assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000224575.1_ASM22457v1	NC_017376	Helicobacter pylori SNT49, complete genome	1	375348-375491	1	CRISPRCasFinder	no		cas3,cas2,csx1,DEDDh	Orphan	AGAAAGGCTCTCTAGCGTTACTGAAGAAATCATTTCAAAAAAACAAGAAGAATT	54	0	0	NA	NA	NA	1	1	Orphan	cas3,cas2,csx1,DEDDh	NA|102aa|up_0|NC_017376.1_374663_374969_+,NA	NA|181aa|up_9|NC_017376.1_368545_369088_+	TIGR03585, PseH, UDP-4-amino-4,6-dideoxy-N-acetyl-beta-L-altrosamine N-acetyltransferase	NA|313aa|up_8|NC_017376.1_369020_369959_-	COG1663, LpxK, Tetraacyldisaccharide-1-P 4'-kinase [Cell envelope biogenesis, outer membrane]	NA|261aa|up_7|NC_017376.1_369955_370738_-	PRK13980, PRK13980, NAD synthetase; Provisional	NA|331aa|up_6|NC_017376.1_370995_371988_+	PRK05479, PRK05479, ketol-acid reductoisomerase; Provisional	NA|269aa|up_5|NC_017376.1_372011_372818_+	COG2894, MinD, Septum formation inhibitor-activating ATPase [Cell division and chromosome partitioning]	NA|78aa|up_4|NC_017376.1_372814_373048_+	TIGR01215, Cell_division_topological_specificity_factor, cell division topological specificity factor MinE	NA|267aa|up_3|NC_017376.1_373054_373855_+	TIGR00732, Protein_smf, DNA protecting protein DprA	NA|135aa|up_2|NC_017376.1_373851_374256_+	PRK00109, PRK00109, Holliday junction resolvase RuvX	NA|63aa|up_1|NC_017376.1_374352_374541_+	sd00010, SLR, Sel1-like repeat	NA|102aa|up_0|NC_017376.1_374663_374969_+	NA	NA|294aa|down_0|NC_017376.1_375602_376484_-	COG0564, RluA, Pseudouridylate synthases, 23S RNA-specific [Translation, ribosomal structure and biogenesis]	NA|517aa|down_1|NC_017376.1_376483_378034_-	TIGR00644, recJ, single-stranded-DNA-specific exonuclease RecJ	NA|539aa|down_2|NC_017376.1_378042_379659_-	PRK05380, pyrG, CTP synthetase; Validated	NA|223aa|down_3|NC_017376.1_379916_380585_+	cd03392, PAP2_like_2, PAP2_like_2 proteins	NA|568aa|down_4|NC_017376.1_380628_382332_+	TIGR00206, Flagellar_M-ring_protein, flagellar basal-body M-ring protein/flagellar hook-basal body protein (fliF)	NA|344aa|down_5|NC_017376.1_382349_383381_+	TIGR00207, Flagellar_motor_switch_protein_FliG, flagellar motor switch protein FliG	NA|259aa|down_6|NC_017376.1_383367_384144_+	PRK06669, fliH, flagellar assembly protein H; Validated	NA|619aa|down_7|NC_017376.1_384140_385997_+	TIGR00204, 1-deoxy-D-xylulose-5-phosphate_synthase, 1-deoxy-D-xylulose-5-phosphate synthase	NA|603aa|down_8|NC_017376.1_385993_387802_+	PRK05433, PRK05433, GTP-binding protein LepA; Provisional	NA|252aa|down_9|NC_017376.1_387816_388572_+	pfam13020, DUF3883, Domain of unknown function (DUF3883)
GCF_000224575.1_ASM22457v1	NC_017376	Helicobacter pylori SNT49, complete genome	2	972795-972994	1,2	CRT,CRISPRCasFinder	no		cas3,cas2,csx1,DEDDh	Orphan	CTTCAATCAAGGGACTTATAATTTTAATA,TTCAATCAAGGGACTTATCATTTTAAT	29,27	0	0	NA	NA	I-B:I-B	3,3	3	Orphan	cas3,cas2,csx1,DEDDh	NA,NA|220aa|down_8|NC_017376.1_985680_986340_+	NA|383aa|up_9|NC_017376.1_954213_955362_+	COG0827, COG0827, Adenine-specific DNA methylase [DNA replication, recombination, and repair]	NA|676aa|up_8|NC_017376.1_955355_957383_+	COG0210, UvrD, Superfamily I DNA and RNA helicases [DNA replication, recombination, and repair]	NA|520aa|up_7|NC_017376.1_957930_959490_+	pfam01856, HP_OMP, Helicobacter outer membrane protein	NA|530aa|up_6|NC_017376.1_959511_961101_+	pfam01856, HP_OMP, Helicobacter outer membrane protein	NA|515aa|up_5|NC_017376.1_961917_963462_-	pfam02521, HP_OMP_2, Putative outer membrane protein	NA|814aa|up_4|NC_017376.1_963708_966150_-	TIGR01786, hemoglobin-haptoglobin-binding_protein, TonB-dependent hemoglobin/transferrin/lactoferrin receptor family protein	NA|144aa|up_3|NC_017376.1_966320_966752_-	pfam01300, Sua5_yciO_yrdC, Telomere recombination	NA|1086aa|up_2|NC_017376.1_966756_970014_-	PRK05294, carB, carbamoyl-phosphate synthase large subunit	NA|231aa|up_1|NC_017376.1_970101_970794_-	cd10432, BI-1-like_bacterial, Bacterial BAX inhibitor (BI)-1/YccA-like proteins	NA|333aa|up_0|NC_017376.1_970937_971936_+	TIGR01534, Glyceraldehyde-3-phosphate_dehydrogenase, glyceraldehyde-3-phosphate dehydrogenase, type I	NA|370aa|down_0|NC_017376.1_979242_980352_+	pfam01856, HP_OMP, Helicobacter outer membrane protein	NA|69aa|down_1|NC_017376.1_980417_980624_-	TIGR00013, Probable_tautomerase_K2, 4-oxalocrotonate tautomerase family enzyme	NA|194aa|down_2|NC_017376.1_980771_981353_+	TIGR00615, Recombination_protein_RecR, recombination protein RecR	NA|382aa|down_3|NC_017376.1_981349_982495_+	TIGR00094, tRNA_pseudouridine_synthase_D, tRNA pseudouridine synthase, TruD family	NA|327aa|down_4|NC_017376.1_982433_983414_+	PRK02870, PRK02870, heat shock protein HtpX; Provisional	NA|181aa|down_5|NC_017376.1_983414_983957_+	TIGR00063, GTP_cyclohydrolase_1, GTP cyclohydrolase I	NA|304aa|down_6|NC_017376.1_983972_984884_+	COG0142, IspA, Geranylgeranyl pyrophosphate synthase [Coenzyme metabolism]	NA|268aa|down_7|NC_017376.1_984880_985684_+	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional	NA|220aa|down_8|NC_017376.1_985680_986340_+	NA	NA|201aa|down_9|NC_017376.1_986341_986944_+	COG0720, COG0720, 6-pyruvoyl-tetrahydropterin synthase [Coenzyme metabolism]
GCF_000224575.1_ASM22457v1	NC_017376	Helicobacter pylori SNT49, complete genome	3	1539420-1539528	3	CRISPRCasFinder	no	DEDDh	cas3,cas2,csx1,DEDDh	Unclear	TTTTGTTGTAAAACTTATTTTTTTAA	26	0	0	NA	NA	NA	1	1	Orphan	cas3,cas2,csx1,DEDDh	NA|116aa|up_8|NC_017376.1_1530711_1531059_+,NA|481aa|up_5|NC_017376.1_1532626_1534069_-,NA|99aa|down_8|NC_017376.1_1553522_1553819_+	NA|624aa|up_9|NC_017376.1_1528758_1530630_-	TIGR00643, ATP-dependent_DNA_helicase_RecG, ATP-dependent DNA helicase RecG	NA|116aa|up_8|NC_017376.1_1530711_1531059_+	NA	NA|212aa|up_7|NC_017376.1_1531062_1531698_+	pfam01856, HP_OMP, Helicobacter outer membrane protein	NA|251aa|up_6|NC_017376.1_1531694_1532447_-	PRK13911, PRK13911, exodeoxyribonuclease III; Provisional	NA|481aa|up_5|NC_017376.1_1532626_1534069_-	NA	NA|456aa|up_4|NC_017376.1_1534297_1535665_-	TIGR00362, DnaA, chromosomal replication initiator protein DnaA	NA|181aa|up_3|NC_017376.1_1535816_1536359_+	COG0775, Pfs, Nucleoside phosphorylase [Nucleotide transport and metabolism]	NA|80aa|up_2|NC_017376.1_1536394_1536634_+	pfam10398, DUF2443, Protein of unknown function (DUF2443)	NA|598aa|up_1|NC_017376.1_1536634_1538428_+	TIGR01135, glmS, glucosamine--fructose-6-phosphate aminotransferase (isomerizing)	NA|209aa|up_0|NC_017376.1_1538451_1539078_+	COG1351, THY1, Predicted alternative thymidylate synthase [Nucleotide transport and metabolism]	NA|112aa|down_0|NC_017376.1_1541376_1541712_+	pfam01863, DUF45, Protein of unknown function DUF45	NA|842aa|down_1|NC_017376.1_1541800_1544326_-	COG4772, FecA, Outer membrane receptor for Fe3+-dicitrate [Inorganic ion transport and metabolism]	NA|323aa|down_2|NC_017376.1_1544679_1545648_-	TIGR01229, rocF_arginase, arginase	NA|381aa|down_3|NC_017376.1_1545851_1546994_+	COG0686, Ald, Alanine dehydrogenase [Amino acid transport and metabolism]	NA|243aa|down_4|NC_017376.1_1548844_1549573_-	pfam01856, HP_OMP, Helicobacter outer membrane protein	NA|285aa|down_5|NC_017376.1_1549757_1550612_+	COG0061, nadF, NAD kinase [Coenzyme metabolism]	NA|525aa|down_6|NC_017376.1_1550626_1552201_+	COG0497, RecN, ATPase involved in DNA repair [DNA replication, recombination, and repair]	NA|436aa|down_7|NC_017376.1_1552197_1553505_+	COG1293, COG1293, Predicted RNA-binding protein homologous to eukaryotic snRNP [Transcription]	NA|99aa|down_8|NC_017376.1_1553522_1553819_+	NA	DEDDh|288aa|down_9|NC_017376.1_1554333_1555197_-	PRK08517, PRK08517, 3'-5' exonuclease
