assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000222975.1_ASM22297v1	NC_017168	Yersinia pestis A1122, complete sequence	1	400370-400449	1	CRISPRCasFinder	no		DEDDh,cas3,csa3,cas1,cas3f,cas8f,cas5f,cas7f,cas6f,DinG	Orphan	CAGCCGCAGCCACGCTCAGCCATTC	25	0	0	NA	NA	NA	1	1	Orphan	DEDDh,cas3,csa3,cas1,cas3f,cas8f,cas5f,cas7f,cas6f,DinG	NA,NA|152aa|down_4|NC_017168.1_407107_407563_-,NA|157aa|down_5|NC_017168.1_407589_408060_-,NA|77aa|down_9|NC_017168.1_411542_411773_-	NA|94aa|up_9|NC_017168.1_387645_387927_+	COG2960, COG2960, Uncharacterized protein conserved in bacteria [Function unknown]	NA|417aa|up_8|NC_017168.1_388251_389502_-	PRK11021, PRK11021, putative transporter; Provisional	NA|477aa|up_7|NC_017168.1_389538_390969_-	PRK11316, PRK11316, bifunctional D-glycero-beta-D-manno-heptose-7-phosphate kinase/D-glycero-beta-D-manno-heptose 1-phosphate adenylyltransferase HldE	NA|952aa|up_6|NC_017168.1_391103_393959_-	PRK11072, PRK11072, bifunctional [glutamate--ammonia ligase]-adenylyl-L-tyrosine phosphorylase/[glutamate--ammonia-ligase] adenylyltransferase	NA|436aa|up_5|NC_017168.1_394129_395437_-	COG3025, COG3025, Uncharacterized conserved protein [Function unknown]	NA|208aa|up_4|NC_017168.1_395740_396364_+	PRK10884, PRK10884, SH3 domain-containing protein; Provisional	NA|413aa|up_3|NC_017168.1_396523_397762_+	PRK10885, cca, multifunctional CCA addition/repair protein	NA|273aa|up_2|NC_017168.1_397997_398816_-	PRK00281, PRK00281, undecaprenyl-diphosphate phosphatase	NA|120aa|up_1|NC_017168.1_399089_399449_-	PRK11593, folB, bifunctional dihydroneopterin aldolase/7,8-dihydroneopterin epimerase	NA|217aa|up_0|NC_017168.1_399556_400207_+	PRK00220, PRK00220, glycerol-3-phosphate 1-O-acyltransferase PlsY	NA|338aa|down_0|NC_017168.1_400452_401466_-	PRK09604, PRK09604, tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	NA|72aa|down_1|NC_017168.1_401871_402087_+	PRK00270, rpsU, 30S ribosomal protein S21; Reviewed	NA|583aa|down_2|NC_017168.1_402222_403971_+	PRK05667, dnaG, DNA primase; Validated	NA|613aa|down_3|NC_017168.1_404128_405967_+	PRK05658, PRK05658, RNA polymerase sigma factor RpoD; Validated	NA|152aa|down_4|NC_017168.1_407107_407563_-	NA	NA|157aa|down_5|NC_017168.1_407589_408060_-	NA	NA|461aa|down_6|NC_017168.1_408068_409451_-	cd00085, HNHc, HNH nucleases; HNH endonuclease signature which is found in viral, prokaryotic, and eukaryotic proteins	NA|260aa|down_7|NC_017168.1_409576_410356_-	PRK09183, PRK09183, transposase/IS protein; Provisional	NA|341aa|down_8|NC_017168.1_410355_411378_-	COG4584, COG4584, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|77aa|down_9|NC_017168.1_411542_411773_-	NA
GCF_000222975.1_ASM22297v1	NC_017168	Yersinia pestis A1122, complete sequence	2	1342455-1342567	2	CRISPRCasFinder	no		DEDDh,cas3,csa3,cas1,cas3f,cas8f,cas5f,cas7f,cas6f,DinG	Orphan	CTTCACTCGGCTGCTCAAATGTGCTTT	27	0	0	NA	NA	NA	1	1	Orphan	DEDDh,cas3,csa3,cas1,cas3f,cas8f,cas5f,cas7f,cas6f,DinG	NA|90aa|up_2|NC_017168.1_1338306_1338576_+,NA	NA|728aa|up_9|NC_017168.1_1325284_1327468_+	PRK05402, PRK05402, 1,4-alpha-glucan branching protein GlgB	NA|663aa|up_8|NC_017168.1_1327469_1329458_+	PRK03705, PRK03705, glycogen debranching protein GlgX	NA|477aa|up_7|NC_017168.1_1330965_1332396_+	PRK00654, glgA, glycogen synthase GlgA	NA|816aa|up_6|NC_017168.1_1332564_1335012_+	PRK14986, PRK14986, glycogen phosphorylase; Provisional	NA|474aa|up_5|NC_017168.1_1335174_1336596_-	PRK12266, glpD, glycerol-3-phosphate dehydrogenase; Reviewed	NA|59aa|up_4|NC_017168.1_1337517_1337694_+	TIGR03034, TIGR03034, conserved hypothetical protein	NA|155aa|up_3|NC_017168.1_1337677_1338142_+	pfam06092, DUF943, Enterobacterial putative membrane protein (DUF943)	NA|90aa|up_2|NC_017168.1_1338306_1338576_+	NA	NA|341aa|up_1|NC_017168.1_1340170_1341193_+	COG4584, COG4584, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|260aa|up_0|NC_017168.1_1341192_1341972_+	PRK09183, PRK09183, transposase/IS protein; Provisional	NA|879aa|down_0|NC_017168.1_1342986_1345623_-	PRK00009, PRK00009, phosphoenolpyruvate carboxylase; Reviewed	NA|388aa|down_1|NC_017168.1_1345996_1347160_-	PRK05111, PRK05111, acetylornithine deacetylase; Provisional	NA|335aa|down_2|NC_017168.1_1347410_1348415_+	PRK00436, argC, N-acetyl-gamma-glutamyl-phosphate reductase; Validated	NA|258aa|down_3|NC_017168.1_1348583_1349357_+	cd04249, AAK_NAGK-NC, AAK_NAGK-NC: N-Acetyl-L-glutamate kinase - noncyclic (NAGK-NC) catalyzes the phosphorylation of the gamma-COOH group of N-acetyl-L-glutamate (NAG) by ATP in the second step of microbial arginine biosynthesis using the acetylated, noncyclic route of ornithine biosynthesis	NA|458aa|down_4|NC_017168.1_1349523_1350897_+	PRK04833, PRK04833, argininosuccinate lyase; Provisional	NA|831aa|down_5|NC_017168.1_1351495_1353988_+	TIGR01785, Heme/hemopexin_utilization_protein_C, TonB-dependent heme/hemoglobin receptor family protein	NA|206aa|down_6|NC_017168.1_1354209_1354827_+	pfam06438, HasA, Heme-binding protein A (HasA)	NA|603aa|down_7|NC_017168.1_1354992_1356801_+	COG4618, ArpD, ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]	NA|443aa|down_8|NC_017168.1_1356876_1358205_+	TIGR01843, Hemolysin_secretion_protein_D_plasmid, type I secretion membrane fusion protein, HlyD family	NA|268aa|down_9|NC_017168.1_1358269_1359073_+	COG0810, TonB, Periplasmic protein TonB, links inner and outer membranes [Cell envelope biogenesis, outer membrane]
GCF_000222975.1_ASM22297v1	NC_017168	Yersinia pestis A1122, complete sequence	3	2866823-2867153	3,1,1	CRISPRCasFinder,CRT,PILER-CR	no		DEDDh,cas3,csa3,cas1,cas3f,cas8f,cas5f,cas7f,cas6f,DinG	Orphan	TTTCTAAGCTGCCTGTGCGGCAGTGAAC,TTTCTAAGCTGCCTGTGCGGCAGTGAAC,TTTCTAAGCTGCCTGTGCGGCAGTGAAC	28,28,28	2	2	2866851-2866882|2867093-2867125	NC_017168.1_3381904-3381935|NC_017168.1_3379217-3379249	I-F:I-F:I-F	5,5,4	5	Orphan	DEDDh,cas3,csa3,cas1,cas3f,cas8f,cas5f,cas7f,cas6f,DinG	NA,NA	NA|272aa|up_9|NC_017168.1_2852145_2852961_-	COG3718, IolB, Uncharacterized enzyme involved in inositol metabolism [Carbohydrate transport and metabolism]	NA|307aa|up_8|NC_017168.1_2852970_2853891_-	TIGR04379, myo-inositol_catabolism_protein, myo-inosose-2 dehydratase	NA|657aa|up_7|NC_017168.1_2854043_2856014_-	pfam09863, DUF2090, Uncharacterized protein conserved in bacteria (DUF2090)	NA|378aa|up_6|NC_017168.1_2856045_2857179_-	COG0673, MviM, Predicted dehydrogenases and related proteins [General function prediction only]	NA|343aa|up_5|NC_017168.1_2857202_2858231_-	COG1172, AraH, Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components [Carbohydrate transport and metabolism]	NA|516aa|up_4|NC_017168.1_2858242_2859790_-	COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]	NA|310aa|up_3|NC_017168.1_2859838_2860768_-	cd19968, PBP1_ABC_IbpA-like, periplasmic sugar-binding protein IbpA of an ABC transporter and similar proteins	NA|642aa|up_2|NC_017168.1_2862172_2864098_-	COG3962, COG3962, Acetolactate synthase [Amino acid transport and metabolism]	NA|509aa|up_1|NC_017168.1_2864132_2865659_-	cd07085, ALDH_F6_MMSDH, Methylmalonate semialdehyde dehydrogenase and ALDH family members 6A1 and 6B2	NA|285aa|up_0|NC_017168.1_2865964_2866819_+	COG1737, RpiR, Transcriptional regulators [Transcription]	NA|183aa|down_0|NC_017168.1_2867513_2868062_+	COG3477, COG3477, Predicted periplasmic/secreted protein [Function unknown]	NA|1993aa|down_1|NC_017168.1_2868468_2874447_+	COG2373, COG2373, Large extracellular alpha-helical protein [General function prediction only]	NA|293aa|down_2|NC_017168.1_2874503_2875382_+	TIGR02073, Includes:_Penicillin-insensitive_transglycosylase, penicillin-binding protein 1C	NA|403aa|down_3|NC_017168.1_2875415_2876624_+	COG3328, COG3328, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|85aa|down_4|NC_017168.1_2876645_2876900_-	cd05563, PTS_IIB_ascorbate, PTS_IIB_ascorbate: subunit IIB of enzyme II (EII) of the L-ascorbate-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS)	NA|148aa|down_5|NC_017168.1_2877068_2877512_-	cd00211, PTS_IIA_fru, PTS_IIA, PTS system, fructose/mannitol specific IIA subunit	NA|345aa|down_6|NC_017168.1_2877878_2878913_+	COG1609, PurR, Transcriptional regulators [Transcription]	NA|713aa|down_7|NC_017168.1_2879178_2881317_-	PRK05632, PRK05632, phosphate acetyltransferase; Reviewed	NA|401aa|down_8|NC_017168.1_2881499_2882702_-	PRK00180, PRK00180, acetate kinase A/propionate kinase 2; Reviewed	NA|152aa|down_9|NC_017168.1_2883123_2883579_+	PRK01816, PRK01816, hypothetical protein; Provisional
GCF_000222975.1_ASM22297v1	NC_017168	Yersinia pestis A1122, complete sequence	4	2992631-2993139	2,4,2	PILER-CR,CRISPRCasFinder,CRT	no	cas1,cas3f,cas8f,cas5f,cas7f,cas6f	DEDDh,cas3,csa3,cas1,cas3f,cas8f,cas5f,cas7f,cas6f,DinG	Type I-F	TTTCTAAGCTGCCTGTGCGGCAGTGAAC,GTTCACTGCCGCACAGGCAGCTTAGAAA,GTTCACTGCCGCACAGGCAGCTTAGAAA	28,28,28	2	2	2992659-2992691|2992720-2992751	NC_017168.1_3381621-3381589|NC_017168.1_3387470-3387501	I-F:I-F:I-F	7,8,8	8	TypeI-F	DEDDh,cas3,csa3,cas1,cas3f,cas8f,cas5f,cas7f,cas6f,DinG	NA|372aa|up_2|NC_017168.1_2988037_2989153_+,NA|425aa|up_1|NC_017168.1_2989191_2990466_+,NA|70aa|down_9|NC_017168.1_3005190_3005400_+	NA|463aa|up_9|NC_017168.1_2979935_2981324_-	PRK15414, PRK15414, phosphomannomutase	NA|347aa|up_8|NC_017168.1_2981340_2982381_-	cd06279, PBP1_LacI-like, ligand-binding domain of an uncharacterized transcription regulator from Corynebacterium glutamicum and its close homologs from other bacteria	NA|429aa|up_7|NC_017168.1_2982652_2983939_+	COG1653, UgpB, ABC-type sugar transport system, periplasmic component [Carbohydrate transport and metabolism]	NA|292aa|up_6|NC_017168.1_2984047_2984923_+	COG1175, UgpA, ABC-type sugar transport systems, permease components [Carbohydrate transport and metabolism]	NA|275aa|up_5|NC_017168.1_2984923_2985748_+	COG0395, UgpE, ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism]	NA|352aa|up_4|NC_017168.1_2985894_2986950_+	cd18612, GH130_Lin0857-like, Glycoside hydrolase family 130 such as Listeria innocua beta-1,2-mannobiose phosphorylase	NA|313aa|up_3|NC_017168.1_2986976_2987915_+	pfam08950, DUF1861, Protein of unknown function (DUF1861)	NA|372aa|up_2|NC_017168.1_2988037_2989153_+	NA	NA|425aa|up_1|NC_017168.1_2989191_2990466_+	NA	NA|415aa|up_0|NC_017168.1_2991048_2992293_-	COG0668, MscS, Small-conductance mechanosensitive channel [Cell envelope biogenesis, outer membrane]	cas1|327aa|down_0|NC_017168.1_2993498_2994479_+	TIGR03637, cas1_YPEST, CRISPR-associated endonuclease Cas1, subtype I-F/YPEST	cas3f|1096aa|down_1|NC_017168.1_2994475_2997763_+	cd09673, Cas3_Cas2_I-F, CRISPR/Cas system-associated protein Cas3/Cas2	cas8f|449aa|down_2|NC_017168.1_2998170_2999517_+	TIGR02564, conserved_hypothetical_protein, CRISPR type I-F/YPEST-associated protein Csy1	cas5f|317aa|down_3|NC_017168.1_2999513_3000464_+	cd09676, Csy2_I-F, CRISPR/Cas system-associated RAMP superfamily protein Csy2	cas7f|335aa|down_4|NC_017168.1_3000481_3001486_+	pfam09615, Cas_Csy3, CRISPR-associated protein (Cas_Csy3)	cas6f|185aa|down_5|NC_017168.1_3001496_3002051_+	pfam09618, Cas_Csy4, CRISPR-associated protein (Cas_Csy4)	NA|340aa|down_6|NC_017168.1_3002128_3003148_-	cd19079, AKR_EcYajO-like, Escherichia coli YajO and similar proteins	NA|168aa|down_7|NC_017168.1_3003158_3003662_-	COG1795, COG1795, Formaldehyde-activating enzyme nesessary for methanogenesis [Energy    production and conversion]	NA|453aa|down_8|NC_017168.1_3003708_3005067_-	cd17316, MFS_SV2_like, Metazoan Synaptic vesicle glycoprotein 2 (SV2) and related small molecule transporters of the Major Facilitator Superfamily	NA|70aa|down_9|NC_017168.1_3005190_3005400_+	NA
GCF_000222975.1_ASM22297v1	NC_017168	Yersinia pestis A1122, complete sequence	5	3885209-3885418	5,3,3	CRISPRCasFinder,CRT,PILER-CR	no	DEDDh	DEDDh,cas3,csa3,cas1,cas3f,cas8f,cas5f,cas7f,cas6f,DinG	Unclear	TTTCTAAGCTGCCTGTGCGGCAGTGAAC,TTTCTAAGCTGCCTGTGCGGCAGTGAAC,ATTTTCTAAGCTGCCTGTGCGGCAGTGAACCT	28,28,32	0	0	NA	NA	I-F:I-F:I-F	3,3,2	3	Orphan	DEDDh,cas3,csa3,cas1,cas3f,cas8f,cas5f,cas7f,cas6f,DinG	NA,NA|16aa|down_7|NC_017168.1_3893707_3893755_+	NA|426aa|up_9|NC_017168.1_3870769_3872047_-	cd03324, rTSbeta_L-fuconate_dehydratase, Human rTS beta is encoded by the rTS gene which, through alternative RNA splicing, also encodes rTS alpha whose mRNA is complementary to thymidylate synthase mRNA	NA|281aa|up_8|NC_017168.1_3872078_3872921_-	COG0179, MhpD, 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) [Secondary metabolites biosynthesis, transport, and catabolism]	NA|247aa|up_7|NC_017168.1_3872968_3873709_-	cd05368, DHRS6_like_SDR_c, human DHRS6-like, classical (c) SDRs	NA|141aa|up_6|NC_017168.1_3874136_3874559_+	COG3011, COG3011, Predicted thiol-disulfide oxidoreductase [General function    prediction only]	NA|435aa|up_5|NC_017168.1_3874567_3875872_-	cd17319, MFS_ExuT_GudP_like, Hexuronate transporter, Glucarate transporter, and similar transporters of the Major Facilitator Superfamily	NA|1051aa|up_4|NC_017168.1_3876896_3880049_+	pfam11924, IAT_beta, Inverse autotransporter, beta-domain	NA|403aa|up_3|NC_017168.1_3880011_3881220_-	COG3328, COG3328, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|106aa|up_2|NC_017168.1_3881590_3881908_-	PRK05423, PRK05423, DUF496 family protein	NA|370aa|up_1|NC_017168.1_3882341_3883451_-	cd05236, FAR-N_SDR_e, fatty acyl CoA reductases (FARs), extended (e) SDRs	DEDDh|477aa|up_0|NC_017168.1_3883743_3885174_+	PRK11779, sbcB, exonuclease I; Provisional	NA|464aa|down_0|NC_017168.1_3885910_3887302_-	COG0531, PotE, Amino acid transporters [Amino acid transport and metabolism]	NA|364aa|down_1|NC_017168.1_3887761_3888853_-	PRK10586, PRK10586, putative oxidoreductase; Provisional	NA|298aa|down_2|NC_017168.1_3889138_3890032_+	COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]	NA|230aa|down_3|NC_017168.1_3889989_3890679_+	COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]	NA|332aa|down_4|NC_017168.1_3890675_3891671_+	COG1172, AraH, Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components [Carbohydrate transport and metabolism]	NA|97aa|down_5|NC_017168.1_3892059_3892350_+	pfam16695, Tai4, Type VI secretion system (T6SS), amidase immunity protein	NA|276aa|down_6|NC_017168.1_3892504_3893332_-	cd05266, SDR_a4, atypical (a) SDRs, subgroup 4	NA|16aa|down_7|NC_017168.1_3893707_3893755_+	NA	NA|300aa|down_8|NC_017168.1_3894037_3894937_+	PRK00489, hisG, ATP phosphoribosyltransferase; Reviewed	NA|444aa|down_9|NC_017168.1_3894940_3896272_+	PRK00877, hisD, bifunctional histidinal dehydrogenase/ histidinol dehydrogenase; Reviewed
