assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000227685.2_ASM22768v3	NZ_CP007029	Thioalkalivibrio paradoxus ARh 1, complete genome	1	336349-337253	1,1,1	PILER-CR,CRISPRCasFinder,CRT	no	csb2gr5,cas7,cas8u2,cas3	cas3,csb2gr5,cas7,cas8u2,RT,PD-DExK,cas10d,csc2gr7,csc1gr5,cas4,cas1,cas2,cas6,csx1,cmr6gr7,cmr5gr11,cmr4gr7,cmr3gr5,cas10,cmr1gr7,csm5gr7,csm4gr5,csm3gr7,csm2gr11,DinG,DEDDh,WYL,cas6f,cas7f,cas5f,cas8f,cas3-cas2,csa3	Unclear	GCTTCAATTCCACCCCGGCGTTTGGCCGGGGATCAC,GCTTCAATTCCACCCCGGCGTTTGGCCGGGGATCAC,GCTTCAATTCCACCCCGGCGTTTGGCCGGGGATCAC	36,36,36	0	0	NA	NA	NA:NA:NA	12,12,12	12	Unclear	cas3,csb2gr5,cas7,cas8u2,RT,PD-DExK,cas10d,csc2gr7,csc1gr5,cas4,cas1,cas2,cas6,csx1,cmr6gr7,cmr5gr11,cmr4gr7,cmr3gr5,cas10,cmr1gr7,csm5gr7,csm4gr5,csm3gr7,csm2gr11,DinG,DEDDh,WYL,cas6f,cas7f,cas5f,cas8f,cas3-cas2,csa3	NA|248aa|up_8|NZ_CP007029.1_331065_331809_+,NA|67aa|up_6|NZ_CP007029.1_332867_333068_-,NA|134aa|up_5|NZ_CP007029.1_333289_333691_+,NA|55aa|up_3|NZ_CP007029.1_334694_334859_+,NA|90aa|up_2|NZ_CP007029.1_334855_335125_+,NA|63aa|up_1|NZ_CP007029.1_335141_335330_+,NA|85aa|up_0|NZ_CP007029.1_335326_335581_+,NA	NA|258aa|up_9|NZ_CP007029.1_330228_331002_+	TIGR04176, hypothetical_protein, EPS-associated transcriptional regulator, MarR family	NA|248aa|up_8|NZ_CP007029.1_331065_331809_+	NA	NA|192aa|up_7|NZ_CP007029.1_332285_332861_+	cd00569, HTH_Hin_like, Helix-turn-helix domain of Hin and related proteins	NA|67aa|up_6|NZ_CP007029.1_332867_333068_-	NA	NA|134aa|up_5|NZ_CP007029.1_333289_333691_+	NA	NA|60aa|up_4|NZ_CP007029.1_334033_334213_+	PRK01712, PRK01712, carbon storage regulator CsrA	NA|55aa|up_3|NZ_CP007029.1_334694_334859_+	NA	NA|90aa|up_2|NZ_CP007029.1_334855_335125_+	NA	NA|63aa|up_1|NZ_CP007029.1_335141_335330_+	NA	NA|85aa|up_0|NZ_CP007029.1_335326_335581_+	NA	csb2gr5|473aa|down_0|NZ_CP007029.1_337430_338849_-	TIGR02165, CRISPR-associated_protein_GSU0054_family, CRISPR-associated protein GSU0054/csb2, Dpsyc system	cas7|340aa|down_1|NZ_CP007029.1_338860_339880_-	cd09738, Csb1_I-U, CRISPR/Cas system-associated protein Csb1	cas8u2|231aa|down_2|NZ_CP007029.1_339883_340576_-	TIGR04106, hypothetical_protein_GobsU_11505, CRISPR-associated protein GSU0052/csb3, Dpsyc system	cas3|857aa|down_3|NZ_CP007029.1_340572_343143_-	cd09696, Cas3_I, CRISPR/Cas system-associated protein Cas3; Distinct Cas3 family with HD domain fused to C-termus of Helicase domain	NA|599aa|down_4|NZ_CP007029.1_344020_345817_+	cd01300, YtcJ_like, YtcJ_like metal dependent amidohydrolases	NA|295aa|down_5|NZ_CP007029.1_345813_346698_+	cd03112, CobW-like, cobalamin synthesis protein CobW	NA|379aa|down_6|NZ_CP007029.1_348050_349187_+	TIGR01730, COG0845:_Membrane-fusion_protein, RND family efflux transporter, MFP subunit	NA|1043aa|down_7|NZ_CP007029.1_349183_352312_+	COG0841, AcrB, Cation/multidrug efflux pump [Defense mechanisms]	NA|350aa|down_8|NZ_CP007029.1_352635_353685_-	cd07394, MPP_Vps29, Homo sapiens Vps29 and related proteins, metallophosphatase domain	NA|463aa|down_9|NZ_CP007029.1_353690_355079_-	cd10322, SLC5sbd, Solute carrier 5 family, sodium/glucose transporters and related proteins; solute-binding domain
GCF_000227685.2_ASM22768v3	NZ_CP007029	Thioalkalivibrio paradoxus ARh 1, complete genome	2	1092914-1094479	2,2,2	PILER-CR,CRISPRCasFinder,CRT	no	PD-DExK,cas10d,csc2gr7,csc1gr5,cas3,cas4,cas1,cas2	cas3,csb2gr5,cas7,cas8u2,RT,PD-DExK,cas10d,csc2gr7,csc1gr5,cas4,cas1,cas2,cas6,csx1,cmr6gr7,cmr5gr11,cmr4gr7,cmr3gr5,cas10,cmr1gr7,csm5gr7,csm4gr5,csm3gr7,csm2gr11,DinG,DEDDh,WYL,cas6f,cas7f,cas5f,cas8f,cas3-cas2,csa3	Type I-D	GTCCTGTCACCCCATGAGGGGTTAGGAG,GTCCTGTCACCCCATGAGGGGTTAGGAG,GTCCTGTCACCCCATGAGGGGTTAGGAG	28,28,28	0	0	NA	NA	NA:NA:NA	23,24,24	24	TypeI-D	cas3,csb2gr5,cas7,cas8u2,RT,PD-DExK,cas10d,csc2gr7,csc1gr5,cas4,cas1,cas2,cas6,csx1,cmr6gr7,cmr5gr11,cmr4gr7,cmr3gr5,cas10,cmr1gr7,csm5gr7,csm4gr5,csm3gr7,csm2gr11,DinG,DEDDh,WYL,cas6f,cas7f,cas5f,cas8f,cas3-cas2,csa3	NA|104aa|up_9|NZ_CP007029.1_1082310_1082622_+,NA|306aa|up_8|NZ_CP007029.1_1082678_1083596_-,cas10d|975aa|up_6|NZ_CP007029.1_1084329_1087254_+,csc1gr5|226aa|up_4|NZ_CP007029.1_1088287_1088965_+,NA|331aa|down_1|NZ_CP007029.1_1099064_1100057_-,NA|280aa|down_2|NZ_CP007029.1_1101436_1102276_+,NA|220aa|down_3|NZ_CP007029.1_1102460_1103120_+	NA|104aa|up_9|NZ_CP007029.1_1082310_1082622_+	NA	NA|306aa|up_8|NZ_CP007029.1_1082678_1083596_-	NA	NA|237aa|up_7|NZ_CP007029.1_1083611_1084322_+	cd09652, Cas6-I-III, CRISPR/Cas system-associated RAMP superfamily protein Cas6	cas10d|975aa|up_6|NZ_CP007029.1_1084329_1087254_+	NA	csc2gr7|336aa|up_5|NZ_CP007029.1_1087280_1088288_+	TIGR03157, cas_Csc2, CRISPR type I-D/CYANO-associated protein Csc2	csc1gr5|226aa|up_4|NZ_CP007029.1_1088287_1088965_+	NA	cas3|666aa|up_3|NZ_CP007029.1_1088979_1090977_+	smart00487, DEXDc, DEAD-like helicases superfamily	cas4|189aa|up_2|NZ_CP007029.1_1090954_1091521_+	pfam01930, Cas_Cas4, Domain of unknown function DUF83	cas1|325aa|up_1|NZ_CP007029.1_1091520_1092495_+	cd09634, Cas1_I-II-III, CRISPR/Cas system-associated protein Cas1	cas2|106aa|up_0|NZ_CP007029.1_1092476_1092794_+	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	NA|570aa|down_0|NZ_CP007029.1_1096856_1098566_-	pfam00144, Beta-lactamase, Beta-lactamase	NA|331aa|down_1|NZ_CP007029.1_1099064_1100057_-	NA	NA|280aa|down_2|NZ_CP007029.1_1101436_1102276_+	NA	NA|220aa|down_3|NZ_CP007029.1_1102460_1103120_+	NA	NA|112aa|down_4|NZ_CP007029.1_1103820_1104156_-	pfam02641, DUF190, Uncharacterized ACR, COG1993	NA|141aa|down_5|NZ_CP007029.1_1104166_1104589_-	PRK14206, PRK14206, fluoride efflux transporter CrcB	NA|130aa|down_6|NZ_CP007029.1_1104558_1104948_-	PRK14203, PRK14203, fluoride efflux transporter CrcB	NA|470aa|down_7|NZ_CP007029.1_1105062_1106472_+	pfam00144, Beta-lactamase, Beta-lactamase	NA|255aa|down_8|NZ_CP007029.1_1106547_1107312_-	pfam01061, ABC2_membrane, ABC-2 type transporter	NA|321aa|down_9|NZ_CP007029.1_1107308_1108271_-	TIGR01188, drrA, daunorubicin resistance ABC transporter ATP-binding subunit
GCF_000227685.2_ASM22768v3	NZ_CP007029	Thioalkalivibrio paradoxus ARh 1, complete genome	3	1095507-1096752	3,3,3	CRT,PILER-CR,CRISPRCasFinder	no	cas10d,csc2gr7,csc1gr5,cas3,cas4,cas1,cas2	cas3,csb2gr5,cas7,cas8u2,RT,PD-DExK,cas10d,csc2gr7,csc1gr5,cas4,cas1,cas2,cas6,csx1,cmr6gr7,cmr5gr11,cmr4gr7,cmr3gr5,cas10,cmr1gr7,csm5gr7,csm4gr5,csm3gr7,csm2gr11,DinG,DEDDh,WYL,cas6f,cas7f,cas5f,cas8f,cas3-cas2,csa3	Type I-D	GTCCTGTCACCCCATGAGGGGTTAGGAG,GTCCTGTCACCCCATGAGGGGTTAGGAG,GTCCTGTCACCCCATGAGGGGTTAGGAG	28,28,28	0	0	NA	NA	NA:NA:NA	19,18,18	19	TypeI-D	cas3,csb2gr5,cas7,cas8u2,RT,PD-DExK,cas10d,csc2gr7,csc1gr5,cas4,cas1,cas2,cas6,csx1,cmr6gr7,cmr5gr11,cmr4gr7,cmr3gr5,cas10,cmr1gr7,csm5gr7,csm4gr5,csm3gr7,csm2gr11,DinG,DEDDh,WYL,cas6f,cas7f,cas5f,cas8f,cas3-cas2,csa3	NA|104aa|up_9|NZ_CP007029.1_1082310_1082622_+,NA|306aa|up_8|NZ_CP007029.1_1082678_1083596_-,cas10d|975aa|up_6|NZ_CP007029.1_1084329_1087254_+,csc1gr5|226aa|up_4|NZ_CP007029.1_1088287_1088965_+,NA|331aa|down_1|NZ_CP007029.1_1099064_1100057_-,NA|280aa|down_2|NZ_CP007029.1_1101436_1102276_+,NA|220aa|down_3|NZ_CP007029.1_1102460_1103120_+	NA|104aa|up_9|NZ_CP007029.1_1082310_1082622_+	NA	NA|306aa|up_8|NZ_CP007029.1_1082678_1083596_-	NA	NA|237aa|up_7|NZ_CP007029.1_1083611_1084322_+	cd09652, Cas6-I-III, CRISPR/Cas system-associated RAMP superfamily protein Cas6	cas10d|975aa|up_6|NZ_CP007029.1_1084329_1087254_+	NA	csc2gr7|336aa|up_5|NZ_CP007029.1_1087280_1088288_+	TIGR03157, cas_Csc2, CRISPR type I-D/CYANO-associated protein Csc2	csc1gr5|226aa|up_4|NZ_CP007029.1_1088287_1088965_+	NA	cas3|666aa|up_3|NZ_CP007029.1_1088979_1090977_+	smart00487, DEXDc, DEAD-like helicases superfamily	cas4|189aa|up_2|NZ_CP007029.1_1090954_1091521_+	pfam01930, Cas_Cas4, Domain of unknown function DUF83	cas1|325aa|up_1|NZ_CP007029.1_1091520_1092495_+	cd09634, Cas1_I-II-III, CRISPR/Cas system-associated protein Cas1	cas2|106aa|up_0|NZ_CP007029.1_1092476_1092794_+	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	NA|570aa|down_0|NZ_CP007029.1_1096856_1098566_-	pfam00144, Beta-lactamase, Beta-lactamase	NA|331aa|down_1|NZ_CP007029.1_1099064_1100057_-	NA	NA|280aa|down_2|NZ_CP007029.1_1101436_1102276_+	NA	NA|220aa|down_3|NZ_CP007029.1_1102460_1103120_+	NA	NA|112aa|down_4|NZ_CP007029.1_1103820_1104156_-	pfam02641, DUF190, Uncharacterized ACR, COG1993	NA|141aa|down_5|NZ_CP007029.1_1104166_1104589_-	PRK14206, PRK14206, fluoride efflux transporter CrcB	NA|130aa|down_6|NZ_CP007029.1_1104558_1104948_-	PRK14203, PRK14203, fluoride efflux transporter CrcB	NA|470aa|down_7|NZ_CP007029.1_1105062_1106472_+	pfam00144, Beta-lactamase, Beta-lactamase	NA|255aa|down_8|NZ_CP007029.1_1106547_1107312_-	pfam01061, ABC2_membrane, ABC-2 type transporter	NA|321aa|down_9|NZ_CP007029.1_1107308_1108271_-	TIGR01188, drrA, daunorubicin resistance ABC transporter ATP-binding subunit
GCF_000227685.2_ASM22768v3	NZ_CP007029	Thioalkalivibrio paradoxus ARh 1, complete genome	4	1238181-1238320	4	CRISPRCasFinder	no		cas3,csb2gr5,cas7,cas8u2,RT,PD-DExK,cas10d,csc2gr7,csc1gr5,cas4,cas1,cas2,cas6,csx1,cmr6gr7,cmr5gr11,cmr4gr7,cmr3gr5,cas10,cmr1gr7,csm5gr7,csm4gr5,csm3gr7,csm2gr11,DinG,DEDDh,WYL,cas6f,cas7f,cas5f,cas8f,cas3-cas2,csa3	Orphan	CCCTCGCGATGACGGTGGGGGCTTTGTGGCCGTCACTGCGAGCCC	45	0	0	NA	NA	NA	1	1	Orphan	cas3,csb2gr5,cas7,cas8u2,RT,PD-DExK,cas10d,csc2gr7,csc1gr5,cas4,cas1,cas2,cas6,csx1,cmr6gr7,cmr5gr11,cmr4gr7,cmr3gr5,cas10,cmr1gr7,csm5gr7,csm4gr5,csm3gr7,csm2gr11,DinG,DEDDh,WYL,cas6f,cas7f,cas5f,cas8f,cas3-cas2,csa3	NA|77aa|up_7|NZ_CP007029.1_1235035_1235266_-,NA|72aa|up_4|NZ_CP007029.1_1236320_1236536_+,NA|81aa|down_8|NZ_CP007029.1_1243386_1243629_-	NA|299aa|up_9|NZ_CP007029.1_1232686_1233583_+	pfam08843, AbiEii, Nucleotidyl transferase AbiEii toxin, Type IV TA system	NA|144aa|up_8|NZ_CP007029.1_1234617_1235049_-	cd18692, PIN_VapC-like, uncharacterized subfamily of the VapC-like nuclease family of the PIN domain superfamily	NA|77aa|up_7|NZ_CP007029.1_1235035_1235266_-	NA	NA|100aa|up_6|NZ_CP007029.1_1235515_1235815_+	pfam08681, DUF1778, Protein of unknown function (DUF1778)	NA|172aa|up_5|NZ_CP007029.1_1235759_1236275_+	pfam13508, Acetyltransf_7, Acetyltransferase (GNAT) domain	NA|72aa|up_4|NZ_CP007029.1_1236320_1236536_+	NA	NA|92aa|up_3|NZ_CP007029.1_1236915_1237191_+	pfam04365, BrnT_toxin, Ribonuclease toxin, BrnT, of type II toxin-antitoxin system	NA|92aa|up_2|NZ_CP007029.1_1237147_1237423_+	pfam14384, BrnA_antitoxin, BrnA antitoxin of type II toxin-antitoxin system	NA|89aa|up_1|NZ_CP007029.1_1237525_1237792_-	pfam12441, CopG_antitoxin, CopG antitoxin of type II toxin-antitoxin system	NA|105aa|up_0|NZ_CP007029.1_1237763_1238078_-	pfam04365, BrnT_toxin, Ribonuclease toxin, BrnT, of type II toxin-antitoxin system	NA|258aa|down_0|NZ_CP007029.1_1238453_1239227_+	PRK10494, PRK10494, envelope biogenesis factor ElyC	NA|147aa|down_1|NZ_CP007029.1_1239317_1239758_-	COG1569, COG1569, Predicted nucleic acid-binding protein, contains PIN domain [General function prediction only]	NA|74aa|down_2|NZ_CP007029.1_1239739_1239961_-	smart00966, SpoVT_AbrB, SpoVT / AbrB like domain	NA|81aa|down_3|NZ_CP007029.1_1240130_1240373_+	PRK10494, PRK10494, envelope biogenesis factor ElyC	NA|107aa|down_4|NZ_CP007029.1_1240682_1241003_-	COG2944, COG2944, Predicted transcriptional regulator [Transcription]	NA|129aa|down_5|NZ_CP007029.1_1240983_1241370_-	pfam06296, RelE, RelE toxin of RelE / RelB toxin-antitoxin system	NA|145aa|down_6|NZ_CP007029.1_1242174_1242609_+	cd18692, PIN_VapC-like, uncharacterized subfamily of the VapC-like nuclease family of the PIN domain superfamily	NA|164aa|down_7|NZ_CP007029.1_1242898_1243390_-	pfam13470, PIN_3, PIN domain	NA|81aa|down_8|NZ_CP007029.1_1243386_1243629_-	NA	NA|114aa|down_9|NZ_CP007029.1_1243754_1244096_+	PRK10494, PRK10494, envelope biogenesis factor ElyC
GCF_000227685.2_ASM22768v3	NZ_CP007029	Thioalkalivibrio paradoxus ARh 1, complete genome	5	1270339-1270480	5	CRISPRCasFinder	no		cas3,csb2gr5,cas7,cas8u2,RT,PD-DExK,cas10d,csc2gr7,csc1gr5,cas4,cas1,cas2,cas6,csx1,cmr6gr7,cmr5gr11,cmr4gr7,cmr3gr5,cas10,cmr1gr7,csm5gr7,csm4gr5,csm3gr7,csm2gr11,DinG,DEDDh,WYL,cas6f,cas7f,cas5f,cas8f,cas3-cas2,csa3	Orphan	ATGGGTAGGGCGGAAGAGGCCGAAGGCCGTCATCCGCCGTTCCCA	45	0	0	NA	NA	NA	1	1	Orphan	cas3,csb2gr5,cas7,cas8u2,RT,PD-DExK,cas10d,csc2gr7,csc1gr5,cas4,cas1,cas2,cas6,csx1,cmr6gr7,cmr5gr11,cmr4gr7,cmr3gr5,cas10,cmr1gr7,csm5gr7,csm4gr5,csm3gr7,csm2gr11,DinG,DEDDh,WYL,cas6f,cas7f,cas5f,cas8f,cas3-cas2,csa3	NA,NA	NA|145aa|up_9|NZ_CP007029.1_1254978_1255413_-	pfam04365, BrnT_toxin, Ribonuclease toxin, BrnT, of type II toxin-antitoxin system	NA|356aa|up_8|NZ_CP007029.1_1256281_1257349_+	PRK00147, queA, S-adenosylmethionine:tRNA ribosyltransferase-isomerase; Provisional	NA|372aa|up_7|NZ_CP007029.1_1257338_1258454_+	PRK00112, tgt, queuine tRNA-ribosyltransferase; Provisional	NA|110aa|up_6|NZ_CP007029.1_1258625_1258955_+	PRK05585, yajC, preprotein translocase subunit YajC; Validated	NA|622aa|up_5|NZ_CP007029.1_1258964_1260830_+	PRK05812, secD, preprotein translocase subunit SecD; Reviewed	NA|316aa|up_4|NZ_CP007029.1_1260845_1261793_+	PRK13022, secF, protein translocase subunit SecF	NA|269aa|up_3|NZ_CP007029.1_1261817_1262624_-	cd01639, IMPase, IMPase, inositol monophosphatase and related domains	NA|1281aa|up_2|NZ_CP007029.1_1263059_1266902_-	pfam12447, DUF3683, Protein of unknown function (DUF3683)	NA|600aa|up_1|NZ_CP007029.1_1267005_1268805_-	pfam06315, AceK, Isocitrate dehydrogenase kinase/phosphatase (AceK)	NA|441aa|up_0|NZ_CP007029.1_1268966_1270289_+	PRK15063, PRK15063, isocitrate lyase; Provisional	NA|198aa|down_0|NZ_CP007029.1_1270567_1271161_+	cd06260, DUF820, Domain of unknown function (DUF820)	NA|194aa|down_1|NZ_CP007029.1_1271243_1271825_+	PRK12335, PRK12335, tellurite resistance protein TehB; Provisional	NA|234aa|down_2|NZ_CP007029.1_1272125_1272827_-	pfam13489, Methyltransf_23, Methyltransferase domain	NA|407aa|down_3|NZ_CP007029.1_1272842_1274063_-	TIGR03440, egtB_TIGR03440, ergothioneine biosynthesis protein EgtB	NA|315aa|down_4|NZ_CP007029.1_1274309_1275254_-	cd05292, LDH_2, A subgroup of L-lactate dehydrogenases	NA|731aa|down_5|NZ_CP007029.1_1275546_1277739_-	PRK02999, PRK02999, malate synthase G; Provisional	NA|416aa|down_6|NZ_CP007029.1_1277855_1279103_-	PRK11274, glcF, glycolate oxidase subunit GlcF	NA|361aa|down_7|NZ_CP007029.1_1279105_1280188_-	PRK11282, glcE, glycolate oxidase FAD binding subunit; Provisional	NA|500aa|down_8|NZ_CP007029.1_1280337_1281837_-	PRK11230, PRK11230, glycolate oxidase subunit GlcD; Provisional	NA|218aa|down_9|NZ_CP007029.1_1282157_1282811_+	cd05483, retropepsin_like_bacteria, Bacterial aspartate proteases, retropepsin-like protease family
GCF_000227685.2_ASM22768v3	NZ_CP007029	Thioalkalivibrio paradoxus ARh 1, complete genome	6	1760369-1760463	6	CRISPRCasFinder	no		cas3,csb2gr5,cas7,cas8u2,RT,PD-DExK,cas10d,csc2gr7,csc1gr5,cas4,cas1,cas2,cas6,csx1,cmr6gr7,cmr5gr11,cmr4gr7,cmr3gr5,cas10,cmr1gr7,csm5gr7,csm4gr5,csm3gr7,csm2gr11,DinG,DEDDh,WYL,cas6f,cas7f,cas5f,cas8f,cas3-cas2,csa3	Orphan	GGCGGATGACGCTTCGCTTTTCCGCCCTACGG	32	0	0	NA	NA	NA	1	1	Orphan	cas3,csb2gr5,cas7,cas8u2,RT,PD-DExK,cas10d,csc2gr7,csc1gr5,cas4,cas1,cas2,cas6,csx1,cmr6gr7,cmr5gr11,cmr4gr7,cmr3gr5,cas10,cmr1gr7,csm5gr7,csm4gr5,csm3gr7,csm2gr11,DinG,DEDDh,WYL,cas6f,cas7f,cas5f,cas8f,cas3-cas2,csa3	NA|368aa|up_4|NZ_CP007029.1_1755424_1756528_-,NA|63aa|down_4|NZ_CP007029.1_1765948_1766137_-	NA|199aa|up_9|NZ_CP007029.1_1746436_1747033_+	cd06260, DUF820, Domain of unknown function (DUF820)	NA|1083aa|up_8|NZ_CP007029.1_1747351_1750600_+	COG0553, HepA, Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]	NA|108aa|up_7|NZ_CP007029.1_1750898_1751222_-	pfam18765, Polbeta, Polymerase beta, Nucleotidyltransferase	NA|139aa|up_6|NZ_CP007029.1_1751381_1751798_-	pfam08780, NTase_sub_bind, Nucleotidyltransferase substrate binding protein like	NA|88aa|up_5|NZ_CP007029.1_1752262_1752526_+	smart00834, CxxC_CXXC_SSSS, Putative regulatory protein	NA|368aa|up_4|NZ_CP007029.1_1755424_1756528_-	NA	NA|140aa|up_3|NZ_CP007029.1_1756696_1757116_-	PRK09907, PRK09907, endoribonuclease MazF	NA|92aa|up_2|NZ_CP007029.1_1757069_1757345_-	COG2336, MazE, Growth regulator [Signal transduction mechanisms]	NA|141aa|up_1|NZ_CP007029.1_1757662_1758085_-	PRK10254, PRK10254, proofreading thioesterase EntH	NA|454aa|up_0|NZ_CP007029.1_1758096_1759458_-	PRK09029, PRK09029, O-succinylbenzoic acid--CoA ligase; Provisional	NA|286aa|down_0|NZ_CP007029.1_1760746_1761604_-	PRK07396, PRK07396, dihydroxynaphthoic acid synthetase; Validated	NA|262aa|down_1|NZ_CP007029.1_1761603_1762389_-	TIGR03695, menH_SHCHC, 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase	NA|612aa|down_2|NZ_CP007029.1_1762412_1764248_-	PRK07449, PRK07449, 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase; Validated	NA|464aa|down_3|NZ_CP007029.1_1764241_1765633_-	TIGR00543, Salicylate_biosynthesis_isochorismate_synthase, isochorismate synthases	NA|63aa|down_4|NZ_CP007029.1_1765948_1766137_-	NA	NA|645aa|down_5|NZ_CP007029.1_1766357_1768292_-	COG4548, NorD, Nitric oxide reductase activation protein [Inorganic ion transport and metabolism]	NA|273aa|down_6|NZ_CP007029.1_1768297_1769116_-	pfam07728, AAA_5, AAA domain (dynein-related subfamily)	NA|449aa|down_7|NZ_CP007029.1_1769125_1770472_-	COG3256, NorB, Nitric oxide reductase large subunit [Inorganic ion transport and metabolism]	NA|151aa|down_8|NZ_CP007029.1_1770487_1770940_-	pfam00034, Cytochrom_C, Cytochrome c	NA|206aa|down_9|NZ_CP007029.1_1771205_1771823_-	pfam05573, NosL, NosL
GCF_000227685.2_ASM22768v3	NZ_CP007029	Thioalkalivibrio paradoxus ARh 1, complete genome	7	1958603-1959620	7,4,4	CRISPRCasFinder,CRT,PILER-CR	no	cas2,cas1,cas6,csx1,cmr6gr7,cmr5gr11,cmr4gr7,cmr3gr5,cas10,cmr1gr7	cas3,csb2gr5,cas7,cas8u2,RT,PD-DExK,cas10d,csc2gr7,csc1gr5,cas4,cas1,cas2,cas6,csx1,cmr6gr7,cmr5gr11,cmr4gr7,cmr3gr5,cas10,cmr1gr7,csm5gr7,csm4gr5,csm3gr7,csm2gr11,DinG,DEDDh,WYL,cas6f,cas7f,cas5f,cas8f,cas3-cas2,csa3	Type III-A,Type III-D,Type III-C,Type III-B	GTCTTAATCCCTTCTTCATCAGGGAAGTCGTTCTGAC,GTCTTAATCCCTTCTTCATCAGGGAAGTCGTTCTGAC,GTCTTAATCCCTTCTTCATCAGGGAAGTCGTTCTGAC	37,37,37	0	0	NA	NA	NA:NA:NA	14,14,13	14	TypeIII-D,TypeIII-B,TypeIII-C,TypeIII-A	cas3,csb2gr5,cas7,cas8u2,RT,PD-DExK,cas10d,csc2gr7,csc1gr5,cas4,cas1,cas2,cas6,csx1,cmr6gr7,cmr5gr11,cmr4gr7,cmr3gr5,cas10,cmr1gr7,csm5gr7,csm4gr5,csm3gr7,csm2gr11,DinG,DEDDh,WYL,cas6f,cas7f,cas5f,cas8f,cas3-cas2,csa3	NA,NA|101aa|down_5|NZ_CP007029.1_1963283_1963586_+	NA|132aa|up_9|NZ_CP007029.1_1943705_1944101_-	cd06464, ACD_sHsps-like, Alpha-crystallin domain (ACD) of alpha-crystallin-type small(s) heat shock proteins (Hsps)	NA|146aa|up_8|NZ_CP007029.1_1944118_1944556_-	COG0071, IbpA, Molecular chaperone (small heat shock protein) [Posttranslational modification, protein turnover, chaperones]	NA|318aa|up_7|NZ_CP007029.1_1944717_1945671_+	PRK10266, PRK10266, curved DNA-binding protein	NA|103aa|up_6|NZ_CP007029.1_1945673_1945982_+	pfam13591, MerR_2, MerR HTH family regulatory protein	NA|831aa|up_5|NZ_CP007029.1_1946235_1948728_+	pfam00563, EAL, EAL domain	NA|515aa|up_4|NZ_CP007029.1_1948985_1950530_+	pfam09660, DUF2397, Protein of unknown function (DUF2397)	NA|418aa|up_3|NZ_CP007029.1_1950529_1951783_+	pfam09661, DUF2398, Protein of unknown function (DUF2398)	NA|1376aa|up_2|NZ_CP007029.1_1951918_1956046_+	TIGR02680, conserved_hypothetical_protein, TIGR02680 family protein	NA|421aa|up_1|NZ_CP007029.1_1956042_1957305_+	TIGR02679, conserved_hypothetical_protein, TIGR02679 family protein	NA|305aa|up_0|NZ_CP007029.1_1957416_1958331_-	cd00519, Lipase_3, Lipase (class 3)	cas2|110aa|down_0|NZ_CP007029.1_1959742_1960072_-	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	NA|247aa|down_1|NZ_CP007029.1_1960062_1960803_-	pfam01867, Cas_Cas1, CRISPR associated protein Cas1	cas1|330aa|down_2|NZ_CP007029.1_1960871_1961861_-	pfam01867, Cas_Cas1, CRISPR associated protein Cas1	cas2|95aa|down_3|NZ_CP007029.1_1961866_1962151_-	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	cas6|319aa|down_4|NZ_CP007029.1_1962238_1963195_-	cd09760, Cas6_III, CRISPR/Cas system-associated RAMP superfamily protein Cas6	NA|101aa|down_5|NZ_CP007029.1_1963283_1963586_+	NA	csx1|504aa|down_6|NZ_CP007029.1_1963679_1965191_-	pfam09652, Cas_VVA1548, Putative CRISPR-associated protein (Cas_VVA1548)	csx1|402aa|down_7|NZ_CP007029.1_1965372_1966578_-	pfam09002, DUF1887, Domain of unknown function (DUF1887)	cmr6gr7|380aa|down_8|NZ_CP007029.1_1966739_1967879_-	cd09661, Cmr6_III-B, CRISPR/Cas system-associated RAMP superfamily protein Cmr6	cmr5gr11|144aa|down_9|NZ_CP007029.1_1967875_1968307_-	pfam09701, Cas_Cmr5, CRISPR-associated protein (Cas_Cmr5)
GCF_000227685.2_ASM22768v3	NZ_CP007029	Thioalkalivibrio paradoxus ARh 1, complete genome	8	1977688-1979124	5,8,5,6	PILER-CR,CRISPRCasFinder,CRT,PILER-CR	no	cas2,cas1,cas6,csx1,cmr6gr7,cmr5gr11,cmr4gr7,cmr3gr5,cas10,cmr1gr7,csm5gr7,csm4gr5,csm3gr7,csm2gr11	cas3,csb2gr5,cas7,cas8u2,RT,PD-DExK,cas10d,csc2gr7,csc1gr5,cas4,cas1,cas2,cas6,csx1,cmr6gr7,cmr5gr11,cmr4gr7,cmr3gr5,cas10,cmr1gr7,csm5gr7,csm4gr5,csm3gr7,csm2gr11,DinG,DEDDh,WYL,cas6f,cas7f,cas5f,cas8f,cas3-cas2,csa3	Type III-D,Type III-B, Type III-B?,Type III-C,Type III-A	GTCTTAATCCCTTCTTCATCAGGGAAGTCGTTCTGAC,GTCTTAATCCCTTCTTCATCAGGGAAGTCGTTCTGAC,GTCTTAATCCCTTCTTCATCAGGGAAGTCGTTCTGAC,GTCTTAATCCCTTCTTCATCAGGGAAGTCGTTCTGAC	37,37,37,37	0	0	NA	NA	NA:NA:NA:NA	17,20,20,17	20	TypeIII-D,TypeIII-B,TypeIII-B?,TypeIII-C,TypeIII-A	cas3,csb2gr5,cas7,cas8u2,RT,PD-DExK,cas10d,csc2gr7,csc1gr5,cas4,cas1,cas2,cas6,csx1,cmr6gr7,cmr5gr11,cmr4gr7,cmr3gr5,cas10,cmr1gr7,csm5gr7,csm4gr5,csm3gr7,csm2gr11,DinG,DEDDh,WYL,cas6f,cas7f,cas5f,cas8f,cas3-cas2,csa3	NA|204aa|up_0|NZ_CP007029.1_1976898_1977510_-,NA	cmr5gr11|144aa|up_9|NZ_CP007029.1_1967875_1968307_-	pfam09701, Cas_Cmr5, CRISPR-associated protein (Cas_Cmr5)	cmr4gr7|294aa|up_8|NZ_CP007029.1_1968303_1969185_-	TIGR02580, putative_CRISPR-associated_protein, CRISPR type III-B/RAMP module RAMP protein Cmr4	cmr3gr5|442aa|up_7|NZ_CP007029.1_1969216_1970542_-	cd09748, Cmr3_III-B, CRISPR/Cas system-associated RAMP superfamily protein Cmr3	cas10|625aa|up_6|NZ_CP007029.1_1970541_1972416_-	cd09679, Cas10_III, CRISPR/Cas system-associated protein Cas10	cmr1gr7|419aa|up_5|NZ_CP007029.1_1972415_1973672_-	COG1367, COG1367, CRISPR system related protein, RAMP superfamily [Defense mechanisms]	csx1|379aa|up_4|NZ_CP007029.1_1973854_1974991_-	cd09741, Csx1_III-U, CRISPR/Cas system-associated protein Csx1	cas2|135aa|up_3|NZ_CP007029.1_1975227_1975632_-	pfam09827, CRISPR_Cas2, CRISPR associated protein Cas2	cas1|251aa|up_2|NZ_CP007029.1_1975597_1976350_-	pfam01867, Cas_Cas1, CRISPR associated protein Cas1	cas2|95aa|up_1|NZ_CP007029.1_1976538_1976823_-	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	NA|204aa|up_0|NZ_CP007029.1_1976898_1977510_-	NA	csm5gr7|548aa|down_0|NZ_CP007029.1_1981863_1983507_-	COG1332, COG1332, CRISPR system related protein, RAMP superfamily [Defense mechanisms]	csm4gr5|325aa|down_1|NZ_CP007029.1_1983503_1984478_-	TIGR01903, Hypothetical_protein	csm3gr7|237aa|down_2|NZ_CP007029.1_1984491_1985202_-	cd09684, Csm3_III-A, CRISPR/Cas system-associated RAMP superfamily protein Csm3	csm2gr11|167aa|down_3|NZ_CP007029.1_1985223_1985724_-	pfam03750, Csm2_III-A, Csm2 Type III-A	cas10|899aa|down_4|NZ_CP007029.1_1985735_1988432_-	cd09680, Cas10_III, CRISPR/Cas system-associated protein Cas10	NA|60aa|down_5|NZ_CP007029.1_1988715_1988895_+	pfam02599, CsrA, Global regulator protein family	NA|74aa|down_6|NZ_CP007029.1_1989181_1989403_-	PRK01712, PRK01712, carbon storage regulator CsrA	NA|414aa|down_7|NZ_CP007029.1_1989470_1990712_-	PRK06635, PRK06635, aspartate kinase; Reviewed	NA|872aa|down_8|NZ_CP007029.1_1991089_1993705_-	PRK00252, alaS, alanyl-tRNA synthetase; Reviewed	NA|164aa|down_9|NZ_CP007029.1_1993768_1994260_-	PRK00117, recX, recombination regulator RecX; Reviewed
GCF_000227685.2_ASM22768v3	NZ_CP007029	Thioalkalivibrio paradoxus ARh 1, complete genome	9	1980770-1981651	6,7,9	CRT,PILER-CR,CRISPRCasFinder	no	cas1,cas2,cas6,csx1,cmr6gr7,cmr5gr11,cmr4gr7,cmr3gr5,cas10,cmr1gr7,csm5gr7,csm4gr5,csm3gr7,csm2gr11	cas3,csb2gr5,cas7,cas8u2,RT,PD-DExK,cas10d,csc2gr7,csc1gr5,cas4,cas1,cas2,cas6,csx1,cmr6gr7,cmr5gr11,cmr4gr7,cmr3gr5,cas10,cmr1gr7,csm5gr7,csm4gr5,csm3gr7,csm2gr11,DinG,DEDDh,WYL,cas6f,cas7f,cas5f,cas8f,cas3-cas2,csa3	Type III-D,Type III-B, Type III-B?,Type III-C,Type III-A	GTCTTAATCCCTTCTTCATCAGGGAAGTCGTTCTGAC,GTCTTAATCCCTTCTTCATCAGGGAAGTCGTTCTGAC,GTCTTAATCCCTTCTTCATCAGGGAAGTCGTTCTGAC	37,37,37	0	0	NA	NA	NA:NA:NA	12,11,11	12	TypeIII-D,TypeIII-B,TypeIII-B?,TypeIII-C,TypeIII-A	cas3,csb2gr5,cas7,cas8u2,RT,PD-DExK,cas10d,csc2gr7,csc1gr5,cas4,cas1,cas2,cas6,csx1,cmr6gr7,cmr5gr11,cmr4gr7,cmr3gr5,cas10,cmr1gr7,csm5gr7,csm4gr5,csm3gr7,csm2gr11,DinG,DEDDh,WYL,cas6f,cas7f,cas5f,cas8f,cas3-cas2,csa3	NA|204aa|up_0|NZ_CP007029.1_1976898_1977510_-,NA	cmr5gr11|144aa|up_9|NZ_CP007029.1_1967875_1968307_-	pfam09701, Cas_Cmr5, CRISPR-associated protein (Cas_Cmr5)	cmr4gr7|294aa|up_8|NZ_CP007029.1_1968303_1969185_-	TIGR02580, putative_CRISPR-associated_protein, CRISPR type III-B/RAMP module RAMP protein Cmr4	cmr3gr5|442aa|up_7|NZ_CP007029.1_1969216_1970542_-	cd09748, Cmr3_III-B, CRISPR/Cas system-associated RAMP superfamily protein Cmr3	cas10|625aa|up_6|NZ_CP007029.1_1970541_1972416_-	cd09679, Cas10_III, CRISPR/Cas system-associated protein Cas10	cmr1gr7|419aa|up_5|NZ_CP007029.1_1972415_1973672_-	COG1367, COG1367, CRISPR system related protein, RAMP superfamily [Defense mechanisms]	csx1|379aa|up_4|NZ_CP007029.1_1973854_1974991_-	cd09741, Csx1_III-U, CRISPR/Cas system-associated protein Csx1	cas2|135aa|up_3|NZ_CP007029.1_1975227_1975632_-	pfam09827, CRISPR_Cas2, CRISPR associated protein Cas2	cas1|251aa|up_2|NZ_CP007029.1_1975597_1976350_-	pfam01867, Cas_Cas1, CRISPR associated protein Cas1	cas2|95aa|up_1|NZ_CP007029.1_1976538_1976823_-	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	NA|204aa|up_0|NZ_CP007029.1_1976898_1977510_-	NA	csm5gr7|548aa|down_0|NZ_CP007029.1_1981863_1983507_-	COG1332, COG1332, CRISPR system related protein, RAMP superfamily [Defense mechanisms]	csm4gr5|325aa|down_1|NZ_CP007029.1_1983503_1984478_-	TIGR01903, Hypothetical_protein	csm3gr7|237aa|down_2|NZ_CP007029.1_1984491_1985202_-	cd09684, Csm3_III-A, CRISPR/Cas system-associated RAMP superfamily protein Csm3	csm2gr11|167aa|down_3|NZ_CP007029.1_1985223_1985724_-	pfam03750, Csm2_III-A, Csm2 Type III-A	cas10|899aa|down_4|NZ_CP007029.1_1985735_1988432_-	cd09680, Cas10_III, CRISPR/Cas system-associated protein Cas10	NA|60aa|down_5|NZ_CP007029.1_1988715_1988895_+	pfam02599, CsrA, Global regulator protein family	NA|74aa|down_6|NZ_CP007029.1_1989181_1989403_-	PRK01712, PRK01712, carbon storage regulator CsrA	NA|414aa|down_7|NZ_CP007029.1_1989470_1990712_-	PRK06635, PRK06635, aspartate kinase; Reviewed	NA|872aa|down_8|NZ_CP007029.1_1991089_1993705_-	PRK00252, alaS, alanyl-tRNA synthetase; Reviewed	NA|164aa|down_9|NZ_CP007029.1_1993768_1994260_-	PRK00117, recX, recombination regulator RecX; Reviewed
GCF_000227685.2_ASM22768v3	NZ_CP007029	Thioalkalivibrio paradoxus ARh 1, complete genome	10	2370157-2370263	10	CRISPRCasFinder	no		cas3,csb2gr5,cas7,cas8u2,RT,PD-DExK,cas10d,csc2gr7,csc1gr5,cas4,cas1,cas2,cas6,csx1,cmr6gr7,cmr5gr11,cmr4gr7,cmr3gr5,cas10,cmr1gr7,csm5gr7,csm4gr5,csm3gr7,csm2gr11,DinG,DEDDh,WYL,cas6f,cas7f,cas5f,cas8f,cas3-cas2,csa3	Orphan	CGTCTTGGATTTCCGCGGACAGTACACCCAAATAACC	37	0	0	NA	NA	NA	1	1	Orphan	cas3,csb2gr5,cas7,cas8u2,RT,PD-DExK,cas10d,csc2gr7,csc1gr5,cas4,cas1,cas2,cas6,csx1,cmr6gr7,cmr5gr11,cmr4gr7,cmr3gr5,cas10,cmr1gr7,csm5gr7,csm4gr5,csm3gr7,csm2gr11,DinG,DEDDh,WYL,cas6f,cas7f,cas5f,cas8f,cas3-cas2,csa3	NA|205aa|up_5|NZ_CP007029.1_2362259_2362874_-,NA|82aa|down_0|NZ_CP007029.1_2370329_2370575_+,NA|63aa|down_9|NZ_CP007029.1_2381632_2381821_-	NA|239aa|up_9|NZ_CP007029.1_2358831_2359548_+	PRK10396, PRK10396, hypothetical protein; Provisional	NA|96aa|up_8|NZ_CP007029.1_2359761_2360049_-	TIGR01176, Fumarate_reductase_flavoprotein_subunit	NA|226aa|up_7|NZ_CP007029.1_2360429_2361107_+	pfam09335, VTT, VMP1, TMEM41, and TVP38 (VTT) domain	NA|352aa|up_6|NZ_CP007029.1_2361152_2362208_-	pfam01595, DUF21, Domain of unknown function DUF21	NA|205aa|up_5|NZ_CP007029.1_2362259_2362874_-	NA	NA|266aa|up_4|NZ_CP007029.1_2362985_2363783_-	COG1305, COG1305, Transglutaminase-like enzymes, putative cysteine proteases [Amino acid transport and metabolism]	NA|278aa|up_3|NZ_CP007029.1_2364258_2365092_+	PRK14059, PRK14059, pyrimidine reductase family protein	NA|329aa|up_2|NZ_CP007029.1_2365360_2366347_-	TIGR00950, Uncharacterized_inner_membrane_transporter_YicL, Carboxylate/Amino Acid/Amine Transporter	NA|606aa|up_1|NZ_CP007029.1_2366703_2368521_+	cd01115, SLC13_permease, Permease SLC13 (solute carrier 13)	NA|515aa|up_0|NZ_CP007029.1_2368607_2370152_-	PRK05590, PRK05590, hypothetical protein; Provisional	NA|82aa|down_0|NZ_CP007029.1_2370329_2370575_+	NA	NA|1135aa|down_1|NZ_CP007029.1_2370607_2374012_-	COG4096, HsdR, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]	NA|84aa|down_2|NZ_CP007029.1_2374701_2374953_+	PRK11409, PRK11409, YoeB-YefM toxin-antitoxin system antitoxin YefM	NA|96aa|down_3|NZ_CP007029.1_2374949_2375237_+	pfam06769, YoeB_toxin, YoeB-like toxin of bacterial type II toxin-antitoxin system	NA|93aa|down_4|NZ_CP007029.1_2375256_2375535_-	TIGR03831, hypothetical_protein, YgiT-type zinc finger domain	NA|105aa|down_5|NZ_CP007029.1_2375531_2375846_-	pfam14076, DUF4258, Domain of unknown function (DUF4258)	NA|420aa|down_6|NZ_CP007029.1_2376525_2377785_-	pfam13304, AAA_21, AAA domain, putative AbiEii toxin, Type IV TA system	NA|394aa|down_7|NZ_CP007029.1_2378054_2379236_-	cd17293, RMtype1_S_Ppo21ORF8840P_TRD1-CR1_like, Type I restriction-modification system specificity (S) subunit TRD-CR, similar to Paenibacillus polymyxa SQR-21 SQR21 S subunit (S	NA|501aa|down_8|NZ_CP007029.1_2379232_2380735_-	COG0286, HsdM, Type I restriction-modification system methyltransferase subunit [Defense mechanisms]	NA|63aa|down_9|NZ_CP007029.1_2381632_2381821_-	NA
GCF_000227685.2_ASM22768v3	NZ_CP007029	Thioalkalivibrio paradoxus ARh 1, complete genome	11	2975043-2975610	8,11,7	PILER-CR,CRISPRCasFinder,CRT	no	WYL,cas6f,cas7f,cas5f,cas8f,cas3-cas2,cas1	cas3,csb2gr5,cas7,cas8u2,RT,PD-DExK,cas10d,csc2gr7,csc1gr5,cas4,cas1,cas2,cas6,csx1,cmr6gr7,cmr5gr11,cmr4gr7,cmr3gr5,cas10,cmr1gr7,csm5gr7,csm4gr5,csm3gr7,csm2gr11,DinG,DEDDh,WYL,cas6f,cas7f,cas5f,cas8f,cas3-cas2,csa3	Type I-F	TTTCTGAGCTGCCTGCGCGGCAGCGAAC,TTTCTGAGCTGCCTGCGCGGCAGCGAAC,TTTCTGAGCTGCCTGCGCGGCAGCGAAC	28,28,28	0	0	NA	NA	I-F:I-F:I-F	9,9,9	9	TypeI-F	cas3,csb2gr5,cas7,cas8u2,RT,PD-DExK,cas10d,csc2gr7,csc1gr5,cas4,cas1,cas2,cas6,csx1,cmr6gr7,cmr5gr11,cmr4gr7,cmr3gr5,cas10,cmr1gr7,csm5gr7,csm4gr5,csm3gr7,csm2gr11,DinG,DEDDh,WYL,cas6f,cas7f,cas5f,cas8f,cas3-cas2,csa3	NA|259aa|up_9|NZ_CP007029.1_2963511_2964288_+,NA|46aa|up_5|NZ_CP007029.1_2968820_2968958_+,NA|58aa|up_0|NZ_CP007029.1_2974779_2974953_-,NA|273aa|down_7|NZ_CP007029.1_2992419_2993238_-,NA|481aa|down_9|NZ_CP007029.1_2994292_2995735_-	NA|259aa|up_9|NZ_CP007029.1_2963511_2964288_+	NA	NA|238aa|up_8|NZ_CP007029.1_2964547_2965261_-	cd07185, OmpA_C-like, Peptidoglycan binding domains similar to the C-terminal domain of outer-membrane protein OmpA	NA|518aa|up_7|NZ_CP007029.1_2965275_2966829_-	COG4943, COG4943, Predicted signal transduction protein containing sensor and EAL domains [Signal transduction mechanisms]	NA|353aa|up_6|NZ_CP007029.1_2967469_2968528_+	COG0223, Fmt, Methionyl-tRNA formyltransferase [Translation, ribosomal structure and biogenesis]	NA|46aa|up_5|NZ_CP007029.1_2968820_2968958_+	NA	NA|64aa|up_4|NZ_CP007029.1_2969062_2969254_+	cd03808, GT4_CapM-like, capsular polysaccharide biosynthesis glycosyltransferase CapM and similar proteins	NA|245aa|up_3|NZ_CP007029.1_2969295_2970030_+	cd03808, GT4_CapM-like, capsular polysaccharide biosynthesis glycosyltransferase CapM and similar proteins	NA|1371aa|up_2|NZ_CP007029.1_2970117_2974230_+	cd18012, DEXQc_arch_SWI2_SNF2, DEAQ-box helicase domain of archaeal and bacterial SNF2-related proteins	NA|130aa|up_1|NZ_CP007029.1_2974320_2974710_+	TIGR03830, transcriptional_regulator_XRE_family, putative zinc finger/helix-turn-helix protein, YgiT family	NA|58aa|up_0|NZ_CP007029.1_2974779_2974953_-	NA	cas6f|187aa|down_0|NZ_CP007029.1_2983069_2983630_-	pfam09618, Cas_Csy4, CRISPR-associated protein (Cas_Csy4)	cas7f|347aa|down_1|NZ_CP007029.1_2983633_2984674_-	pfam09615, Cas_Csy3, CRISPR-associated protein (Cas_Csy3)	cas5f|329aa|down_2|NZ_CP007029.1_2984691_2985678_-	pfam09614, Cas_Csy2, CRISPR-associated protein (Cas_Csy2)	cas8f|428aa|down_3|NZ_CP007029.1_2985670_2986954_-	pfam09611, Cas_Csy1, CRISPR-associated protein (Cas_Csy1)	cas3-cas2|1119aa|down_4|NZ_CP007029.1_2987052_2990409_-	TIGR02562, conserved_hypothetical_protein, CRISPR-associated helicase Cas3, subtype I-F/YPEST	cas1|326aa|down_5|NZ_CP007029.1_2990405_2991383_-	TIGR03637, cas1_YPEST, CRISPR-associated endonuclease Cas1, subtype I-F/YPEST	NA|150aa|down_6|NZ_CP007029.1_2991825_2992275_-	NF033192, JDVT-CAAX, JDVT-CTERM system CAAX-type protease	NA|273aa|down_7|NZ_CP007029.1_2992419_2993238_-	NA	NA|256aa|down_8|NZ_CP007029.1_2993328_2994096_-	TIGR04315, cytochrome_c_family_protein, octaheme c-type cytochrome, tetrathionate reductase family	NA|481aa|down_9|NZ_CP007029.1_2994292_2995735_-	NA
GCF_000227685.2_ASM22768v3	NZ_CP007029	Thioalkalivibrio paradoxus ARh 1, complete genome	12	2977326-2982937	9,12,8,10,11	PILER-CR,CRISPRCasFinder,CRT,PILER-CR,PILER-CR	no	cas6f,cas7f,cas5f,cas8f,cas3-cas2,cas1	cas3,csb2gr5,cas7,cas8u2,RT,PD-DExK,cas10d,csc2gr7,csc1gr5,cas4,cas1,cas2,cas6,csx1,cmr6gr7,cmr5gr11,cmr4gr7,cmr3gr5,cas10,cmr1gr7,csm5gr7,csm4gr5,csm3gr7,csm2gr11,DinG,DEDDh,WYL,cas6f,cas7f,cas5f,cas8f,cas3-cas2,csa3	Type I-F	TTTCTGAGCTGCCTGCGCGGCAGCGAAC,TTTCTGAGCTGCCTGCGCGGCAGCGAAC,TTTCTGAGCTGCCTGCGCGGCAGCGAAC,TTTCTGAGCTGCCTGCGCGGCAGCGAAC,TTTCTGAGCTGCCTGCGCGGCAGCGAAC	28,28,28,28,28	0	0	NA	NA	I-F:I-F:I-F:I-F:I-F	89,93,93,89,89	93	TypeI-F	cas3,csb2gr5,cas7,cas8u2,RT,PD-DExK,cas10d,csc2gr7,csc1gr5,cas4,cas1,cas2,cas6,csx1,cmr6gr7,cmr5gr11,cmr4gr7,cmr3gr5,cas10,cmr1gr7,csm5gr7,csm4gr5,csm3gr7,csm2gr11,DinG,DEDDh,WYL,cas6f,cas7f,cas5f,cas8f,cas3-cas2,csa3	NA|259aa|up_9|NZ_CP007029.1_2963511_2964288_+,NA|46aa|up_5|NZ_CP007029.1_2968820_2968958_+,NA|58aa|up_0|NZ_CP007029.1_2974779_2974953_-,NA|273aa|down_7|NZ_CP007029.1_2992419_2993238_-,NA|481aa|down_9|NZ_CP007029.1_2994292_2995735_-	NA|259aa|up_9|NZ_CP007029.1_2963511_2964288_+	NA	NA|238aa|up_8|NZ_CP007029.1_2964547_2965261_-	cd07185, OmpA_C-like, Peptidoglycan binding domains similar to the C-terminal domain of outer-membrane protein OmpA	NA|518aa|up_7|NZ_CP007029.1_2965275_2966829_-	COG4943, COG4943, Predicted signal transduction protein containing sensor and EAL domains [Signal transduction mechanisms]	NA|353aa|up_6|NZ_CP007029.1_2967469_2968528_+	COG0223, Fmt, Methionyl-tRNA formyltransferase [Translation, ribosomal structure and biogenesis]	NA|46aa|up_5|NZ_CP007029.1_2968820_2968958_+	NA	NA|64aa|up_4|NZ_CP007029.1_2969062_2969254_+	cd03808, GT4_CapM-like, capsular polysaccharide biosynthesis glycosyltransferase CapM and similar proteins	NA|245aa|up_3|NZ_CP007029.1_2969295_2970030_+	cd03808, GT4_CapM-like, capsular polysaccharide biosynthesis glycosyltransferase CapM and similar proteins	NA|1371aa|up_2|NZ_CP007029.1_2970117_2974230_+	cd18012, DEXQc_arch_SWI2_SNF2, DEAQ-box helicase domain of archaeal and bacterial SNF2-related proteins	NA|130aa|up_1|NZ_CP007029.1_2974320_2974710_+	TIGR03830, transcriptional_regulator_XRE_family, putative zinc finger/helix-turn-helix protein, YgiT family	NA|58aa|up_0|NZ_CP007029.1_2974779_2974953_-	NA	cas6f|187aa|down_0|NZ_CP007029.1_2983069_2983630_-	pfam09618, Cas_Csy4, CRISPR-associated protein (Cas_Csy4)	cas7f|347aa|down_1|NZ_CP007029.1_2983633_2984674_-	pfam09615, Cas_Csy3, CRISPR-associated protein (Cas_Csy3)	cas5f|329aa|down_2|NZ_CP007029.1_2984691_2985678_-	pfam09614, Cas_Csy2, CRISPR-associated protein (Cas_Csy2)	cas8f|428aa|down_3|NZ_CP007029.1_2985670_2986954_-	pfam09611, Cas_Csy1, CRISPR-associated protein (Cas_Csy1)	cas3-cas2|1119aa|down_4|NZ_CP007029.1_2987052_2990409_-	TIGR02562, conserved_hypothetical_protein, CRISPR-associated helicase Cas3, subtype I-F/YPEST	cas1|326aa|down_5|NZ_CP007029.1_2990405_2991383_-	TIGR03637, cas1_YPEST, CRISPR-associated endonuclease Cas1, subtype I-F/YPEST	NA|150aa|down_6|NZ_CP007029.1_2991825_2992275_-	NF033192, JDVT-CAAX, JDVT-CTERM system CAAX-type protease	NA|273aa|down_7|NZ_CP007029.1_2992419_2993238_-	NA	NA|256aa|down_8|NZ_CP007029.1_2993328_2994096_-	TIGR04315, cytochrome_c_family_protein, octaheme c-type cytochrome, tetrathionate reductase family	NA|481aa|down_9|NZ_CP007029.1_2994292_2995735_-	NA
