assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000223885.1_ASM22388v1	NC_015947	Stenotrophomonas maltophilia JV3, complete genome	1	443581-443672	1	CRISPRCasFinder	no		cas3,DEDDh,csa3,WYL,Cas9_archaeal,DinG	Orphan	CCCCGGCGGCCGATGCCGCCGCC	23	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,csa3,WYL,Cas9_archaeal,DinG	NA|171aa|up_5|NC_015947.1_439464_439977_-,NA|168aa|up_4|NC_015947.1_440009_440513_-,NA|77aa|up_2|NC_015947.1_441432_441663_-,NA|134aa|down_0|NC_015947.1_444465_444867_-,NA|278aa|down_1|NC_015947.1_445074_445908_+,NA|193aa|down_6|NC_015947.1_452081_452660_+,NA|123aa|down_7|NC_015947.1_452834_453203_-,NA|74aa|down_8|NC_015947.1_453687_453909_-,NA|200aa|down_9|NC_015947.1_454116_454716_+	NA|455aa|up_9|NC_015947.1_432192_433557_+	cd16348, VOC_YdcJ_like, uncharacterized metal-dependent enzyme similar to Shigella flexneri YdcJ	NA|505aa|up_8|NC_015947.1_433719_435234_-	TIGR03458, Propionyl-CoA:succinate_CoA_transferase, succinate CoA transferase	NA|932aa|up_7|NC_015947.1_435608_438404_+	PRK11072, PRK11072, bifunctional [glutamate--ammonia ligase]-adenylyl-L-tyrosine phosphorylase/[glutamate--ammonia-ligase] adenylyltransferase	NA|187aa|up_6|NC_015947.1_438828_439389_-	COG1738, yhhQ, Uncharacterized member of the PurR regulon [General function prediction only]	NA|171aa|up_5|NC_015947.1_439464_439977_-	NA	NA|168aa|up_4|NC_015947.1_440009_440513_-	NA	NA|284aa|up_3|NC_015947.1_440532_441384_-	COG4727, COG4727, Uncharacterized protein conserved in bacteria [Function unknown]	NA|77aa|up_2|NC_015947.1_441432_441663_-	NA	NA|320aa|up_1|NC_015947.1_441767_442727_-	pfam06258, Mito_fiss_Elm1, Mitochondrial fission ELM1	NA|197aa|up_0|NC_015947.1_442853_443444_+	PRK05365, PRK05365, malonic semialdehyde reductase; Provisional	NA|134aa|down_0|NC_015947.1_444465_444867_-	NA	NA|278aa|down_1|NC_015947.1_445074_445908_+	NA	NA|266aa|down_2|NC_015947.1_446202_447000_-	cd06193, siderophore_interacting, Siderophore interacting proteins share the domain structure of the ferredoxin reductase like family	NA|187aa|down_3|NC_015947.1_447060_447621_-	COG1695, COG1695, Predicted transcriptional regulators [Transcription]	NA|896aa|down_4|NC_015947.1_448166_450854_+	PRK09405, aceE, pyruvate dehydrogenase subunit E1; Reviewed	NA|387aa|down_5|NC_015947.1_450924_452085_+	pfam13304, AAA_21, AAA domain, putative AbiEii toxin, Type IV TA system	NA|193aa|down_6|NC_015947.1_452081_452660_+	NA	NA|123aa|down_7|NC_015947.1_452834_453203_-	NA	NA|74aa|down_8|NC_015947.1_453687_453909_-	NA	NA|200aa|down_9|NC_015947.1_454116_454716_+	NA
GCF_000223885.1_ASM22388v1	NC_015947	Stenotrophomonas maltophilia JV3, complete genome	2	473572-473694	2	CRISPRCasFinder	no		cas3,DEDDh,csa3,WYL,Cas9_archaeal,DinG	Orphan	GGCATCCACGCATGGCGTGGATCTACTGTGGGCCGGG	37	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,csa3,WYL,Cas9_archaeal,DinG	NA|127aa|up_7|NC_015947.1_467166_467547_-,NA|140aa|up_6|NC_015947.1_467616_468036_-,NA|95aa|up_5|NC_015947.1_468126_468411_+,NA|507aa|down_6|NC_015947.1_481836_483357_-,NA|72aa|down_9|NC_015947.1_486191_486407_-	NA|323aa|up_9|NC_015947.1_465287_466256_+	cd10960, CE4_NodB_like_1, Catalytic NodB homology domain of uncharacterized bacterial polysaccharide deacetylases	NA|281aa|up_8|NC_015947.1_466259_467102_-	COG2521, COG2521, Predicted archaeal methyltransferase [General function prediction only]	NA|127aa|up_7|NC_015947.1_467166_467547_-	NA	NA|140aa|up_6|NC_015947.1_467616_468036_-	NA	NA|95aa|up_5|NC_015947.1_468126_468411_+	NA	NA|325aa|up_4|NC_015947.1_468530_469505_-	COG1230, CzcD, Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism]	NA|95aa|up_3|NC_015947.1_469555_469840_+	cd10153, RcnR-FrmR-like_DUF156, Transcriptional regulators RcnR and FrmR, and related domains; this domain family was previously known as part of DUF156	NA|124aa|up_2|NC_015947.1_469917_470289_-	pfam03203, MerC, MerC mercury resistance protein	NA|442aa|up_1|NC_015947.1_470358_471684_+	COG0523, COG0523, Putative GTPases (G3E family) [General function prediction only]	NA|536aa|up_0|NC_015947.1_471762_473370_-	COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]	NA|300aa|down_0|NC_015947.1_473710_474610_-	cd08476, PBP2_CrgA_like_7, The C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator CrgA-like, contains the type 2 periplasmic binding fold	NA|393aa|down_1|NC_015947.1_474838_476017_+	pfam00144, Beta-lactamase, Beta-lactamase	NA|395aa|down_2|NC_015947.1_476013_477198_+	COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism]	NA|539aa|down_3|NC_015947.1_477512_479129_-	COG4943, COG4943, Predicted signal transduction protein containing sensor and EAL domains [Signal transduction mechanisms]	NA|458aa|down_4|NC_015947.1_479359_480733_+	PRK11049, PRK11049, D-alanine/D-serine/glycine permease; Provisional	NA|259aa|down_5|NC_015947.1_481052_481829_+	cd00254, LT-like, lytic transglycosylase(LT)-like domain	NA|507aa|down_6|NC_015947.1_481836_483357_-	NA	NA|694aa|down_7|NC_015947.1_483517_485599_+	cd14953, NHL_like_1, Uncharacterized NHL-repeat domain in bacterial proteins	NA|136aa|down_8|NC_015947.1_485576_485984_-	COG3795, COG3795, Uncharacterized protein conserved in bacteria [Function unknown]	NA|72aa|down_9|NC_015947.1_486191_486407_-	NA
GCF_000223885.1_ASM22388v1	NC_015947	Stenotrophomonas maltophilia JV3, complete genome	3	525145-525247	3	CRISPRCasFinder	no		cas3,DEDDh,csa3,WYL,Cas9_archaeal,DinG	Orphan	GGTGGGTGCCGACCGTTGGCCGGCAC	26	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,csa3,WYL,Cas9_archaeal,DinG	NA|88aa|up_3|NC_015947.1_522279_522543_-,NA	NA|160aa|up_9|NC_015947.1_515881_516361_-	PRK11169, PRK11169, leucine-responsive transcriptional regulator Lrp	NA|435aa|up_8|NC_015947.1_516510_517815_+	PRK00711, PRK00711, D-amino acid dehydrogenase	NA|356aa|up_7|NC_015947.1_517793_518861_+	cd06827, PLPDE_III_AR_proteobact, Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes, Proteobacterial Alanine Racemases	NA|189aa|up_6|NC_015947.1_518983_519550_-	pfam11454, DUF3016, Protein of unknown function (DUF3016)	NA|663aa|up_5|NC_015947.1_519794_521783_+	PRK11091, PRK11091, aerobic respiration control sensor protein ArcB; Provisional	NA|97aa|up_4|NC_015947.1_521826_522117_+	pfam11607, DUF3247, Protein of unknown function (DUF3247)	NA|88aa|up_3|NC_015947.1_522279_522543_-	NA	NA|355aa|up_2|NC_015947.1_522701_523766_+	pfam05175, MTS, Methyltransferase small domain	NA|234aa|up_1|NC_015947.1_523762_524464_+	cd02553, PseudoU_synth_RsuA, Pseudouridine synthase, Escherichia coli RsuA like	NA|228aa|up_0|NC_015947.1_524460_525144_+	COG0637, COG0637, Predicted phosphatase/phosphohexomutase [General function prediction only]	NA|403aa|down_0|NC_015947.1_525257_526466_-	PRK07967, PRK07967, beta-ketoacyl-ACP synthase I	NA|172aa|down_1|NC_015947.1_526465_526981_-	PRK05174, PRK05174, bifunctional 3-hydroxydecanoyl-ACP dehydratase/trans-2-decenoyl-ACP isomerase	NA|365aa|down_2|NC_015947.1_527171_528266_+	PRK02406, PRK02406, DNA polymerase IV; Validated	NA|304aa|down_3|NC_015947.1_528578_529490_-	cd07739, metallo-hydrolase-like_MBL-fold, uncharacterized subgroup of the MBL-fold_metallo-hydrolase superfamily; MBL-fold metallo hydrolase domain	NA|213aa|down_4|NC_015947.1_529581_530220_-	COG2910, COG2910, Putative NADH-flavin reductase [General function prediction only]	NA|310aa|down_5|NC_015947.1_530328_531258_+	cd08422, PBP2_CrgA_like, The C-terminal substrate binding domain of LysR-type transcriptional regulator CrgA and its related homologs, contains the type 2 periplasmic binding domain	NA|264aa|down_6|NC_015947.1_531254_532046_+	pfam08241, Methyltransf_11, Methyltransferase domain	NA|223aa|down_7|NC_015947.1_532122_532791_+	PRK13222, PRK13222, N-acetylmuramic acid 6-phosphate phosphatase MupP	NA|614aa|down_8|NC_015947.1_532877_534719_-	TIGR01779, Vitamin_B12_transporter_BtuB, TonB-dependent vitamin B12 receptor	NA|193aa|down_9|NC_015947.1_535199_535778_+	pfam00300, His_Phos_1, Histidine phosphatase superfamily (branch 1)
GCF_000223885.1_ASM22388v1	NC_015947	Stenotrophomonas maltophilia JV3, complete genome	4	674210-674314	4	CRISPRCasFinder	no		cas3,DEDDh,csa3,WYL,Cas9_archaeal,DinG	Orphan	GGTGGGTGCCAACCTTGGTTGGCAC	25	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,csa3,WYL,Cas9_archaeal,DinG	NA|155aa|up_2|NC_015947.1_672639_673104_+,NA|143aa|up_1|NC_015947.1_673096_673525_+,NA|132aa|down_1|NC_015947.1_675476_675872_-,NA|213aa|down_2|NC_015947.1_675995_676634_-,NA|295aa|down_3|NC_015947.1_676635_677520_-	NA|716aa|up_9|NC_015947.1_661152_663300_+	PRK15489, nfrB, glycosyl transferase family protein	NA|945aa|up_8|NC_015947.1_663296_666131_+	pfam13283, NfrA_C, Bacteriophage N adsorption protein A C-term	NA|322aa|up_7|NC_015947.1_666124_667090_-	pfam14488, DUF4434, Domain of unknown function (DUF4434)	NA|439aa|up_6|NC_015947.1_667211_668528_-	COG2252, COG2252, Xanthine/uracil/vitamin C permease [Nucleotide transport and    metabolism]	NA|555aa|up_5|NC_015947.1_668692_670357_-	PRK11819, PRK11819, putative ABC transporter ATP-binding protein; Reviewed	NA|155aa|up_4|NC_015947.1_670610_671075_+	pfam11776, RcnB, Nickel/cobalt transporter regulator	NA|418aa|up_3|NC_015947.1_671261_672515_+	PRK00011, glyA, serine hydroxymethyltransferase; Reviewed	NA|155aa|up_2|NC_015947.1_672639_673104_+	NA	NA|143aa|up_1|NC_015947.1_673096_673525_+	NA	NA|174aa|up_0|NC_015947.1_673674_674196_+	PRK00464, nrdR, transcriptional repressor NrdR	NA|362aa|down_0|NC_015947.1_674355_675441_+	PRK10786, ribD, bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	NA|132aa|down_1|NC_015947.1_675476_675872_-	NA	NA|213aa|down_2|NC_015947.1_675995_676634_-	NA	NA|295aa|down_3|NC_015947.1_676635_677520_-	NA	NA|207aa|down_4|NC_015947.1_677667_678288_-	TIGR04273, activator_of_XA21-mediated_immunity_Ax21, sulfation-dependent quorum factor, Ax21 family	NA|209aa|down_5|NC_015947.1_678813_679440_+	PRK09289, PRK09289, riboflavin synthase	NA|367aa|down_6|NC_015947.1_679436_680537_+	PRK14019, PRK14019, bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II	NA|156aa|down_7|NC_015947.1_680732_681200_+	PRK00061, ribH, 6,7-dimethyl-8-ribityllumazine synthase; Provisional	NA|160aa|down_8|NC_015947.1_681196_681676_+	PRK00202, nusB, transcription antitermination factor NusB	NA|321aa|down_9|NC_015947.1_681796_682759_+	PRK05731, PRK05731, thiamine monophosphate kinase; Provisional
GCF_000223885.1_ASM22388v1	NC_015947	Stenotrophomonas maltophilia JV3, complete genome	5	730265-730360	5	CRISPRCasFinder	no		cas3,DEDDh,csa3,WYL,Cas9_archaeal,DinG	Orphan	TGCCATCCACGCGTGGCGTGGATCTAC	27	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,csa3,WYL,Cas9_archaeal,DinG	NA,NA|162aa|down_0|NC_015947.1_730401_730887_-	NA|911aa|up_9|NC_015947.1_719068_721801_+	PRK12904, PRK12904, preprotein translocase subunit SecA; Reviewed	NA|318aa|up_8|NC_015947.1_721914_722868_+	PRK08999, PRK08999, Nudix family hydrolase	NA|195aa|up_7|NC_015947.1_722937_723522_-	pfam13511, DUF4124, Domain of unknown function (DUF4124)	NA|276aa|up_6|NC_015947.1_723562_724390_-	TIGR00676, 510-methylenetetrahydrofolate_reductase	NA|309aa|up_5|NC_015947.1_724592_725519_+	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|350aa|up_4|NC_015947.1_725555_726605_+	COG3275, LytS, Putative regulator of cell autolysis [Signal transduction mechanisms]	NA|244aa|up_3|NC_015947.1_726601_727333_+	COG3279, LytT, Response regulator of the LytR/AlgR family [Transcription / Signal transduction mechanisms]	NA|506aa|up_2|NC_015947.1_727339_728857_-	cd01299, Met_dep_hydrolase_A, Metallo-dependent hydrolases, subgroup A is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site	NA|186aa|up_1|NC_015947.1_728993_729551_+	pfam11539, DUF3228, Protein of unknown function (DUF3228)	NA|212aa|up_0|NC_015947.1_729627_730263_+	pfam03544, TonB_C, Gram-negative bacterial TonB protein C-terminal	NA|162aa|down_0|NC_015947.1_730401_730887_-	NA	NA|158aa|down_1|NC_015947.1_730886_731360_-	cd00002, YbaK_deacylase, This CD includes cysteinyl-tRNA(Pro) deacylases from Haemophilus influenzae and Escherichia coli and other related bacterial proteins	NA|482aa|down_2|NC_015947.1_731687_733133_-	pfam05221, AdoHcyase, S-adenosyl-L-homocysteine hydrolase	NA|839aa|down_3|NC_015947.1_733373_735890_+	COG1506, DAP2, Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism]	NA|904aa|down_4|NC_015947.1_736062_738774_+	PRK00009, PRK00009, phosphoenolpyruvate carboxylase; Reviewed	NA|169aa|down_5|NC_015947.1_738861_739368_-	COG1607, COG1607, Acyl-CoA hydrolase [Lipid metabolism]	NA|404aa|down_6|NC_015947.1_739506_740718_-	PRK05250, PRK05250, S-adenosylmethionine synthetase; Validated	NA|572aa|down_7|NC_015947.1_741053_742769_+	cd07986, LPLAT_ACT14924-like, Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: Unknown ACT14924	NA|267aa|down_8|NC_015947.1_742765_743566_+	cd07398, MPP_YbbF-LpxH, Escherichia coli YbbF/LpxH and related proteins, metallophosphatase domain	NA|353aa|down_9|NC_015947.1_743770_744829_+	pfam04307, YdjM, LexA-binding, inner membrane-associated putative hydrolase
GCF_000223885.1_ASM22388v1	NC_015947	Stenotrophomonas maltophilia JV3, complete genome	6	2586155-2586254	6	CRISPRCasFinder	no		cas3,DEDDh,csa3,WYL,Cas9_archaeal,DinG	Orphan	CCGGCCAGCGGCCGGCACTACCGT	24	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,csa3,WYL,Cas9_archaeal,DinG	NA,NA	NA|383aa|up_9|NC_015947.1_2576119_2577268_-	cd03506, Delta6-FADS-like, The Delta6 Fatty Acid Desaturase (Delta6-FADS)-like CD includes the integral-membrane enzymes: delta-4, delta-5, delta-6, delta-8, delta-8-sphingolipid, and delta-11 desaturases found in vertebrates, higher plants, fungi, and bacteria	NA|370aa|up_8|NC_015947.1_2577279_2578389_-	cd06216, FNR_iron_sulfur_binding_2, Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an iron-sulfur binding cluster domain	NA|219aa|up_7|NC_015947.1_2578442_2579099_+	PRK11202, PRK11202, HTH-type transcriptional repressor FabR	NA|718aa|up_6|NC_015947.1_2579375_2581529_+	cd01347, ligand_gated_channel, TonB dependent/Ligand-Gated channels are created by a monomeric 22 strand (22,24) anti-parallel beta-barrel	NA|183aa|up_5|NC_015947.1_2581518_2582067_+	cd02964, TryX_like_family, Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX	NA|157aa|up_4|NC_015947.1_2582251_2582722_-	PRK11050, PRK11050, manganese-binding transcriptional regulator MntR	NA|444aa|up_3|NC_015947.1_2582839_2584171_+	PRK00701, PRK00701, divalent metal cation transporter MntH	NA|109aa|up_2|NC_015947.1_2584288_2584615_-	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|156aa|up_1|NC_015947.1_2584586_2585054_-	PRK09271, PRK09271, flavodoxin; Provisional	NA|347aa|up_0|NC_015947.1_2585079_2586120_-	PRK09614, nrdF, ribonucleotide-diphosphate reductase subunit beta; Reviewed	NA|788aa|down_0|NC_015947.1_2586267_2588631_-	PRK09209, PRK09209, ribonucleoside-diphosphate reductase subunit alpha	NA|326aa|down_1|NC_015947.1_2589063_2590041_+	cd08292, ETR_like_2, 2-enoyl thioester reductase (ETR) like proteins, child 2	NA|876aa|down_2|NC_015947.1_2590342_2592970_+	cd01347, ligand_gated_channel, TonB dependent/Ligand-Gated channels are created by a monomeric 22 strand (22,24) anti-parallel beta-barrel	NA|660aa|down_3|NC_015947.1_2593069_2595049_-	PRK09928, PRK09928, choline transport protein BetT; Provisional	NA|127aa|down_4|NC_015947.1_2595244_2595625_-	cd07262, VOC_like, uncharacterized subfamily of vicinal oxygen chelate (VOC) family	NA|173aa|down_5|NC_015947.1_2595775_2596294_+	PRK12528, PRK12528, RNA polymerase sigma factor; Provisional	NA|315aa|down_6|NC_015947.1_2596290_2597235_+	COG3712, FecR, periplasmic ferric-dicitrate binding protein FecR, regulates iron transport through sigma-19 [Inorganic ion transport and metabolism, Signal transduction mechanisms]	NA|983aa|down_7|NC_015947.1_2597304_2600253_+	TIGR01786, hemoglobin-haptoglobin-binding_protein, TonB-dependent hemoglobin/transferrin/lactoferrin receptor family protein	NA|108aa|down_8|NC_015947.1_2600378_2600702_-	COG2076, EmrE, Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism]	NA|118aa|down_9|NC_015947.1_2600701_2601055_-	PRK10452, PRK10452, multidrug/spermidine efflux SMR transporter subunit MdtJ
GCF_000223885.1_ASM22388v1	NC_015947	Stenotrophomonas maltophilia JV3, complete genome	7	2861902-2862010	7	CRISPRCasFinder	no	DEDDh	cas3,DEDDh,csa3,WYL,Cas9_archaeal,DinG	Unclear	AGTCGAGCATGGCTCGACTCTACAG	25	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,csa3,WYL,Cas9_archaeal,DinG	NA,NA|100aa|down_8|NC_015947.1_2870550_2870850_+,NA|105aa|down_9|NC_015947.1_2870857_2871172_+	NA|363aa|up_9|NC_015947.1_2847187_2848276_-	pfam07007, LprI, Lysozyme inhibitor LprI	NA|843aa|up_8|NC_015947.1_2848401_2850930_-	TIGR03074, PQQ_membr_DH, membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family	NA|907aa|up_7|NC_015947.1_2851061_2853782_-	PRK05560, PRK05560, DNA gyrase subunit A; Validated	NA|355aa|up_6|NC_015947.1_2853999_2855064_-	PRK05720, mtnA, methylthioribose-1-phosphate isomerase; Reviewed	NA|243aa|up_5|NC_015947.1_2855111_2855840_-	pfam11218, DUF3011, Protein of unknown function (DUF3011)	NA|319aa|up_4|NC_015947.1_2855978_2856935_-	TIGR00462, genX, EF-P lysine aminoacylase GenX	NA|162aa|up_3|NC_015947.1_2856931_2857417_-	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|822aa|up_2|NC_015947.1_2857466_2859932_-	PRK07956, ligA, NAD-dependent DNA ligase LigA; Validated	NA|375aa|up_1|NC_015947.1_2860134_2861259_+	PRK09105, PRK09105, pyridoxal phosphate-dependent aminotransferase	NA|149aa|up_0|NC_015947.1_2861384_2861831_+	COG1943, COG1943, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|246aa|down_0|NC_015947.1_2862018_2862756_-	PRK04570, PRK04570, cell division protein ZipA; Provisional	NA|1168aa|down_1|NC_015947.1_2862802_2866306_-	TIGR02168, Chromosome_partition_protein_Smc, chromosome segregation protein SMC, common bacterial type	NA|150aa|down_2|NC_015947.1_2866565_2867015_-	PRK00137, rplI, 50S ribosomal protein L9; Reviewed	NA|77aa|down_3|NC_015947.1_2867120_2867351_-	PRK00391, rpsR, 30S ribosomal protein S18; Reviewed	NA|146aa|down_4|NC_015947.1_2867362_2867800_-	PRK00453, rpsF, 30S ribosomal protein S6; Reviewed	NA|181aa|down_5|NC_015947.1_2868021_2868564_-	pfam03691, UPF0167, Uncharacterized protein family (UPF0167)	NA|113aa|down_6|NC_015947.1_2868658_2868997_-	COG0316, sufA, Fe-S cluster assembly scaffold protein [Posttranslational modification, protein turnover, chaperones]	NA|465aa|down_7|NC_015947.1_2869125_2870520_+	PRK03932, asnC, asparaginyl-tRNA synthetase; Validated	NA|100aa|down_8|NC_015947.1_2870550_2870850_+	NA	NA|105aa|down_9|NC_015947.1_2870857_2871172_+	NA
GCF_000223885.1_ASM22388v1	NC_015947	Stenotrophomonas maltophilia JV3, complete genome	8	2952451-2952557	8	CRISPRCasFinder	no		cas3,DEDDh,csa3,WYL,Cas9_archaeal,DinG	Orphan	CATCCACGCACGGCGTGGATCTAC	24	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,csa3,WYL,Cas9_archaeal,DinG	NA|113aa|up_7|NC_015947.1_2943077_2943416_-,NA	NA|114aa|up_9|NC_015947.1_2941970_2942312_+	cd03034, ArsC_ArsC, Arsenate Reductase (ArsC) family, ArsC subfamily; arsenic reductases similar to that encoded by arsC on the R733 plasmid of Escherichia coli	NA|212aa|up_8|NC_015947.1_2942383_2943019_-	COG0625, Gst, Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]	NA|113aa|up_7|NC_015947.1_2943077_2943416_-	NA	NA|506aa|up_6|NC_015947.1_2943540_2945058_-	COG1951, TtdA, Tartrate dehydratase alpha subunit/Fumarate hydratase class I, N-terminal domain [Energy production and conversion]	NA|299aa|up_5|NC_015947.1_2945213_2946110_+	TIGR02957, putative_sigma_factor, RNA polymerase sigma-70 factor, TIGR02957 family	NA|150aa|up_4|NC_015947.1_2946146_2946596_+	COG2128, COG2128, Uncharacterized conserved protein [Function unknown]	NA|624aa|up_3|NC_015947.1_2946834_2948706_+	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]	NA|260aa|up_2|NC_015947.1_2948786_2949566_+	cd06195, FNR1, Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin	NA|160aa|up_1|NC_015947.1_2949609_2950089_-	COG0386, BtuE, Glutathione peroxidase [Posttranslational modification, protein turnover, chaperones]	NA|723aa|up_0|NC_015947.1_2950219_2952388_+	cd06456, M3A_DCP, Peptidase family M3, dipeptidyl carboxypeptidase (DCP)	NA|372aa|down_0|NC_015947.1_2952563_2953679_-	PRK11705, PRK11705, cyclopropane fatty acyl phospholipid synthase	NA|294aa|down_1|NC_015947.1_2953698_2954580_-	pfam13739, DUF4163, Domain of unknown function (DUF4163)	NA|101aa|down_2|NC_015947.1_2954617_2954920_-	pfam14542, Acetyltransf_CG, GCN5-related N-acetyl-transferase	NA|209aa|down_3|NC_015947.1_2955334_2955961_-	COG0705, COG0705, Membrane associated serine protease [Amino acid transport and metabolism]	NA|522aa|down_4|NC_015947.1_2955968_2957534_-	cd17347, MFS_SLC15A1_2_like, Solute carrier family 15 members 1 and 2, and similar Major Facilitator Superfamily transporters	NA|283aa|down_5|NC_015947.1_2957696_2958545_+	pfam03372, Exo_endo_phos, Endonuclease/Exonuclease/phosphatase family	NA|204aa|down_6|NC_015947.1_2958677_2959289_-	COG0605, SodA, Superoxide dismutase [Inorganic ion transport and metabolism]	NA|151aa|down_7|NC_015947.1_2959508_2959961_+	cd00607, RNase_Sa, RNase_Sa	NA|138aa|down_8|NC_015947.1_2959960_2960374_+	cd05141, Barstar_evA4336-like, Barstar_evA4336-like contains uncharacterized sequences similar to the uncharacterized, predicted RNAase inhibitor evA4336 found in Azoarcus sp	NA|587aa|down_9|NC_015947.1_2960518_2962279_-	PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated
GCF_000223885.1_ASM22388v1	NC_015947	Stenotrophomonas maltophilia JV3, complete genome	9	3079481-3079583	9	CRISPRCasFinder	no	Cas9_archaeal,csa3	cas3,DEDDh,csa3,WYL,Cas9_archaeal,DinG	Unclear	TAAAGGGGGCGCGCCGACAGGCGC	24	0	0	NA	NA	NA	1	1	Unclear	cas3,DEDDh,csa3,WYL,Cas9_archaeal,DinG	NA|162aa|up_6|NC_015947.1_3072275_3072761_+,NA|68aa|down_2|NC_015947.1_3082544_3082748_-,NA|206aa|down_5|NC_015947.1_3084619_3085237_+,NA|121aa|down_8|NC_015947.1_3086212_3086575_+,NA|149aa|down_9|NC_015947.1_3086684_3087131_+	NA|352aa|up_9|NC_015947.1_3068825_3069881_+	COG1082, IolE, Sugar phosphate isomerases/epimerases [Carbohydrate transport and metabolism]	NA|298aa|up_8|NC_015947.1_3069902_3070796_+	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|309aa|up_7|NC_015947.1_3070785_3071712_+	pfam07859, Abhydrolase_3, alpha/beta hydrolase fold	NA|162aa|up_6|NC_015947.1_3072275_3072761_+	NA	NA|254aa|up_5|NC_015947.1_3072767_3073529_-	PRK07478, PRK07478, short chain dehydrogenase; Provisional	NA|281aa|up_4|NC_015947.1_3073661_3074504_+	PRK15435, PRK15435, bifunctional DNA-binding transcriptional regulator/O6-methylguanine-DNA methyltransferase Ada	NA|342aa|up_3|NC_015947.1_3074541_3075567_-	cd05288, PGDH, Prostaglandin dehydrogenases	NA|184aa|up_2|NC_015947.1_3076266_3076818_+	cd19438, lipocalin_Blc-like, bacterial lipocalin Blc, Arabidopsis thaliana temperature-induced lipocalin-1, and similar proteins	NA|159aa|up_1|NC_015947.1_3076982_3077459_+	pfam03168, LEA_2, Late embryogenesis abundant protein	NA|597aa|up_0|NC_015947.1_3077523_3079314_+	PTZ00456, PTZ00456, acyl-CoA dehydrogenase; Provisional	Cas9_archaeal|222aa|down_0|NC_015947.1_3079726_3080392_+	COG1403, McrA, Restriction endonuclease [Defense mechanisms]	NA|636aa|down_1|NC_015947.1_3080497_3082405_+	PRK05444, PRK05444, 1-deoxy-D-xylulose-5-phosphate synthase; Provisional	NA|68aa|down_2|NC_015947.1_3082544_3082748_-	NA	NA|186aa|down_3|NC_015947.1_3082922_3083480_-	pfam11218, DUF3011, Protein of unknown function (DUF3011)	NA|224aa|down_4|NC_015947.1_3083607_3084279_-	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|206aa|down_5|NC_015947.1_3084619_3085237_+	NA	NA|184aa|down_6|NC_015947.1_3085233_3085785_+	COG2229, COG2229, Predicted GTPase [General function prediction only]	NA|124aa|down_7|NC_015947.1_3085777_3086149_+	smart00960, Robl_LC7, Roadblock/LC7 domain	NA|121aa|down_8|NC_015947.1_3086212_3086575_+	NA	NA|149aa|down_9|NC_015947.1_3086684_3087131_+	NA
GCF_000223885.1_ASM22388v1	NC_015947	Stenotrophomonas maltophilia JV3, complete genome	10	3525572-3525682	10	CRISPRCasFinder	no		cas3,DEDDh,csa3,WYL,Cas9_archaeal,DinG	Orphan	TTGGGTGGGTGCGGACCGTTGGTCCGCAC	29	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,csa3,WYL,Cas9_archaeal,DinG	NA|286aa|up_2|NC_015947.1_3521524_3522382_-,NA	NA|430aa|up_9|NC_015947.1_3510567_3511857_+	PRK10604, PRK10604, sensor protein RstB; Provisional	NA|267aa|up_8|NC_015947.1_3511997_3512798_+	COG3713, OmpV, Outer membrane protein V [Cell envelope biogenesis, outer membrane]	NA|862aa|up_7|NC_015947.1_3512870_3515456_-	TIGR03346, chaperone_ClpB, ATP-dependent chaperone ClpB	NA|274aa|up_6|NC_015947.1_3515637_3516459_-	pfam11219, DUF3014, Protein of unknown function (DUF3014)	NA|237aa|up_5|NC_015947.1_3516629_3517340_+	pfam14497, GST_C_3, Glutathione S-transferase, C-terminal domain	NA|535aa|up_4|NC_015947.1_3517419_3519024_-	COG2252, COG2252, Xanthine/uracil/vitamin C permease [Nucleotide transport and    metabolism]	NA|573aa|up_3|NC_015947.1_3519673_3521392_-	PRK09124, PRK09124, ubiquinone-dependent pyruvate dehydrogenase	NA|286aa|up_2|NC_015947.1_3521524_3522382_-	NA	NA|161aa|up_1|NC_015947.1_3522418_3522901_-	pfam12098, DUF3574, Protein of unknown function (DUF3574)	NA|812aa|up_0|NC_015947.1_3523115_3525551_+	cd01347, ligand_gated_channel, TonB dependent/Ligand-Gated channels are created by a monomeric 22 strand (22,24) anti-parallel beta-barrel	NA|253aa|down_0|NC_015947.1_3525799_3526558_+	cd01627, HAD_TPP, trehalose-phosphate phosphatase similar to Escherichia coli trehalose-6-phosphate phosphatase OtsB and Saccharomyces cerevisiae trehalose-phosphatase TPS2	NA|594aa|down_1|NC_015947.1_3526597_3528379_+	COG3387, SGA1, Glucoamylase and related glycosyl hydrolases [Carbohydrate transport and metabolism]	NA|455aa|down_2|NC_015947.1_3528375_3529740_+	TIGR02400, Alphaalpha-trehalose-phosphate_synthase, alpha,alpha-trehalose-phosphate synthase [UDP-forming]	NA|146aa|down_3|NC_015947.1_3529810_3530248_-	COG3011, COG3011, Predicted thiol-disulfide oxidoreductase [General function    prediction only]	NA|169aa|down_4|NC_015947.1_3530222_3530729_-	pfam13761, DUF4166, Domain of unknown function (DUF4166)	NA|257aa|down_5|NC_015947.1_3530749_3531520_-	PRK10723, PRK10723, polyphenol oxidase	NA|330aa|down_6|NC_015947.1_3531519_3532509_-	PRK11180, rluD, 23S rRNA pseudouridine(1911/1915/1917) synthase RluD	NA|296aa|down_7|NC_015947.1_3532622_3533510_+	TIGR03302, OM_YfiO, outer membrane assembly lipoprotein YfiO	NA|401aa|down_8|NC_015947.1_3533716_3534919_+	pfam03583, LIP, Secretory lipase	NA|545aa|down_9|NC_015947.1_3535130_3536765_-	PRK13981, PRK13981, NAD synthetase; Provisional
GCF_000223885.1_ASM22388v1	NC_015947	Stenotrophomonas maltophilia JV3, complete genome	11	3554621-3554738	11	CRISPRCasFinder	no		cas3,DEDDh,csa3,WYL,Cas9_archaeal,DinG	Orphan	AAGCAAATCCACGCATGGCGTGGATCTACT	30	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,csa3,WYL,Cas9_archaeal,DinG	NA|195aa|up_0|NC_015947.1_3548873_3549458_-,NA|154aa|down_2|NC_015947.1_3557784_3558246_-,NA|157aa|down_3|NC_015947.1_3558361_3558832_-,NA|160aa|down_4|NC_015947.1_3558927_3559407_-,NA|73aa|down_6|NC_015947.1_3560672_3560891_-	NA|390aa|up_9|NC_015947.1_3537896_3539066_-	PRK00696, sucC, ADP-forming succinate--CoA ligase subunit beta	NA|538aa|up_8|NC_015947.1_3539471_3541085_+	PRK11360, PRK11360, two-component system sensor histidine kinase AtoS	NA|458aa|up_7|NC_015947.1_3541145_3542519_+	COG2204, AtoC, Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]	NA|577aa|up_6|NC_015947.1_3542791_3544522_-	TIGR02538, Type_IV_pilus_assembly_protein_PilF, type IV-A pilus assembly ATPase PilB	NA|136aa|up_5|NC_015947.1_3544746_3545154_-	COG4969, PilA, Tfp pilus assembly protein, major pilin PilA [Cell motility and secretion / Intracellular trafficking and secretion]	NA|138aa|up_4|NC_015947.1_3545257_3545671_-	COG4969, PilA, Tfp pilus assembly protein, major pilin PilA [Cell motility and secretion / Intracellular trafficking and secretion]	NA|420aa|up_3|NC_015947.1_3546027_3547287_+	COG1459, PulF, Type II secretory pathway, component PulF [Cell motility and secretion / Intracellular trafficking and secretion]	NA|288aa|up_2|NC_015947.1_3547294_3548158_+	COG1989, PulO, Type II secretory pathway, prepilin signal peptidase PulO and related peptidases [Cell motility and secretion / Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]	NA|204aa|up_1|NC_015947.1_3548169_3548781_+	PRK00081, coaE, dephospho-CoA kinase; Reviewed	NA|195aa|up_0|NC_015947.1_3548873_3549458_-	NA	NA|457aa|down_0|NC_015947.1_3555612_3556983_-	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|226aa|down_1|NC_015947.1_3556945_3557623_-	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|154aa|down_2|NC_015947.1_3557784_3558246_-	NA	NA|157aa|down_3|NC_015947.1_3558361_3558832_-	NA	NA|160aa|down_4|NC_015947.1_3558927_3559407_-	NA	NA|293aa|down_5|NC_015947.1_3559665_3560544_-	PRK10446, PRK10446, 30S ribosomal protein S6--L-glutamate ligase	NA|73aa|down_6|NC_015947.1_3560672_3560891_-	NA	NA|127aa|down_7|NC_015947.1_3561325_3561706_-	pfam05656, DUF805, Protein of unknown function (DUF805)	NA|618aa|down_8|NC_015947.1_3562138_3563992_-	cd01847, Triacylglycerol_lipase_like, Triacylglycerol lipase-like subfamily of the SGNH hydrolases, a diverse family of lipases and esterases	NA|67aa|down_9|NC_015947.1_3564199_3564400_+	PRK05659, PRK05659, sulfur carrier protein ThiS; Validated
GCF_000223885.1_ASM22388v1	NC_015947	Stenotrophomonas maltophilia JV3, complete genome	12	4098614-4098715	12	CRISPRCasFinder	no		cas3,DEDDh,csa3,WYL,Cas9_archaeal,DinG	Orphan	GCCACCCGACCAACGGTCGGGCGCTACC	28	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,csa3,WYL,Cas9_archaeal,DinG	NA,NA|120aa|down_6|NC_015947.1_4107945_4108305_-,NA|322aa|down_9|NC_015947.1_4109311_4110277_-	NA|293aa|up_9|NC_015947.1_4090082_4090961_+	PRK00022, lolB, lipoprotein localization protein LolB	NA|428aa|up_8|NC_015947.1_4091019_4092303_+	PRK00885, PRK00885, phosphoribosylamine--glycine ligase; Provisional	NA|111aa|up_7|NC_015947.1_4092414_4092747_-	COG2944, COG2944, Predicted transcriptional regulator [Transcription]	NA|130aa|up_6|NC_015947.1_4092730_4093120_-	pfam06296, RelE, RelE toxin of RelE / RelB toxin-antitoxin system	NA|292aa|up_5|NC_015947.1_4093284_4094160_-	PRK06596, PRK06596, RNA polymerase factor sigma-32; Reviewed	NA|238aa|up_4|NC_015947.1_4094438_4095152_-	PRK05254, PRK05254, uracil-DNA glycosylase; Provisional	NA|281aa|up_3|NC_015947.1_4095148_4095991_-	cd00156, REC, phosphoacceptor receiver (REC) domain of response regulators (RRs) and pseudo response regulators (PRRs)	NA|316aa|up_2|NC_015947.1_4095998_4096946_-	COG2177, FtsX, Cell division protein [Cell division and chromosome partitioning]	NA|229aa|up_1|NC_015947.1_4096949_4097636_-	COG2884, FtsE, Predicted ATPase involved in cell division [Cell division and chromosome partitioning]	NA|248aa|up_0|NC_015947.1_4097735_4098479_-	pfam13649, Methyltransf_25, Methyltransferase domain	NA|574aa|down_0|NC_015947.1_4098734_4100456_-	PRK04537, PRK04537, ATP-dependent RNA helicase RhlB; Provisional	NA|110aa|down_1|NC_015947.1_4100965_4101295_+	TIGR01068, Thioredoxin-like_protein_slr0233, thioredoxin	NA|584aa|down_2|NC_015947.1_4101522_4103274_+	PRK09376, rho, transcription termination factor Rho; Provisional	NA|525aa|down_3|NC_015947.1_4103483_4105058_+	cd01949, GGDEF, Diguanylate-cyclase (DGC) or GGDEF domain	NA|297aa|down_4|NC_015947.1_4105097_4105988_-	pfam03544, TonB_C, Gram-negative bacterial TonB protein C-terminal	NA|577aa|down_5|NC_015947.1_4106068_4107799_-	PRK02946, aceK, bifunctional isocitrate dehydrogenase kinase/phosphatase protein; Validated	NA|120aa|down_6|NC_015947.1_4107945_4108305_-	NA	NA|139aa|down_7|NC_015947.1_4108358_4108775_-	smart00960, Robl_LC7, Roadblock/LC7 domain	NA|184aa|down_8|NC_015947.1_4108767_4109319_-	COG2229, COG2229, Predicted GTPase [General function prediction only]	NA|322aa|down_9|NC_015947.1_4109311_4110277_-	NA
GCF_000223885.1_ASM22388v1	NC_015947	Stenotrophomonas maltophilia JV3, complete genome	13	4157262-4157368	13	CRISPRCasFinder	no		cas3,DEDDh,csa3,WYL,Cas9_archaeal,DinG	Orphan	CCTGCAGCCAGGCATGGCCTGGCTCTACT	29	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,csa3,WYL,Cas9_archaeal,DinG	NA,NA|219aa|down_8|NC_015947.1_4165271_4165928_-	NA|265aa|up_9|NC_015947.1_4148322_4149117_-	PRK00278, trpC, indole-3-glycerol phosphate synthase TrpC	NA|344aa|up_8|NC_015947.1_4149191_4150223_-	PRK00188, trpD, anthranilate phosphoribosyltransferase; Provisional	NA|196aa|up_7|NC_015947.1_4150239_4150827_-	PRK05670, PRK05670, anthranilate synthase component II; Provisional	NA|260aa|up_6|NC_015947.1_4150829_4151609_-	pfam04402, SIMPL, Protein of unknown function (DUF541)	NA|492aa|up_5|NC_015947.1_4151676_4153152_-	PRK13565, PRK13565, anthranilate synthase component I; Provisional	NA|318aa|up_4|NC_015947.1_4153349_4154303_-	PRK13054, PRK13054, lipid kinase; Reviewed	NA|161aa|up_3|NC_015947.1_4154507_4154990_-	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|225aa|up_2|NC_015947.1_4155048_4155723_-	PRK08745, PRK08745, ribulose-phosphate 3-epimerase; Provisional	NA|110aa|up_1|NC_015947.1_4155780_4156110_-	PRK09430, djlA, co-chaperone DjlA	NA|311aa|up_0|NC_015947.1_4156248_4157181_+	PRK13961, PRK13961, phosphoribosylaminoimidazole-succinocarboxamide synthase; Provisional	NA|162aa|down_0|NC_015947.1_4157397_4157883_+	COG4539, COG4539, Predicted membrane protein [Function unknown]	NA|944aa|down_1|NC_015947.1_4158216_4161048_+	PRK12648, PRK12648, putative monovalent cation/H+ antiporter subunit A; Reviewed	NA|131aa|down_2|NC_015947.1_4161047_4161440_+	PRK09094, PRK09094, putative monovalent cation/H+ antiporter subunit C; Reviewed	NA|512aa|down_3|NC_015947.1_4161436_4162972_+	PRK12666, PRK12666, putative monovalent cation/H+ antiporter subunit D; Reviewed	NA|169aa|down_4|NC_015947.1_4162968_4163475_+	PRK08965, PRK08965, putative monovalent cation/H+ antiporter subunit E; Reviewed	NA|95aa|down_5|NC_015947.1_4163471_4163756_+	PRK06161, PRK06161, putative monovalent cation/H+ antiporter subunit F; Reviewed	NA|130aa|down_6|NC_015947.1_4163752_4164142_+	PRK12674, PRK12674, putative monovalent cation/H+ antiporter subunit G; Reviewed	NA|322aa|down_7|NC_015947.1_4164230_4165196_-	COG0530, ECM27, Ca2+/Na+ antiporter [Inorganic ion transport and metabolism]	NA|219aa|down_8|NC_015947.1_4165271_4165928_-	NA	NA|184aa|down_9|NC_015947.1_4166053_4166605_+	pfam12200, DUF3597, Domain of unknown function (DUF3597)
