assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000225955.1_ASM22595v1	NC_017584	Rhodospirillum rubrum F11, complete sequence	1	198055-198146	1	CRISPRCasFinder	no	cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,csb2gr5	cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,csb2gr5,csm3gr7,csm4gr5,cas10,csa3,cas9,DEDDh,cas8c,cas4,cas6,WYL,DinG	Type I-E	GCGGTTCATCCCCGCGCATGCGGGGAACAG	30	0	0	NA	NA	I-E	1	1	TypeI-E	cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,csb2gr5,csm3gr7,csm4gr5,cas10,csa3,cas9,DEDDh,cas8c,cas4,cas6,WYL,DinG	NA,NA|78aa|down_0|NC_017584.1_198221_198455_-	NA|223aa|up_9|NC_017584.1_179582_180251_-	pfam14246, TetR_C_7, AefR-like transcriptional repressor, C-terminal region	NA|391aa|up_8|NC_017584.1_180432_181605_+	COG1566, EmrA, Multidrug resistance efflux pump [Defense mechanisms]	NA|525aa|up_7|NC_017584.1_181623_183198_+	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily	NA|562aa|up_6|NC_017584.1_183310_184996_-	pfam17200, sCache_2, Single Cache domain 2	NA|538aa|up_5|NC_017584.1_185134_186748_-	PRK00286, xseA, exodeoxyribonuclease VII large subunit; Reviewed	NA|99aa|up_4|NC_017584.1_186871_187168_-	pfam06233, Usg, Usg-like family	NA|105aa|up_3|NC_017584.1_187475_187790_+	PRK00364, groES, co-chaperonin GroES; Reviewed	NA|544aa|up_2|NC_017584.1_187807_189439_+	PRK00013, groEL, chaperonin GroEL; Reviewed	NA|86aa|up_1|NC_017584.1_189602_189860_+	TIGR03070, couple_hipB, transcriptional regulator, y4mF family	NA|576aa|up_0|NC_017584.1_189940_191668_+	PRK11660, PRK11660, putative transporter; Provisional	NA|78aa|down_0|NC_017584.1_198221_198455_-	NA	cas2|98aa|down_1|NC_017584.1_200011_200305_-	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	cas1|314aa|down_2|NC_017584.1_200285_201227_-	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas6e|221aa|down_3|NC_017584.1_201232_201895_-	smart01101, CRISPR_assoc, This domain forms an anti-parallel beta strand structure with flanking alpha helical regions	cas5|262aa|down_4|NC_017584.1_201891_202677_-	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas7|360aa|down_5|NC_017584.1_202681_203761_-	pfam09344, Cas_CT1975, CT1975-like protein	cse2gr11|201aa|down_6|NC_017584.1_203763_204366_-	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2	cas8e|556aa|down_7|NC_017584.1_204362_206030_-	cd09729, Cse1_I-E, CRISPR/Cas system-associated protein Cse1	cas3|921aa|down_8|NC_017584.1_206318_209081_-	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3	NA|314aa|down_9|NC_017584.1_209160_210102_-	PRK01278, argD, acetylornithine transaminase protein; Provisional
GCF_000225955.1_ASM22595v1	NC_017584	Rhodospirillum rubrum F11, complete sequence	2	198677-199866	2,1,1	CRISPRCasFinder,CRT,PILER-CR	no	cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,csb2gr5	cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,csb2gr5,csm3gr7,csm4gr5,cas10,csa3,cas9,DEDDh,cas8c,cas4,cas6,WYL,DinG	Type I-E	GCGGTTCATCCCCGCGCATGCGGGGAACAG,CGGTTCATCCCCGCGCATGCGGGGAACAG,CGGTTCATCCCCGCGCATGCGGGGAACAG	30,29,29	0	0	NA	NA	I-E:I-E:I-E	19,19,18	19	TypeI-E	cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,csb2gr5,csm3gr7,csm4gr5,cas10,csa3,cas9,DEDDh,cas8c,cas4,cas6,WYL,DinG	NA|78aa|up_0|NC_017584.1_198221_198455_-,NA	NA|391aa|up_9|NC_017584.1_180432_181605_+	COG1566, EmrA, Multidrug resistance efflux pump [Defense mechanisms]	NA|525aa|up_8|NC_017584.1_181623_183198_+	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily	NA|562aa|up_7|NC_017584.1_183310_184996_-	pfam17200, sCache_2, Single Cache domain 2	NA|538aa|up_6|NC_017584.1_185134_186748_-	PRK00286, xseA, exodeoxyribonuclease VII large subunit; Reviewed	NA|99aa|up_5|NC_017584.1_186871_187168_-	pfam06233, Usg, Usg-like family	NA|105aa|up_4|NC_017584.1_187475_187790_+	PRK00364, groES, co-chaperonin GroES; Reviewed	NA|544aa|up_3|NC_017584.1_187807_189439_+	PRK00013, groEL, chaperonin GroEL; Reviewed	NA|86aa|up_2|NC_017584.1_189602_189860_+	TIGR03070, couple_hipB, transcriptional regulator, y4mF family	NA|576aa|up_1|NC_017584.1_189940_191668_+	PRK11660, PRK11660, putative transporter; Provisional	NA|78aa|up_0|NC_017584.1_198221_198455_-	NA	cas2|98aa|down_0|NC_017584.1_200011_200305_-	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	cas1|314aa|down_1|NC_017584.1_200285_201227_-	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas6e|221aa|down_2|NC_017584.1_201232_201895_-	smart01101, CRISPR_assoc, This domain forms an anti-parallel beta strand structure with flanking alpha helical regions	cas5|262aa|down_3|NC_017584.1_201891_202677_-	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas7|360aa|down_4|NC_017584.1_202681_203761_-	pfam09344, Cas_CT1975, CT1975-like protein	cse2gr11|201aa|down_5|NC_017584.1_203763_204366_-	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2	cas8e|556aa|down_6|NC_017584.1_204362_206030_-	cd09729, Cse1_I-E, CRISPR/Cas system-associated protein Cse1	cas3|921aa|down_7|NC_017584.1_206318_209081_-	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3	NA|314aa|down_8|NC_017584.1_209160_210102_-	PRK01278, argD, acetylornithine transaminase protein; Provisional	NA|121aa|down_9|NC_017584.1_210682_211045_-	cd00254, LT-like, lytic transglycosylase(LT)-like domain
GCF_000225955.1_ASM22595v1	NC_017584	Rhodospirillum rubrum F11, complete sequence	3	213597-214174	2,3,2,3	PILER-CR,CRISPRCasFinder,CRT,PILER-CR	no	cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,csb2gr5,csm3gr7,csm4gr5,cas10	cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,csb2gr5,csm3gr7,csm4gr5,cas10,csa3,cas9,DEDDh,cas8c,cas4,cas6,WYL,DinG	Type III-C,Type I-E,Type III-D,Type III-A,Type III-B	AGTTTCAATGAGGCCGAGGCATTACTGCCTCGGGAGACACC,GTTTCAATGAGGCCGAGGCATTACTGCCTCGGGAGAC,GTTTCAATGAGGCCGAGGCATTACTGCCTCGGGAGAC,GTTTCAATGAGGCCGAGGCATTACTGCCTCGGGAGACG	41,37,37,38	0	0	NA	NA	NA:NA:NA:NA	6,7,7,6	7	TypeIII-C,TypeI-E,TypeIII-D,TypeIII-A,TypeIII-B	cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,csb2gr5,csm3gr7,csm4gr5,cas10,csa3,cas9,DEDDh,cas8c,cas4,cas6,WYL,DinG	NA|69aa|up_2|NC_017584.1_210993_211200_-,NA|138aa|down_1|NC_017584.1_215188_215602_-,cas10|558aa|down_6|NC_017584.1_224030_225704_-	cas5|262aa|up_9|NC_017584.1_201891_202677_-	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas7|360aa|up_8|NC_017584.1_202681_203761_-	pfam09344, Cas_CT1975, CT1975-like protein	cse2gr11|201aa|up_7|NC_017584.1_203763_204366_-	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2	cas8e|556aa|up_6|NC_017584.1_204362_206030_-	cd09729, Cse1_I-E, CRISPR/Cas system-associated protein Cse1	cas3|921aa|up_5|NC_017584.1_206318_209081_-	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3	NA|314aa|up_4|NC_017584.1_209160_210102_-	PRK01278, argD, acetylornithine transaminase protein; Provisional	NA|121aa|up_3|NC_017584.1_210682_211045_-	cd00254, LT-like, lytic transglycosylase(LT)-like domain	NA|69aa|up_2|NC_017584.1_210993_211200_-	NA	cas2|103aa|up_1|NC_017584.1_211267_211576_-	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	cas1|581aa|up_0|NC_017584.1_211592_213335_-	cd09634, Cas1_I-II-III, CRISPR/Cas system-associated protein Cas1	csb2gr5|286aa|down_0|NC_017584.1_214302_215160_-	TIGR02165, CRISPR-associated_protein_GSU0054_family, CRISPR-associated protein GSU0054/csb2, Dpsyc system	NA|138aa|down_1|NC_017584.1_215188_215602_-	NA	NA|550aa|down_2|NC_017584.1_215979_217629_-	cd11744, MIT_CorA-like, metal ion transporter CorA-like divalent cation transporter superfamily	csm3gr7|883aa|down_3|NC_017584.1_217784_220433_-	TIGR03986, CRISPR-associated_protein, CRISPR-associated protein	csm3gr7|549aa|down_4|NC_017584.1_220432_222079_-	pfam03787, RAMPs, RAMP superfamily	csm4gr5|653aa|down_5|NC_017584.1_222075_224034_-	cd09726, RAMP_I_III, CRISPR/Cas system-associated RAMP superfamily protein	cas10|558aa|down_6|NC_017584.1_224030_225704_-	NA	NA|577aa|down_7|NC_017584.1_227084_228815_-	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]	NA|536aa|down_8|NC_017584.1_228889_230497_-	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]	NA|711aa|down_9|NC_017584.1_230820_232953_-	cd01347, ligand_gated_channel, TonB dependent/Ligand-Gated channels are created by a monomeric 22 strand (22,24) anti-parallel beta-barrel
GCF_000225955.1_ASM22595v1	NC_017584	Rhodospirillum rubrum F11, complete sequence	4	401328-401408	4	CRISPRCasFinder	no	cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,csb2gr5,csm3gr7,csm4gr5,cas10,csa3,cas9,DEDDh,cas8c,cas4,cas6,WYL,DinG	Type I-E	CCGTCTGCAAGACGGCATAAAAA	23	0	0	NA	NA	NA	1	1	TypeI-E	cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,csb2gr5,csm3gr7,csm4gr5,cas10,csa3,cas9,DEDDh,cas8c,cas4,cas6,WYL,DinG	NA,NA|95aa|down_4|NC_017584.1_405485_405770_-	NA|222aa|up_9|NC_017584.1_388810_389476_+	PRK11492, hyfE, hydrogenase 4 membrane subunit; Provisional	NA|532aa|up_8|NC_017584.1_389489_391085_+	PRK06458, PRK06458, hydrogenase 4 subunit F; Validated	NA|174aa|up_7|NC_017584.1_391104_391626_+	COG3260, COG3260, Ni,Fe-hydrogenase III small subunit [Energy production and conversion]	NA|155aa|up_6|NC_017584.1_391635_392100_+	cd06067, H2MP_MemB-H2evol, Endopeptidases belonging to membrane-bound hydrogen evolving hydrogenase group	NA|177aa|up_5|NC_017584.1_392137_392668_+	cd10554, HycB_like, HycB, HydN and similar proteins	NA|714aa|up_4|NC_017584.1_392707_394849_+	TIGR01591, Formate_dehydrogenase_subunit_alpha, formate dehydrogenase, alpha subunit, archaeal-type	NA|336aa|up_3|NC_017584.1_394968_395976_+	PRK00164, moaA, GTP 3',8-cyclase MoaA	NA|734aa|up_2|NC_017584.1_396245_398447_+	PRK15429, PRK15429, formate hydrogenlyase transcriptional activator FlhA	NA|581aa|up_1|NC_017584.1_398701_400444_+	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|211aa|up_0|NC_017584.1_400634_401267_+	COG1280, RhtB, Putative threonine efflux protein [Amino acid transport and metabolism]	NA|308aa|down_0|NC_017584.1_402052_402976_-	cd08433, PBP2_Nac, The C-teminal substrate binding domain of LysR-like nitrogen assimilation control (NAC) protein, contains the type 2 periplasmic binding fold	NA|323aa|down_1|NC_017584.1_403117_404086_+	pfam00892, EamA, EamA-like transporter family	NA|230aa|down_2|NC_017584.1_404155_404845_+	PRK13972, PRK13972, GSH-dependent disulfide bond oxidoreductase; Provisional	NA|156aa|down_3|NC_017584.1_405003_405471_-	COG0783, Dps, DNA-binding ferritin-like protein (oxidative damage protectant) [Inorganic ion transport and metabolism]	NA|95aa|down_4|NC_017584.1_405485_405770_-	NA	NA|321aa|down_5|NC_017584.1_405955_406918_+	cd08411, PBP2_OxyR, The C-terminal substrate-binding domain of the LysR-type transcriptional regulator OxyR, a member of the type 2 periplasmic binding fold protein superfamily	NA|180aa|down_6|NC_017584.1_407066_407606_+	cd04333, ProX_deacylase, This CD, composed mainly of bacterial single-domain proteins, includes the Thermus thermophilus (Tt) YbaK-like protein, a homolog of the trans-acting Escherichia coli YbaK Cys-tRNA(Pro) deacylase and the Agrobacterium tumefaciens  ProX Ala-tRNA(Pro) deacylase and also the cis-acting prolyl-tRNA synthetase-editing domain (ProRS-INS)	NA|281aa|down_7|NC_017584.1_407931_408774_+	pfam13649, Methyltransf_25, Methyltransferase domain	NA|129aa|down_8|NC_017584.1_408931_409318_-	COG1733, COG1733, Predicted transcriptional regulators [Transcription]	NA|109aa|down_9|NC_017584.1_409372_409699_+	pfam12680, SnoaL_2, SnoaL-like domain
GCF_000225955.1_ASM22595v1	NC_017584	Rhodospirillum rubrum F11, complete sequence	5	420333-422803	4,5,3,5	PILER-CR,CRISPRCasFinder,CRT,PILER-CR	no	cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,csb2gr5,csm3gr7,csm4gr5,cas10,csa3,cas9,DEDDh,cas8c,cas4,cas6,WYL,DinG	Type I-E	GGTTCC----------CCCGCACTCGTGGGGATAGACC,GGTTCCCCCGCACTCGTGGGGATAGACCC,GGTTCCCCCNCACNCGTGGGGATAGACCC,GGTTCC----------CCCACACCCGTGGGGATAGACC	38,29,29,38	0	0	NA	NA	NA:NA:NA:NA	36,40,40,36	40	TypeI-E	cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,csb2gr5,csm3gr7,csm4gr5,cas10,csa3,cas9,DEDDh,cas8c,cas4,cas6,WYL,DinG	cas8e|136aa|up_6|NC_017584.1_415471_415879_+,NA|279aa|down_5|NC_017584.1_426645_427482_+	NA|264aa|up_9|NC_017584.1_409695_410487_+	PRK06523, PRK06523, short chain dehydrogenase; Provisional	cas3|886aa|up_8|NC_017584.1_411274_413932_+	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3	cas8e|428aa|up_7|NC_017584.1_414191_415475_+	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1	cas8e|136aa|up_6|NC_017584.1_415471_415879_+	NA	cse2gr11|188aa|up_5|NC_017584.1_415868_416432_+	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2	cas7|382aa|up_4|NC_017584.1_416444_417590_+	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI	cas5|250aa|up_3|NC_017584.1_417582_418332_+	TIGR01868, hypothetical_protein, CRISPR-associated protein Cas5/CasD, subtype I-E/ECOLI	cas6e|244aa|up_2|NC_017584.1_418328_419060_+	smart01101, CRISPR_assoc, This domain forms an anti-parallel beta strand structure with flanking alpha helical regions	cas1|294aa|up_1|NC_017584.1_419070_419952_+	cd09719, Cas1_I-E, CRISPR/Cas system-associated protein Cas1	cas2|108aa|up_0|NC_017584.1_419951_420275_+	cd09648, Cas2_I-E, CRISPR/Cas system-associated protein Cas2	NA|119aa|down_0|NC_017584.1_423031_423388_-	PRK13877, PRK13877, conjugal transfer transcriptional regulator TraJ	NA|121aa|down_1|NC_017584.1_423720_424083_+	pfam17273, DUF5338, Family of unknown function (DUF5338)	NA|201aa|down_2|NC_017584.1_424642_425245_+	pfam07929, PRiA4_ORF3, Plasmid pRiA4b ORF-3-like protein	NA|280aa|down_3|NC_017584.1_425277_426117_-	pfam10134, RPA, Replication initiator protein A	NA|70aa|down_4|NC_017584.1_426329_426539_-	pfam05930, Phage_AlpA, Prophage CP4-57 regulatory protein (AlpA)	NA|279aa|down_5|NC_017584.1_426645_427482_+	NA	NA|403aa|down_6|NC_017584.1_427471_428680_-	cd00801, INT_P4_C, Bacteriophage P4 integrase, C-terminal catalytic domain	NA|526aa|down_7|NC_017584.1_428985_430563_-	PRK00074, guaA, GMP synthase; Reviewed	NA|406aa|down_8|NC_017584.1_430718_431936_-	PRK08299, PRK08299, NADP-dependent isocitrate dehydrogenase	NA|199aa|down_9|NC_017584.1_432180_432777_-	COG1611, COG1611, Predicted Rossmann fold nucleotide-binding protein [General function prediction only]
GCF_000225955.1_ASM22595v1	NC_017584	Rhodospirillum rubrum F11, complete sequence	6	530056-530553	6,4,6	CRISPRCasFinder,CRT,PILER-CR	no	cas1,cas2,cas9	cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,csb2gr5,csm3gr7,csm4gr5,cas10,csa3,cas9,DEDDh,cas8c,cas4,cas6,WYL,DinG	Type II-C, or Type II-C?,Type II-A, Type II-B,Type II-B	ACTCTACCATGGCGGTGTGGGACGGGGCCATGGAAC,ACTCTACCATGGCGGTGTGGGACGGGGCCATGGAAC,GTTCCATGGCCCCGTCCCACAC-CGCCATGGTAGAGT	36,36,37	0	0	NA	NA	NA:NA:NA	7,7,4	7	TypeII-C,orTypeII-C?,TypeII-A,TypeII-B,TypeII-B	cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,csb2gr5,csm3gr7,csm4gr5,cas10,csa3,cas9,DEDDh,cas8c,cas4,cas6,WYL,DinG	NA|149aa|up_6|NC_017584.1_524907_525354_-,NA|226aa|down_7|NC_017584.1_539216_539894_+	NA|217aa|up_9|NC_017584.1_522117_522768_-	cd18722, PIN_NicB-like, LabA-like PIN domain of Pseudomonas putida S16 NicB and related proteins	NA|323aa|up_8|NC_017584.1_522973_523942_-	COG0009, SUA5, Putative translation factor (SUA5) [Translation, ribosomal structure and biogenesis]	NA|261aa|up_7|NC_017584.1_523938_524721_-	cd01638, CysQ, CysQ, a 3'-Phosphoadenosine-5'-phosphosulfate (PAPS) 3'-phosphatase, is a bacterial member of the inositol monophosphatase family	NA|149aa|up_6|NC_017584.1_524907_525354_-	NA	NA|255aa|up_5|NC_017584.1_525367_526132_-	TIGR04335, AMMECR1_domain_protein, AmmeMemoRadiSam system protein A	NA|265aa|up_4|NC_017584.1_526141_526936_-	cd07361, MEMO_like, Memo (mediator of ErbB2-driven cell motility) is co-precipitated with the C terminus of ErbB2, a protein involved in cell motility	NA|371aa|up_3|NC_017584.1_527206_528319_+	TIGR04337, Radical_SAM, AmmeMemoRadiSam system radical SAM enzyme	cas1|174aa|up_2|NC_017584.1_528561_529083_+	TIGR03639, cas1_NMENI, CRISPR-associated endonuclease Cas1, subtype II/NMENI	cas1|115aa|up_1|NC_017584.1_529179_529524_+	TIGR03639, cas1_NMENI, CRISPR-associated endonuclease Cas1, subtype II/NMENI	cas2|113aa|up_0|NC_017584.1_529649_529988_+	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms]	cas9|1174aa|down_0|NC_017584.1_530733_534255_-	TIGR01865, conserved_hypothetical_protein, CRISPR subtype II/NMENI RNA-guided endonuclease Cas9/Csn1	NA|501aa|down_1|NC_017584.1_534502_536005_+	PRK00913, PRK00913, multifunctional aminopeptidase A; Provisional	NA|172aa|down_2|NC_017584.1_536042_536558_+	cd04695, Nudix_Hydrolase_36, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X	NA|96aa|down_3|NC_017584.1_536568_536856_-	TIGR02684, conserved_hypothetical_protein, probable addiction module antidote protein	NA|99aa|down_4|NC_017584.1_536857_537154_-	TIGR02683, Uncharacterized_protein_HI_1419, putative addiction module killer protein	NA|226aa|down_5|NC_017584.1_537510_538188_+	pfam01891, CbiM, Cobalt uptake substrate-specific transmembrane region	NA|236aa|down_6|NC_017584.1_538507_539215_+	pfam14281, PDDEXK_4, PD-(D/E)XK nuclease superfamily	NA|226aa|down_7|NC_017584.1_539216_539894_+	NA	NA|209aa|down_8|NC_017584.1_540015_540642_-	COG2085, COG2085, Predicted dinucleotide-binding enzymes [General function prediction only]	NA|298aa|down_9|NC_017584.1_540747_541641_+	cd08477, PBP2_CrgA_like_8, The C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator CrgA-like, contains the type 2 periplasmic binding fold
GCF_000225955.1_ASM22595v1	NC_017584	Rhodospirillum rubrum F11, complete sequence	7	989382-991847	7,7,5	PILER-CR,CRISPRCasFinder,CRT	no	cas3,cas5,cas8c,cas7,cas4,cas1,cas2	cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,csb2gr5,csm3gr7,csm4gr5,cas10,csa3,cas9,DEDDh,cas8c,cas4,cas6,WYL,DinG	 Type I-U?,Type I-C,Type I-U	GTCGCCCCCTTCACGGGGGCGTGGATCGAAAC,GTCGCCCCCTTCACGGGGGCGTGGATCGAAAC,GTCGCCCCCTTCACGGGGGCGTGGATCGAAAC	32,32,32	0	0	NA	NA	I-C:I-C:I-C	36,37,37	37	TypeI-U,TypeI-U?,TypeI-C	cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,csb2gr5,csm3gr7,csm4gr5,cas10,csa3,cas9,DEDDh,cas8c,cas4,cas6,WYL,DinG	NA,NA|143aa|down_0|NC_017584.1_992380_992809_-,NA|86aa|down_6|NC_017584.1_1002440_1002698_+	NA|153aa|up_9|NC_017584.1_977820_978279_-	pfam13471, Transglut_core3, Transglutaminase-like superfamily	NA|93aa|up_8|NC_017584.1_978275_978554_-	pfam05402, PqqD, Coenzyme PQQ synthesis protein D (PqqD)	NA|302aa|up_7|NC_017584.1_978772_979678_+	pfam08007, Cupin_4, Cupin superfamily protein	cas3|753aa|up_6|NC_017584.1_981430_983689_+	cd17930, DEXHc_cas3, DEXH/Q-box helicase domain of Cas3	cas5|222aa|up_5|NC_017584.1_983700_984366_+	cd09752, Cas5_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas8c|608aa|up_4|NC_017584.1_984362_986186_+	cd09757, Cas8c_I-C, CRISPR/Cas system-associated protein Cas8c	cas7|318aa|up_3|NC_017584.1_986182_987136_+	pfam05107, Cas_Cas7, CRISPR-associated protein Cas7	cas4|229aa|up_2|NC_017584.1_987156_987843_+	TIGR00372, conserved_hypothetical_protein, CRISPR-associated protein Cas4	cas1|345aa|up_1|NC_017584.1_987839_988874_+	TIGR03640, cas1_DVULG, CRISPR-associated endonuclease Cas1, subtype I-C/DVULG	cas2|97aa|up_0|NC_017584.1_988886_989177_+	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	NA|143aa|down_0|NC_017584.1_992380_992809_-	NA	NA|1086aa|down_1|NC_017584.1_992801_996059_-	cd09914, RocCOR, Ras of complex proteins (Roc) C-terminal of Roc (COR) domain family	NA|672aa|down_2|NC_017584.1_996370_998386_-	TIGR01783, Ferrienterobactin_receptor, TonB-dependent siderophore receptor	NA|328aa|down_3|NC_017584.1_998547_999531_+	COG2207, AraC, AraC-type DNA-binding domain-containing proteins [Transcription]	NA|440aa|down_4|NC_017584.1_999780_1001100_+	cd17485, MFS_MFSD3, Major facilitator superfamily domain containing 3 protein	NA|297aa|down_5|NC_017584.1_1001351_1002242_+	COG2207, AraC, AraC-type DNA-binding domain-containing proteins [Transcription]	NA|86aa|down_6|NC_017584.1_1002440_1002698_+	NA	NA|578aa|down_7|NC_017584.1_1002694_1004428_+	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]	NA|570aa|down_8|NC_017584.1_1004424_1006134_+	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]	NA|733aa|down_9|NC_017584.1_1006243_1008442_+	COG4773, FhuE, Outer membrane receptor for ferric coprogen and ferric-rhodotorulic acid [Inorganic ion transport and metabolism]
GCF_000225955.1_ASM22595v1	NC_017584	Rhodospirillum rubrum F11, complete sequence	8	1281858-1282021	8	CRISPRCasFinder	no		cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,csb2gr5,csm3gr7,csm4gr5,cas10,csa3,cas9,DEDDh,cas8c,cas4,cas6,WYL,DinG	Orphan	GCCGCCGCCCGAACCCGAGCCGC	23	0	0	NA	NA	NA	3	3	Orphan	cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,csb2gr5,csm3gr7,csm4gr5,cas10,csa3,cas9,DEDDh,cas8c,cas4,cas6,WYL,DinG	NA,NA	NA|118aa|up_9|NC_017584.1_1274271_1274625_+	COG3027, zapA, Cell division protein ZapA (stimulator of FtsZ polymerization and Z-ring component) [Cell cycle control, cell division,    chromosome partitioning]	NA|251aa|up_8|NC_017584.1_1274873_1275626_+	TIGR02727, Uncharacterized_protein_YqgN, 5,10-methenyltetrahydrofolate synthetase	NA|273aa|up_7|NC_017584.1_1275622_1276441_+	pfam13277, YmdB, YmdB-like protein	NA|250aa|up_6|NC_017584.1_1276714_1277464_+	PRK00110, PRK00110, YebC/PmpR family DNA-binding transcriptional regulator	NA|170aa|up_5|NC_017584.1_1277460_1277970_+	PRK00039, ruvC, Holliday junction resolvase; Reviewed	NA|213aa|up_4|NC_017584.1_1277966_1278605_+	PRK00116, ruvA, Holliday junction branch migration protein RuvA	NA|351aa|up_3|NC_017584.1_1278608_1279661_+	PRK00080, ruvB, Holliday junction branch migration DNA helicase RuvB	NA|150aa|up_2|NC_017584.1_1279657_1280107_+	TIGR02799, Acyl-CoA_thioesterase_YbgC, tol-pal system-associated acyl-CoA thioesterase	NA|309aa|up_1|NC_017584.1_1280129_1281056_+	TIGR02796, Protein_TolQ, TolQ protein	NA|167aa|up_0|NC_017584.1_1281083_1281584_+	COG0848, ExbD, Biopolymer transport protein [Intracellular trafficking and secretion]	NA|444aa|down_0|NC_017584.1_1282971_1284303_+	PRK05137, tolB, Tol-Pal system protein TolB	NA|162aa|down_1|NC_017584.1_1284455_1284941_+	TIGR02802, Peptidoglycan-associated_lipoprotein, peptidoglycan-associated lipoprotein	NA|280aa|down_2|NC_017584.1_1285358_1286198_+	COG1729, COG1729, Uncharacterized protein conserved in bacteria [Function unknown]	NA|463aa|down_3|NC_017584.1_1286211_1287600_+	cd01992, PP-ATPase, N-terminal domain of predicted ATPase of the PP-loop faimly implicated in cell cycle control [Cell division and chromosome partitioning]	NA|641aa|down_4|NC_017584.1_1287739_1289662_+	TIGR01241, ATP-dependent_zinc_metalloprotease_FtsH, ATP-dependent metalloprotease FtsH	NA|397aa|down_5|NC_017584.1_1289666_1290857_+	cd00739, DHPS, DHPS subgroup of Pterin binding enzymes	NA|453aa|down_6|NC_017584.1_1291009_1292368_+	PRK14315, glmM, phosphoglucosamine mutase; Provisional	NA|689aa|down_7|NC_017584.1_1292421_1294488_-	pfam13598, DUF4139, Domain of unknown function (DUF4139)	NA|272aa|down_8|NC_017584.1_1294736_1295552_+	pfam08543, Phos_pyr_kin, Phosphomethylpyrimidine kinase	NA|278aa|down_9|NC_017584.1_1295548_1296382_+	COG0384, COG0384, Predicted epimerase, PhzC/PhzF homolog [General function prediction only]
GCF_000225955.1_ASM22595v1	NC_017584	Rhodospirillum rubrum F11, complete sequence	9	1363865-1364439	8,9,6	PILER-CR,CRISPRCasFinder,CRT	no	csm3gr7,cas10,cas6,cas2,cas1	cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,csb2gr5,csm3gr7,csm4gr5,cas10,csa3,cas9,DEDDh,cas8c,cas4,cas6,WYL,DinG	Type III-B,Type III-D,Type III-C,Type III-A	GTTTCAGTCCCCTCGATGGCGGGGCATAGGGTGCGAG,GTTTCAGTCCCCTCGATGGCGGGGCATAGGGTGCGAG,GTTTCAGTCCCCTCGATGGCGGGGCATAGGGTGCGAG	37,37,37	0	0	NA	NA	NA:NA:NA	7,7,7	7	TypeIII-B,TypeIII-D,TypeIII-C,TypeIII-A	cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,csb2gr5,csm3gr7,csm4gr5,cas10,csa3,cas9,DEDDh,cas8c,cas4,cas6,WYL,DinG	NA,NA|127aa|down_2|NC_017584.1_1366114_1366495_-,NA|54aa|down_3|NC_017584.1_1366461_1366623_-,NA|47aa|down_4|NC_017584.1_1367400_1367541_+	NA|497aa|up_9|NC_017584.1_1349174_1350665_-	COG1167, ARO8, Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism]	NA|409aa|up_8|NC_017584.1_1350778_1352005_+	pfam03594, BenE, Benzoate membrane transport protein	NA|284aa|up_7|NC_017584.1_1352016_1352868_+	cd01173, pyridoxal_pyridoxamine_kinase, Pyridoxal kinase plays a key role in the synthesis of the active coenzyme pyridoxal-5'-phosphate  (PLP), by catalyzing the phosphorylation of the precursor vitamin B6  in the presence of Zn2+ and ATP	NA|422aa|up_6|NC_017584.1_1352864_1354130_+	PRK13392, PRK13392, 5-aminolevulinate synthase; Provisional	NA|395aa|up_5|NC_017584.1_1354126_1355311_+	PRK01278, argD, acetylornithine transaminase protein; Provisional	csm3gr7|797aa|up_4|NC_017584.1_1355393_1357784_-	TIGR03986, CRISPR-associated_protein, CRISPR-associated protein	csm3gr7|448aa|up_3|NC_017584.1_1357776_1359120_-	cd09726, RAMP_I_III, CRISPR/Cas system-associated RAMP superfamily protein	csm3gr7|625aa|up_2|NC_017584.1_1359112_1360987_-	cd09726, RAMP_I_III, CRISPR/Cas system-associated RAMP superfamily protein	cas10|542aa|up_1|NC_017584.1_1360986_1362612_-	COG1353, COG1353, Predicted CRISPR-associated polymerase [Defense mechanisms]	cas6|302aa|up_0|NC_017584.1_1362781_1363687_-	pfam10040, CRISPR_Cas6, CRISPR-associated endoribonuclease Cas6	cas2|125aa|down_0|NC_017584.1_1364647_1365022_-	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	cas1|372aa|down_1|NC_017584.1_1365050_1366166_-	pfam01867, Cas_Cas1, CRISPR associated protein Cas1	NA|127aa|down_2|NC_017584.1_1366114_1366495_-	NA	NA|54aa|down_3|NC_017584.1_1366461_1366623_-	NA	NA|47aa|down_4|NC_017584.1_1367400_1367541_+	NA	NA|30aa|down_5|NC_017584.1_1368292_1368382_+	PRK14759, PRK14759, K(+)-transporting ATPase subunit F	NA|570aa|down_6|NC_017584.1_1368443_1370153_+	pfam03814, KdpA, Potassium-transporting ATPase A subunit	NA|683aa|down_7|NC_017584.1_1370162_1372211_+	PRK01122, PRK01122, potassium-transporting ATPase subunit KdpB	NA|194aa|down_8|NC_017584.1_1372221_1372803_+	pfam02669, KdpC, K+-transporting ATPase, c chain	NA|898aa|down_9|NC_017584.1_1372884_1375578_+	COG2205, KdpD, Osmosensitive K+ channel histidine kinase [Signal transduction mechanisms]
GCF_000225955.1_ASM22595v1	NC_017584	Rhodospirillum rubrum F11, complete sequence	10	1580591-1581961	9,10,7	PILER-CR,CRISPRCasFinder,CRT	no		cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,csb2gr5,csm3gr7,csm4gr5,cas10,csa3,cas9,DEDDh,cas8c,cas4,cas6,WYL,DinG	Orphan	CGGTTCATCCCCGCGTGTGCGGGGAACAG,CGGTTCATCCCCGCGTGTGCGGGGAACAG,CGGTTCATCCCCGCGTGTGCGGGGAACAG	29,29,29	0	0	NA	NA	I-E:I-E:I-E	22,22,22	22	Orphan	cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,csb2gr5,csm3gr7,csm4gr5,cas10,csa3,cas9,DEDDh,cas8c,cas4,cas6,WYL,DinG	NA,NA	NA|242aa|up_9|NC_017584.1_1568903_1569629_+	COG0619, CbiQ, ABC-type cobalt transport system, permease component CbiQ and related transporters [Inorganic ion transport and metabolism]	NA|188aa|up_8|NC_017584.1_1569568_1570132_+	COG1268, BioY, Uncharacterized conserved protein [General function prediction only]	NA|149aa|up_7|NC_017584.1_1570354_1570801_-	PRK05571, PRK05571, ribose-5-phosphate isomerase B; Provisional	NA|354aa|up_6|NC_017584.1_1571351_1572413_+	COG1172, AraH, Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components [Carbohydrate transport and metabolism]	NA|334aa|up_5|NC_017584.1_1572475_1573477_+	cd20001, PBP1_LsrB_Quorum_Sensing-like, ligand-binding protein LsrB-like of ABC transporter periplasmic binding protein	NA|528aa|up_4|NC_017584.1_1573645_1575229_+	COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]	NA|344aa|up_3|NC_017584.1_1575225_1576257_+	COG1172, AraH, Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components [Carbohydrate transport and metabolism]	NA|331aa|up_2|NC_017584.1_1576274_1577267_-	COG2390, DeoR, Transcriptional regulator, contains sigma factor-related N-terminal domain [Transcription]	NA|335aa|up_1|NC_017584.1_1577908_1578913_+	PRK14479, PRK14479, dihydroxyacetone kinase; Provisional	NA|214aa|up_0|NC_017584.1_1578909_1579551_+	PRK14479, PRK14479, dihydroxyacetone kinase; Provisional	NA|504aa|down_0|NC_017584.1_1582245_1583757_-	COG5476, COG5476, Uncharacterized conserved protein [Function unknown]	NA|263aa|down_1|NC_017584.1_1583897_1584686_+	TIGR02431, p-hydroxybenzoate_hydroxylase_transcriptional, beta-ketoadipate pathway transcriptional regulators, PcaR/PcaU/PobR family	NA|285aa|down_2|NC_017584.1_1584826_1585681_+	cd00958, DhnA, Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs)	NA|527aa|down_3|NC_017584.1_1585704_1587285_-	cd07782, FGGY_YpCarbK_like, Yersinia Pseudotuberculosis carbohydrate kinase-like subgroup; belongs to the FGGY family of carbohydrate kinases	NA|235aa|down_4|NC_017584.1_1587538_1588243_-	COG1802, GntR, Transcriptional regulators [Transcription]	NA|277aa|down_5|NC_017584.1_1588337_1589168_+	pfam01925, TauE, Sulfite exporter TauE/SafE	NA|529aa|down_6|NC_017584.1_1589218_1590805_+	COG0405, Ggt, Gamma-glutamyltransferase [Amino acid transport and metabolism]	NA|422aa|down_7|NC_017584.1_1590892_1592158_+	COG0025, NhaP, NhaP-type Na+/H+ and K+/H+ antiporters [Inorganic ion transport and metabolism]	NA|451aa|down_8|NC_017584.1_1592602_1593955_+	pfam11299, DUF3100, Protein of unknown function (DUF3100)	NA|64aa|down_9|NC_017584.1_1594092_1594284_+	pfam11450, DUF3008, Protein of unknwon function (DUF3008)
GCF_000225955.1_ASM22595v1	NC_017584	Rhodospirillum rubrum F11, complete sequence	11	1694053-1695967	11,8,10	CRISPRCasFinder,CRT,PILER-CR	no		cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,csb2gr5,csm3gr7,csm4gr5,cas10,csa3,cas9,DEDDh,cas8c,cas4,cas6,WYL,DinG	Orphan	GTTTCAATCCACGCCCCCGTGAGGGAGCGAC,GTTTCAATCCACGCCCCCGTGAGGGAGCGAC,GTCGCTCCC-TCACGGGGGCGTGGATTGAAAC	31,31,32	0	0	NA	NA	I-C:I-C:NA	29,29,28	29	Orphan	cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,csb2gr5,csm3gr7,csm4gr5,cas10,csa3,cas9,DEDDh,cas8c,cas4,cas6,WYL,DinG	NA,NA|160aa|down_7|NC_017584.1_1705924_1706404_+	NA|362aa|up_9|NC_017584.1_1684100_1685186_+	COG3261, HycE, Ni,Fe-hydrogenase III large subunit [Energy production and conversion]	NA|191aa|up_8|NC_017584.1_1685636_1686209_+	cd10554, HycB_like, HycB, HydN and similar proteins	NA|640aa|up_7|NC_017584.1_1686228_1688148_+	cd01915, CODH, Carbon monoxide dehydrogenase (CODH) is found in acetogenic and methanogenic organisms and is responsible for the synthesis and breakdown of acetyl-CoA, respectively	NA|264aa|up_6|NC_017584.1_1688215_1689007_+	cd02034, CooC1, accessory protein CooC1	NA|67aa|up_5|NC_017584.1_1689006_1689207_+	pfam10133, RNA_bind_2, Predicted RNA-binding protein	NA|116aa|up_4|NC_017584.1_1689203_1689551_+	PRK10019, PRK10019, nickel/cobalt efflux transporter RcnA	NA|223aa|up_3|NC_017584.1_1689688_1690357_+	COG0664, Crp, cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms]	NA|297aa|up_2|NC_017584.1_1690353_1691244_-	cd01572, QPRTase, Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes	NA|533aa|up_1|NC_017584.1_1691240_1692839_-	PRK07512, PRK07512, L-aspartate oxidase; Provisional	NA|349aa|up_0|NC_017584.1_1692843_1693890_-	PRK09375, PRK09375, quinolinate synthase NadA	NA|446aa|down_0|NC_017584.1_1696160_1697498_-	COG2204, AtoC, Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]	NA|618aa|down_1|NC_017584.1_1697494_1699348_-	COG4191, COG4191, Signal transduction histidine kinase regulating C4-dicarboxylate transport system [Signal transduction mechanisms]	NA|448aa|down_2|NC_017584.1_1699626_1700970_+	PRK01663, PRK01663, C4-dicarboxylate transporter DctA; Reviewed	NA|185aa|down_3|NC_017584.1_1701077_1701632_+	COG1595, RpoE, DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog [Transcription]	NA|329aa|down_4|NC_017584.1_1701704_1702691_+	COG3712, FecR, periplasmic ferric-dicitrate binding protein FecR, regulates iron transport through sigma-19 [Inorganic ion transport and metabolism, Signal transduction mechanisms]	NA|829aa|down_5|NC_017584.1_1702826_1705313_+	COG4773, FhuE, Outer membrane receptor for ferric coprogen and ferric-rhodotorulic acid [Inorganic ion transport and metabolism]	NA|148aa|down_6|NC_017584.1_1705409_1705853_-	COG1846, MarR, Transcriptional regulators [Transcription]	NA|160aa|down_7|NC_017584.1_1705924_1706404_+	NA	NA|319aa|down_8|NC_017584.1_1706398_1707355_-	pfam13578, Methyltransf_24, Methyltransferase domain	NA|630aa|down_9|NC_017584.1_1707875_1709765_+	PRK09102, PRK09102, ribonucleoside-diphosphate reductase subunit alpha
GCF_000225955.1_ASM22595v1	NC_017584	Rhodospirillum rubrum F11, complete sequence	12	2073546-2073690	12	CRISPRCasFinder	no		cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,csb2gr5,csm3gr7,csm4gr5,cas10,csa3,cas9,DEDDh,cas8c,cas4,cas6,WYL,DinG	Orphan	GCCACCAGCACCTGCGGCTGCGGGACCTCGTTCTCGATTTAAGCGGCGGCCC	52	0	0	NA	NA	NA	1	1	Orphan	cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,csb2gr5,csm3gr7,csm4gr5,cas10,csa3,cas9,DEDDh,cas8c,cas4,cas6,WYL,DinG	NA,NA|234aa|down_1|NC_017584.1_2074515_2075217_-	NA|424aa|up_9|NC_017584.1_2062285_2063557_-	PRK05431, PRK05431, seryl-tRNA synthetase; Provisional	NA|324aa|up_8|NC_017584.1_2063646_2064618_-	COG0805, TatC, Sec-independent protein secretion pathway component TatC [Intracellular trafficking and secretion]	NA|151aa|up_7|NC_017584.1_2064663_2065116_-	TIGR01410, Sec-independent_protein_translocase_protein_tatB	NA|97aa|up_6|NC_017584.1_2065192_2065483_-	PRK00720, tatA, twin-arginine translocase TatA/TatE family subunit	NA|240aa|up_5|NC_017584.1_2065756_2066476_-	pfam04079, SMC_ScpB, Segregation and condensation complex subunit ScpB	NA|271aa|up_4|NC_017584.1_2066472_2067285_-	COG1354, scpA, Rec8/ScpA/Scc1-like protein (kleisin family) [Replication,    recombination, and repair]	NA|229aa|up_3|NC_017584.1_2067305_2067992_-	cd06158, S2P-M50_like_1, Uncharacterized homologs of Site-2 protease (S2P), zinc metalloproteases (MEROPS family M50) which cleave transmembrane domains of substrate proteins, regulating intramembrane proteolysis (RIP) of diverse signal transduction mechanisms	NA|382aa|up_2|NC_017584.1_2068000_2069146_-	COG1472, BglX, Beta-glucosidase-related glycosidases [Carbohydrate transport and metabolism]	NA|593aa|up_1|NC_017584.1_2070079_2071858_-	PRK01611, argS, arginyl-tRNA synthetase; Reviewed	NA|399aa|up_0|NC_017584.1_2071854_2073051_-	PRK01286, PRK01286, deoxyguanosinetriphosphate triphosphohydrolase-like protein; Provisional	NA|157aa|down_0|NC_017584.1_2073705_2074176_-	cd00305, Cu-Zn_Superoxide_Dismutase, Copper/zinc superoxide dismutase (SOD)	NA|234aa|down_1|NC_017584.1_2074515_2075217_-	NA	NA|267aa|down_2|NC_017584.1_2075263_2076064_+	cd09086, ExoIII-like_AP-endo, Escherichia coli exonuclease III (ExoIII) and Neisseria meningitides NExo-like subfamily of the ExoIII family purinic/apyrimidinic (AP) endonucleases	NA|129aa|down_3|NC_017584.1_2076105_2076492_+	COG3671, COG3671, Predicted membrane protein [Function unknown]	NA|618aa|down_4|NC_017584.1_2076675_2078529_-	PRK12448, PRK12448, dihydroxy-acid dehydratase; Provisional	NA|220aa|down_5|NC_017584.1_2078636_2079296_-	COG0664, Crp, cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms]	NA|146aa|down_6|NC_017584.1_2079571_2080009_+	cd17586, REC_PFxFATGY, phosphoacceptor receiver (REC) domain of PFxFATGY motif single-domain (stand-alone) response regulators	NA|349aa|down_7|NC_017584.1_2080152_2081199_+	COG1858, MauG, Cytochrome c peroxidase [Inorganic ion transport and metabolism]	NA|372aa|down_8|NC_017584.1_2081262_2082378_-	COG0842, COG0842, ABC-type multidrug transport system, permease component [Defense mechanisms]	NA|377aa|down_9|NC_017584.1_2082379_2083510_-	pfam12698, ABC2_membrane_3, ABC-2 family transporter protein
GCF_000225955.1_ASM22595v1	NC_017584	Rhodospirillum rubrum F11, complete sequence	13	2668113-2669657	11,13,9	PILER-CR,CRISPRCasFinder,CRT	no	csa3	cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,csb2gr5,csm3gr7,csm4gr5,cas10,csa3,cas9,DEDDh,cas8c,cas4,cas6,WYL,DinG	Type I-A	GTTTCAGTCCCCTCGGTGGCGGGGCATAGGCTGCGAG,CTCGCAGCCTATGCCCCGCCACCGAGGGGACTGAAAC,CTCGCAGCCNATGCCCCGCCANCGAGGGGACTGAAAC	37,37,37	0	0	NA	NA	NA:NA:NA	20,20,20	20	Orphan	cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,csb2gr5,csm3gr7,csm4gr5,cas10,csa3,cas9,DEDDh,cas8c,cas4,cas6,WYL,DinG	NA,NA|112aa|down_7|NC_017584.1_2677887_2678223_+,NA|97aa|down_8|NC_017584.1_2678209_2678500_+	NA|182aa|up_9|NC_017584.1_2657599_2658145_+	COG1738, yhhQ, Uncharacterized member of the PurR regulon [General function prediction only]	NA|310aa|up_8|NC_017584.1_2658199_2659129_-	TIGR02152, Putative_ribokinase, ribokinase	NA|367aa|up_7|NC_017584.1_2659132_2660233_-	cd09269, deoxyribose_mutarotase, deoxyribose mutarotase_like	NA|336aa|up_6|NC_017584.1_2660262_2661270_-	COG1172, AraH, Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components [Carbohydrate transport and metabolism]	NA|326aa|up_5|NC_017584.1_2661284_2662262_-	COG1172, AraH, Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components [Carbohydrate transport and metabolism]	NA|499aa|up_4|NC_017584.1_2662274_2663771_-	COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]	NA|350aa|up_3|NC_017584.1_2663887_2664937_-	cd20001, PBP1_LsrB_Quorum_Sensing-like, ligand-binding protein LsrB-like of ABC transporter periplasmic binding protein	NA|239aa|up_2|NC_017584.1_2665081_2665798_-	PRK00507, PRK00507, deoxyribose-phosphate aldolase; Provisional	NA|260aa|up_1|NC_017584.1_2666100_2666880_+	PRK10681, PRK10681, DNA-binding transcriptional repressor DeoR; Provisional	NA|236aa|up_0|NC_017584.1_2667050_2667758_+	cd07515, HAD-like, uncharacterized family of the haloacid dehalogenase-like (HAD) hydrolase superfamily	NA|117aa|down_0|NC_017584.1_2669861_2670212_-	pfam17336, DUF5368, Family of unknown function (DUF5368)	NA|446aa|down_1|NC_017584.1_2670229_2671567_-	COG0446, HcaD, Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]	csa3|111aa|down_2|NC_017584.1_2671747_2672080_-	smart00418, HTH_ARSR, helix_turn_helix, Arsenical Resistance Operon Repressor	NA|555aa|down_3|NC_017584.1_2672192_2673857_+	TIGR03385, Coenzyme_A_disulfide_reductase, CoA-disulfide reductase	NA|193aa|down_4|NC_017584.1_2673942_2674521_+	pfam11845, DUF3365, Protein of unknown function (DUF3365)	NA|263aa|down_5|NC_017584.1_2674569_2675358_-	COG1414, IclR, Transcriptional regulator [Transcription]	NA|720aa|down_6|NC_017584.1_2675614_2677774_+	TIGR01783, Ferrienterobactin_receptor, TonB-dependent siderophore receptor	NA|112aa|down_7|NC_017584.1_2677887_2678223_+	NA	NA|97aa|down_8|NC_017584.1_2678209_2678500_+	NA	NA|556aa|down_9|NC_017584.1_2678519_2680187_+	pfam03929, PepSY_TM, PepSY-associated TM region
GCF_000225955.1_ASM22595v1	NC_017584	Rhodospirillum rubrum F11, complete sequence	14	2715965-2716300	12,14,10	PILER-CR,CRISPRCasFinder,CRT	no	csb2gr5,cas4	cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,csb2gr5,csm3gr7,csm4gr5,cas10,csa3,cas9,DEDDh,cas8c,cas4,cas6,WYL,DinG	Unclear	GTTTCAATGAGGCCGAGGCATTACTGCCTCGGGAGAC,GTCTCCCGAGGCAGTAATGCCTCGGCCTCATTGAAAC,GTCTCCCGAGGCAGTAATGCCTCGGCCTCATTGAAAC	37,37,37	0	0	NA	NA	NA:NA:NA	4,4,4	4	Unclear	cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,csb2gr5,csm3gr7,csm4gr5,cas10,csa3,cas9,DEDDh,cas8c,cas4,cas6,WYL,DinG	NA|133aa|up_1|NC_017584.1_2714550_2714949_+,NA	NA|495aa|up_9|NC_017584.1_2701714_2703199_+	smart00283, MA, Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer)	NA|313aa|up_8|NC_017584.1_2703328_2704267_-	cd05231, NmrA_TMR_like_1_SDR_a, NmrA (a transcriptional regulator) and triphenylmethane reductase (TMR) like proteins, subgroup 1, atypical (a) SDRs	NA|279aa|up_7|NC_017584.1_2704344_2705181_+	cd06124, cupin_NimR-like_N, AraC/XylS family transcriptional regulators similar to NimR, N-terminal cupin domain	NA|422aa|up_6|NC_017584.1_2705324_2706590_-	cd17485, MFS_MFSD3, Major facilitator superfamily domain containing 3 protein	NA|710aa|up_5|NC_017584.1_2706639_2708769_-	cd01347, ligand_gated_channel, TonB dependent/Ligand-Gated channels are created by a monomeric 22 strand (22,24) anti-parallel beta-barrel	NA|293aa|up_4|NC_017584.1_2709471_2710350_-	COG2207, AraC, AraC-type DNA-binding domain-containing proteins [Transcription]	NA|583aa|up_3|NC_017584.1_2710556_2712305_-	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]	NA|604aa|up_2|NC_017584.1_2712301_2714113_-	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]	NA|133aa|up_1|NC_017584.1_2714550_2714949_+	NA	csb2gr5|286aa|up_0|NC_017584.1_2714977_2715835_+	TIGR02165, CRISPR-associated_protein_GSU0054_family, CRISPR-associated protein GSU0054/csb2, Dpsyc system	cas4|334aa|down_0|NC_017584.1_2716562_2717564_+	TIGR00372, conserved_hypothetical_protein, CRISPR-associated protein Cas4	NA|295aa|down_1|NC_017584.1_2717730_2718615_-	pfam18588, WcbI, Polysaccharide biosynthesis enzyme WcbI	NA|344aa|down_2|NC_017584.1_2718666_2719698_-	cd03823, GT4_ExpE7-like, glycosyltransferase ExpE7 and similar proteins	NA|301aa|down_3|NC_017584.1_2719716_2720619_-	pfam04773, FecR, FecR protein	NA|459aa|down_4|NC_017584.1_2720667_2722044_-	sd00006, TPR, Tetratricopeptide repeat	NA|1838aa|down_5|NC_017584.1_2722264_2727778_+	cd03823, GT4_ExpE7-like, glycosyltransferase ExpE7 and similar proteins	NA|288aa|down_6|NC_017584.1_2727774_2728638_+	pfam13578, Methyltransf_24, Methyltransferase domain	NA|311aa|down_7|NC_017584.1_2728598_2729531_-	pfam13649, Methyltransf_25, Methyltransferase domain	NA|558aa|down_8|NC_017584.1_2729597_2731271_+	pfam05711, TylF, Macrocin-O-methyltransferase (TylF)	NA|534aa|down_9|NC_017584.1_2738116_2739718_-	sd00006, TPR, Tetratricopeptide repeat
GCF_000225955.1_ASM22595v1	NC_017584	Rhodospirillum rubrum F11, complete sequence	15	3143761-3144000	15	CRISPRCasFinder	no		cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,csb2gr5,csm3gr7,csm4gr5,cas10,csa3,cas9,DEDDh,cas8c,cas4,cas6,WYL,DinG	Orphan	CGCCGAAAAGCCCAAGCGCAAGCGCGCCGCCCCGCGCAAAAAGGCCGAAGC	51	0	0	NA	NA	NA	2	2	Orphan	cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,csb2gr5,csm3gr7,csm4gr5,cas10,csa3,cas9,DEDDh,cas8c,cas4,cas6,WYL,DinG	NA|124aa|up_8|NC_017584.1_3130800_3131172_-,NA	NA|265aa|up_9|NC_017584.1_3129999_3130794_-	PRK10673, PRK10673, esterase	NA|124aa|up_8|NC_017584.1_3130800_3131172_-	NA	NA|151aa|up_7|NC_017584.1_3131398_3131851_-	COG1607, COG1607, Acyl-CoA hydrolase [Lipid metabolism]	NA|666aa|up_6|NC_017584.1_3131975_3133973_+	PRK05559, PRK05559, DNA topoisomerase IV subunit B; Reviewed	NA|171aa|up_5|NC_017584.1_3133992_3134505_-	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|207aa|up_4|NC_017584.1_3134489_3135110_-	pfam00440, TetR_N, Bacterial regulatory proteins, tetR family	NA|350aa|up_3|NC_017584.1_3136048_3137098_+	pfam04471, Mrr_cat, Restriction endonuclease	NA|368aa|up_2|NC_017584.1_3137964_3139068_+	COG1835, COG1835, Predicted acyltransferases [Lipid metabolism]	NA|368aa|up_1|NC_017584.1_3139484_3140588_+	COG1835, COG1835, Predicted acyltransferases [Lipid metabolism]	NA|190aa|up_0|NC_017584.1_3140757_3141327_-	cd01012, YcaC_related, YcaC related amidohydrolases; E	NA|554aa|down_0|NC_017584.1_3144086_3145748_+	TIGR03394, Indole-3-pyruvate_decarboxylase, indolepyruvate/phenylpyruvate decarboxylase, Azospirillum family	NA|63aa|down_1|NC_017584.1_3145803_3145992_-	COG1143, NuoI, Formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreductase 23 kD subunit (chain I) [Energy production and conversion]	NA|596aa|down_2|NC_017584.1_3146391_3148179_+	TIGR03710, OAFO_sf, 2-oxoacid:acceptor oxidoreductase, alpha subunit	NA|277aa|down_3|NC_017584.1_3148181_3149012_+	PRK11867, PRK11867, 2-oxoglutarate ferredoxin oxidoreductase subunit beta; Reviewed	NA|168aa|down_4|NC_017584.1_3149132_3149636_+	cd01045, Ferritin_like_AB, Uncharacterized family of ferritin-like proteins found in archaea and bacteria	NA|238aa|down_5|NC_017584.1_3149717_3150431_+	COG0400, COG0400, Predicted esterase [General function prediction only]	NA|835aa|down_6|NC_017584.1_3150535_3153040_+	PRK13557, PRK13557, histidine kinase; Provisional	NA|648aa|down_7|NC_017584.1_3153036_3154980_+	cd19923, REC_CheY_CheY3, phosphoacceptor receiver (REC) domain of chemotaxis response regulator CheY3 and similar CheY family proteins	NA|264aa|down_8|NC_017584.1_3155046_3155838_-	COG5473, COG5473, Predicted integral membrane protein [Function unknown]	NA|227aa|down_9|NC_017584.1_3155960_3156641_-	pfam07298, NnrU, NnrU protein
GCF_000225955.1_ASM22595v1	NC_017584	Rhodospirillum rubrum F11, complete sequence	16	3524497-3525372	13,16,11	PILER-CR,CRISPRCasFinder,CRT	no		cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,csb2gr5,csm3gr7,csm4gr5,cas10,csa3,cas9,DEDDh,cas8c,cas4,cas6,WYL,DinG	Orphan	GTTTCAGTCCCCTCGATAGCGGGGCAAGGGCTGCGAG,CTCGCAGCCCTTGCCCCGCTATCGAGGGGACTGAAAC,CTCGCAGCCCTTGCCCCGCTATCGAGGGGACTGAAAC	37,37,37	0	0	NA	NA	NA:NA:NA	9,11,11	11	Orphan	cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,csb2gr5,csm3gr7,csm4gr5,cas10,csa3,cas9,DEDDh,cas8c,cas4,cas6,WYL,DinG	NA|183aa|up_8|NC_017584.1_3515600_3516149_-,NA|72aa|up_0|NC_017584.1_3523909_3524125_+,NA|307aa|down_0|NC_017584.1_3525451_3526372_-	NA|376aa|up_9|NC_017584.1_3514106_3515234_-	PRK13579, gcvT, glycine cleavage system aminomethyltransferase GcvT	NA|183aa|up_8|NC_017584.1_3515600_3516149_-	NA	NA|322aa|up_7|NC_017584.1_3516319_3517285_+	PRK05231, PRK05231, homoserine kinase; Provisional	NA|167aa|up_6|NC_017584.1_3517281_3517782_+	PRK00203, rnhA, ribonuclease H; Reviewed	NA|291aa|up_5|NC_017584.1_3517792_3518665_-	PRK11689, PRK11689, aromatic amino acid efflux DMT transporter YddG	NA|487aa|up_4|NC_017584.1_3518795_3520256_-	PRK10504, PRK10504, putative transporter; Provisional	NA|160aa|up_3|NC_017584.1_3520326_3520806_-	cd03013, PRX5_like, Peroxiredoxin (PRX) family, PRX5-like subfamily; members are similar to the human protein, PRX5, a homodimeric TRX peroxidase, widely expressed in tissues and found cellularly in mitochondria, peroxisomes and the cytosol	NA|716aa|up_2|NC_017584.1_3520874_3523022_-	COG4232, COG4232, Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]	NA|193aa|up_1|NC_017584.1_3523174_3523753_+	COG1678, COG1678, Putative transcriptional regulator [Transcription]	NA|72aa|up_0|NC_017584.1_3523909_3524125_+	NA	NA|307aa|down_0|NC_017584.1_3525451_3526372_-	NA	NA|672aa|down_1|NC_017584.1_3526473_3528489_-	cd03681, MM_CoA_mutase_MeaA, Coenzyme B12-dependent-methylmalonyl coenzyme A (CoA) mutase (MCM) family, MeaA-like subfamily; contains various methylmalonyl coenzyme A (CoA) mutase (MCM)-like proteins similar to the Streptomyces cinnamonensis MeaA, Methylobacterium extorquens MeaA and Streptomyces collinus B12-dependent mutase	NA|428aa|down_2|NC_017584.1_3528707_3529991_+	cd08246, crotonyl_coA_red, crotonyl-CoA reductase	NA|564aa|down_3|NC_017584.1_3530088_3531780_+	cd01158, SCAD_SBCAD, Short chain acyl-CoA dehydrogenases and eukaryotic short/branched chain acyl-CoA dehydrogenases	NA|99aa|down_4|NC_017584.1_3531968_3532265_+	COG2944, COG2944, Predicted transcriptional regulator [Transcription]	NA|199aa|down_5|NC_017584.1_3532428_3533025_+	COG2249, MdaB, Putative NADPH-quinone reductase (modulator of drug activity B) [General function prediction only]	NA|200aa|down_6|NC_017584.1_3533036_3533636_+	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|96aa|down_7|NC_017584.1_3533711_3533999_-	TIGR02607, Virulence-associated_protein_I, addiction module antidote protein, HigA family	NA|93aa|down_8|NC_017584.1_3534003_3534282_-	COG3549, HigB, Plasmid maintenance system killer protein [General function prediction only]	NA|159aa|down_9|NC_017584.1_3534591_3535068_-	COG1522, Lrp, Transcriptional regulators [Transcription]
