assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000224985.1_ASM22498v1	NC_015975	Lactobacillus ruminis ATCC 27782, complete sequence	1	172571-172763	1	CRISPRCasFinder	no		Cas14u_CAS-V,DinG,cas3,DEDDh,cas14j,cas2,cas1,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6,cas4,cas5,cas7,cas8b2,csa3,WYL	Orphan	GCCTTGAAAGTAGAATAAAAATCCAAAAAATTGAGAAAATGTTCTAC	47	0	0	NA	NA	NA	1	1	Orphan	Cas14u_CAS-V,DinG,cas3,DEDDh,cas14j,cas2,cas1,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6,cas4,cas5,cas7,cas8b2,csa3,WYL	NA|201aa|up_7|NC_015975.1_164288_164891_-,NA	NA|487aa|up_9|NC_015975.1_161729_163190_+	TIGR03025, EPS_sugtrans, exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase	NA|328aa|up_8|NC_015975.1_163249_164233_+	pfam00535, Glycos_transf_2, Glycosyl transferase family 2	NA|201aa|up_7|NC_015975.1_164288_164891_-	NA	NA|404aa|up_6|NC_015975.1_164887_166099_-	pfam13304, AAA_21, AAA domain, putative AbiEii toxin, Type IV TA system	NA|624aa|up_5|NC_015975.1_166302_168174_-	cd07544, P-type_ATPase_HM, P-type heavy metal-transporting ATPase; uncharacterized subfamily	NA|242aa|up_4|NC_015975.1_168463_169189_+	cd02516, CDP-ME_synthetase, CDP-ME synthetase is involved in mevalonate-independent isoprenoid production	NA|354aa|up_3|NC_015975.1_169181_170243_+	cd05230, UGD_SDR_e, UDP-glucuronate decarboxylase (UGD) and related proteins, extended (e) SDRs	NA|146aa|up_2|NC_015975.1_170276_170714_+	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|279aa|up_1|NC_015975.1_170691_171528_+	COG1284, COG1284, Uncharacterized conserved protein [Function unknown]	NA|243aa|up_0|NC_015975.1_171616_172345_+	TIGR03716, R_switched_YkoY, integral membrane protein, YkoY family	NA|178aa|down_0|NC_015975.1_173227_173761_+	cd04301, NAT_SF, N-Acyltransferase superfamily: Various enzymes that characteristically catalyze the transfer of an acyl group to a substrate	NA|272aa|down_1|NC_015975.1_173890_174706_+	cd07516, HAD_Pase, phosphatase, similar to Escherichia coli Cof and Thermotoga maritima TM0651; belongs to the haloacid dehalogenase-like superfamily	NA|113aa|down_2|NC_015975.1_174745_175084_+	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|120aa|down_3|NC_015975.1_175533_175893_+	COG0239, CrcB, Integral membrane protein possibly involved in chromosome condensation [Cell division and chromosome partitioning]	NA|113aa|down_4|NC_015975.1_175889_176228_+	COG0239, CrcB, Integral membrane protein possibly involved in chromosome condensation [Cell division and chromosome partitioning]	NA|288aa|down_5|NC_015975.1_176262_177126_+	COG1307, DegV, Uncharacterized protein conserved in bacteria [Function unknown]	NA|225aa|down_6|NC_015975.1_177729_178404_+	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|319aa|down_7|NC_015975.1_178400_179357_+	cd16948, HATPase_BceS-YxdK-YvcQ-like, Histidine kinase-like ATPase domain of two-component sensor histidine kinases similar to Bacillus subtilis BceS, YxdK, and Bacillus thuringiensis YvcQ	NA|249aa|down_8|NC_015975.1_179454_180201_+	COG1136, SalX, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]	NA|642aa|down_9|NC_015975.1_180214_182140_+	pfam02687, FtsX, FtsX-like permease family
GCF_000224985.1_ASM22498v1	NC_015975	Lactobacillus ruminis ATCC 27782, complete sequence	2	1047155-1048214	2,1,1	CRISPRCasFinder,CRT,PILER-CR	no	cas2,cas1,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6,DEDDh	Cas14u_CAS-V,DinG,cas3,DEDDh,cas14j,cas2,cas1,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6,cas4,cas5,cas7,cas8b2,csa3,WYL	Type III-C,Type III-B,Type III-D,Type III-A	GTTTTCGTCTCCTTCACTCGGAGATAGGTAATTATC,GTTTTCGTCTCCTTCACTCGGAGATAGGTAATTATC,GTTTTCGTCTCCTTCACTCGGAGATAGGTAATTATC	36,36,36	0	0	NA	NA	NA:NA:NA	14,14,13	14	TypeIII-C,TypeIII-B,TypeIII-D,TypeIII-A	Cas14u_CAS-V,DinG,cas3,DEDDh,cas14j,cas2,cas1,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6,cas4,cas5,cas7,cas8b2,csa3,WYL	NA|71aa|up_9|NC_015975.1_1038636_1038849_-,NA	NA|71aa|up_9|NC_015975.1_1038636_1038849_-	NA	cas2|102aa|up_8|NC_015975.1_1039090_1039396_-	TIGR01573, cas2, CRISPR-associated endonuclease Cas2	cas1|303aa|up_7|NC_015975.1_1039395_1040304_-	TIGR03639, cas1_NMENI, CRISPR-associated endonuclease Cas1, subtype II/NMENI	csm5gr7|348aa|up_6|NC_015975.1_1040300_1041344_-	cd09662, Csm5_III-A, CRISPR/Cas system-associated RAMP superfamily protein Csm5	csm4gr5|307aa|up_5|NC_015975.1_1041324_1042245_-	pfam17953, Csm4_C, CRISPR Csm4 C-terminal domain	csm3gr7|223aa|up_4|NC_015975.1_1042250_1042919_-	cd09684, Csm3_III-A, CRISPR/Cas system-associated RAMP superfamily protein Csm3	csm2gr11|146aa|up_3|NC_015975.1_1042930_1043368_-	pfam03750, Csm2_III-A, Csm2 Type III-A	cas10|759aa|up_2|NC_015975.1_1043372_1045649_-	cd09680, Cas10_III, CRISPR/Cas system-associated protein Cas10	cas6|256aa|up_1|NC_015975.1_1045626_1046394_-	COG5551, COG5551, CRISPR system related protein, RAMP superfamily [Defense    mechanisms]	NA|55aa|up_0|NC_015975.1_1046520_1046685_-	pfam05717, TnpB_IS66, IS66 Orf2 like protein	NA|256aa|down_0|NC_015975.1_1048784_1049552_-	COG0566, SpoU, rRNA methylases [Translation, ribosomal structure and biogenesis]	NA|320aa|down_1|NC_015975.1_1049553_1050513_-	PRK05627, PRK05627, bifunctional riboflavin kinase/FAD synthetase	NA|306aa|down_2|NC_015975.1_1050525_1051443_-	PRK01550, truB, tRNA pseudouridine synthase B; Provisional	NA|119aa|down_3|NC_015975.1_1051501_1051858_-	PRK00521, rbfA, 30S ribosome-binding factor RbfA	NA|774aa|down_4|NC_015975.1_1051876_1054198_-	PRK05306, infB, translation initiation factor IF-2; Validated	NA|102aa|down_5|NC_015975.1_1054261_1054567_-	PRK07283, PRK07283, YlxQ-related RNA-binding protein	NA|100aa|down_6|NC_015975.1_1054556_1054856_-	pfam04296, DUF448, Protein of unknown function (DUF448)	NA|402aa|down_7|NC_015975.1_1054870_1056076_-	PRK12327, nusA, transcription elongation factor NusA; Provisional	NA|158aa|down_8|NC_015975.1_1056096_1056570_-	PRK00092, PRK00092, ribosome maturation protein RimP; Reviewed	DEDDh|1450aa|down_9|NC_015975.1_1056730_1061080_-	PRK00448, polC, DNA polymerase III PolC; Validated
GCF_000224985.1_ASM22498v1	NC_015975	Lactobacillus ruminis ATCC 27782, complete sequence	3	1066225-1068633	3,2,2,3	CRISPRCasFinder,CRT,PILER-CR,PILER-CR	no	DEDDh,cas2,cas1,cas4,cas3,cas5,cas7,cas8b2,cas6,Cas14u_CAS-V	Cas14u_CAS-V,DinG,cas3,DEDDh,cas14j,cas2,cas1,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6,cas4,cas5,cas7,cas8b2,csa3,WYL	Unclear	ATTTACATTCCTCATCAGTTAGATAAAAAC,ATTTACATTCCTCATCAGTTAGATAAAAAC,TTTACATTCCTCATCAGTTAGATAAAAAC,ATTTACATTCCTCATCAGTTAGATAAAAAC	30,30,29,30	2	4	1067247-1067281|1067247-1067282|1067247-1067282|1067247-1067282	NC_015975.1_248969-249003|NC_015975.1_248969-249004|NC_015975.1_527667-527632|NC_015975.1_733201-733166	NA:NA:NA:NA	36,36,33,33	36	Unclear	Cas14u_CAS-V,DinG,cas3,DEDDh,cas14j,cas2,cas1,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6,cas4,cas5,cas7,cas8b2,csa3,WYL	NA|67aa|up_0|NC_015975.1_1064507_1064708_-,NA	NA|102aa|up_9|NC_015975.1_1054261_1054567_-	PRK07283, PRK07283, YlxQ-related RNA-binding protein	NA|100aa|up_8|NC_015975.1_1054556_1054856_-	pfam04296, DUF448, Protein of unknown function (DUF448)	NA|402aa|up_7|NC_015975.1_1054870_1056076_-	PRK12327, nusA, transcription elongation factor NusA; Provisional	NA|158aa|up_6|NC_015975.1_1056096_1056570_-	PRK00092, PRK00092, ribosome maturation protein RimP; Reviewed	DEDDh|1450aa|up_5|NC_015975.1_1056730_1061080_-	PRK00448, polC, DNA polymerase III PolC; Validated	NA|293aa|up_4|NC_015975.1_1061248_1062127_+	cd07208, Pat_hypo_Ecoli_yjju_like, Hypothetical patatin similar to yjju protein of Escherichia coli	NA|93aa|up_3|NC_015975.1_1062199_1062478_-	cd14014, STKc_PknB_like, Catalytic domain of bacterial Serine/Threonine kinases, PknB and similar proteins	NA|520aa|up_2|NC_015975.1_1062585_1064145_-	pfam03050, DDE_Tnp_IS66, Transposase IS66 family	NA|81aa|up_1|NC_015975.1_1064263_1064506_-	pfam05717, TnpB_IS66, IS66 Orf2 like protein	NA|67aa|up_0|NC_015975.1_1064507_1064708_-	NA	cas2|108aa|down_0|NC_015975.1_1068814_1069138_-	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	cas1|330aa|down_1|NC_015975.1_1069100_1070090_-	TIGR03641, cas1_HMARI, CRISPR-associated endonuclease Cas1, subtype I-B/HMARI/TNEAP	cas4|163aa|down_2|NC_015975.1_1070107_1070596_-	pfam01930, Cas_Cas4, Domain of unknown function DUF83	cas3|771aa|down_3|NC_015975.1_1070619_1072932_-	TIGR01587, CRISPR-associated_endonuclease/helicase_Cas3, CRISPR-associated helicase Cas3	cas5|257aa|down_4|NC_015975.1_1072994_1073765_-	cd09658, Cas5_I-B, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas7|302aa|down_5|NC_015975.1_1073751_1074657_-	TIGR02585, conserved_protein, CRISPR-associated protein Cas7/Cst2/DevR, subtype I-B/TNEAP	cas8b2|584aa|down_6|NC_015975.1_1074660_1076412_-	cd09665, Cas8a1_I-A, CRISPR/Cas system-associated protein Cas8a1	cas6|249aa|down_7|NC_015975.1_1076415_1077162_-	cd09652, Cas6-I-III, CRISPR/Cas system-associated RAMP superfamily protein Cas6	NA|226aa|down_8|NC_015975.1_1077290_1077968_-	pfam12978, DUF3862, Domain of Unknown Function with PDB structure (DUF3862)	NA|184aa|down_9|NC_015975.1_1078019_1078571_-	pfam07463, NUMOD4, NUMOD4 motif
GCF_000224985.1_ASM22498v1	NC_015975	Lactobacillus ruminis ATCC 27782, complete sequence	4	1717458-1717652	4	CRISPRCasFinder	no		Cas14u_CAS-V,DinG,cas3,DEDDh,cas14j,cas2,cas1,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6,cas4,cas5,cas7,cas8b2,csa3,WYL	Orphan	CCGAAAGTAGACAAAAACCGGTGGGAATGTCTGATTTTTGTCTACCG	47	0	0	NA	NA	NA	1	1	Orphan	Cas14u_CAS-V,DinG,cas3,DEDDh,cas14j,cas2,cas1,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6,cas4,cas5,cas7,cas8b2,csa3,WYL	NA|47aa|up_9|NC_015975.1_1699061_1699202_+,NA|60aa|up_0|NC_015975.1_1716762_1716942_+,NA|67aa|down_3|NC_015975.1_1722713_1722914_+	NA|47aa|up_9|NC_015975.1_1699061_1699202_+	NA	NA|890aa|up_8|NC_015975.1_1700556_1703226_+	cd02089, P-type_ATPase_Ca_prok, prokaryotic P-type Ca(2+)-ATPase similar to Synechococcus elongatus sp	NA|275aa|up_7|NC_015975.1_1703603_1704428_-	COG1737, RpiR, Transcriptional regulators [Transcription]	NA|328aa|up_6|NC_015975.1_1704437_1705421_-	COG0673, MviM, Predicted dehydrogenases and related proteins [General function prediction only]	NA|216aa|up_5|NC_015975.1_1705417_1706065_-	cd01398, RPI_A, RPI_A: Ribose 5-phosphate isomerase type A (RPI_A) subfamily; RPI catalyzes the reversible conversion of ribose-5-phosphate to ribulose 5-phosphate, the first step of the non-oxidative branch of the pentose phosphate pathway	NA|218aa|up_4|NC_015975.1_1706757_1707411_-	cd06165, Sortase_A, Sortase domain found in class A sortases	NA|1245aa|up_3|NC_015975.1_1707423_1711158_-	TIGR02785, ATP-dependent_helicase/nuclease_subunit_A, helicase-exonuclease AddAB, AddA subunit, Firmicutes type	NA|1171aa|up_2|NC_015975.1_1711159_1714672_-	TIGR02773, ATP-dependent_helicase/deoxyribonuclease_subunit_B, helicase-exonuclease AddAB, AddB subunit	NA|439aa|up_1|NC_015975.1_1715035_1716352_-	cd00585, Peptidase_C1B, Peptidase C1B subfamily (MEROPS database nomenclature); composed of eukaryotic bleomycin hydrolases (BH) and bacterial aminopeptidases C (pepC)	NA|60aa|up_0|NC_015975.1_1716762_1716942_+	NA	NA|322aa|down_0|NC_015975.1_1718254_1719220_-	PRK01259, PRK01259, ribose-phosphate diphosphokinase	NA|397aa|down_1|NC_015975.1_1719445_1720636_-	COG1167, ARO8, Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism]	NA|455aa|down_2|NC_015975.1_1721186_1722551_+	pfam05525, Branch_AA_trans, Branched-chain amino acid transport protein	NA|67aa|down_3|NC_015975.1_1722713_1722914_+	NA	NA|111aa|down_4|NC_015975.1_1722915_1723248_+	pfam05717, TnpB_IS66, IS66 Orf2 like protein	NA|520aa|down_5|NC_015975.1_1723277_1724837_+	pfam03050, DDE_Tnp_IS66, Transposase IS66 family	NA|443aa|down_6|NC_015975.1_1725752_1727081_-	cd05681, M20_dipept_Sso-CP2, uncharacterized M20 dipeptidase	NA|426aa|down_7|NC_015975.1_1727608_1728886_+	COG2873, MET17, O-acetylhomoserine sulfhydrylase [Amino acid transport and metabolism]	NA|297aa|down_8|NC_015975.1_1729581_1730472_+	COG0657, Aes, Esterase/lipase [Lipid metabolism]	NA|463aa|down_9|NC_015975.1_1730869_1732258_-	PRK13805, PRK13805, bifunctional acetaldehyde-CoA/alcohol dehydrogenase; Provisional
GCF_000224985.1_ASM22498v1	NC_015975	Lactobacillus ruminis ATCC 27782, complete sequence	5	1904738-1904849	5	CRISPRCasFinder	no		Cas14u_CAS-V,DinG,cas3,DEDDh,cas14j,cas2,cas1,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6,cas4,cas5,cas7,cas8b2,csa3,WYL	Orphan	AGTAGAACAAAATCATCCAAAATTGAGAAAATGTTCTAC	39	1	1	1904777-1904810	NC_015975.1_1804589-1804622	NA	1	1	Orphan	Cas14u_CAS-V,DinG,cas3,DEDDh,cas14j,cas2,cas1,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6,cas4,cas5,cas7,cas8b2,csa3,WYL	NA,NA|156aa|down_0|NC_015975.1_1905219_1905687_-,NA|217aa|down_2|NC_015975.1_1906341_1906992_-,NA|245aa|down_3|NC_015975.1_1906988_1907723_-,NA|232aa|down_4|NC_015975.1_1907709_1908405_-,NA|140aa|down_5|NC_015975.1_1908558_1908978_-	NA|191aa|up_9|NC_015975.1_1894872_1895445_-	cd03674, Nudix_Hydrolase_1, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X	NA|439aa|up_8|NC_015975.1_1895493_1896810_-	PRK09034, PRK09034, aspartate kinase; Reviewed	NA|248aa|up_7|NC_015975.1_1897266_1898010_-	pfam06570, DUF1129, Protein of unknown function (DUF1129)	NA|368aa|up_6|NC_015975.1_1898163_1899267_-	PRK09601, PRK09601, redox-regulated ATPase YchF	NA|64aa|up_5|NC_015975.1_1899291_1899483_-	pfam06107, DUF951, Bacterial protein of unknown function (DUF951)	NA|294aa|up_4|NC_015975.1_1899494_1900376_-	TIGR04285, parB-like_partition_protein, nucleoid occlusion protein	NA|259aa|up_3|NC_015975.1_1900356_1901133_-	pfam13614, AAA_31, AAA domain	NA|282aa|up_2|NC_015975.1_1901145_1901991_-	TIGR04285, parB-like_partition_protein, nucleoid occlusion protein	NA|246aa|up_1|NC_015975.1_1902009_1902747_-	PRK00107, gidB, 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG	NA|311aa|up_0|NC_015975.1_1902923_1903856_+	COG0657, Aes, Esterase/lipase [Lipid metabolism]	NA|156aa|down_0|NC_015975.1_1905219_1905687_-	NA	NA|221aa|down_1|NC_015975.1_1905667_1906330_-	cd03268, ABC_BcrA_bacitracin_resist, ATP-binding cassette domain of the bacitracin-resistance transporter	NA|217aa|down_2|NC_015975.1_1906341_1906992_-	NA	NA|245aa|down_3|NC_015975.1_1906988_1907723_-	NA	NA|232aa|down_4|NC_015975.1_1907709_1908405_-	NA	NA|140aa|down_5|NC_015975.1_1908558_1908978_-	NA	NA|77aa|down_6|NC_015975.1_1909101_1909332_+	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|292aa|down_7|NC_015975.1_1909844_1910720_+	cd01020, TroA_b, Metal binding protein TroA_b	NA|219aa|down_8|NC_015975.1_1910738_1911395_+	cd03235, ABC_Metallic_Cations, ATP-binding cassette domain of the metal-type transporters	NA|267aa|down_9|NC_015975.1_1911394_1912195_+	COG1108, ZnuB, ABC-type Mn2+/Zn2+ transport systems, permease components [Inorganic ion transport and metabolism]
