assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000234725.1_ASM23472v1	NC_016804	Mycobacterium tuberculosis variant bovis BCG str. Mexico, complete sequence	1	693244-693320	1	CRISPRCasFinder	no	c2c9_V-U4	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Type V-U4	TGAGGTGCGGCGTGAGCGCGGGT	23	0	0	NA	NA	NA	1	1	TypeV-U4	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA,NA	NA|136aa|up_9|NC_016804.1_679137_679545_+	cd18696, PIN_MtVapC26-like, VapC-like PIN domain of Mycobacterium tuberculosis VapC26 and related proteins	NA|229aa|up_8|NC_016804.1_679604_680291_-	pfam10738, Lpp-LpqN, Probable lipoprotein LpqN	NA|878aa|up_7|NC_016804.1_680444_683078_+	COG3537, COG3537, Putative alpha-1,2-mannosidase [Carbohydrate transport and metabolism]	NA|796aa|up_6|NC_016804.1_683100_685488_-	pfam03706, LPG_synthase_TM, Lysylphosphatidylglycerol synthase TM region	NA|241aa|up_5|NC_016804.1_685625_686348_+	COG2186, FadR, Transcriptional regulators [Transcription]	NA|266aa|up_4|NC_016804.1_686344_687142_+	COG0767, Ttg2B, ABC-type transport system involved in resistance to organic solvents, permease component [Secondary metabolites biosynthesis, transport, and catabolism]	NA|296aa|up_3|NC_016804.1_687143_688031_+	COG0767, Ttg2B, ABC-type transport system involved in resistance to organic solvents, permease component [Secondary metabolites biosynthesis, transport, and catabolism]	NA|405aa|up_2|NC_016804.1_688036_689251_+	pfam11887, Mce4_CUP1, Cholesterol uptake porter CUP1 of Mce4, putative	NA|344aa|up_1|NC_016804.1_689247_690279_+	COG1463, Ttg2C, ABC-type transport system involved in resistance to organic solvents, periplasmic component [Secondary metabolites biosynthesis, transport, and catabolism]	NA|482aa|up_0|NC_016804.1_690275_691721_+	TIGR00996, Mtu_fam_mce, virulence factor Mce family protein	NA|517aa|down_0|NC_016804.1_694455_696006_+	COG1463, Ttg2C, ABC-type transport system involved in resistance to organic solvents, periplasmic component [Secondary metabolites biosynthesis, transport, and catabolism]	NA|131aa|down_1|NC_016804.1_696057_696450_-	cd18768, PIN_MtVapC4-C5-like, VapC-like PIN domain of Mycobacterium tuberculosis VapC4, VapC5, and related proteins	NA|86aa|down_2|NC_016804.1_696446_696704_-	COG4118, Phd, Antitoxin of toxin-antitoxin stability system [Cell division and chromosome partitioning]	NA|412aa|down_3|NC_016804.1_696886_698122_-	COG1373, COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only]	NA|138aa|down_4|NC_016804.1_698372_698786_-	cd18681, PIN_MtVapC27-VapC40_like, VapC-like PIN domain of Mycobacterium tuberculosis VapC27, and VapC40, and related proteins	NA|79aa|down_5|NC_016804.1_698782_699019_-	COG2002, AbrB, Regulators of stationary/sporulation gene expression [Transcription]	NA|169aa|down_6|NC_016804.1_699122_699629_-	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|157aa|down_7|NC_016804.1_699742_700213_-	PRK10755, PRK10755, two-component system sensor histidine kinase PmrB	NA|254aa|down_8|NC_016804.1_700256_701018_-	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|104aa|down_9|NC_016804.1_701074_701386_+	pfam03413, PepSY, Peptidase propeptide and YPEB domain
GCF_000234725.1_ASM23472v1	NC_016804	Mycobacterium tuberculosis variant bovis BCG str. Mexico, complete sequence	2	927321-928232	1	CRT	no	csa3	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Type I-A	CGGGGCCGGCGGGGCCGGCGG	21	1	23	928188-928214|928188-928214|928188-928214|928188-928214|928188-928214|928188-928214|928188-928214|928188-928214|928188-928214|928188-928214|928188-928214|928188-928214|928188-928214|928188-928214|928188-928214|928188-928214|928188-928214|928188-928214|928188-928214|928188-928214|928188-928214|928188-928214|928188-928214	NC_016804.1_835248-835274|NC_016804.1_331981-331955|NC_016804.1_334995-334969|NC_016804.1_337941-337915|NC_016804.1_841499-841525|NC_016804.1_842777-842803|NC_016804.1_927054-927080|NC_016804.1_2383063-2383037|NC_016804.1_333217-333191|NC_016804.1_335946-335920|NC_016804.1_336285-336259|NC_016804.1_339060-339034|NC_016804.1_676344-676318|NC_016804.1_838620-838646|NC_016804.1_839718-839744|NC_016804.1_926955-926981|NC_016804.1_1215453-1215479|NC_016804.1_1651068-1651042|NC_016804.1_1840272-1840246|NC_016804.1_2041749-2041723|NC_016804.1_3769333-3769359|NC_016804.1_3899792-3899818|NC_016804.1_3899948-3899974	NA	19	19	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA,NA|184aa|down_2|NC_016804.1_932350_932902_-,NA|81aa|down_8|NC_016804.1_938377_938620_+	NA|685aa|up_9|NC_016804.1_914956_917011_-	TIGR00350, Transcriptional_regulator_LytR, cell envelope-related function transcriptional attenuator common domain	NA|390aa|up_8|NC_016804.1_917176_918346_-	TIGR00737, Probable_tRNA-dihydrouridine_synthase, putative TIM-barrel protein, nifR3 family	NA|339aa|up_7|NC_016804.1_918433_919450_-	cd01050, Acyl_ACP_Desat, Acyl ACP desaturase, ferritin-like diiron-binding domain	NA|214aa|up_6|NC_016804.1_919611_920253_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|352aa|up_5|NC_016804.1_920333_921389_+	COG3662, COG3662, Uncharacterized protein conserved in bacteria [Function unknown]	csa3|131aa|up_4|NC_016804.1_921440_921833_-	smart00418, HTH_ARSR, helix_turn_helix, Arsenical Resistance Operon Repressor	NA|141aa|up_3|NC_016804.1_921890_922313_-	COG0590, CumB, Cytosine/adenosine deaminases [Nucleotide transport and metabolism / Translation, ribosomal structure and biogenesis]	NA|97aa|up_2|NC_016804.1_922274_922565_+	COG0675, COG0675, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|302aa|up_1|NC_016804.1_922669_923575_+	COG3315, COG3315, O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]	NA|272aa|up_0|NC_016804.1_923593_924409_-	TIGR04255, hypothetical_protein, TIGR04255 family protein	NA|883aa|down_0|NC_016804.1_928609_931258_-	pfam00934, PE, PE family	NA|215aa|down_1|NC_016804.1_931725_932370_+	pfam14032, PknH_C, PknH-like extracellular domain	NA|184aa|down_2|NC_016804.1_932350_932902_-	NA	NA|241aa|down_3|NC_016804.1_932982_933705_-	COG4849, COG4849, Predicted nucleotidyltransferase [General function prediction    only]	NA|343aa|down_4|NC_016804.1_933775_934804_-	COG4861, COG4861, Uncharacterized protein conserved in bacteria [Function unknown]	NA|261aa|down_5|NC_016804.1_935492_936275_+	pfam01427, Peptidase_M15, D-ala-D-ala dipeptidase	NA|271aa|down_6|NC_016804.1_936361_937174_+	pfam13847, Methyltransf_31, Methyltransferase domain	NA|287aa|down_7|NC_016804.1_937241_938102_-	TIGR01250, Proline_iminopeptidase, proline-specific peptidase, Bacillus coagulans-type subfamily	NA|81aa|down_8|NC_016804.1_938377_938620_+	NA	NA|431aa|down_9|NC_016804.1_938896_940189_+	cd17329, MFS_MdtH_MDR_like, Multidrug resistance protein MdtH and similar multidrug resistance (MDR) transporters of the Major Facilitator Superfamily
GCF_000234725.1_ASM23472v1	NC_016804	Mycobacterium tuberculosis variant bovis BCG str. Mexico, complete sequence	3	1213528-1214384	2	CRISPRCasFinder	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	GGCGGTGTCGGCGGTGCCGGCGG	23	4	81	1213911-1213932|1213911-1213932|1213956-1213971|1214094-1214115|1214094-1214115|1214211-1214229|1214211-1214229|1214211-1214229|1214211-1214229|1214211-1214229|1214211-1214229|1214211-1214229|1214211-1214229|1214211-1214229|1214211-1214229|1214211-1214229|1214211-1214229|1214211-1214229|1214211-1214229|1214211-1214229|1214211-1214229|1214211-1214229|1214211-1214229|1214211-1214229|1214211-1214229|1214211-1214229|1214211-1214229|1214211-1214229|1214211-1214229|1214211-1214229|1214211-1214229|1214211-1214229|1214211-1214229|1214211-1214229|1214211-1214229|1214211-1214229|1214211-1214229|1214211-1214229|1214211-1214229|1214211-1214229|1214211-1214229|1214211-1214229|1214211-1214229|1214211-1214229|1214211-1214229|1214211-1214229|1214211-1214229|1214211-1214229|1214211-1214229|1214211-1214229|1214211-1214229|1214211-1214229|1214211-1214229|1214211-1214229|1214211-1214229|1214211-1214229|1214211-1214229|1214211-1214229|1214211-1214229|1214211-1214229|1214211-1214229|1214211-1214229|1214211-1214229|1214211-1214229|1214211-1214229|1214211-1214229|1214211-1214229|1214211-1214229|1214211-1214229|1214211-1214229|1214211-1214229|1214211-1214229|1214211-1214229|1214211-1214229|1214211-1214229|1214211-1214229|1214211-1214229|1214211-1214229|1214211-1214229|1214211-1214229|1214211-1214229	NC_016804.1_2904367-2904346|NC_016804.1_2904433-2904412|NC_016804.1_2068939-2068924|NC_016804.1_839082-839103|NC_016804.1_1219348-1219369|NC_016804.1_335382-335364|NC_016804.1_676008-675990|NC_016804.1_841331-841349|NC_016804.1_1219321-1219339|NC_016804.1_1219393-1219411|NC_016804.1_1625789-1625771|NC_016804.1_1628615-1628597|NC_016804.1_1631473-1631455|NC_016804.1_1632235-1632217|NC_016804.1_1971579-1971561|NC_016804.1_2041923-2041905|NC_016804.1_2042469-2042451|NC_016804.1_2745278-2745260|NC_016804.1_2748795-2748777|NC_016804.1_3891921-3891939|NC_016804.1_150233-150251|NC_016804.1_332146-332128|NC_016804.1_333373-333355|NC_016804.1_336489-336471|NC_016804.1_336942-336924|NC_016804.1_336993-336975|NC_016804.1_337002-336984|NC_016804.1_339273-339255|NC_016804.1_339393-339375|NC_016804.1_339660-339642|NC_016804.1_339689-339707|NC_016804.1_339783-339765|NC_016804.1_364360-364342|NC_016804.1_444574-444556|NC_016804.1_547918-547900|NC_016804.1_625208-625226|NC_016804.1_625430-625448|NC_016804.1_675174-675156|NC_016804.1_842279-842297|NC_016804.1_1091737-1091755|NC_016804.1_1092385-1092403|NC_016804.1_1096455-1096437|NC_016804.1_1214583-1214601|NC_016804.1_1215090-1215108|NC_016804.1_1215342-1215360|NC_016804.1_1215360-1215378|NC_016804.1_1219741-1219759|NC_016804.1_1486003-1485985|NC_016804.1_1613749-1613731|NC_016804.1_1614202-1614184|NC_016804.1_1631338-1631320|NC_016804.1_1631347-1631329|NC_016804.1_1631560-1631542|NC_016804.1_1839849-1839831|NC_016804.1_1840377-1840359|NC_016804.1_1970853-1970835|NC_016804.1_1981811-1981829|NC_016804.1_2069137-2069119|NC_016804.1_2266528-2266510|NC_016804.1_2317783-2317765|NC_016804.1_2378993-2379011|NC_016804.1_2382976-2382958|NC_016804.1_2525659-2525641|NC_016804.1_2637936-2637954|NC_016804.1_2738594-2738576|NC_016804.1_2739176-2739158|NC_016804.1_2987643-2987661|NC_016804.1_2987742-2987760|NC_016804.1_3673450-3673468|NC_016804.1_3704585-3704567|NC_016804.1_3705209-3705191|NC_016804.1_3705452-3705434|NC_016804.1_3705584-3705566|NC_016804.1_3707489-3707471|NC_016804.1_3767914-3767932|NC_016804.1_3768097-3768115|NC_016804.1_3889354-3889372|NC_016804.1_3891093-3891111|NC_016804.1_3891747-3891765|NC_016804.1_3900170-3900188|NC_016804.1_3989987-3989969	NA	16	16	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|89aa|up_3|NC_016804.1_1208960_1209227_+,NA|61aa|down_3|NC_016804.1_1216928_1217111_+	NA|465aa|up_9|NC_016804.1_1203294_1204689_+	TIGR01137, Cystathionine_beta-synthase, cystathionine beta-synthase	NA|241aa|up_8|NC_016804.1_1204890_1205613_+	pfam06271, RDD, RDD family	NA|389aa|up_7|NC_016804.1_1205644_1206811_+	PRK07811, PRK07811, cystathionine gamma-synthase; Provisional	NA|165aa|up_6|NC_016804.1_1206881_1207376_-	PRK00226, greA, transcription elongation factor GreA; Reviewed	NA|145aa|up_5|NC_016804.1_1207561_1207996_-	pfam14155, DUF4307, Domain of unknown function (DUF4307)	NA|289aa|up_4|NC_016804.1_1208097_1208964_+	TIGR03446, mycothiol_Mca, mycothiol conjugate amidase Mca	NA|89aa|up_3|NC_016804.1_1208960_1209227_+	NA	NA|674aa|up_2|NC_016804.1_1209213_1211235_+	COG1331, COG1331, Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones]	NA|243aa|up_1|NC_016804.1_1211333_1212062_-	TIGR01065, Hypothetical_UPF0073_protein_yqfA	NA|263aa|up_0|NC_016804.1_1212172_1212961_+	PRK14828, PRK14828, undecaprenyl pyrophosphate synthase; Provisional	NA|107aa|down_0|NC_016804.1_1215743_1216064_+	COG0020, UppS, Undecaprenyl pyrophosphate synthase [Lipid metabolism]	NA|145aa|down_1|NC_016804.1_1216216_1216651_+	pfam00934, PE, PE family	NA|55aa|down_2|NC_016804.1_1216752_1216917_+	smart00637, CBD_II, CBD_II domain	NA|61aa|down_3|NC_016804.1_1216928_1217111_+	NA	NA|152aa|down_4|NC_016804.1_1217302_1217758_+	pfam01670, Glyco_hydro_12, Glycosyl hydrolase family 12	NA|851aa|down_5|NC_016804.1_1218172_1220725_+	pfam00934, PE, PE family	NA|313aa|down_6|NC_016804.1_1220942_1221881_-	PRK05439, PRK05439, pantothenate kinase; Provisional	NA|427aa|down_7|NC_016804.1_1222268_1223549_+	PRK00011, glyA, serine hydroxymethyltransferase; Reviewed	NA|276aa|down_8|NC_016804.1_1223653_1224481_+	cd01050, Acyl_ACP_Desat, Acyl ACP desaturase, ferritin-like diiron-binding domain	NA|434aa|down_9|NC_016804.1_1224691_1225993_+	COG1875, COG1875, NYN ribonuclease and ATPase of PhoH family domains [General    function prediction only]
GCF_000234725.1_ASM23472v1	NC_016804	Mycobacterium tuberculosis variant bovis BCG str. Mexico, complete sequence	4	2068609-2068863	2	CRT	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	GCCNCCGTCGCCGCCNNTGCC	21	2	3	2068690-2068707|2068690-2068707|2068780-2068797	NC_016804.1_402340-402323|NC_016804.1_608570-608553|NC_016804.1_3384066-3384049	NA	5	5	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|88aa|up_0|NC_016804.1_2067968_2068232_-,NA	NA|165aa|up_9|NC_016804.1_2054318_2054813_+	pfam02577, DNase-RNase, Bifunctional nuclease	NA|226aa|up_8|NC_016804.1_2055160_2055838_+	cd01105, HTH_GlnR-like, Helix-Turn-Helix DNA binding domain of GlnR-like transcription regulators	NA|942aa|up_7|NC_016804.1_2056196_2059022_+	PRK05367, PRK05367, aminomethyl-transferring glycine dehydrogenase	NA|287aa|up_6|NC_016804.1_2059248_2060109_-	PRK03204, PRK03204, haloalkane dehalogenase; Provisional	NA|289aa|up_5|NC_016804.1_2060149_2061016_+	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|629aa|up_4|NC_016804.1_2061020_2062907_-	TIGR00976, Hypothetical_protein_Rv1835c/MT1883/Mb1866c	NA|678aa|up_3|NC_016804.1_2062922_2064956_-	cd01456, vWA_ywmD_type, VWA ywmD type:Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF)	NA|742aa|up_2|NC_016804.1_2065075_2067301_-	PRK02999, PRK02999, malate synthase G; Provisional	NA|132aa|up_1|NC_016804.1_2067576_2067972_-	COG1848, COG1848, Predicted nucleic acid-binding protein, contains PIN domain [General function prediction only]	NA|88aa|up_0|NC_016804.1_2067968_2068232_-	NA	NA|350aa|down_0|NC_016804.1_2069999_2071049_-	COG1253, TlyC, Hemolysins and related proteins containing CBS domains [General function prediction only]	NA|456aa|down_1|NC_016804.1_2071048_2072416_-	COG1253, TlyC, Hemolysins and related proteins containing CBS domains [General function prediction only]	NA|479aa|down_2|NC_016804.1_2072589_2074026_-	PRK07807, PRK07807, GuaB1 family IMP dehydrogenase-related protein	NA|317aa|down_3|NC_016804.1_2075541_2076492_-	cd07326, M56_BlaR1_MecR1_like, Peptidase M56-like including those in BlaR1 and MecR1, integral membrane metallopeptidase	NA|139aa|down_4|NC_016804.1_2076506_2076923_-	COG3682, COG3682, Predicted transcriptional regulator [Transcription]	NA|141aa|down_5|NC_016804.1_2077200_2077623_+	cd03443, PaaI_thioesterase, PaaI_thioesterase is a tetrameric acyl-CoA thioesterase with a hot dog fold and one of several proteins responsible for phenylacetic acid (PA) degradation in bacteria	NA|101aa|down_6|NC_016804.1_2077671_2077974_+	pfam00547, Urease_gamma, Urease, gamma subunit	NA|105aa|down_7|NC_016804.1_2077970_2078285_+	PRK13202, ureB, urease subunit beta; Reviewed	NA|578aa|down_8|NC_016804.1_2078284_2080018_+	PRK13206, ureC, urease subunit alpha; Reviewed	NA|212aa|down_9|NC_016804.1_2080017_2080653_+	COG0830, UreF, Urease accessory protein UreF [Posttranslational modification, protein turnover, chaperones]
GCF_000234725.1_ASM23472v1	NC_016804	Mycobacterium tuberculosis variant bovis BCG str. Mexico, complete sequence	5	2150340-2150465	3	CRISPRCasFinder	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	TGCCAGCCGGAATCGTGATCGGCGGAACCGTCACCGACGGAATACTCA	48	0	0	NA	NA	NA	1	1	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|136aa|up_2|NC_016804.1_2140315_2140723_-,NA|127aa|down_5|NC_016804.1_2158074_2158455_-	NA|216aa|up_9|NC_016804.1_2133629_2134277_-	pfam14081, DUF4262, Domain of unknown function (DUF4262)	NA|741aa|up_8|NC_016804.1_2134283_2136506_-	PRK15061, PRK15061, catalase/peroxidase	NA|148aa|up_7|NC_016804.1_2136543_2136987_-	COG0735, Fur, Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]	NA|198aa|up_6|NC_016804.1_2137100_2137694_-	COG1881, COG1881, Phospholipid-binding protein [General function prediction only]	NA|202aa|up_5|NC_016804.1_2137776_2138382_-	COG1881, COG1881, Phospholipid-binding protein [General function prediction only]	NA|335aa|up_4|NC_016804.1_2138481_2139486_-	cd08275, MDR3, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family	NA|251aa|up_3|NC_016804.1_2139585_2140338_+	cd16282, metallo-hydrolase-like_MBL-fold, uncharacterized subgroup of the MBL-fold_metallo-hydrolase superfamily; MBL-fold metallo hydrolase domain	NA|136aa|up_2|NC_016804.1_2140315_2140723_-	NA	NA|767aa|up_1|NC_016804.1_2140857_2143158_+	PLN02892, PLN02892, isocitrate lyase	NA|1836aa|up_0|NC_016804.1_2143327_2148835_-	pfam00823, PPE, PPE family	NA|155aa|down_0|NC_016804.1_2152585_2153050_-	cd07821, PYR_PYL_RCAR_like, Pyrabactin resistance 1 (PYR1), PYR1-like (PYL), regulatory component of abscisic acid receptors (RCARs), and related proteins	NA|288aa|down_1|NC_016804.1_2153147_2154011_+	cd07987, LPLAT_MGAT-like, Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: MGAT-like	NA|424aa|down_2|NC_016804.1_2154048_2155320_-	TIGR01490, Uncharacterized_protein_Rv3661/MT3761, HAD-superfamily subfamily IB hydrolase, TIGR01490	NA|372aa|down_3|NC_016804.1_2155591_2156707_+	COG1680, AmpC, Beta-lactamase class C and other penicillin binding proteins [Defense mechanisms]	NA|447aa|down_4|NC_016804.1_2156697_2158038_+	pfam00144, Beta-lactamase, Beta-lactamase	NA|127aa|down_5|NC_016804.1_2158074_2158455_-	NA	NA|621aa|down_6|NC_016804.1_2158611_2160474_+	PRK12476, PRK12476, putative fatty-acid--CoA ligase; Provisional	NA|160aa|down_7|NC_016804.1_2160481_2160961_-	pfam09167, DUF1942, Domain of unknown function (DUF1942)	NA|258aa|down_8|NC_016804.1_2161197_2161971_+	COG3361, COG3361, Uncharacterized conserved protein [Function unknown]	NA|256aa|down_9|NC_016804.1_2161974_2162742_-	PRK05867, PRK05867, SDR family oxidoreductase
GCF_000234725.1_ASM23472v1	NC_016804	Mycobacterium tuberculosis variant bovis BCG str. Mexico, complete sequence	6	3051998-3053425	1,4,3	PILER-CR,CRISPRCasFinder,CRT	no	c2c9_V-U4,cas2,cas1,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Type III-B,Type III-D,Type III-C,Type III-A	GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC,GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC,GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC	36,36,36	0	0	NA	NA	II-B,III-A:II-B,III-A:II-B,III-A	18,18,19	19	TypeIII-B,TypeIII-D,TypeIII-C,TypeIII-A	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|85aa|up_8|NC_016804.1_3045277_3045532_-,NA|135aa|up_7|NC_016804.1_3045679_3046084_+,NA|64aa|up_6|NC_016804.1_3046080_3046272_+,NA|86aa|up_4|NC_016804.1_3047858_3048116_+,NA|104aa|up_3|NC_016804.1_3048220_3048532_+,NA|203aa|up_2|NC_016804.1_3048951_3049560_+,NA	NA|92aa|up_9|NC_016804.1_3044826_3045102_+	COG4453, COG4453, Uncharacterized protein conserved in bacteria [Function unknown]	NA|85aa|up_8|NC_016804.1_3045277_3045532_-	NA	NA|135aa|up_7|NC_016804.1_3045679_3046084_+	NA	NA|64aa|up_6|NC_016804.1_3046080_3046272_+	NA	NA|385aa|up_5|NC_016804.1_3046470_3047625_+	pfam00665, rve, Integrase core domain	NA|86aa|up_4|NC_016804.1_3047858_3048116_+	NA	NA|104aa|up_3|NC_016804.1_3048220_3048532_+	NA	NA|203aa|up_2|NC_016804.1_3048951_3049560_+	NA	NA|470aa|up_1|NC_016804.1_3049630_3051040_+	pfam00665, rve, Integrase core domain	NA|271aa|up_0|NC_016804.1_3051036_3051849_+	COG3267, ExeA, Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]	NA|421aa|down_0|NC_016804.1_3053451_3054713_-	PHA02517, PHA02517, putative transposase OrfB; Reviewed	cas2|114aa|down_1|NC_016804.1_3056966_3057308_-	COG1343, COG1343, CRISPR-associated protein Cas2 [Defense mechanisms]	cas1|339aa|down_2|NC_016804.1_3057308_3058325_-	TIGR00287, CRISPR-associated_endonuclease_Cas1, CRISPR-associated endonuclease Cas1	csm5gr7|376aa|down_3|NC_016804.1_3059581_3060709_-	COG1332, COG1332, CRISPR system related protein, RAMP superfamily [Defense mechanisms]	csm4gr5|303aa|down_4|NC_016804.1_3060705_3061614_-	COG1567, COG1567, CRISPR system related protein, RAMP superfamily [Defense    mechanisms]	csm3gr7|237aa|down_5|NC_016804.1_3061594_3062305_-	cd09684, Csm3_III-A, CRISPR/Cas system-associated RAMP superfamily protein Csm3	csm2gr11|125aa|down_6|NC_016804.1_3062314_3062689_-	TIGR01870, CRISPR_type_III-associated_protein_Csm2, CRISPR type III-A/MTUBE-associated protein Csm2	cas10|813aa|down_7|NC_016804.1_3062685_3065124_-	cd09680, Cas10_III, CRISPR/Cas system-associated protein Cas10	cas6|241aa|down_8|NC_016804.1_3065120_3065843_-	COG5551, COG5551, CRISPR system related protein, RAMP superfamily [Defense    mechanisms]	NA|182aa|down_9|NC_016804.1_3066242_3066788_-	COG4293, COG4293, Uncharacterized protein conserved in bacteria [Function unknown]
GCF_000234725.1_ASM23472v1	NC_016804	Mycobacterium tuberculosis variant bovis BCG str. Mexico, complete sequence	7	3054748-3056918	5,4,2	CRISPRCasFinder,CRT,PILER-CR	no	cas2,cas1,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Type III-B,Type III-D,Type III-C,Type III-A	GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC,GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC,GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC	36,36,36	0	0	NA	NA	II-B,III-A:II-B,III-A:II-B,III-A	29,29,28	29	TypeIII-B,TypeIII-D,TypeIII-C,TypeIII-A	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|85aa|up_9|NC_016804.1_3045277_3045532_-,NA|135aa|up_8|NC_016804.1_3045679_3046084_+,NA|64aa|up_7|NC_016804.1_3046080_3046272_+,NA|86aa|up_5|NC_016804.1_3047858_3048116_+,NA|104aa|up_4|NC_016804.1_3048220_3048532_+,NA|203aa|up_3|NC_016804.1_3048951_3049560_+,NA	NA|85aa|up_9|NC_016804.1_3045277_3045532_-	NA	NA|135aa|up_8|NC_016804.1_3045679_3046084_+	NA	NA|64aa|up_7|NC_016804.1_3046080_3046272_+	NA	NA|385aa|up_6|NC_016804.1_3046470_3047625_+	pfam00665, rve, Integrase core domain	NA|86aa|up_5|NC_016804.1_3047858_3048116_+	NA	NA|104aa|up_4|NC_016804.1_3048220_3048532_+	NA	NA|203aa|up_3|NC_016804.1_3048951_3049560_+	NA	NA|470aa|up_2|NC_016804.1_3049630_3051040_+	pfam00665, rve, Integrase core domain	NA|271aa|up_1|NC_016804.1_3051036_3051849_+	COG3267, ExeA, Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]	NA|421aa|up_0|NC_016804.1_3053451_3054713_-	PHA02517, PHA02517, putative transposase OrfB; Reviewed	cas2|114aa|down_0|NC_016804.1_3056966_3057308_-	COG1343, COG1343, CRISPR-associated protein Cas2 [Defense mechanisms]	cas1|339aa|down_1|NC_016804.1_3057308_3058325_-	TIGR00287, CRISPR-associated_endonuclease_Cas1, CRISPR-associated endonuclease Cas1	csm5gr7|376aa|down_2|NC_016804.1_3059581_3060709_-	COG1332, COG1332, CRISPR system related protein, RAMP superfamily [Defense mechanisms]	csm4gr5|303aa|down_3|NC_016804.1_3060705_3061614_-	COG1567, COG1567, CRISPR system related protein, RAMP superfamily [Defense    mechanisms]	csm3gr7|237aa|down_4|NC_016804.1_3061594_3062305_-	cd09684, Csm3_III-A, CRISPR/Cas system-associated RAMP superfamily protein Csm3	csm2gr11|125aa|down_5|NC_016804.1_3062314_3062689_-	TIGR01870, CRISPR_type_III-associated_protein_Csm2, CRISPR type III-A/MTUBE-associated protein Csm2	cas10|813aa|down_6|NC_016804.1_3062685_3065124_-	cd09680, Cas10_III, CRISPR/Cas system-associated protein Cas10	cas6|241aa|down_7|NC_016804.1_3065120_3065843_-	COG5551, COG5551, CRISPR system related protein, RAMP superfamily [Defense    mechanisms]	NA|182aa|down_8|NC_016804.1_3066242_3066788_-	COG4293, COG4293, Uncharacterized protein conserved in bacteria [Function unknown]	NA|295aa|down_9|NC_016804.1_3067059_3067944_-	COG2253, COG2253, Uncharacterized conserved protein [Function unknown]
GCF_000234725.1_ASM23472v1	NC_016804	Mycobacterium tuberculosis variant bovis BCG str. Mexico, complete sequence	8	3907629-3908373	5	CRT	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	GCNNCGGCGGNNCCGGCGGNNNCGGCGG	28	3	11	3907657-3907718|3907657-3907718|3907657-3907718|3907747-3907793|3907747-3907793|3907747-3907793|3907822-3907847|3907822-3907847|3907822-3907847|3907822-3907847|3907822-3907847	NC_016804.1_3906661-3906722|NC_016804.1_3907012-3907073|NC_016804.1_3907297-3907358|NC_016804.1_3906400-3906446|NC_016804.1_3906751-3906797|NC_016804.1_3907387-3907433|NC_016804.1_3891849-3891874|NC_016804.1_3906475-3906500|NC_016804.1_3906826-3906851|NC_016804.1_3907111-3907136|NC_016804.1_3907471-3907496	NA	10	10	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|1023aa|up_1|NC_016804.1_3901394_3904463_+,NA|280aa|down_2|NC_016804.1_3911688_3912528_+	NA|64aa|up_9|NC_016804.1_3880926_3881118_-	COG1141, Fer, Ferredoxin [Energy production and conversion]	NA|401aa|up_8|NC_016804.1_3881332_3882535_+	cd01152, ACAD_fadE6_17_26, Putative acyl-CoA dehydrogenases similar to fadE6, fadE17, and fadE26	NA|374aa|up_7|NC_016804.1_3882559_3883681_+	COG1960, CaiA, Acyl-CoA dehydrogenases [Lipid metabolism]	NA|503aa|up_6|NC_016804.1_3883751_3885260_+	PRK07867, PRK07867, acyl-CoA synthetase; Validated	NA|1373aa|up_5|NC_016804.1_3885430_3889549_+	pfam00934, PE, PE family	NA|2095aa|up_4|NC_016804.1_3889839_3896124_+	pfam00934, PE, PE family	NA|516aa|up_3|NC_016804.1_3896290_3897838_-	PRK07586, PRK07586, acetolactate synthase large subunit	NA|279aa|up_2|NC_016804.1_3897834_3898671_-	COG2159, COG2159, Predicted metal-dependent hydrolase of the TIM-barrel fold [General function prediction only]	NA|1023aa|up_1|NC_016804.1_3901394_3904463_+	NA	NA|219aa|up_0|NC_016804.1_3904591_3905248_-	PRK07798, PRK07798, acyl-CoA synthetase; Validated	NA|549aa|down_0|NC_016804.1_3909081_3910728_-	PRK07798, PRK07798, acyl-CoA synthetase; Validated	NA|264aa|down_1|NC_016804.1_3910801_3911593_+	PRK07799, PRK07799, crotonase/enoyl-CoA hydratase family protein	NA|280aa|down_2|NC_016804.1_3911688_3912528_+	NA	NA|237aa|down_3|NC_016804.1_3913806_3914517_+	pfam06314, ADC, Acetoacetate decarboxylase (ADC)	NA|348aa|down_4|NC_016804.1_3914581_3915625_-	TIGR03559, F420_Rv3520c, probable F420-dependent oxidoreductase, Rv3520c family	NA|304aa|down_5|NC_016804.1_3915777_3916689_+	COG1545, COG1545, Predicted nucleic-acid-binding protein containing a Zn-ribbon [General function prediction only]	NA|355aa|down_6|NC_016804.1_3916704_3917769_+	PRK07937, PRK07937, lipid-transfer protein; Provisional	NA|395aa|down_7|NC_016804.1_3917785_3918970_+	PRK08313, PRK08313, thiolase domain-containing protein	NA|344aa|down_8|NC_016804.1_3919011_3920043_+	cd14952, NHL_PKND_like, NHL repeat domain of the protein kinase PknD	NA|175aa|down_9|NC_016804.1_3920056_3920581_-	COG0663, PaaY, Carbonic anhydrases/acetyltransferases, isoleucine patch superfamily [General function prediction only]
GCF_000234725.1_ASM23472v1	NC_016804	Mycobacterium tuberculosis variant bovis BCG str. Mexico, complete sequence	9	4046493-4046818	6	CRISPRCasFinder	no	cas3	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Unclear	CGCCGGGCTGTTCGGCGACGGCGGC	25	1	41	4046518-4046539|4046518-4046539|4046518-4046539|4046518-4046539|4046518-4046539|4046518-4046539|4046518-4046539|4046518-4046539|4046518-4046539|4046518-4046539|4046518-4046539|4046518-4046539|4046518-4046539|4046518-4046539|4046518-4046539|4046518-4046539|4046518-4046539|4046518-4046539|4046518-4046539|4046518-4046539|4046518-4046539|4046518-4046539|4046518-4046539|4046518-4046539|4046518-4046539|4046518-4046539|4046518-4046539|4046518-4046539|4046518-4046539|4046518-4046539|4046518-4046539|4046518-4046539|4046518-4046539|4046518-4046539|4046518-4046539|4046518-4046539|4046518-4046539|4046518-4046539|4046518-4046539|4046518-4046539|4046518-4046539	NC_016804.1_970527-970506|NC_016804.1_332145-332124|NC_016804.1_339392-339371|NC_016804.1_1839950-1839929|NC_016804.1_2383434-2383413|NC_016804.1_3704584-3704563|NC_016804.1_3905675-3905696|NC_016804.1_335195-335174|NC_016804.1_335381-335360|NC_016804.1_336488-336467|NC_016804.1_336992-336971|NC_016804.1_339086-339065|NC_016804.1_673733-673712|NC_016804.1_675173-675152|NC_016804.1_841179-841200|NC_016804.1_929107-929086|NC_016804.1_970047-970026|NC_016804.1_1091738-1091759|NC_016804.1_1190697-1190676|NC_016804.1_1193222-1193201|NC_016804.1_1485351-1485330|NC_016804.1_1486002-1485981|NC_016804.1_1632234-1632213|NC_016804.1_1970999-1970978|NC_016804.1_1972229-1972208|NC_016804.1_1982601-1982622|NC_016804.1_2042276-2042255|NC_016804.1_2747770-2747749|NC_016804.1_3096072-3096093|NC_016804.1_3707488-3707467|NC_016804.1_3746013-3746034|NC_016804.1_3887528-3887549|NC_016804.1_3893044-3893065|NC_016804.1_3893368-3893389|NC_016804.1_3893965-3893986|NC_016804.1_3894589-3894610|NC_016804.1_3895186-3895207|NC_016804.1_3900237-3900258|NC_016804.1_3902676-3902697|NC_016804.1_3989887-3989866|NC_016804.1_3989986-3989965	NA	5	5	Unclear	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|64aa|up_9|NC_016804.1_4033545_4033737_+,NA|193aa|up_5|NC_016804.1_4039995_4040574_-,NA|100aa|down_1|NC_016804.1_4047477_4047777_-,NA|257aa|down_8|NC_016804.1_4053742_4054513_-	NA|64aa|up_9|NC_016804.1_4033545_4033737_+	NA	NA|402aa|up_8|NC_016804.1_4033901_4035107_-	PRK07940, PRK07940, DNA polymerase III subunit delta'; Validated	NA|550aa|up_7|NC_016804.1_4035192_4036842_+	cd07302, CHD, cyclase homology domain	NA|935aa|up_6|NC_016804.1_4036838_4039643_-	PRK07561, PRK07561, DNA topoisomerase I subunit omega; Validated	NA|193aa|up_5|NC_016804.1_4039995_4040574_-	NA	NA|68aa|up_4|NC_016804.1_4040713_4040917_-	COG1278, CspC, Cold shock proteins [Transcription]	cas3|772aa|up_3|NC_016804.1_4041166_4043482_+	TIGR03817, DECH_helic, helicase/secretion neighborhood putative DEAH-box helicase	NA|95aa|up_2|NC_016804.1_4043618_4043903_+	pfam00934, PE, PE family	NA|346aa|up_1|NC_016804.1_4044226_4045264_+	pfam18621, DUF5628, Family of unknown function (DUF5628)	NA|105aa|up_0|NC_016804.1_4046017_4046332_+	pfam00934, PE, PE family	NA|126aa|down_0|NC_016804.1_4047137_4047515_-	TIGR03816, tadE_like_DECH, helicase/secretion neighborhood TadE-like protein	NA|100aa|down_1|NC_016804.1_4047477_4047777_-	NA	NA|69aa|down_2|NC_016804.1_4047800_4048007_-	pfam14029, DUF4244, Protein of unknown function (DUF4244)	NA|192aa|down_3|NC_016804.1_4048016_4048592_-	COG2064, TadC, Flp pilus assembly protein TadC [Cell motility and secretion / Intracellular trafficking and secretion]	NA|267aa|down_4|NC_016804.1_4048615_4049416_-	COG4965, TadB, Flp pilus assembly protein TadB [Intracellular trafficking and secretion]	NA|388aa|down_5|NC_016804.1_4049412_4050576_-	TIGR03819, heli_sec_ATPase, helicase/secretion neighborhood ATPase	NA|351aa|down_6|NC_016804.1_4050572_4051625_-	TIGR03815, CpaE_hom_Actino, helicase/secretion neighborhood CpaE-like protein	NA|288aa|down_7|NC_016804.1_4052124_4052988_+	TIGR01490, Uncharacterized_protein_Rv3661/MT3761, HAD-superfamily subfamily IB hydrolase, TIGR01490	NA|257aa|down_8|NC_016804.1_4053742_4054513_-	NA	NA|549aa|down_9|NC_016804.1_4054509_4056156_-	COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
GCF_000234725.1_ASM23472v1	NC_016804	Mycobacterium tuberculosis variant bovis BCG str. Mexico, complete sequence	10	4046895-4046973	7	CRISPRCasFinder	no	cas3	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Unclear	CGCCGGGCTGTTCGGCGACGGCGGC	25	0	0	NA	NA	NA	1	1	Unclear	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|64aa|up_9|NC_016804.1_4033545_4033737_+,NA|193aa|up_5|NC_016804.1_4039995_4040574_-,NA|100aa|down_1|NC_016804.1_4047477_4047777_-,NA|257aa|down_8|NC_016804.1_4053742_4054513_-	NA|64aa|up_9|NC_016804.1_4033545_4033737_+	NA	NA|402aa|up_8|NC_016804.1_4033901_4035107_-	PRK07940, PRK07940, DNA polymerase III subunit delta'; Validated	NA|550aa|up_7|NC_016804.1_4035192_4036842_+	cd07302, CHD, cyclase homology domain	NA|935aa|up_6|NC_016804.1_4036838_4039643_-	PRK07561, PRK07561, DNA topoisomerase I subunit omega; Validated	NA|193aa|up_5|NC_016804.1_4039995_4040574_-	NA	NA|68aa|up_4|NC_016804.1_4040713_4040917_-	COG1278, CspC, Cold shock proteins [Transcription]	cas3|772aa|up_3|NC_016804.1_4041166_4043482_+	TIGR03817, DECH_helic, helicase/secretion neighborhood putative DEAH-box helicase	NA|95aa|up_2|NC_016804.1_4043618_4043903_+	pfam00934, PE, PE family	NA|346aa|up_1|NC_016804.1_4044226_4045264_+	pfam18621, DUF5628, Family of unknown function (DUF5628)	NA|105aa|up_0|NC_016804.1_4046017_4046332_+	pfam00934, PE, PE family	NA|126aa|down_0|NC_016804.1_4047137_4047515_-	TIGR03816, tadE_like_DECH, helicase/secretion neighborhood TadE-like protein	NA|100aa|down_1|NC_016804.1_4047477_4047777_-	NA	NA|69aa|down_2|NC_016804.1_4047800_4048007_-	pfam14029, DUF4244, Protein of unknown function (DUF4244)	NA|192aa|down_3|NC_016804.1_4048016_4048592_-	COG2064, TadC, Flp pilus assembly protein TadC [Cell motility and secretion / Intracellular trafficking and secretion]	NA|267aa|down_4|NC_016804.1_4048615_4049416_-	COG4965, TadB, Flp pilus assembly protein TadB [Intracellular trafficking and secretion]	NA|388aa|down_5|NC_016804.1_4049412_4050576_-	TIGR03819, heli_sec_ATPase, helicase/secretion neighborhood ATPase	NA|351aa|down_6|NC_016804.1_4050572_4051625_-	TIGR03815, CpaE_hom_Actino, helicase/secretion neighborhood CpaE-like protein	NA|288aa|down_7|NC_016804.1_4052124_4052988_+	TIGR01490, Uncharacterized_protein_Rv3661/MT3761, HAD-superfamily subfamily IB hydrolase, TIGR01490	NA|257aa|down_8|NC_016804.1_4053742_4054513_-	NA	NA|549aa|down_9|NC_016804.1_4054509_4056156_-	COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
GCF_000234725.1_ASM23472v1	NC_016804	Mycobacterium tuberculosis variant bovis BCG str. Mexico, complete sequence	11	4063156-4063244	8	CRISPRCasFinder	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	GCTCGGCGACGATGCGGGCCGGATGACGGCC	31	0	0	NA	NA	NA	1	1	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|257aa|up_6|NC_016804.1_4053742_4054513_-,NA|233aa|up_0|NC_016804.1_4062260_4062959_-,NA|126aa|down_6|NC_016804.1_4068479_4068857_+	NA|388aa|up_9|NC_016804.1_4049412_4050576_-	TIGR03819, heli_sec_ATPase, helicase/secretion neighborhood ATPase	NA|351aa|up_8|NC_016804.1_4050572_4051625_-	TIGR03815, CpaE_hom_Actino, helicase/secretion neighborhood CpaE-like protein	NA|288aa|up_7|NC_016804.1_4052124_4052988_+	TIGR01490, Uncharacterized_protein_Rv3661/MT3761, HAD-superfamily subfamily IB hydrolase, TIGR01490	NA|257aa|up_6|NC_016804.1_4053742_4054513_-	NA	NA|549aa|up_5|NC_016804.1_4054509_4056156_-	COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]	NA|288aa|up_4|NC_016804.1_4056152_4057016_-	COG1173, DppC, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|309aa|up_3|NC_016804.1_4057008_4057935_-	COG0601, DppB, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|542aa|up_2|NC_016804.1_4057936_4059562_-	cd00995, PBP2_NikA_DppA_OppA_like, The substrate-binding domain of an ABC-type nickel/oligopeptide-like import system contains the type 2 periplasmic binding fold	NA|652aa|up_1|NC_016804.1_4060269_4062225_+	PRK00174, PRK00174, acetyl-CoA synthetase; Provisional	NA|233aa|up_0|NC_016804.1_4062260_4062959_-	NA	NA|173aa|down_0|NC_016804.1_4063304_4063823_+	pfam07332, Phage_holin_3_6, Putative Actinobacterial Holin-X, holin superfamily III	NA|328aa|down_1|NC_016804.1_4063823_4064807_+	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|398aa|down_2|NC_016804.1_4064799_4065993_-	pfam13365, Trypsin_2, Trypsin-like peptidase domain	NA|274aa|down_3|NC_016804.1_4065998_4066820_-	cd03426, CoAse, Coenzyme A pyrophosphatase (CoAse), a member of the Nudix hydrolase superfamily, functions to catalyze the elimination of oxidized inactive CoA, which can inhibit CoA-utilizing enzymes	NA|228aa|down_4|NC_016804.1_4066951_4067635_-	cd02966, TlpA_like_family, TlpA-like family; composed of  TlpA, ResA, DsbE and similar proteins	NA|246aa|down_5|NC_016804.1_4067634_4068372_-	COG0177, Nth, Predicted EndoIII-related endonuclease [DNA replication, recombination, and repair]	NA|126aa|down_6|NC_016804.1_4068479_4068857_+	NA	NA|225aa|down_7|NC_016804.1_4068955_4069630_+	COG0664, Crp, cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms]	NA|265aa|down_8|NC_016804.1_4069735_4070530_-	cd16278, metallo-hydrolase-like_MBL-fold, uncharacterized subgroup of the MBL-fold_metallo-hydrolase superfamily; MBL-fold metallo hydrolase domain	NA|152aa|down_9|NC_016804.1_4070536_4070992_-	cd02199, YjgF_YER057c_UK114_like_1, This group of proteins belong to a large family of YjgF/YER057c/UK114-like proteins present in bacteria, archaea, and eukaryotes with no definitive function
