Cas_Cas02710)	cas1|328aa|up_6|NC_017278.1_257447_258431_-	cd09722, Cas1_I-B, CRISPR/Cas system-associated protein Cas1	cas3|746aa|up_5|NC_017278.1_258920_261158_-	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	cas6|241aa|up_4|NC_017278.1_261200_261923_+	cd09652, Cas6-I-III, CRISPR/Cas system-associated RAMP superfamily protein Cas6	cas8b1|624aa|up_3|NC_017278.1_261919_263791_+	pfam09484, Cas_TM1802, CRISPR-associated protein TM1802 (cas_TM1802)	cas7|320aa|up_2|NC_017278.1_263780_264740_+	cd09690, Cas7_I-B, CRISPR/Cas system-associated RAMP superfamily protein Cas7	cas5|232aa|up_1|NC_017278.1_264757_265453_+	cd09692, Cas5_I-B, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas2|83aa|up_0|NC_017278.1_265468_265717_+	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	NA|407aa|down_0|NC_017278.1_270255_271476_+	pfam00872, Transposase_mut, Transposase, Mutator family	NA|364aa|down_1|NC_017278.1_271714_272806_+	pfam01609, DDE_Tnp_1, Transposase DDE domain	NA|626aa|down_2|NC_017278.1_273177_275055_-	pfam03235, DUF262, Protein of unknown function DUF262	NA|407aa|down_3|NC_017278.1_275017_276238_-	pfam00872, Transposase_mut, Transposase, Mutator family	NA|111aa|down_4|NC_017278.1_276398_276731_-	cd07344, M48_yhfN_like, Peptidase M48 YhfN-like, a novel minigluzincin	NA|973aa|down_5|NC_017278.1_276723_279642_-	TIGR00348, R_protein, type I site-specific deoxyribonuclease, HsdR family	NA|426aa|down_6|NC_017278.1_279638_280916_-	cd17286, RMtype1_S_Lla161ORF747P_TRD1-CR1_like, Type I restriction-modification system specificity (S) subunit TRD-CR, similar to Lactococcus lactis subsp	NA|523aa|down_7|NC_017278.1_280912_282481_-	COG0286, HsdM, Type I restriction-modification system methyltransferase subunit [Defense mechanisms]	NA|251aa|down_8|NC_017278.1_283204_283957_-	pfam05258, DUF721, Protein of unknown function (DUF721)	NA|344aa|down_9|NC_017278.1_283941_284973_-	PRK14079, recF, recombination protein F; Provisional
GCF_000236585.1_ASM23658v1	NC_017278	Thermus sp. CCB_US3_UF1, complete genome	5	1108124-1109506	5,5,5	PILER-CR,CRISPRCasFinder,CRT	no		DinG,c2c9_V-U4,cmr6gr7,cmr5gr11,cmr4gr7,cmr1gr7,cmr3gr5,cas10,cas1,cas3,cas6,cas8b1,cas7,cas5,cas2,DEDDh,csm2gr11,csm3gr7,csm4gr5,csm5gr7,csx1,csa3	Orphan	GTTGCAAAAGTGGCTTCCCCGCAAGGGGATTGCGAC,GTTGCAAAAGTGGCTTCCCCGCAAGGGGATTGCGAC,GTTGCAAAAGTGGCTTCCCCGCAAGGGGATTGCGAC	36,36,36	0	0	NA	NA	III-A:III-A:III-A	17,18,18	18	Orphan	DinG,c2c9_V-U4,cmr6gr7,cmr5gr11,cmr4gr7,cmr1gr7,cmr3gr5,cas10,cas1,cas3,cas6,cas8b1,cas7,cas5,cas2,DEDDh,csm2gr11,csm3gr7,csm4gr5,csm5gr7,csx1,csa3	NA,NA	NA|347aa|up_9|NC_017278.1_1096895_1097936_+	TIGR03181, PDH_E1_alph_x, pyruvate dehydrogenase E1 component, alpha subunit	NA|332aa|up_8|NC_017278.1_1097929_1098925_+	COG0022, AcoB, Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, beta subunit [Energy production and conversion]	NA|212aa|up_7|NC_017278.1_1099085_1099721_+	cd04584, CBS_pair_AcuB_like, Two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the ACT domain	NA|425aa|up_6|NC_017278.1_1099761_1101036_+	PRK00062, PRK00062, glutamate-1-semialdehyde 2,1-aminomutase	NA|435aa|up_5|NC_017278.1_1101035_1102340_+	PRK05291, trmE, tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE	NA|381aa|up_4|NC_017278.1_1102340_1103483_-	TIGR01392, Homoserine_O-acetyltransferase, homoserine O-acetyltransferase	NA|422aa|up_3|NC_017278.1_1103479_1104745_-	TIGR01326, Includes:_O-acetylhomoserine_sulfhydrylase, OAH/OAS sulfhydrylase	NA|497aa|up_2|NC_017278.1_1105236_1106727_+	COG1283, NptA, Na+/phosphate symporter [Inorganic ion transport and metabolism]	NA|186aa|up_1|NC_017278.1_1106695_1107253_+	pfam03602, Cons_hypoth95, Conserved hypothetical protein 95	NA|160aa|up_0|NC_017278.1_1107253_1107733_+	PRK00168, coaD, phosphopantetheine adenylyltransferase; Provisional	NA|531aa|down_0|NC_017278.1_1109575_1111168_+	cd07131, ALDH_AldH-CAJ73105, Uncharacterized Candidatus kuenenia aldehyde dehydrogenase AldH (CAJ73105)-like	NA|244aa|down_1|NC_017278.1_1111136_1111868_-	PTZ00016, PTZ00016, aquaglyceroporin; Provisional	NA|607aa|down_2|NC_017278.1_1111851_1113672_-	PRK05443, PRK05443, polyphosphate kinase; Provisional	NA|509aa|down_3|NC_017278.1_1113672_1115199_+	COG0248, GppA, Exopolyphosphatase [Nucleotide transport and metabolism / Inorganic ion transport and metabolism]	NA|166aa|down_4|NC_017278.1_1115206_1115704_+	COG2062, SixA, Phosphohistidine phosphatase SixA [Signal transduction mechanisms]	NA|228aa|down_5|NC_017278.1_1115700_1116384_+	smart00880, CHAD, The CHAD domain is an alpha-helical domain functionally associated with some members of the adenylate cyclase family	NA|594aa|down_6|NC_017278.1_1116390_1118172_-	COG3408, GDB1, Glycogen debranching enzyme [Carbohydrate transport and metabolism]	NA|455aa|down_7|NC_017278.1_1118175_1119540_-	COG0395, UgpE, ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism]	NA|368aa|down_8|NC_017278.1_1119530_1120634_-	COG1175, UgpA, ABC-type sugar transport systems, permease components [Carbohydrate transport and metabolism]	NA|412aa|down_9|NC_017278.1_1120681_1121917_-	cd14748, PBP2_UgpB, The periplasmic-binding component of ABC transport system specific for sn-glycerol-3-phosphate; possesses type 2 periplasmic binding fold
GCF_000236585.1_ASM23658v1	NC_017278	Thermus sp. CCB_US3_UF1, complete genome	6	1331327-1332116	6,6,6	CRT,CRISPRCasFinder,PILER-CR	no	cas6,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,csx1,cas2,cas1	DinG,c2c9_V-U4,cmr6gr7,cmr5gr11,cmr4gr7,cmr1gr7,cmr3gr5,cas10,cas1,cas3,cas6,cas8b1,cas7,cas5,cas2,DEDDh,csm2gr11,csm3gr7,csm4gr5,csm5gr7,csx1,csa3	Type III-C,Type III-D,Type III-B,Type III-A	GCAATCCCCTTACGGGGAAGCCACTTTTGCAAC,GTCGCAATCCCCTTACGGGGAAGCCACTTTTGCAAC,GTTGCAAAAGTGGCTTCCCCGTAAGGGGATTGCGAC	33,36,36	0	0	NA	NA	III-A:III-A:III-A	10,9,8	10	TypeIII-C,TypeIII-D,TypeIII-B,TypeIII-A	DinG,c2c9_V-U4,cmr6gr7,cmr5gr11,cmr4gr7,cmr1gr7,cmr3gr5,cas10,cas1,cas3,cas6,cas8b1,cas7,cas5,cas2,DEDDh,csm2gr11,csm3gr7,csm4gr5,csm5gr7,csx1,csa3	NA,NA	NA|419aa|up_9|NC_017278.1_1319805_1321062_+	COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]	NA|619aa|up_8|NC_017278.1_1321125_1322982_+	pfam13520, AA_permease_2, Amino acid permease	cas6|238aa|up_7|NC_017278.1_1322993_1323707_-	TIGR01877, CRISPR-associated_endoribonuclease_Cas6_1, CRISPR-associated endoribonuclease Cas6	cas10|810aa|up_6|NC_017278.1_1323785_1326215_+	cd09680, Cas10_III, CRISPR/Cas system-associated protein Cas10	csm2gr11|135aa|up_5|NC_017278.1_1326215_1326620_+	cd09647, Csm2_III-A, CRISPR/Cas system-associated protein Csm2	csm3gr7|247aa|up_4|NC_017278.1_1326631_1327372_+	cd09684, Csm3_III-A, CRISPR/Cas system-associated RAMP superfamily protein Csm3	csm4gr5|289aa|up_3|NC_017278.1_1327361_1328228_+	TIGR01903, Hypothetical_protein	csm5gr7|376aa|up_2|NC_017278.1_1328224_1329352_+	cd09662, Csm5_III-A, CRISPR/Cas system-associated RAMP superfamily protein Csm5	csx1|383aa|up_1|NC_017278.1_1329354_1330503_+	pfam09455, Cas_DxTHG, CRISPR-associated (Cas) DxTHG family	cas2|90aa|up_0|NC_017278.1_1330499_1330769_-	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	cas1|316aa|down_0|NC_017278.1_1332474_1333422_-	cd09634, Cas1_I-II-III, CRISPR/Cas system-associated protein Cas1	csx1|402aa|down_1|NC_017278.1_1333421_1334627_-	TIGR02710, conserved_hypothetical_protein, CRISPR-associated protein, TIGR02710 family	NA|336aa|down_2|NC_017278.1_1334688_1335696_+	COG0079, HisC, Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase [Amino acid transport and metabolism]	NA|502aa|down_3|NC_017278.1_1335730_1337236_-	COG1785, PhoA, Alkaline phosphatase [Inorganic ion transport and metabolism]	NA|261aa|down_4|NC_017278.1_1337283_1338066_-	PRK06427, PRK06427, bifunctional hydroxy-methylpyrimidine kinase/ hydroxy-phosphomethylpyrimidine kinase; Reviewed	NA|435aa|down_5|NC_017278.1_1338076_1339381_-	PRK13352, PRK13352, phosphomethylpyrimidine synthase ThiC	NA|310aa|down_6|NC_017278.1_1339377_1340307_-	TIGR02352, Glycine_oxidase, glycine oxidase ThiO	NA|261aa|down_7|NC_017278.1_1340303_1341086_-	PRK00208, thiG, thiazole synthase; Reviewed	NA|65aa|down_8|NC_017278.1_1341086_1341281_-	cd00565, Ubl_ThiS, ubiquitin-like (Ubl) domain found in sulfur carrier protein ThiS	NA|207aa|down_9|NC_017278.1_1341267_1341888_-	PRK00043, thiE, thiamine phosphate synthase
GCF_000236585.1_ASM23658v1	NC_017278	Thermus sp. CCB_US3_UF1, complete genome	7	1414650-1415585	7,7,7	CRISPRCasFinder,CRT,PILER-CR	no		DinG,c2c9_V-U4,cmr6gr7,cmr5gr11,cmr4gr7,cmr1gr7,cmr3gr5,cas10,cas1,cas3,cas6,cas8b1,cas7,cas5,cas2,DEDDh,csm2gr11,csm3gr7,csm4gr5,csm5gr7,csx1,csa3	Orphan	GTCGCAATCCCCTTACGGGGAAGCCACTTTTGCAAC,GTCGCAATCCCCTTACGGGGAAGCCACTTTTGCAAC,GTTGCAAAAGTGGCTTCCCCGTAAGGGGATTGCGAC	36,36,36	0	0	NA	NA	III-A:III-A:III-A	12,12,11	12	Orphan	DinG,c2c9_V-U4,cmr6gr7,cmr5gr11,cmr4gr7,cmr1gr7,cmr3gr5,cas10,cas1,cas3,cas6,cas8b1,cas7,cas5,cas2,DEDDh,csm2gr11,csm3gr7,csm4gr5,csm5gr7,csx1,csa3	NA,NA	NA|259aa|up_9|NC_017278.1_1405502_1406279_+	cd03224, ABC_TM1139_LivF_branched, ATP-binding cassette domain of branched-chain amino acid transporter	NA|250aa|up_8|NC_017278.1_1406289_1407039_+	cd03219, ABC_Mj1267_LivG_branched, ATP-binding cassette component of branched chain amino acids transport system	NA|618aa|up_7|NC_017278.1_1407045_1408899_+	cd17641, LC_FACS_bac1, bacterial long-chain fatty acid CoA synthetase	NA|356aa|up_6|NC_017278.1_1408900_1409968_+	cd06581, TM_PBP1_LivM_like, Transmembrane subunit (TM) of Escherichia coli LivM and related proteins	NA|181aa|up_5|NC_017278.1_1409964_1410507_-	pfam02660, G3P_acyltransf, Glycerol-3-phosphate acyltransferase	NA|136aa|up_4|NC_017278.1_1410506_1410914_-	pfam02657, SufE, Fe-S metabolism associated domain	NA|231aa|up_3|NC_017278.1_1410923_1411616_-	PRK07326, PRK07326, SDR family oxidoreductase	NA|202aa|up_2|NC_017278.1_1411620_1412226_-	pfam01121, CoaE, Dephospho-CoA kinase	NA|432aa|up_1|NC_017278.1_1412205_1413501_+	TIGR02692, putative_tRNA_nucleotidyltransferase, tRNA adenylyltransferase	NA|327aa|up_0|NC_017278.1_1413607_1414588_+	pfam01875, Memo, Memo-like protein	NA|754aa|down_0|NC_017278.1_1416005_1418267_-	TIGR02063, Ribonuclease_R, ribonuclease R	NA|415aa|down_1|NC_017278.1_1418268_1419513_-	COG4992, ArgD, Ornithine/acetylornithine aminotransferase [Amino acid transport and metabolism]	NA|133aa|down_2|NC_017278.1_1419517_1419916_-	COG0824, FcbC, Predicted thioesterase [General function prediction only]	NA|92aa|down_3|NC_017278.1_1419903_1420179_-	COG0858, RbfA, Ribosome-binding factor A [Translation, ribosomal structure and biogenesis]	NA|434aa|down_4|NC_017278.1_1420188_1421490_-	PRK14323, glmM, phosphoglucosamine mutase; Provisional	NA|834aa|down_5|NC_017278.1_1421514_1424016_-	TIGR00593, DNA_polymerase_I, DNA polymerase I	NA|191aa|down_6|NC_017278.1_1424019_1424592_-	COG1739, COG1739, Uncharacterized conserved protein [Function unknown]	NA|265aa|down_7|NC_017278.1_1424595_1425390_-	COG0169, AroE, Shikimate 5-dehydrogenase [Amino acid transport and metabolism]	NA|423aa|down_8|NC_017278.1_1425443_1426712_+	COG1030, NfeD, Membrane-bound serine protease (ClpP class) [Posttranslational modification, protein turnover, chaperones]	NA|326aa|down_9|NC_017278.1_1426714_1427692_+	PRK13665, PRK13665, hypothetical protein; Provisional
GCF_000236585.1_ASM23658v1	NC_017278	Thermus sp. CCB_US3_UF1, complete genome	8	1697604-1697751	8,8	PILER-CR,CRISPRCasFinder	no		DinG,c2c9_V-U4,cmr6gr7,cmr5gr11,cmr4gr7,cmr1gr7,cmr3gr5,cas10,cas1,cas3,cas6,cas8b1,cas7,cas5,cas2,DEDDh,csm2gr11,csm3gr7,csm4gr5,csm5gr7,csx1,csa3	Orphan	CGTAGTCCCCACACGCGTGGGGATGGA,GTAGTCCCCACACGCGTGGGGATGGA	27,26	0	0	NA	NA	I-E,II-B:I-E,II-B	2,2	2	Orphan	DinG,c2c9_V-U4,cmr6gr7,cmr5gr11,cmr4gr7,cmr1gr7,cmr3gr5,cas10,cas1,cas3,cas6,cas8b1,cas7,cas5,cas2,DEDDh,csm2gr11,csm3gr7,csm4gr5,csm5gr7,csx1,csa3	NA|147aa|up_2|NC_017278.1_1695528_1695969_+,NA|238aa|down_0|NC_017278.1_1697765_1698479_-	NA|81aa|up_9|NC_017278.1_1689032_1689275_+	pfam01809, Haemolytic, Haemolytic domain	NA|431aa|up_8|NC_017278.1_1689271_1690564_+	TIGR03592, yidC_oxa1_cterm, membrane protein insertase, YidC/Oxa1 family, C-terminal domain	NA|196aa|up_7|NC_017278.1_1690573_1691161_+	COG1847, Jag, Predicted RNA-binding protein [General function prediction only]	NA|273aa|up_6|NC_017278.1_1691123_1691942_+	PRK09328, PRK09328, N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional	NA|469aa|up_5|NC_017278.1_1691888_1693295_-	pfam11283, DUF3084, Protein of unknown function (DUF3084)	NA|243aa|up_4|NC_017278.1_1693295_1694024_-	cd03218, ABC_YhbG, ATP-binding cassette component of YhbG transport system	NA|472aa|up_3|NC_017278.1_1694078_1695494_+	PRK01406, gltX, glutamyl-tRNA synthetase; Reviewed	NA|147aa|up_2|NC_017278.1_1695528_1695969_+	NA	NA|305aa|up_1|NC_017278.1_1695968_1696883_+	PRK10416, PRK10416, signal recognition particle-docking protein FtsY; Provisional	NA|136aa|up_0|NC_017278.1_1697056_1697464_+	PRK03113, PRK03113, putative disulfide oxidoreductase; Provisional	NA|238aa|down_0|NC_017278.1_1697765_1698479_-	NA	NA|696aa|down_1|NC_017278.1_1698489_1700577_-	TIGR01073, ATP-dependent_DNA_helicase_PcrA, ATP-dependent DNA helicase PcrA	NA|298aa|down_2|NC_017278.1_1700638_1701532_+	cd05800, PGM_like2, This PGM-like (phosphoglucomutase-like) protein of unknown function belongs to the alpha-D-phosphohexomutase superfamily and is found in both archaea and bacteria	NA|318aa|down_3|NC_017278.1_1701528_1702482_+	cd07725, TTHA1429-like_MBL-fold, uncharacterized Thermus thermophilus TTHA1429 and related proteins; MBL-fold metallo hydrolase domain	NA|549aa|down_4|NC_017278.1_1702540_1704187_+	cd05936, FC-FACS_FadD_like, Prokaryotic long-chain fatty acid CoA synthetases similar to Escherichia coli FadD	NA|145aa|down_5|NC_017278.1_1704284_1704719_+	pfam10025, DUF2267, Uncharacterized conserved protein (DUF2267)	NA|291aa|down_6|NC_017278.1_1704715_1705588_-	COG3294, COG3294, HD supefamily hydrolase [General function prediction only]	NA|272aa|down_7|NC_017278.1_1705656_1706472_-	PRK05809, PRK05809, short-chain-enoyl-CoA hydratase	NA|236aa|down_8|NC_017278.1_1706475_1707183_-	cd17765, PNP_ThPNP_like, purine nucleoside phosphorylases similar to Thermus thermophiles PNP	NA|210aa|down_9|NC_017278.1_1707208_1707838_-	cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein
