The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NC_016641	Paenibacillus terrae HPL-003, complete sequence	6083395	2542505	2554165	6083395		Mollivirus(25.0%)	10	NA	NA
WP_014279839.1|2542505_2543804_+	adenylosuccinate lyase	NA	A0A1B3B081	Gordonia_phage	33.1	1.6e-19
WP_014279840.1|2544581_2545463_+	phosphoribosylaminoimidazolesuccinocarboxamide synthase	NA	A0A0M4JBD3	Mollivirus	35.0	1.3e-41
WP_014279841.1|2545521_2545767_+	phosphoribosylformylglycinamidine synthase subunit PurS	NA	A0A0E3FJ99	Synechococcus_phage	37.7	1.4e-06
WP_014279842.1|2545771_2546461_+	phosphoribosylformylglycinamidine synthase subunit PurQ	NA	NA	NA	NA	NA
WP_014279843.1|2546438_2548682_+	phosphoribosylformylglycinamidine synthase subunit PurL	NA	A6N228	Microbacterium_phage	42.4	4.3e-166
WP_014279844.1|2548666_2550148_+	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	31.6	1.8e-51
WP_148267388.1|2550430_2550718_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014279847.1|2550856_2551897_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	45.8	5.9e-70
WP_014279848.1|2551896_2552511_+	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	36.4	4.6e-22
WP_014279849.1|2552617_2554165_+	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	NA	Q58MG4	Prochlorococcus_phage	51.9	4.5e-74
>prophage 2
NC_016641	Paenibacillus terrae HPL-003, complete sequence	6083395	2590696	2608235	6083395	terminase,integrase,transposase	Bacillus_phage(28.57%)	16	2603311:2603325	2610649:2610663
WP_081473710.1|2590696_2590801_-|transposase	IS3 family transposase	transposase	NA	NA	NA	NA
WP_081473711.1|2590797_2591136_-|integrase,transposase	DDE-type integrase/transposase/recombinase	integrase,transposase	Q716C2	Shigella_phage	39.4	3.2e-09
WP_014279890.1|2591083_2591578_-|transposase	IS3 family transposase	transposase	A0A1B1P773	Bacillus_phage	35.5	2.5e-10
WP_043922377.1|2591586_2591835_-|transposase	transposase	transposase	NA	NA	NA	NA
WP_014279892.1|2592335_2594045_+	DNA cytosine methyltransferase	NA	M1PSQ0	Streptococcus_phage	30.7	7.3e-25
WP_014279893.1|2594224_2595700_+	ATP-binding protein	NA	NA	NA	NA	NA
WP_014279894.1|2595692_2598332_+	Z1 domain-containing protein	NA	NA	NA	NA	NA
WP_014279895.1|2598356_2599367_+	PD-(D/E)XK motif protein	NA	NA	NA	NA	NA
WP_014279896.1|2599382_2601224_+	AIPR family protein	NA	NA	NA	NA	NA
WP_014279897.1|2601427_2601724_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014279898.1|2601766_2602447_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014279899.1|2603243_2604509_+	ParB N-terminal domain-containing protein	NA	A0A2I4R670	Erysipelothrix_phage	49.9	2.4e-110
2603311:2603325	attL	AAGCTGTAGATTATG	NA	NA	NA	NA
WP_014279900.1|2604529_2604691_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014279901.1|2604760_2605504_+	hypothetical protein	NA	A0A2H4JAE2	uncultured_Caudovirales_phage	37.9	9.8e-19
WP_014279902.1|2605663_2606509_+|integrase	tyrosine-type recombinase/integrase	integrase	A0A1B1IQT7	uncultured_Mediterranean_phage	27.5	1.7e-11
WP_014279903.1|2606684_2608235_+|terminase	phage terminase large subunit	terminase	A0A0N7AEF1	Bacillus_phage	33.1	6.5e-73
2610649:2610663	attR	CATAATCTACAGCTT	NA	NA	NA	NA
>prophage 3
NC_016641	Paenibacillus terrae HPL-003, complete sequence	6083395	2954895	2966665	6083395	plate,tail	Bacillus_phage(50.0%)	13	NA	NA
WP_014280216.1|2954895_2955303_+|tail	phage tail tube protein	tail	A0A2H4J032	uncultured_Caudovirales_phage	61.8	1.1e-40
WP_014280217.1|2955377_2955812_+	hypothetical protein	NA	A0A2H4J883	uncultured_Caudovirales_phage	42.0	2.3e-20
WP_043922392.1|2955988_2958019_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014280220.1|2958055_2958697_+	LysM peptidoglycan-binding domain-containing protein	NA	A0A0N7ACF7	Bacillus_phage	51.6	1.3e-43
WP_014280221.1|2958693_2959671_+	hypothetical protein	NA	A0A0N6W8H4	Bacillus_phage	48.0	8.5e-79
WP_014280222.1|2959663_2960071_+	hypothetical protein	NA	A0A0N7ACD3	Bacillus_phage	33.1	2.3e-09
WP_014280223.1|2960063_2960522_+	DUF2634 domain-containing protein	NA	A0A0N7ACH4	Bacillus_phage	42.1	7.4e-25
WP_014280224.1|2960521_2961673_+|plate	baseplate J/gp47 family protein	plate	S6AVU3	Thermus_phage	34.4	1.9e-40
WP_043922685.1|2961719_2962289_+	YmfQ family protein	NA	A0A0A7RTU9	Clostridium_phage	43.2	2.0e-27
WP_014280226.1|2962290_2964852_+	hypothetical protein	NA	R4JDZ8	Bacillus_phage	32.9	1.3e-25
WP_014280227.1|2964864_2965335_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014280228.1|2965398_2965665_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014280230.1|2965828_2966665_+	YmfQ family protein	NA	S6BFJ0	Thermus_phage	41.9	1.3e-24
>prophage 4
NC_016641	Paenibacillus terrae HPL-003, complete sequence	6083395	3196225	3231518	6083395		Brevibacillus_phage(88.0%)	28	NA	NA
WP_014280452.1|3196225_3196924_+	queuosine precursor transporter	NA	A0A2H4J2N7	uncultured_Caudovirales_phage	30.8	6.0e-10
WP_014280453.1|3197058_3197316_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014280454.1|3197443_3198496_+	hypothetical protein	NA	A0A0K2CNX7	Brevibacillus_phage	73.3	2.5e-140
WP_014280455.1|3198518_3198953_+	hypothetical protein	NA	A0A0K2CPC8	Brevibacillus_phage	65.0	2.6e-48
WP_014280456.1|3199078_3199297_+	hypothetical protein	NA	A0A0K2CP74	Brevibacillus_phage	46.5	1.9e-10
WP_014280457.1|3199362_3200154_+	hypothetical protein	NA	A0A0K2CPN3	Brevibacillus_phage	44.5	1.8e-23
WP_014280458.1|3200210_3200828_+	S-layer homology domain-containing protein	NA	A0A0K2CPJ2	Brevibacillus_phage	67.5	4.5e-78
WP_014280459.1|3200829_3201879_+	hypothetical protein	NA	A0A0K2CP35	Brevibacillus_phage	48.1	4.7e-99
WP_014280460.1|3201890_3205379_+	peptidoglycan DD-metalloendopeptidase family protein	NA	A0A0K2CNY2	Brevibacillus_phage	55.2	0.0e+00
WP_014280461.1|3205495_3205915_+	hypothetical protein	NA	A0A0K2CP80	Brevibacillus_phage	56.1	8.5e-36
WP_014280462.1|3205918_3206305_+	hypothetical protein	NA	A0A0K2CPN7	Brevibacillus_phage	68.8	1.9e-50
WP_014280463.1|3206322_3208641_+	hypothetical protein	NA	A0A0K2CPJ7	Brevibacillus_phage	52.0	3.9e-239
WP_014280464.1|3208802_3210536_+	hypothetical protein	NA	A0A0K2CP42	Brevibacillus_phage	66.9	6.3e-194
WP_014280465.1|3210659_3212495_+	hypothetical protein	NA	A0A0K2CNY7	Brevibacillus_phage	69.9	2.8e-256
WP_014280466.1|3212525_3216086_+	hypothetical protein	NA	A0A0K2CP84	Brevibacillus_phage	24.0	5.0e-28
WP_193372613.1|3216100_3217186_+	cell adhesion protein	NA	A0A0K2CPP1	Brevibacillus_phage	63.1	3.3e-140
WP_014280468.1|3217200_3218034_+	hypothetical protein	NA	A0A0K2CPK2	Brevibacillus_phage	55.2	1.1e-79
WP_014280469.1|3218189_3219410_+	hypothetical protein	NA	A0A0K2CP47	Brevibacillus_phage	68.8	5.2e-09
WP_014280470.1|3219677_3220172_+	hypothetical protein	NA	G3MAA2	Bacillus_virus	52.4	2.2e-38
WP_014280471.1|3220208_3220826_+	hypothetical protein	NA	A0A0K2CP89	Brevibacillus_phage	52.0	1.3e-53
WP_014280472.1|3220810_3223591_+	hypothetical protein	NA	A0A127AW61	Bacillus_phage	34.8	2.2e-15
WP_014280473.1|3223627_3227632_+	LamG domain-containing protein	NA	A0A0K2CP88	Brevibacillus_phage	26.9	9.0e-42
WP_043922402.1|3227845_3228031_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014280474.1|3228588_3229125_+	sigma-70 family RNA polymerase sigma factor	NA	A0A0K2CPD2	Brevibacillus_phage	52.1	1.7e-41
WP_014280475.1|3229293_3229758_+	hypothetical protein	NA	A0A0K2CPR2	Brevibacillus_phage	49.3	7.0e-39
WP_014280476.1|3229789_3230107_+	hypothetical protein	NA	A0A0K2CPQ6	Brevibacillus_phage	59.6	5.4e-35
WP_014280477.1|3230124_3230472_+	hypothetical protein	NA	NA	NA	NA	NA
WP_148267394.1|3230468_3231518_+	sigma-70 family RNA polymerase sigma factor	NA	A0A0K2CPD8	Brevibacillus_phage	56.1	4.8e-96
>prophage 5
NC_016641	Paenibacillus terrae HPL-003, complete sequence	6083395	3485095	3494471	6083395		Bacillus_phage(50.0%)	7	NA	NA
WP_014280712.1|3485095_3485965_+	SDR family oxidoreductase	NA	A0A2N9QUX2	Trichoplusia_ni_ascovirus	41.1	6.0e-52
WP_014280713.1|3486109_3487912_+	HAMP domain-containing protein	NA	W8CYF6	Bacillus_phage	36.5	2.1e-38
WP_014280714.1|3488040_3488772_+	response regulator transcription factor	NA	W8CYM9	Bacillus_phage	34.9	1.3e-36
WP_014280715.1|3488930_3490055_+	CBS domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	35.4	2.2e-06
WP_014280716.1|3490182_3490941_+	phosphate ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	32.9	5.2e-15
WP_014280717.1|3490980_3491640_+	phosphate signaling complex protein PhoU	NA	NA	NA	NA	NA
WP_014280718.1|3491816_3494471_+	DNA polymerase I	NA	A0A060AM05	Listeria_phage	28.9	4.7e-47
>prophage 6
NC_016641	Paenibacillus terrae HPL-003, complete sequence	6083395	3779583	3792284	6083395	holin,transposase	Paenibacillus_phage(60.0%)	20	NA	NA
WP_014280979.1|3779583_3780168_+	hypothetical protein	NA	R9TPZ8	Paenibacillus_phage	32.5	9.1e-12
WP_014280980.1|3780188_3780455_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014280981.1|3780593_3781331_+	hypothetical protein	NA	D2XR29	Bacillus_phage	37.4	4.1e-33
WP_014280982.1|3781420_3781567_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014280983.1|3781730_3782141_+	Bro-N domain-containing protein	NA	A0A0K2CNG8	Brevibacillus_phage	56.9	9.8e-37
WP_014280985.1|3783019_3783343_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014280986.1|3783381_3783942_-	hypothetical protein	NA	D0R7H9	Paenibacillus_phage	79.0	2.8e-66
WP_014280987.1|3783944_3784940_-	glycoside hydrolase	NA	D0R7H8	Paenibacillus_phage	84.2	1.4e-129
WP_014280988.1|3784917_3785364_-|holin	phage holin family protein	holin	D0R7H7	Paenibacillus_phage	82.7	7.3e-62
WP_014280989.1|3785436_3785658_-	hypothetical protein	NA	NA	NA	NA	NA
WP_081473727.1|3785697_3786096_-	phage antirepressor KilAC domain-containing protein	NA	A0A2D1GQ65	Lysinibacillus_phage	68.4	1.1e-40
WP_014280993.1|3786917_3787172_-	hypothetical protein	NA	NA	NA	NA	NA
WP_043922428.1|3787647_3788544_+	hypothetical protein	NA	A0A0K2CYL7	Paenibacillus_phage	39.1	3.2e-48
WP_014280995.1|3788564_3788957_+	hypothetical protein	NA	R9W0N7	Paenibacillus_phage	68.4	3.6e-44
WP_014280996.1|3788971_3789349_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014280997.1|3789499_3789808_+	DUF2500 family protein	NA	NA	NA	NA	NA
WP_014280998.1|3789957_3790278_+	DUF2500 family protein	NA	NA	NA	NA	NA
WP_014280999.1|3790391_3790604_+	hypothetical protein	NA	NA	NA	NA	NA
WP_148267402.1|3790686_3790986_+	DUF2500 family protein	NA	NA	NA	NA	NA
WP_014281001.1|3791063_3792284_+|transposase	IS256 family transposase	transposase	A0A218MNI5	uncultured_virus	52.9	2.2e-55
>prophage 7
NC_016641	Paenibacillus terrae HPL-003, complete sequence	6083395	5681271	5738166	6083395	protease,integrase,transposase	Bacillus_virus(21.43%)	54	5691340:5691356	5736798:5736814
WP_014282627.1|5681271_5681646_-|protease	clan AA aspartic protease	protease	A0A0A8WIU2	Clostridium_phage	32.8	3.8e-11
WP_014282628.1|5681646_5681889_-	hypothetical protein	NA	A0A0A8WF72	Clostridium_phage	42.0	4.2e-11
WP_014282629.1|5682171_5682957_-	phosphotransferase	NA	NA	NA	NA	NA
WP_014282630.1|5683151_5684258_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010345194.1|5684455_5684659_-	helix-turn-helix transcriptional regulator	NA	A0A0C5ABM0	Bacteriophage	50.0	1.6e-11
WP_014282631.1|5684830_5685118_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014282632.1|5685343_5686087_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014282633.1|5686947_5687874_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014282634.1|5688152_5688392_-	hypothetical protein	NA	NA	NA	NA	NA
WP_148267433.1|5688520_5689283_+|transposase	IS5 family transposase	transposase	A0A0N9SHJ4	Paenibacillus_phage	71.8	2.0e-46
WP_014282637.1|5689280_5689679_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014282638.1|5689848_5690070_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_014282639.1|5690223_5690514_+	hypothetical protein	NA	NA	NA	NA	NA
WP_148267434.1|5691036_5691870_-	hypothetical protein	NA	NA	NA	NA	NA
5691340:5691356	attL	AATCTTTTTATGAATTT	NA	NA	NA	NA
WP_014282642.1|5692011_5693151_-|integrase	tyrosine-type recombinase/integrase	integrase	S5W9T9	Leptospira_phage	33.6	4.7e-36
WP_014282643.1|5693459_5693843_-	immunity 22 family protein	NA	NA	NA	NA	NA
WP_014282644.1|5693990_5696063_-	methyl-accepting chemotaxis protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	32.5	8.6e-12
WP_014282645.1|5696479_5697478_-	iron-siderophore ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_014279141.1|5697793_5698933_+|transposase	IS4 family transposase	transposase	NA	NA	NA	NA
WP_014282646.1|5699023_5700220_+	tetracycline resistance MFS efflux pump	NA	NA	NA	NA	NA
WP_014282647.1|5700216_5700861_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014282648.1|5700968_5701508_-	CueP family metal-binding protein	NA	NA	NA	NA	NA
WP_014282649.1|5701715_5702261_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_014282650.1|5702569_5703229_-	DUF1989 domain-containing protein	NA	NA	NA	NA	NA
WP_014282651.1|5703262_5703979_-	urea carboxylase-associated family protein	NA	NA	NA	NA	NA
WP_014282652.1|5704544_5706281_+	allophanate hydrolase	NA	NA	NA	NA	NA
WP_014282653.1|5706319_5707948_+	PucR family transcriptional regulator	NA	NA	NA	NA	NA
WP_043922926.1|5708054_5708786_+	ABC transporter permease	NA	G3M9Y4	Bacillus_virus	34.5	2.5e-35
WP_014282655.1|5708818_5709619_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	37.6	3.4e-33
WP_014282656.1|5709605_5710979_+	MATE family efflux transporter	NA	NA	NA	NA	NA
WP_014282657.1|5711040_5712105_+	ABC transporter substrate-binding protein	NA	G3M9Z0	Bacillus_virus	32.9	1.6e-09
WP_014282658.1|5712147_5712717_+	cysteine hydrolase	NA	NA	NA	NA	NA
WP_014282659.1|5712745_5713315_+	cysteine hydrolase	NA	NA	NA	NA	NA
WP_043922928.1|5713412_5714771_-	amidohydrolase	NA	NA	NA	NA	NA
WP_014282661.1|5714923_5716285_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014282662.1|5716397_5716967_+	DUF1697 domain-containing protein	NA	NA	NA	NA	NA
WP_014282663.1|5717166_5718912_-	methyl-accepting chemotaxis protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	50.0	2.2e-08
WP_014282664.1|5719254_5721648_-	polyprenyl synthetase family protein	NA	A0A1V0SE37	Indivirus	28.2	1.2e-09
WP_014282665.1|5721911_5722481_+	TerD family protein	NA	S5M8H7	Bacillus_phage	32.3	7.5e-19
WP_014282667.1|5723219_5724158_-	ADP-ribosylglycohydrolase family protein	NA	A0A1S6UB21	Serratia_phage	47.2	2.5e-67
WP_014282668.1|5724243_5725329_-	hypothetical protein	NA	NA	NA	NA	NA
WP_043922931.1|5725664_5726186_+	serine hydrolase family protein	NA	NA	NA	NA	NA
WP_014282671.1|5726718_5727726_-	phosphotransferase	NA	NA	NA	NA	NA
WP_014282672.1|5728009_5729311_-	MFS transporter	NA	NA	NA	NA	NA
WP_014282673.1|5729307_5729856_-|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_014282674.1|5730195_5730450_-	PqqD family protein	NA	NA	NA	NA	NA
WP_014282675.1|5730446_5731292_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014282676.1|5731591_5732167_-	histidine phosphatase family protein	NA	NA	NA	NA	NA
WP_014282677.1|5732212_5732917_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_014282678.1|5733270_5734677_-	aspartate aminotransferase family protein	NA	NA	NA	NA	NA
WP_081473766.1|5734694_5735750_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014282680.1|5735954_5736632_-	hypothetical protein	NA	NA	NA	NA	NA
WP_148267460.1|5736656_5737343_-	CYTH domain-containing protein	NA	NA	NA	NA	NA
5736798:5736814	attR	AAATTCATAAAAAGATT	NA	NA	NA	NA
WP_081473767.1|5737974_5738166_-|transposase	transposase	transposase	A0A0N9SHJ4	Paenibacillus_phage	62.3	8.6e-12
