assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000220885.1_ASM22088v1	NC_017215	Bifidobacterium animalis subsp. lactis CNCM I-2494, complete sequence	1	183473-183858	1	CRISPRCasFinder	no		casR,WYL,cas3,DEDDh,csb3,csb2gr5,cas7,cas2,cas1	Orphan	GGTCGGTTTTGCGGATGCTTCCG	23	0	0	NA	NA	NA	7	7	Orphan	casR,WYL,cas3,DEDDh,csb3,csb2gr5,cas7,cas2,cas1	NA|246aa|up_8|NC_017215.1_173869_174607_+,NA|244aa|up_5|NC_017215.1_176894_177626_-,NA|54aa|up_4|NC_017215.1_177924_178086_+,NA|153aa|down_4|NC_017215.1_189550_190009_-	NA|461aa|up_9|NC_017215.1_172057_173440_+	TIGR03356, BGL, beta-galactosidase	NA|246aa|up_8|NC_017215.1_173869_174607_+	NA	NA|343aa|up_7|NC_017215.1_174863_175892_+	COG1609, PurR, Transcriptional regulators [Transcription]	NA|212aa|up_6|NC_017215.1_176175_176811_-	pfam04854, DUF624, Protein of unknown function, DUF624	NA|244aa|up_5|NC_017215.1_176894_177626_-	NA	NA|54aa|up_4|NC_017215.1_177924_178086_+	NA	NA|422aa|up_3|NC_017215.1_178399_179665_+	pfam07221, GlcNAc_2-epim, N-acylglucosamine 2-epimerase (GlcNAc 2-epimerase)	NA|247aa|up_2|NC_017215.1_180192_180933_+	PRK10247, PRK10247, putative ABC transporter ATP-binding protein YbbL; Provisional	NA|289aa|up_1|NC_017215.1_180934_181801_+	pfam03649, UPF0014, Uncharacterized protein family (UPF0014)	NA|499aa|up_0|NC_017215.1_181953_183450_+	COG1113, AnsP, Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism]	NA|234aa|down_0|NC_017215.1_184031_184733_+	cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein	NA|985aa|down_1|NC_017215.1_184743_187698_+	COG0577, SalY, ABC-type antimicrobial peptide transport system, permease component [Defense mechanisms]	NA|515aa|down_2|NC_017215.1_187752_189297_+	COG1113, AnsP, Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism]	NA|82aa|down_3|NC_017215.1_189308_189554_-	COG4591, LolE, ABC-type transport system, involved in lipoprotein release, permease component [Cell envelope biogenesis, outer membrane]	NA|153aa|down_4|NC_017215.1_189550_190009_-	NA	NA|574aa|down_5|NC_017215.1_189905_191627_-	COG0577, SalY, ABC-type antimicrobial peptide transport system, permease component [Defense mechanisms]	NA|141aa|down_6|NC_017215.1_191623_192046_-	COG1136, SalX, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]	NA|198aa|down_7|NC_017215.1_192740_193334_+	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|640aa|down_8|NC_017215.1_193405_195325_+	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]	NA|612aa|down_9|NC_017215.1_195396_197232_+	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
GCF_000220885.1_ASM22088v1	NC_017215	Bifidobacterium animalis subsp. lactis CNCM I-2494, complete sequence	2	219250-219333	2	CRISPRCasFinder	no		casR,WYL,cas3,DEDDh,csb3,csb2gr5,cas7,cas2,cas1	Orphan	TTTCCGTCTCTTTTTACGCAGAA	23	0	0	NA	NA	NA	1	1	Orphan	casR,WYL,cas3,DEDDh,csb3,csb2gr5,cas7,cas2,cas1	NA|256aa|up_2|NC_017215.1_215581_216349_+,NA|237aa|up_1|NC_017215.1_216528_217239_-,NA	NA|733aa|up_9|NC_017215.1_204560_206759_-	COG1511, COG1511, Predicted membrane protein [Function unknown]	NA|923aa|up_8|NC_017215.1_206755_209524_-	COG1511, COG1511, Predicted membrane protein [Function unknown]	NA|214aa|up_7|NC_017215.1_209817_210459_+	pfam09605, Trep_Strep, Hypothetical bacterial integral membrane protein (Trep_Strep)	NA|247aa|up_6|NC_017215.1_210455_211196_+	COG0619, CbiQ, ABC-type cobalt transport system, permease component CbiQ and related transporters [Inorganic ion transport and metabolism]	NA|496aa|up_5|NC_017215.1_211248_212736_+	cd03226, ABC_cobalt_CbiO_domain2, Second domain of the ATP-binding cassette component of cobalt transport system	NA|528aa|up_4|NC_017215.1_212785_214369_-	pfam09223, ZinT, ZinT (YodA) periplasmic lipocalin-like zinc-recruitment	NA|294aa|up_3|NC_017215.1_214564_215446_-	cd07208, Pat_hypo_Ecoli_yjju_like, Hypothetical patatin similar to yjju protein of Escherichia coli	NA|256aa|up_2|NC_017215.1_215581_216349_+	NA	NA|237aa|up_1|NC_017215.1_216528_217239_-	NA	NA|523aa|up_0|NC_017215.1_217569_219138_+	pfam03577, Peptidase_C69, Peptidase family C69	NA|467aa|down_0|NC_017215.1_220163_221564_+	PRK10416, PRK10416, signal recognition particle-docking protein FtsY; Provisional	NA|432aa|down_1|NC_017215.1_221823_223119_+	COG0004, AmtB, Ammonia permease [Inorganic ion transport and metabolism]	NA|113aa|down_2|NC_017215.1_223120_223459_+	pfam00543, P-II, Nitrogen regulatory protein P-II	NA|609aa|down_3|NC_017215.1_223769_225596_+	PRK03381, PRK03381, PII uridylyl-transferase; Provisional	NA|91aa|down_4|NC_017215.1_225956_226229_+	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|460aa|down_5|NC_017215.1_226287_227667_+	TIGR00665, DnaB, replicative DNA helicase	NA|503aa|down_6|NC_017215.1_227763_229272_+	pfam08353, DUF1727, Domain of unknown function (DUF1727)	NA|250aa|down_7|NC_017215.1_229340_230090_+	COG3442, COG3442, Predicted glutamine amidotransferase [General function prediction only]	NA|116aa|down_8|NC_017215.1_230197_230545_+	COG3937, COG3937, Uncharacterized conserved protein [Function unknown]	NA|717aa|down_9|NC_017215.1_230653_232804_+	COG0661, AarF, Predicted unusual protein kinase [General function prediction only]
GCF_000220885.1_ASM22088v1	NC_017215	Bifidobacterium animalis subsp. lactis CNCM I-2494, complete sequence	3	1324345-1324530	1	PILER-CR	no		casR,WYL,cas3,DEDDh,csb3,csb2gr5,cas7,cas2,cas1	Orphan	TTGCGTAAAAAGAGACAGA	19	0	0	NA	NA	NA	2	2	Orphan	casR,WYL,cas3,DEDDh,csb3,csb2gr5,cas7,cas2,cas1	NA|84aa|up_8|NC_017215.1_1312735_1312987_+,NA|225aa|up_0|NC_017215.1_1323667_1324342_+,NA|84aa|down_7|NC_017215.1_1335741_1335993_+	NA|214aa|up_9|NC_017215.1_1311921_1312563_-	cd03357, LbH_MAT_GAT, Maltose O-acetyltransferase (MAT) and Galactoside O-acetyltransferase (GAT): MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates	NA|84aa|up_8|NC_017215.1_1312735_1312987_+	NA	NA|900aa|up_7|NC_017215.1_1313070_1315770_-	PRK09277, PRK09277, aconitate hydratase AcnA	NA|857aa|up_6|NC_017215.1_1315837_1318408_-	cd02609, P-type_ATPase, uncharacterized subfamily of P-type ATPase transporter, similar to uncharacterized Streptococcus pneumoniae exported protein 7, Exp7	NA|196aa|up_5|NC_017215.1_1318456_1319044_-	cd06309, PBP1_galactofuranose_YtfQ-like, periplasmic binding domain of ABC-type galactofuranose YtfQ-like transport systems	NA|437aa|up_4|NC_017215.1_1319379_1320690_-	COG2265, TrmA, SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]	NA|257aa|up_3|NC_017215.1_1320803_1321574_-	pfam11361, DUF3159, Protein of unknown function (DUF3159)	NA|286aa|up_2|NC_017215.1_1321642_1322500_-	pfam12502, DUF3710, Protein of unknown function (DUF3710)	NA|287aa|up_1|NC_017215.1_1322633_1323494_-	cd10281, Nape_like_AP-endo, Neisseria meningitides Nape-like subfamily of the ExoIII family purinic/apyrimidinic (AP) endonucleases	NA|225aa|up_0|NC_017215.1_1323667_1324342_+	NA	NA|663aa|down_0|NC_017215.1_1324601_1326590_-	COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]	NA|319aa|down_1|NC_017215.1_1326661_1327618_-	COG1173, DppC, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|309aa|down_2|NC_017215.1_1327631_1328558_-	COG0601, DppB, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|547aa|down_3|NC_017215.1_1328857_1330498_-	cd00995, PBP2_NikA_DppA_OppA_like, The substrate-binding domain of an ABC-type nickel/oligopeptide-like import system contains the type 2 periplasmic binding fold	NA|312aa|down_4|NC_017215.1_1330774_1331710_-	PRK00236, xerC, site-specific tyrosine recombinase XerC; Reviewed	NA|269aa|down_5|NC_017215.1_1331948_1332755_+	COG1136, SalX, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]	NA|945aa|down_6|NC_017215.1_1332762_1335597_+	COG4591, LolE, ABC-type transport system, involved in lipoprotein release, permease component [Cell envelope biogenesis, outer membrane]	NA|84aa|down_7|NC_017215.1_1335741_1335993_+	NA	NA|365aa|down_8|NC_017215.1_1336008_1337103_-	PRK06545, PRK06545, prephenate dehydrogenase; Validated	NA|372aa|down_9|NC_017215.1_1337111_1338227_-	cd13632, PBP2_Aa-PDT_like, Catalytic domain of prephenate dehydratase from Arthrobacter aurescens and similar proteins, subgroup 3; the type 2 periplasmic binding protein fold
GCF_000220885.1_ASM22088v1	NC_017215	Bifidobacterium animalis subsp. lactis CNCM I-2494, complete sequence	4	1516463-1517867	3,1,2	CRISPRCasFinder,CRT,PILER-CR	no	csb3,cas3,csb2gr5,cas7,cas2,cas1	casR,WYL,cas3,DEDDh,csb3,csb2gr5,cas7,cas2,cas1	Unclear	CCCTCAATGAAGCTCCGAAGCCGAGACTTCGGAGAT,CCCTCAATGAAGCTCCGAAGCCGAGACTTCGGAGAT,CCCTCAATGAAGCTCCGAAGCCGAGACTTCGGAGAT	36,36,36	0	0	NA	NA	NA:NA:NA	19,19,19	19	Unclear	casR,WYL,cas3,DEDDh,csb3,csb2gr5,cas7,cas2,cas1	NA,NA|230aa|down_4|NC_017215.1_1525589_1526279_+	NA|189aa|up_9|NC_017215.1_1504032_1504599_-	COG0431, COG0431, Predicted flavoprotein [General function prediction only]	NA|171aa|up_8|NC_017215.1_1504712_1505225_+	COG3727, Vsr, DNA G:T-mismatch repair endonuclease [DNA replication, recombination, and repair]	NA|72aa|up_7|NC_017215.1_1506228_1506444_+	pfam18495, VbhA, Antitoxin VbhA	NA|103aa|up_6|NC_017215.1_1506770_1507079_-	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	csb3|349aa|up_5|NC_017215.1_1507137_1508184_-	cd09764, Csb3_I-U, CRISPR/Cas system-associated RAMP superfamily protein Csb3	cas3|1018aa|up_4|NC_017215.1_1508187_1511241_-	TIGR02621, CRISPR-associated_helicase_Cas3, CRISPR-associated helicase Cas3, subtype Dpsyc	csb2gr5|546aa|up_3|NC_017215.1_1511231_1512869_-	TIGR02165, CRISPR-associated_protein_GSU0054_family, CRISPR-associated protein GSU0054/csb2, Dpsyc system	cas7|399aa|up_2|NC_017215.1_1512887_1514084_-	pfam09617, Cas_GSU0053, CRISPR-associated protein GSU0053 (Cas_GSU0053)	cas2|98aa|up_1|NC_017215.1_1514497_1514791_-	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	cas1|544aa|up_0|NC_017215.1_1514802_1516434_-	pfam01867, Cas_Cas1, CRISPR associated protein Cas1	NA|424aa|down_0|NC_017215.1_1518046_1519318_-	TIGR01436, Glutamate--cysteine_ligase_chloroplastic, glutamate--cysteine ligase, plant type	NA|1559aa|down_1|NC_017215.1_1519391_1524068_-	COG3580, COG3580, Uncharacterized protein conserved in bacteria [Function unknown]	NA|206aa|down_2|NC_017215.1_1524311_1524929_+	pfam06736, DUF1211, Protein of unknown function (DUF1211)	NA|134aa|down_3|NC_017215.1_1524925_1525327_+	pfam06993, DUF1304, Protein of unknown function (DUF1304)	NA|230aa|down_4|NC_017215.1_1525589_1526279_+	NA	NA|244aa|down_5|NC_017215.1_1526275_1527007_-	pfam13353, Fer4_12, 4Fe-4S single cluster domain	NA|809aa|down_6|NC_017215.1_1527366_1529793_-	PRK09263, PRK09263, anaerobic ribonucleoside triphosphate reductase; Provisional	NA|433aa|down_7|NC_017215.1_1530149_1531448_+	TIGR00237, exodeoxyribonuclease_VII_large_subunit, exodeoxyribonuclease VII, large subunit	NA|106aa|down_8|NC_017215.1_1531491_1531809_+	PRK00977, PRK00977, exodeoxyribonuclease VII small subunit; Provisional	NA|342aa|down_9|NC_017215.1_1531809_1532835_-	pfam03372, Exo_endo_phos, Endonuclease/Exonuclease/phosphatase family
GCF_000220885.1_ASM22088v1	NC_017215	Bifidobacterium animalis subsp. lactis CNCM I-2494, complete sequence	5	1916325-1916415	4	CRISPRCasFinder	no		casR,WYL,cas3,DEDDh,csb3,csb2gr5,cas7,cas2,cas1	Orphan	TTGGCGTCCATGTCACGCGCGGAATCGAT	29	0	0	NA	NA	NA	1	1	Orphan	casR,WYL,cas3,DEDDh,csb3,csb2gr5,cas7,cas2,cas1	NA,NA|750aa|down_9|NC_017215.1_1928704_1930954_+	NA|741aa|up_9|NC_017215.1_1900253_1902476_-	pfam02065, Melibiase, Melibiase	NA|170aa|up_8|NC_017215.1_1902591_1903101_-	COG0590, CumB, Cytosine/adenosine deaminases [Nucleotide transport and metabolism / Translation, ribosomal structure and biogenesis]	NA|691aa|up_7|NC_017215.1_1903250_1905323_+	COG0025, NhaP, NhaP-type Na+/H+ and K+/H+ antiporters [Inorganic ion transport and metabolism]	NA|313aa|up_6|NC_017215.1_1905393_1906332_-	COG0400, COG0400, Predicted esterase [General function prediction only]	NA|520aa|up_5|NC_017215.1_1906374_1907934_-	NF012221, MARTX_Nterm, MARTX multifunctional-autoprocessing repeats-in-toxin holotoxin RtxA	NA|194aa|up_4|NC_017215.1_1907983_1908565_-	PRK00416, dcd, deoxycytidine triphosphate deaminase; Reviewed	NA|997aa|up_3|NC_017215.1_1908774_1911765_-	COG0474, MgtA, Cation transport ATPase [Inorganic ion transport and metabolism]	NA|332aa|up_2|NC_017215.1_1912079_1913075_+	COG0566, SpoU, rRNA methylases [Translation, ribosomal structure and biogenesis]	NA|483aa|up_1|NC_017215.1_1913223_1914672_-	pfam13224, DUF4032, Domain of unknown function (DUF4032)	NA|378aa|up_0|NC_017215.1_1914879_1916013_-	PRK11650, ugpC, sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC	NA|341aa|down_0|NC_017215.1_1916436_1917459_+	pfam07885, Ion_trans_2, Ion channel	NA|706aa|down_1|NC_017215.1_1917528_1919646_+	cd14014, STKc_PknB_like, Catalytic domain of bacterial Serine/Threonine kinases, PknB and similar proteins	NA|346aa|down_2|NC_017215.1_1920025_1921063_+	PRK02201, PRK02201, putative inner membrane protein translocase component YidC; Provisional	NA|516aa|down_3|NC_017215.1_1921730_1923278_+	COG3583, COG3583, Uncharacterized protein conserved in bacteria [Function unknown]	NA|298aa|down_4|NC_017215.1_1923419_1924313_+	PRK00274, ksgA, 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase RsmA	NA|319aa|down_5|NC_017215.1_1924309_1925266_+	COG1947, IspE, 4-diphosphocytidyl-2C-methyl-D-erythritol 2-phosphate synthase [Lipid metabolism]	NA|209aa|down_6|NC_017215.1_1925337_1925964_+	pfam13399, LytR_C, LytR cell envelope-related transcriptional attenuator	NA|473aa|down_7|NC_017215.1_1926093_1927512_-	TIGR02692, putative_tRNA_nucleotidyltransferase, tRNA adenylyltransferase	NA|335aa|down_8|NC_017215.1_1927697_1928702_+	cd03673, Ap6A_hydrolase, Diadenosine hexaphosphate (Ap6A) hydrolase is a member of the Nudix hydrolase superfamily	NA|750aa|down_9|NC_017215.1_1928704_1930954_+	NA
