assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000226295.1_ASM22629v1	NC_016024	Chloracidobacterium thermophilum B chromosome 1, complete sequence	1	121694-121788	1	CRISPRCasFinder	no	cas3,cas8u1,csb1gr7,csb2gr5	cas10,cmr3gr5,cmr4gr7,cmr5gr11,csm3gr7,csm6,cas3,cas8u1,csb1gr7,csb2gr5,cmr6gr7,cmr1gr7,c2c9_V-U4,DinG,Cas14u_CAS-V,DEDDh,csa3,PD-DExK	Unclear	TGATTGAACAGCGCGGCTTCCCA	23	0	0	NA	NA	NA	1	1	Unclear	cas10,cmr3gr5,cmr4gr7,cmr5gr11,csm3gr7,csm6,cas3,cas8u1,csb1gr7,csb2gr5,cmr6gr7,cmr1gr7,c2c9_V-U4,DinG,Cas14u_CAS-V,DEDDh,csa3,PD-DExK,Cas14c_CAS-V-F,cas7,WYL,cas6,cas8b3,cas5,cas1,cas2,Cas9_archaeal	NA|176aa|up_7|NC_016024.1_110225_110753_+,NA	NA|369aa|up_9|NC_016024.1_107998_109105_+	pfam04909, Amidohydro_2, Amidohydrolase	NA|320aa|up_8|NC_016024.1_109152_110112_-	pfam01218, Coprogen_oxidas, Coproporphyrinogen III oxidase	NA|176aa|up_7|NC_016024.1_110225_110753_+	NA	NA|514aa|up_6|NC_016024.1_110749_112291_+	TIGR02730, Carotenoid_isomerase, carotene isomerase	NA|246aa|up_5|NC_016024.1_112386_113124_+	PRK03619, PRK03619, phosphoribosylformylglycinamidine synthase subunit PurQ	NA|286aa|up_4|NC_016024.1_113101_113959_-	cd01572, QPRTase, Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes	NA|397aa|up_3|NC_016024.1_114069_115260_+	PRK05643, PRK05643, DNA polymerase III subunit beta; Validated	NA|406aa|up_2|NC_016024.1_115325_116543_-	COG1092, COG1092, Predicted SAM-dependent methyltransferases [General function prediction only]	NA|240aa|up_1|NC_016024.1_116681_117401_+	cd10432, BI-1-like_bacterial, Bacterial BAX inhibitor (BI)-1/YccA-like proteins	cas3|956aa|up_0|NC_016024.1_117752_120620_+	TIGR02621, CRISPR-associated_helicase_Cas3, CRISPR-associated helicase Cas3, subtype Dpsyc	csb1gr7|381aa|down_0|NC_016024.1_122812_123955_+	pfam09617, Cas_GSU0053, CRISPR-associated protein GSU0053 (Cas_GSU0053)	csb2gr5|507aa|down_1|NC_016024.1_123957_125478_+	TIGR02165, CRISPR-associated_protein_GSU0054_family, CRISPR-associated protein GSU0054/csb2, Dpsyc system	NA|572aa|down_2|NC_016024.1_125647_127363_+	COG0318, CaiC, Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II [Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism]	NA|255aa|down_3|NC_016024.1_127453_128218_+	pfam01987, AIM24, Mitochondrial biogenesis AIM24	NA|150aa|down_4|NC_016024.1_128248_128698_-	PRK05578, PRK05578, cytidine deaminase; Validated	NA|212aa|down_5|NC_016024.1_128694_129330_-	cd07989, LPLAT_AGPAT-like, Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: AGPAT-like	NA|480aa|down_6|NC_016024.1_129430_130870_-	cd07473, Peptidases_S8_Subtilisin_like, Peptidase S8 family domain in Subtilisin-like proteins	NA|211aa|down_7|NC_016024.1_131022_131655_-	TIGR04349, Radical_SAM_domain_protein, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE, gammaproteobacterial type	NA|496aa|down_8|NC_016024.1_131722_133210_-	cd06423, CESA_like, CESA_like is  the cellulose synthase superfamily	NA|291aa|down_9|NC_016024.1_133313_134186_-	cd05327, retinol-DH_like_SDR_c_like, retinol dehydrogenase (retinol-DH), Light dependent Protochlorophyllide (Pchlide) OxidoReductase (LPOR) and related proteins, classical (c) SDRs
GCF_000226295.1_ASM22629v1	NC_016024	Chloracidobacterium thermophilum B chromosome 1, complete sequence	2	240746-240928	1	PILER-CR	no		cas10,cmr3gr5,cmr4gr7,cmr5gr11,csm3gr7,csm6,cas3,cas8u1,csb1gr7,csb2gr5,cmr6gr7,cmr1gr7,c2c9_V-U4,DinG,Cas14u_CAS-V,DEDDh,csa3,PD-DExK	Orphan	CGTACGGGCAACCCCCCGTGGTTGCCCCGATC	32	0	0	NA	NA	NA	2	2	Orphan	cas10,cmr3gr5,cmr4gr7,cmr5gr11,csm3gr7,csm6,cas3,cas8u1,csb1gr7,csb2gr5,cmr6gr7,cmr1gr7,c2c9_V-U4,DinG,Cas14u_CAS-V,DEDDh,csa3,PD-DExK,Cas14c_CAS-V-F,cas7,WYL,cas6,cas8b3,cas5,cas1,cas2,Cas9_archaeal	NA|72aa|up_8|NC_016024.1_226947_227163_+,NA|170aa|up_3|NC_016024.1_231480_231990_+,NA|87aa|up_2|NC_016024.1_232511_232772_+,NA|309aa|down_2|NC_016024.1_243562_244489_+	NA|210aa|up_9|NC_016024.1_225464_226094_+	pfam13715, CarbopepD_reg_2, CarboxypepD_reg-like domain	NA|72aa|up_8|NC_016024.1_226947_227163_+	NA	NA|385aa|up_7|NC_016024.1_227249_228404_+	pfam07464, ApoLp-III, Apolipophorin-III precursor (apoLp-III)	NA|488aa|up_6|NC_016024.1_228425_229889_+	COG1721, COG1721, Uncharacterized conserved protein (some members contain a von Willebrand factor type A (vWA) domain) [General function prediction only]	NA|167aa|up_5|NC_016024.1_229910_230411_+	PHA03247, PHA03247, large tegument protein UL36; Provisional	NA|305aa|up_4|NC_016024.1_230535_231450_+	pfam02569, Pantoate_ligase, Pantoate-beta-alanine ligase	NA|170aa|up_3|NC_016024.1_231480_231990_+	NA	NA|87aa|up_2|NC_016024.1_232511_232772_+	NA	NA|1154aa|up_1|NC_016024.1_233415_236877_+	cd09178, PLDc_N_Snf2_like, N-terminal putative catalytic domain of uncharacterized HKD family nucleases fused to putative helicases from the Snf2-like family	NA|1113aa|up_0|NC_016024.1_236876_240215_+	NF033451, BREX_2_MTaseX, BREX-2 system adenine-specific DNA-methyltransferase PglX	NA|119aa|down_0|NC_016024.1_242285_242642_+	pfam02261, Asp_decarbox, Aspartate decarboxylase	NA|247aa|down_1|NC_016024.1_242708_243449_+	cd06551, LPLAT, Lysophospholipid acyltransferases (LPLATs) of glycerophospholipid biosynthesis	NA|309aa|down_2|NC_016024.1_243562_244489_+	NA	NA|307aa|down_3|NC_016024.1_244516_245437_+	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms]	NA|272aa|down_4|NC_016024.1_245454_246270_-	cd06218, DHOD_e_trans, FAD/NAD binding domain in the electron transfer subunit of dihydroorotate dehydrogenase	NA|643aa|down_5|NC_016024.1_246427_248356_+	PRK05667, dnaG, DNA primase; Validated	NA|534aa|down_6|NC_016024.1_248352_249954_+	TIGR02393, RNA_polymerase_sigma_factor_RpoD, RNA polymerase sigma factor RpoD, C-terminal domain	NA|483aa|down_7|NC_016024.1_249993_251442_-	COG3670, COG3670, Lignostilbene-alpha,beta-dioxygenase and related enzymes [Secondary metabolites biosynthesis, transport, and catabolism]	NA|198aa|down_8|NC_016024.1_251452_252046_-	pfam13328, HD_4, HD domain	NA|147aa|down_9|NC_016024.1_252076_252517_-	COG0824, FcbC, Predicted thioesterase [General function prediction only]
GCF_000226295.1_ASM22629v1	NC_016024	Chloracidobacterium thermophilum B chromosome 1, complete sequence	3	598037-598149	2	CRISPRCasFinder	no		cas10,cmr3gr5,cmr4gr7,cmr5gr11,csm3gr7,csm6,cas3,cas8u1,csb1gr7,csb2gr5,cmr6gr7,cmr1gr7,c2c9_V-U4,DinG,Cas14u_CAS-V,DEDDh,csa3,PD-DExK	Orphan	TCACGCTGAAGTCTGAACAGCAGGCGCTG	29	1	1	598066-598120	NC_016024.1_598171-598225	NA	1	1	Orphan	cas10,cmr3gr5,cmr4gr7,cmr5gr11,csm3gr7,csm6,cas3,cas8u1,csb1gr7,csb2gr5,cmr6gr7,cmr1gr7,c2c9_V-U4,DinG,Cas14u_CAS-V,DEDDh,csa3,PD-DExK,Cas14c_CAS-V-F,cas7,WYL,cas6,cas8b3,cas5,cas1,cas2,Cas9_archaeal	NA,NA|181aa|down_6|NC_016024.1_605108_605651_+	NA|396aa|up_9|NC_016024.1_583139_584327_-	pfam10092, DUF2330, Uncharacterized protein conserved in bacteria (DUF2330)	NA|768aa|up_8|NC_016024.1_584323_586627_-	COG1297, COG1297, Predicted membrane protein [Function unknown]	NA|557aa|up_7|NC_016024.1_586659_588330_-	cd05660, M28_like_PA, M28 Zn-peptidase containing a protease-associated (PA) domain insert	NA|407aa|up_6|NC_016024.1_588526_589747_+	cd14014, STKc_PknB_like, Catalytic domain of bacterial Serine/Threonine kinases, PknB and similar proteins	NA|234aa|up_5|NC_016024.1_589762_590464_+	pfam13308, YARHG, YARHG domain	NA|471aa|up_4|NC_016024.1_590651_592064_+	pfam04293, SpoVR, SpoVR like protein	NA|443aa|up_3|NC_016024.1_592171_593500_+	pfam01964, ThiC_Rad_SAM, Radical SAM ThiC family	NA|175aa|up_2|NC_016024.1_593912_594437_+	pfam01967, MoaC, MoaC family	NA|282aa|up_1|NC_016024.1_594440_595286_+	COG1352, CheR, Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]	NA|730aa|up_0|NC_016024.1_595357_597547_+	cd00317, cyclophilin, cyclophilin: cyclophilin-type peptidylprolyl cis- trans isomerases	NA|318aa|down_0|NC_016024.1_598559_599513_-	pfam07291, MauE, Methylamine utilisation protein MauE	NA|190aa|down_1|NC_016024.1_599509_600079_-	cd00195, UBCc, Ubiquitin-conjugating enzyme E2, catalytic (UBCc) domain	NA|259aa|down_2|NC_016024.1_600190_600967_+	PRK00216, ubiE, bifunctional demethylmenaquinone methyltransferase/2-methoxy-6-polyprenyl-1,4-benzoquinol methylase UbiE	NA|528aa|down_3|NC_016024.1_601003_602587_-	PRK00881, purH, bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase; Provisional	NA|411aa|down_4|NC_016024.1_602735_603968_+	pfam06750, DiS_P_DiS, Bacterial Peptidase A24 N-terminal domain	NA|367aa|down_5|NC_016024.1_603975_605076_+	PRK00488, pheS, phenylalanyl-tRNA synthetase subunit alpha; Validated	NA|181aa|down_6|NC_016024.1_605108_605651_+	NA	NA|342aa|down_7|NC_016024.1_605660_606686_+	COG0009, SUA5, Putative translation factor (SUA5) [Translation, ribosomal structure and biogenesis]	NA|318aa|down_8|NC_016024.1_606792_607746_+	PRK05627, PRK05627, bifunctional riboflavin kinase/FAD synthetase	NA|833aa|down_9|NC_016024.1_607786_610285_-	COG2976, COG2976, Uncharacterized protein conserved in bacteria [Function unknown]
GCF_000226295.1_ASM22629v1	NC_016024	Chloracidobacterium thermophilum B chromosome 1, complete sequence	4	2481384-2481480	3	CRISPRCasFinder	no		cas10,cmr3gr5,cmr4gr7,cmr5gr11,csm3gr7,csm6,cas3,cas8u1,csb1gr7,csb2gr5,cmr6gr7,cmr1gr7,c2c9_V-U4,DinG,Cas14u_CAS-V,DEDDh,csa3,PD-DExK	Orphan	ATTCAACCGTCGCTACGCGACGGG	24	0	0	NA	NA	NA	1	1	Orphan	cas10,cmr3gr5,cmr4gr7,cmr5gr11,csm3gr7,csm6,cas3,cas8u1,csb1gr7,csb2gr5,cmr6gr7,cmr1gr7,c2c9_V-U4,DinG,Cas14u_CAS-V,DEDDh,csa3,PD-DExK,Cas14c_CAS-V-F,cas7,WYL,cas6,cas8b3,cas5,cas1,cas2,Cas9_archaeal	NA|196aa|up_7|NC_016024.1_2466480_2467068_+,NA|82aa|up_4|NC_016024.1_2471266_2471512_+,NA|100aa|down_6|NC_016024.1_2491948_2492248_-	NA|204aa|up_9|NC_016024.1_2464783_2465395_+	pfam08241, Methyltransf_11, Methyltransferase domain	NA|362aa|up_8|NC_016024.1_2465391_2466477_+	PRK00892, lpxD, UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; Provisional	NA|196aa|up_7|NC_016024.1_2466480_2467068_+	NA	NA|338aa|up_6|NC_016024.1_2468216_2469230_+	cd07731, ComA-like_MBL-fold, Competence protein ComA, ComEC and related proteins; MBL-fold metallo hydrolase domain	NA|630aa|up_5|NC_016024.1_2469242_2471132_-	TIGR02917, TPR_domain_protein, putative PEP-CTERM system TPR-repeat lipoprotein	NA|82aa|up_4|NC_016024.1_2471266_2471512_+	NA	NA|522aa|up_3|NC_016024.1_2471488_2473054_-	cd16278, metallo-hydrolase-like_MBL-fold, uncharacterized subgroup of the MBL-fold_metallo-hydrolase superfamily; MBL-fold metallo hydrolase domain	NA|329aa|up_2|NC_016024.1_2473052_2474039_+	pfam03544, TonB_C, Gram-negative bacterial TonB protein C-terminal	NA|159aa|up_1|NC_016024.1_2474028_2474505_+	pfam01797, Y1_Tnp, Transposase IS200 like	NA|1655aa|up_0|NC_016024.1_2475384_2480349_-	cd14948, BACON, Bacteroidetes-Associated Carbohydrate-binding (putative) Often N-terminal (BACON) domain	NA|358aa|down_0|NC_016024.1_2483054_2484128_-	cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment	NA|456aa|down_1|NC_016024.1_2484173_2485541_-	cd03112, CobW-like, cobalamin synthesis protein CobW	NA|224aa|down_2|NC_016024.1_2485726_2486398_+	cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein	NA|491aa|down_3|NC_016024.1_2486407_2487880_+	COG4591, LolE, ABC-type transport system, involved in lipoprotein release, permease component [Cell envelope biogenesis, outer membrane]	NA|526aa|down_4|NC_016024.1_2489369_2490947_-	TIGR02733, similar_to_to_phytoene_dehydrogenase, C-3',4' desaturase CrtD	NA|332aa|down_5|NC_016024.1_2490956_2491952_-	PRK00091, miaA, tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed	NA|100aa|down_6|NC_016024.1_2491948_2492248_-	NA	NA|77aa|down_7|NC_016024.1_2492529_2492760_+	pfam09527, ATPase_gene1, Putative F0F1-ATPase subunit Ca2+/Mg2+ transporter	NA|451aa|down_8|NC_016024.1_2492769_2494122_-	COG0654, UbiH, 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]	NA|680aa|down_9|NC_016024.1_2494244_2496284_+	cd14014, STKc_PknB_like, Catalytic domain of bacterial Serine/Threonine kinases, PknB and similar proteins
GCF_000226295.1_ASM22629v1	NC_016024	Chloracidobacterium thermophilum B chromosome 1, complete sequence	5	2481632-2481720	4	CRISPRCasFinder	no		cas10,cmr3gr5,cmr4gr7,cmr5gr11,csm3gr7,csm6,cas3,cas8u1,csb1gr7,csb2gr5,cmr6gr7,cmr1gr7,c2c9_V-U4,DinG,Cas14u_CAS-V,DEDDh,csa3,PD-DExK	Orphan	ATTCAACCGTCGCTACGCGACGGG	24	1	1	2481656-2481696	NC_016024.1_2475236-2475196	NA	1	1	Orphan	cas10,cmr3gr5,cmr4gr7,cmr5gr11,csm3gr7,csm6,cas3,cas8u1,csb1gr7,csb2gr5,cmr6gr7,cmr1gr7,c2c9_V-U4,DinG,Cas14u_CAS-V,DEDDh,csa3,PD-DExK,Cas14c_CAS-V-F,cas7,WYL,cas6,cas8b3,cas5,cas1,cas2,Cas9_archaeal	NA|196aa|up_7|NC_016024.1_2466480_2467068_+,NA|82aa|up_4|NC_016024.1_2471266_2471512_+,NA|100aa|down_6|NC_016024.1_2491948_2492248_-	NA|204aa|up_9|NC_016024.1_2464783_2465395_+	pfam08241, Methyltransf_11, Methyltransferase domain	NA|362aa|up_8|NC_016024.1_2465391_2466477_+	PRK00892, lpxD, UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; Provisional	NA|196aa|up_7|NC_016024.1_2466480_2467068_+	NA	NA|338aa|up_6|NC_016024.1_2468216_2469230_+	cd07731, ComA-like_MBL-fold, Competence protein ComA, ComEC and related proteins; MBL-fold metallo hydrolase domain	NA|630aa|up_5|NC_016024.1_2469242_2471132_-	TIGR02917, TPR_domain_protein, putative PEP-CTERM system TPR-repeat lipoprotein	NA|82aa|up_4|NC_016024.1_2471266_2471512_+	NA	NA|522aa|up_3|NC_016024.1_2471488_2473054_-	cd16278, metallo-hydrolase-like_MBL-fold, uncharacterized subgroup of the MBL-fold_metallo-hydrolase superfamily; MBL-fold metallo hydrolase domain	NA|329aa|up_2|NC_016024.1_2473052_2474039_+	pfam03544, TonB_C, Gram-negative bacterial TonB protein C-terminal	NA|159aa|up_1|NC_016024.1_2474028_2474505_+	pfam01797, Y1_Tnp, Transposase IS200 like	NA|1655aa|up_0|NC_016024.1_2475384_2480349_-	cd14948, BACON, Bacteroidetes-Associated Carbohydrate-binding (putative) Often N-terminal (BACON) domain	NA|358aa|down_0|NC_016024.1_2483054_2484128_-	cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment	NA|456aa|down_1|NC_016024.1_2484173_2485541_-	cd03112, CobW-like, cobalamin synthesis protein CobW	NA|224aa|down_2|NC_016024.1_2485726_2486398_+	cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein	NA|491aa|down_3|NC_016024.1_2486407_2487880_+	COG4591, LolE, ABC-type transport system, involved in lipoprotein release, permease component [Cell envelope biogenesis, outer membrane]	NA|526aa|down_4|NC_016024.1_2489369_2490947_-	TIGR02733, similar_to_to_phytoene_dehydrogenase, C-3',4' desaturase CrtD	NA|332aa|down_5|NC_016024.1_2490956_2491952_-	PRK00091, miaA, tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed	NA|100aa|down_6|NC_016024.1_2491948_2492248_-	NA	NA|77aa|down_7|NC_016024.1_2492529_2492760_+	pfam09527, ATPase_gene1, Putative F0F1-ATPase subunit Ca2+/Mg2+ transporter	NA|451aa|down_8|NC_016024.1_2492769_2494122_-	COG0654, UbiH, 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]	NA|680aa|down_9|NC_016024.1_2494244_2496284_+	cd14014, STKc_PknB_like, Catalytic domain of bacterial Serine/Threonine kinases, PknB and similar proteins
GCF_000226295.1_ASM22629v1	NC_016025	Chloracidobacterium thermophilum B chromosome 2, complete sequence	1	170569-170669	1	CRISPRCasFinder	no	cas3,cas8u1,cas7,csb2gr5	c2c9_V-U4,Cas14c_CAS-V-F,csa3,cas3,cas8u1,cas7,csb2gr5,WYL,cas6,cas8b3,cas5,cas1,cas2,Cas9_archaeal,PD-DExK,Cas14u_CAS-V	Unclear	GTAGGGGCGGGTTCCGAACCCGCCC	25	0	0	NA	NA	NA	1	1	Unclear	cas10,cmr3gr5,cmr4gr7,cmr5gr11,csm3gr7,csm6,cas3,cas8u1,csb1gr7,csb2gr5,cmr6gr7,cmr1gr7,c2c9_V-U4,DinG,Cas14u_CAS-V,DEDDh,csa3,PD-DExK,Cas14c_CAS-V-F,cas7,WYL,cas6,cas8b3,cas5,cas1,cas2,Cas9_archaeal	NA,NA|81aa|down_4|NC_016025.1_174524_174767_+	NA|443aa|up_9|NC_016025.1_158366_159695_-	pfam13424, TPR_12, Tetratricopeptide repeat	NA|77aa|up_8|NC_016025.1_160100_160331_+	COG4118, Phd, Antitoxin of toxin-antitoxin stability system [Cell division and chromosome partitioning]	NA|130aa|up_7|NC_016025.1_160330_160720_+	cd09872, PIN_Sll0205-like, VapC-like PIN domain of Sll0205 protein and homologs	NA|233aa|up_6|NC_016025.1_161008_161707_-	pfam13424, TPR_12, Tetratricopeptide repeat	NA|653aa|up_5|NC_016025.1_161898_163857_-	TIGR02917, TPR_domain_protein, putative PEP-CTERM system TPR-repeat lipoprotein	NA|525aa|up_4|NC_016025.1_164283_165858_-	pfam13424, TPR_12, Tetratricopeptide repeat	NA|82aa|up_3|NC_016025.1_166264_166510_+	pfam10047, DUF2281, Protein of unknown function (DUF2281)	NA|130aa|up_2|NC_016025.1_166506_166896_+	cd09872, PIN_Sll0205-like, VapC-like PIN domain of Sll0205 protein and homologs	NA|919aa|up_1|NC_016025.1_167200_169957_-	TIGR02917, TPR_domain_protein, putative PEP-CTERM system TPR-repeat lipoprotein	NA|132aa|up_0|NC_016025.1_170024_170420_-	pfam13424, TPR_12, Tetratricopeptide repeat	NA|82aa|down_0|NC_016025.1_170904_171150_+	pfam10047, DUF2281, Protein of unknown function (DUF2281)	NA|50aa|down_1|NC_016025.1_171146_171296_+	cd09872, PIN_Sll0205-like, VapC-like PIN domain of Sll0205 protein and homologs	NA|451aa|down_2|NC_016025.1_171515_172868_-	PRK09249, PRK09249, coproporphyrinogen dehydrogenase	NA|552aa|down_3|NC_016025.1_172830_174486_-	TIGR02026, BchE, magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase	NA|81aa|down_4|NC_016025.1_174524_174767_+	NA	cas3|931aa|down_5|NC_016025.1_174995_177788_+	TIGR02621, CRISPR-associated_helicase_Cas3, CRISPR-associated helicase Cas3, subtype Dpsyc	cas8u1|712aa|down_6|NC_016025.1_177787_179923_+	TIGR04113, hypothetical_protein_AaLAA1DRAFT_1703, CRISPR-associated protein Csx17, subtype Dpsyc	cas7|455aa|down_7|NC_016025.1_179919_181284_+	pfam09617, Cas_GSU0053, CRISPR-associated protein GSU0053 (Cas_GSU0053)	csb2gr5|519aa|down_8|NC_016025.1_181280_182837_+	TIGR02165, CRISPR-associated_protein_GSU0054_family, CRISPR-associated protein GSU0054/csb2, Dpsyc system	NA|78aa|down_9|NC_016025.1_183254_183488_+	cd01675, RNR_III, Class III ribonucleotide reductase
GCF_000226295.1_ASM22629v1	NC_016025	Chloracidobacterium thermophilum B chromosome 2, complete sequence	2	420934-428142	1,2,1,2	PILER-CR,CRISPRCasFinder,CRT,PILER-CR	no	WYL,cas6,cas3,cas8b3,cas7,cas5,cas1,cas2,Cas14c_CAS-V-F	c2c9_V-U4,Cas14c_CAS-V-F,csa3,cas3,cas8u1,cas7,csb2gr5,WYL,cas6,cas8b3,cas5,cas1,cas2,Cas9_archaeal,PD-DExK,Cas14u_CAS-V	Unclear	GTGCAAAAATCTTTGATGCCGAAAGGCGTTGATCAC,GTGCAAAAATCTTTGATGCCGAAAGGCGTTGATCAC,GTGCAAAAATCTTTGATGCCGAAAGGCGTTGATCAC,GTGCAAAAATCTTTGATGCCGAAAGGCGTTGATCAC	36,36,36,36	0	0	NA	NA	I-A,I-B,II-B:I-A,I-B,II-B:I-A,I-B,II-B:I-A,I-B,II-B	97,100,100,97	100	TypeV	cas10,cmr3gr5,cmr4gr7,cmr5gr11,csm3gr7,csm6,cas3,cas8u1,csb1gr7,csb2gr5,cmr6gr7,cmr1gr7,c2c9_V-U4,DinG,Cas14u_CAS-V,DEDDh,csa3,PD-DExK,Cas14c_CAS-V-F,cas7,WYL,cas6,cas8b3,cas5,cas1,cas2,Cas9_archaeal	NA,NA	NA|374aa|up_9|NC_016025.1_408899_410021_-	cd00657, Ferritin_like, Ferritin-like superfamily of diiron-containing four-helix-bundle proteins	NA|322aa|up_8|NC_016025.1_410163_411129_-	PRK00188, trpD, anthranilate phosphoribosyltransferase; Provisional	WYL|329aa|up_7|NC_016025.1_411312_412299_+	pfam13280, WYL, WYL domain	cas6|200aa|up_6|NC_016025.1_412370_412970_+	pfam09559, Cas6, Cas6 Crispr	cas3|828aa|up_5|NC_016025.1_412966_415450_+	TIGR01587, CRISPR-associated_endonuclease/helicase_Cas3, CRISPR-associated helicase Cas3	cas8b3|524aa|up_4|NC_016025.1_415407_416979_+	TIGR03485, hypothetical_protein_L8106_30105, CRISPR-associated protein Cas8a1/Csx13, MYXAN subtype	cas7|318aa|up_3|NC_016025.1_416975_417929_+	TIGR02585, conserved_protein, CRISPR-associated protein Cas7/Cst2/DevR, subtype I-B/TNEAP	cas5|225aa|up_2|NC_016025.1_417935_418610_+	cd09688, Cas5_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas1|564aa|up_1|NC_016025.1_418678_420370_+	TIGR03983, hypothetical_protein_LA3181, CRISPR-associated endonuclease Cas1, subtype MYXAN	cas2|97aa|up_0|NC_016025.1_420396_420687_+	pfam09827, CRISPR_Cas2, CRISPR associated protein Cas2	NA|262aa|down_0|NC_016025.1_428382_429168_+	COG3292, COG3292, Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]	Cas14c_CAS-V-F|421aa|down_1|NC_016025.1_429164_430427_-	COG0675, COG0675, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|596aa|down_2|NC_016025.1_430663_432451_+	COG3292, COG3292, Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]	Cas14c_CAS-V-F|421aa|down_3|NC_016025.1_432447_433710_+	COG0675, COG0675, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|99aa|down_4|NC_016025.1_433730_434027_+	pfam07228, SpoIIE, Stage II sporulation protein E (SpoIIE)	NA|140aa|down_5|NC_016025.1_433945_434365_+	pfam07228, SpoIIE, Stage II sporulation protein E (SpoIIE)	NA|402aa|down_6|NC_016025.1_434633_435839_-	PRK12323, PRK12323, DNA polymerase III subunit gamma/tau	NA|385aa|down_7|NC_016025.1_436035_437190_+	pfam13478, XdhC_C, XdhC Rossmann domain	NA|209aa|down_8|NC_016025.1_437186_437813_+	cd04182, GT_2_like_f, GT_2_like_f is a subfamily of the glycosyltransferase family 2 (GT-2) with unknown function	NA|584aa|down_9|NC_016025.1_437828_439580_+	cd14014, STKc_PknB_like, Catalytic domain of bacterial Serine/Threonine kinases, PknB and similar proteins
GCF_000226295.1_ASM22629v1	NC_016025	Chloracidobacterium thermophilum B chromosome 2, complete sequence	3	464322-464806	3,3,2	PILER-CR,CRISPRCasFinder,CRT	no		c2c9_V-U4,Cas14c_CAS-V-F,csa3,cas3,cas8u1,cas7,csb2gr5,WYL,cas6,cas8b3,cas5,cas1,cas2,Cas9_archaeal,PD-DExK,Cas14u_CAS-V	Orphan	AATTCAAGGGGTCTTTTTCAAGACCCATGAC,AATTCAAGGGGTCTTTTTCAAGACCCATGACG,AATTCAAGGGGTCTTTTTCAAGACCCATGAC	31,32,31	0	0	NA	NA	NA:NA:NA	6,6,6	6	Orphan	cas10,cmr3gr5,cmr4gr7,cmr5gr11,csm3gr7,csm6,cas3,cas8u1,csb1gr7,csb2gr5,cmr6gr7,cmr1gr7,c2c9_V-U4,DinG,Cas14u_CAS-V,DEDDh,csa3,PD-DExK,Cas14c_CAS-V-F,cas7,WYL,cas6,cas8b3,cas5,cas1,cas2,Cas9_archaeal	NA|610aa|up_7|NC_016025.1_452424_454254_+,NA|629aa|down_1|NC_016025.1_470677_472564_-,NA|264aa|down_4|NC_016025.1_474694_475486_-,NA|213aa|down_5|NC_016025.1_475499_476138_-	NA|469aa|up_9|NC_016025.1_447859_449266_-	COG1538, TolC, Outer membrane protein [Cell envelope biogenesis, outer membrane / Intracellular trafficking and secretion]	NA|1038aa|up_8|NC_016025.1_449276_452390_-	COG0841, AcrB, Cation/multidrug efflux pump [Defense mechanisms]	NA|610aa|up_7|NC_016025.1_452424_454254_+	NA	NA|445aa|up_6|NC_016025.1_454257_455592_-	TIGR01730, COG0845:_Membrane-fusion_protein, RND family efflux transporter, MFP subunit	NA|221aa|up_5|NC_016025.1_455593_456256_-	pfam17937, TetR_C_28, Tetracyclin repressor-like, C-terminal domain	NA|428aa|up_4|NC_016025.1_456312_457596_-	COG1413, COG1413, FOG: HEAT repeat [Energy production and conversion]	NA|419aa|up_3|NC_016025.1_457945_459202_+	COG1262, COG1262, Uncharacterized conserved protein [Function unknown]	NA|233aa|up_2|NC_016025.1_459580_460279_+	PRK00301, aat, leucyl/phenylalanyl-tRNA--protein transferase; Reviewed	NA|743aa|up_1|NC_016025.1_460480_462709_+	TIGR03436, acidobact_VWFA, VWFA-related Acidobacterial domain	NA|309aa|up_0|NC_016025.1_462832_463759_+	smart00924, MgtE_N, MgtE intracellular N domain	NA|1175aa|down_0|NC_016025.1_466399_469924_-	sd00042, LVIVD, LVIVD repeat	NA|629aa|down_1|NC_016025.1_470677_472564_-	NA	NA|182aa|down_2|NC_016025.1_472867_473413_+	pfam12867, DinB_2, DinB superfamily	NA|410aa|down_3|NC_016025.1_473409_474639_+	cd17325, MFS_MdtG_SLC18_like, bacterial MdtG-like and eukaryotic solute carrier 18 (SLC18) family of the Major Facilitator Superfamily of transporters	NA|264aa|down_4|NC_016025.1_474694_475486_-	NA	NA|213aa|down_5|NC_016025.1_475499_476138_-	NA	NA|227aa|down_6|NC_016025.1_476527_477208_+	COG0586, DedA, Uncharacterized membrane-associated protein [Function unknown]	NA|139aa|down_7|NC_016025.1_477223_477640_+	COG5340, COG5340, Predicted transcriptional regulator [Transcription]	NA|200aa|down_8|NC_016025.1_477689_478289_+	cd06260, DUF820, Domain of unknown function (DUF820)	NA|339aa|down_9|NC_016025.1_478285_479302_+	COG0473, LeuB, Isocitrate/isopropylmalate dehydrogenase [Amino acid transport and metabolism]
GCF_000226295.1_ASM22629v1	NC_016025	Chloracidobacterium thermophilum B chromosome 2, complete sequence	4	984883-988627	4,4,3	PILER-CR,CRISPRCasFinder,CRT	no	WYL,cas7,csb2gr5,cas3,cas8u1,cas1,cas2	c2c9_V-U4,Cas14c_CAS-V-F,csa3,cas3,cas8u1,cas7,csb2gr5,WYL,cas6,cas8b3,cas5,cas1,cas2,Cas9_archaeal,PD-DExK,Cas14u_CAS-V	Unclear	GTTTTCCGCTTTGAAAAAAAGCGGCTCCATTGAAGC,GTTTTCCGCTTTGAAAAAAAGCGGCTCCATTGAAGC,NGTTTTCCGCTTTGAAAAAAAGCGGCTCCATTGAAGCN	36,36,38	0	0	NA	NA	NA:NA:NA	49,50,51	51	Unclear	cas10,cmr3gr5,cmr4gr7,cmr5gr11,csm3gr7,csm6,cas3,cas8u1,csb1gr7,csb2gr5,cmr6gr7,cmr1gr7,c2c9_V-U4,DinG,Cas14u_CAS-V,DEDDh,csa3,PD-DExK,Cas14c_CAS-V-F,cas7,WYL,cas6,cas8b3,cas5,cas1,cas2,Cas9_archaeal	cas8u1|304aa|up_2|NC_016025.1_981607_982519_+,NA|80aa|down_0|NC_016025.1_988823_989063_-,NA|110aa|down_6|NC_016025.1_997194_997524_-,NA|256aa|down_7|NC_016025.1_997520_998288_-	NA|355aa|up_9|NC_016025.1_970488_971553_-	TIGR03028, EpsE, polysaccharide export protein EpsE	NA|179aa|up_8|NC_016025.1_971777_972314_+	PRK09417, mogA, molybdenum cofactor biosynthesis protein MogA; Provisional	NA|659aa|up_7|NC_016025.1_972318_974295_+	pfam01326, PPDK_N, Pyruvate phosphate dikinase, PEP/pyruvate binding domain	WYL|360aa|up_6|NC_016025.1_974247_975327_-	pfam13280, WYL, WYL domain	cas7|458aa|up_5|NC_016025.1_975546_976920_+	pfam09617, Cas_GSU0053, CRISPR-associated protein GSU0053 (Cas_GSU0053)	csb2gr5|517aa|up_4|NC_016025.1_976925_978476_+	TIGR02165, CRISPR-associated_protein_GSU0054_family, CRISPR-associated protein GSU0054/csb2, Dpsyc system	cas3|1029aa|up_3|NC_016025.1_978479_981566_+	TIGR02621, CRISPR-associated_helicase_Cas3, CRISPR-associated helicase Cas3, subtype Dpsyc	cas8u1|304aa|up_2|NC_016025.1_981607_982519_+	NA	cas1|567aa|up_1|NC_016025.1_982645_984346_+	pfam01867, Cas_Cas1, CRISPR associated protein Cas1	cas2|99aa|up_0|NC_016025.1_984373_984670_+	pfam09827, CRISPR_Cas2, CRISPR associated protein Cas2	NA|80aa|down_0|NC_016025.1_988823_989063_-	NA	NA|692aa|down_1|NC_016025.1_989086_991162_-	cd07302, CHD, cyclase homology domain	NA|238aa|down_2|NC_016025.1_991254_991968_-	cd07735, class_II_PDE_MBL-fold, class II cyclic nucleotide phosphodiesterases Saccharomyces cerevisiae PDE1, Dictyostelium discoideum PDE1 and PDE7, and related proteins; MBL-fold metallo-hydrolase domain	NA|559aa|down_3|NC_016025.1_992911_994588_+	pfam10134, RPA, Replication initiator protein A	NA|640aa|down_4|NC_016025.1_994653_996573_-	PRK11360, PRK11360, two-component system sensor histidine kinase AtoS	NA|196aa|down_5|NC_016025.1_996610_997198_-	pfam13668, Ferritin_2, Ferritin-like domain	NA|110aa|down_6|NC_016025.1_997194_997524_-	NA	NA|256aa|down_7|NC_016025.1_997520_998288_-	NA	NA|317aa|down_8|NC_016025.1_998256_999207_-	TIGR00571, DNA_adenine_methylase, DNA adenine methylase (dam)	NA|255aa|down_9|NC_016025.1_999210_999975_-	sd00006, TPR, Tetratricopeptide repeat
