assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000230695.2_ASM23069v3	NC_020541	Rhodanobacter denitrificans, complete sequence	1	324936-325035	1	CRISPRCasFinder	no		WYL,csa3,cas3,DEDDh,DinG,RT,PD-DExK	Orphan	AACCGGCCATCCTTGGCCGGACT	23	0	0	NA	NA	NA	1	1	Orphan	WYL,csa3,cas3,DEDDh,DinG,RT,PD-DExK	NA|48aa|up_1|NC_020541.1_323752_323896_+,NA|190aa|down_2|NC_020541.1_326172_326742_+,NA|81aa|down_5|NC_020541.1_329115_329358_+,NA|219aa|down_7|NC_020541.1_332190_332847_+	NA|1147aa|up_9|NC_020541.1_309982_313423_-	PHA03095, PHA03095, ankyrin-like protein; Provisional	NA|98aa|up_8|NC_020541.1_313494_313788_-	pfam05166, YcgL, YcgL domain	NA|499aa|up_7|NC_020541.1_314038_315535_+	COG2067, FadL, Long-chain fatty acid transport protein [Lipid metabolism]	NA|472aa|up_6|NC_020541.1_315610_317026_-	cd07133, ALDH_CALDH_CalB, Coniferyl aldehyde dehydrogenase-like	NA|1052aa|up_5|NC_020541.1_317231_320387_-	PRK11904, PRK11904, bifunctional proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase PutA	NA|147aa|up_4|NC_020541.1_320635_321076_+	pfam10003, DUF2244, Integral membrane protein (DUF2244)	NA|304aa|up_3|NC_020541.1_321096_322008_+	cd13912, CcO_II_C, C-terminal domain of Cytochrome c Oxidase subunit II	NA|539aa|up_2|NC_020541.1_322080_323697_+	cd01663, Cyt_c_Oxidase_I, Cytochrome C oxidase subunit I	NA|48aa|up_1|NC_020541.1_323752_323896_+	NA	NA|296aa|up_0|NC_020541.1_324008_324896_+	cd01665, Cyt_c_Oxidase_III, Cytochrome c oxidase subunit III	NA|72aa|down_0|NC_020541.1_325140_325356_-	pfam11137, DUF2909, Protein of unknown function (DUF2909)	NA|244aa|down_1|NC_020541.1_325415_326147_+	cd06662, SURF1, SURF1 superfamily	NA|190aa|down_2|NC_020541.1_326172_326742_+	NA	NA|392aa|down_3|NC_020541.1_326741_327917_+	pfam02628, COX15-CtaA, Cytochrome oxidase assembly protein	NA|301aa|down_4|NC_020541.1_327918_328821_+	PRK04375, PRK04375, protoheme IX farnesyltransferase; Provisional	NA|81aa|down_5|NC_020541.1_329115_329358_+	NA	NA|885aa|down_6|NC_020541.1_329514_332169_+	PRK15122, PRK15122, magnesium-transporting ATPase; Provisional	NA|219aa|down_7|NC_020541.1_332190_332847_+	NA	NA|332aa|down_8|NC_020541.1_332870_333866_-	pfam13593, SBF_like, SBF-like CPA transporter family (DUF4137)	NA|207aa|down_9|NC_020541.1_333876_334497_-	COG0586, DedA, Uncharacterized membrane-associated protein [Function unknown]
GCF_000230695.2_ASM23069v3	NC_020541	Rhodanobacter denitrificans, complete sequence	2	978279-978355	2	CRISPRCasFinder	no		WYL,csa3,cas3,DEDDh,DinG,RT,PD-DExK	Orphan	ACCAGCGTGGGTTCGGGCGACCT	23	0	0	NA	NA	NA	1	1	Orphan	WYL,csa3,cas3,DEDDh,DinG,RT,PD-DExK	NA|165aa|up_0|NC_020541.1_977220_977715_-,NA	NA|173aa|up_9|NC_020541.1_970176_970695_+	pfam01584, CheW, CheW-like domain	NA|245aa|up_8|NC_020541.1_970715_971450_-	PRK11713, PRK11713, 16S ribosomal RNA methyltransferase RsmE; Provisional	NA|92aa|up_7|NC_020541.1_971660_971936_+	pfam11362, DUF3161, Protein of unknown function (DUF3161)	NA|455aa|up_6|NC_020541.1_971948_973313_-	PRK07030, PRK07030, adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional	NA|263aa|up_5|NC_020541.1_973380_974169_+	pfam01203, T2SSN, Type II secretion system (T2SS), protein N	NA|259aa|up_4|NC_020541.1_974185_974962_+	cd01641, Bacterial_IMPase_like_1, Predominantly bacterial family of Mg++ dependend phosphatases, related to inositol monophosphatases	NA|186aa|up_3|NC_020541.1_974985_975543_+	PRK11762, nudE, adenosine nucleotide hydrolase NudE; Provisional	NA|274aa|up_2|NC_020541.1_975539_976361_+	cd01638, CysQ, CysQ, a 3'-Phosphoadenosine-5'-phosphosulfate (PAPS) 3'-phosphatase, is a bacterial member of the inositol monophosphatase family	NA|271aa|up_1|NC_020541.1_976357_977170_+	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed	NA|165aa|up_0|NC_020541.1_977220_977715_-	NA	NA|373aa|down_0|NC_020541.1_978641_979760_-	cd01117, YbiR_permease, Putative anion permease YbiR	NA|828aa|down_1|NC_020541.1_979815_982299_-	COG3127, COG3127, Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, permease component [Secondary metabolites biosynthesis, transport, and catabolism]	NA|234aa|down_2|NC_020541.1_982295_982997_-	COG4181, COG4181, Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]	NA|204aa|down_3|NC_020541.1_982995_983607_+	cd01822, Lysophospholipase_L1_like, Lysophospholipase L1-like subgroup of SGNH-hydrolases	NA|244aa|down_4|NC_020541.1_983705_984437_+	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|341aa|down_5|NC_020541.1_984474_985497_+	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|452aa|down_6|NC_020541.1_985536_986892_-	TIGR02428, 3-oxoadipate_CoA-transferase_subunit_B, 3-oxoacid CoA-transferase, B subunit	NA|124aa|down_7|NC_020541.1_987059_987431_+	pfam03965, Penicillinase_R, Penicillinase repressor	NA|522aa|down_8|NC_020541.1_987417_988983_+	pfam05569, Peptidase_M56, BlaR1 peptidase M56	NA|332aa|down_9|NC_020541.1_989082_990078_+	pfam01112, Asparaginase_2, Asparaginase
GCF_000230695.2_ASM23069v3	NC_020541	Rhodanobacter denitrificans, complete sequence	3	3295043-3295139	3	CRISPRCasFinder	no	DinG	WYL,csa3,cas3,DEDDh,DinG,RT,PD-DExK	Type IV-A	CGTCGATGCTGCGCGCCAGCGGCAG	25	0	0	NA	NA	NA	1	1	Orphan	WYL,csa3,cas3,DEDDh,DinG,RT,PD-DExK	NA|250aa|up_4|NC_020541.1_3290241_3290991_+,NA|106aa|up_1|NC_020541.1_3293147_3293465_-,NA|262aa|down_6|NC_020541.1_3300560_3301346_-,NA|117aa|down_7|NC_020541.1_3301344_3301695_+	NA|322aa|up_9|NC_020541.1_3285537_3286503_+	TIGR00679, HPr_kinase/phosphorylase, Hpr(Ser) kinase/phosphatase	NA|302aa|up_8|NC_020541.1_3286507_3287413_+	PRK05416, PRK05416, RNase adapter RapZ	NA|131aa|up_7|NC_020541.1_3287450_3287843_+	COG2893, ManX, Phosphotransferase system, mannose/fructose-specific component IIA [Carbohydrate transport and metabolism]	NA|90aa|up_6|NC_020541.1_3287851_3288121_+	pfam00381, PTS-HPr, PTS HPr component phosphorylation site	NA|582aa|up_5|NC_020541.1_3288271_3290017_+	COG1080, PtsA, Phosphoenolpyruvate-protein kinase (PTS system EI component in bacteria) [Carbohydrate transport and metabolism]	NA|250aa|up_4|NC_020541.1_3290241_3290991_+	NA	NA|298aa|up_3|NC_020541.1_3291030_3291924_-	cd08420, PBP2_CysL_like, C-terminal substrate binding domain of LysR-type transcriptional regulator CysL, which activates the transcription of the cysJI operon encoding sulfite reductase, contains the type 2 periplasmic binding fold	NA|341aa|up_2|NC_020541.1_3292024_3293047_+	COG2855, COG2855, Predicted membrane protein [Function unknown]	NA|106aa|up_1|NC_020541.1_3293147_3293465_-	NA	NA|231aa|up_0|NC_020541.1_3293736_3294429_-	TIGR03725, T6A_YeaZ, tRNA threonylcarbamoyl adenosine modification protein YeaZ	NA|235aa|down_0|NC_020541.1_3295941_3296646_-	COG0400, COG0400, Predicted esterase [General function prediction only]	NA|270aa|down_1|NC_020541.1_3296642_3297452_-	cd07363, 45_DOPA_Dioxygenase, The Class III extradiol dioxygenase, 4,5-DOPA Dioxygenase, catalyzes the incorporation of both atoms of molecular oxygen into 4,5-dihydroxy-phenylalanine	NA|130aa|down_2|NC_020541.1_3297515_3297905_-	COG2259, COG2259, Predicted membrane protein [Function unknown]	NA|211aa|down_3|NC_020541.1_3297950_3298583_-	COG2085, COG2085, Predicted dinucleotide-binding enzymes [General function prediction only]	NA|306aa|down_4|NC_020541.1_3298707_3299625_+	cd08422, PBP2_CrgA_like, The C-terminal substrate binding domain of LysR-type transcriptional regulator CrgA and its related homologs, contains the type 2 periplasmic binding domain	NA|254aa|down_5|NC_020541.1_3299651_3300413_-	pfam08241, Methyltransf_11, Methyltransferase domain	NA|262aa|down_6|NC_020541.1_3300560_3301346_-	NA	NA|117aa|down_7|NC_020541.1_3301344_3301695_+	NA	NA|90aa|down_8|NC_020541.1_3301703_3301973_-	cd10153, RcnR-FrmR-like_DUF156, Transcriptional regulators RcnR and FrmR, and related domains; this domain family was previously known as part of DUF156	NA|318aa|down_9|NC_020541.1_3302028_3302982_+	COG1230, CzcD, Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism]
GCF_000230695.2_ASM23069v3	NC_020541	Rhodanobacter denitrificans, complete sequence	4	3541412-3541516	4	CRISPRCasFinder	no	cas3	WYL,csa3,cas3,DEDDh,DinG,RT,PD-DExK	Unclear	ATTGAAAAGTGCGGCCAAGGATGGCCGCCCGTTTGATCTT	40	0	0	NA	NA	NA	1	1	Unclear	WYL,csa3,cas3,DEDDh,DinG,RT,PD-DExK	NA|224aa|up_3|NC_020541.1_3537819_3538491_+,NA	NA|715aa|up_9|NC_020541.1_3529781_3531926_-	TIGR02515, Putative_DNA_transport_protein_HofQ, type IV pilus secretin (or competence protein) PilQ	NA|181aa|up_8|NC_020541.1_3531981_3532524_-	pfam04351, PilP, Pilus assembly protein, PilP	NA|218aa|up_7|NC_020541.1_3532523_3533177_-	COG3167, PilO, Tfp pilus assembly protein PilO [Cell motility and secretion / Intracellular trafficking and secretion]	NA|242aa|up_6|NC_020541.1_3533173_3533899_-	COG3166, PilN, Tfp pilus assembly protein PilN [Cell motility and secretion / Intracellular trafficking and secretion]	NA|353aa|up_5|NC_020541.1_3533898_3534957_-	pfam11104, PilM_2, Type IV pilus assembly protein PilM;	NA|843aa|up_4|NC_020541.1_3535229_3537758_+	COG5009, MrcA, Membrane carboxypeptidase/penicillin-binding protein [Cell envelope biogenesis, outer membrane]	NA|224aa|up_3|NC_020541.1_3537819_3538491_+	NA	NA|432aa|up_2|NC_020541.1_3538561_3539857_-	PRK05614, gltA, citrate synthase	NA|85aa|up_1|NC_020541.1_3540132_3540387_-	PRK01678, rpmE2, type B 50S ribosomal protein L31	NA|312aa|up_0|NC_020541.1_3540457_3541393_-	cd02649, nuc_hydro_CeIAG, nuc_hydro_CeIAG: Nucleoside hydrolases similar to the inosine-adenosine-guanosine-preferring nucleoside hydrolase from Caenorhabditis elegans	cas3|705aa|down_0|NC_020541.1_3541615_3543730_-	PRK10917, PRK10917, ATP-dependent DNA helicase RecG; Provisional	NA|128aa|down_1|NC_020541.1_3543812_3544196_-	TIGR00004, RutC_family_protein, reactive intermediate/imine deaminase	NA|722aa|down_2|NC_020541.1_3544298_3546464_-	COG0317, SpoT, Guanosine polyphosphate pyrophosphohydrolases/synthetases [Signal transduction mechanisms / Transcription]	NA|97aa|down_3|NC_020541.1_3546590_3546881_-	PRK00392, rpoZ, DNA-directed RNA polymerase subunit omega; Reviewed	NA|277aa|down_4|NC_020541.1_3547080_3547911_+	pfam04333, MlaA, MlaA lipoprotein	NA|102aa|down_5|NC_020541.1_3547986_3548292_-	COG3113, COG3113, Predicted NTP binding protein (contains STAS domain) [General function prediction only]	NA|225aa|down_6|NC_020541.1_3548288_3548963_-	pfam05494, MlaC, MlaC protein	NA|284aa|down_7|NC_020541.1_3549014_3549866_-	TIGR04430, OM_asym_MlaD, outer membrane lipid asymmetry maintenance protein MlaD	NA|259aa|down_8|NC_020541.1_3549900_3550677_-	COG0767, Ttg2B, ABC-type transport system involved in resistance to organic solvents, permease component [Secondary metabolites biosynthesis, transport, and catabolism]	NA|279aa|down_9|NC_020541.1_3550673_3551510_-	COG1127, Ttg2A, ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
GCF_000230695.2_ASM23069v3	NC_020541	Rhodanobacter denitrificans, complete sequence	5	3996604-3996701	5	CRISPRCasFinder	no		WYL,csa3,cas3,DEDDh,DinG,RT,PD-DExK	Orphan	CCGCAGCGAAGAGCTGCGGCCTCA	24	0	0	NA	NA	NA	1	1	Orphan	WYL,csa3,cas3,DEDDh,DinG,RT,PD-DExK	NA|66aa|up_5|NC_020541.1_3987272_3987470_+,NA	NA|312aa|up_9|NC_020541.1_3983300_3984236_-	COG4798, COG4798, Predicted methyltransferase [General function prediction only]	NA|221aa|up_8|NC_020541.1_3984312_3984975_-	cd18722, PIN_NicB-like, LabA-like PIN domain of Pseudomonas putida S16 NicB and related proteins	NA|371aa|up_7|NC_020541.1_3985062_3986175_-	cd08300, alcohol_DH_class_III, class III alcohol dehydrogenases	NA|307aa|up_6|NC_020541.1_3986242_3987163_-	PRK11139, PRK11139, DNA-binding transcriptional activator GcvA; Provisional	NA|66aa|up_5|NC_020541.1_3987272_3987470_+	NA	NA|315aa|up_4|NC_020541.1_3987574_3988519_+	cd19081, AKR_AKR9C1, AKR9C family of aldo-keto reductase (AKR)	NA|341aa|up_3|NC_020541.1_3988607_3989630_-	cd14788, GumN, poorly characterized family of proteins related to gumN pathogenicity factor of Xanthomonas	NA|742aa|up_2|NC_020541.1_3989757_3991983_-	pfam03971, IDH, Monomeric isocitrate dehydrogenase	NA|1118aa|up_1|NC_020541.1_3992126_3995480_+	COG0553, HepA, Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]	NA|105aa|up_0|NC_020541.1_3995898_3996213_+	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|178aa|down_0|NC_020541.1_3996891_3997425_-	PRK11855, PRK11855, dihydrolipoamide acetyltransferase; Reviewed	NA|99aa|down_1|NC_020541.1_3997441_3997738_-	PRK11198, PRK11198, LysM domain/BON superfamily protein; Provisional	NA|1045aa|down_2|NC_020541.1_3997849_4000984_-	PRK10614, PRK10614, multidrug efflux system subunit MdtC; Provisional	NA|1080aa|down_3|NC_020541.1_4001197_4004437_-	PRK10503, PRK10503, MdtB/MuxB family multidrug efflux RND transporter permease subunit	NA|414aa|down_4|NC_020541.1_4004535_4005777_-	PRK11556, PRK11556, MdtA/MuxA family multidrug efflux RND transporter periplasmic adaptor subunit	NA|174aa|down_5|NC_020541.1_4006267_4006789_+	COG3245, CycB, Cytochrome c5 [Energy production and conversion]	NA|198aa|down_6|NC_020541.1_4006982_4007576_-	COG3124, COG3124, Uncharacterized protein conserved in bacteria [Function unknown]	NA|230aa|down_7|NC_020541.1_4007624_4008314_+	COG2945, COG2945, Predicted hydrolase of the alpha/beta superfamily [General function prediction only]	NA|372aa|down_8|NC_020541.1_4008352_4009468_+	COG1485, COG1485, Predicted ATPase [General function prediction only]	NA|602aa|down_9|NC_020541.1_4009552_4011358_+	cd01948, EAL, EAL domain
