assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000220135.1_ASM22013v1	NC_020517	Bifidobacterium breve UCC2003, complete sequence	1	149237-149573	1	CRISPRCasFinder	no		c2c9_V-U4,DEDDh,cas3,WYL,cas2,cas1,cas4,cas7,cas8c,cas5	Orphan	TACTGGTGGTTTTGCCCCGCTGAGG	25	0	0	NA	NA	NA	6	6	Orphan	c2c9_V-U4,DEDDh,cas3,WYL,cas2,cas1,cas4,cas7,cas8c,cas5	NA,NA	NA|312aa|up_9|NC_020517.1_135960_136896_+	TIGR00950, Uncharacterized_inner_membrane_transporter_YicL, Carboxylate/Amino Acid/Amine Transporter	NA|356aa|up_8|NC_020517.1_136958_138026_+	PRK09197, PRK09197, fructose-bisphosphate aldolase; Provisional	NA|429aa|up_7|NC_020517.1_138193_139480_+	PRK01117, PRK01117, adenylosuccinate synthetase; Provisional	NA|528aa|up_6|NC_020517.1_139503_141087_+	cd01031, EriC, ClC chloride channel EriC	NA|355aa|up_5|NC_020517.1_141274_142339_+	COG0239, CrcB, Integral membrane protein possibly involved in chromosome condensation [Cell division and chromosome partitioning]	NA|132aa|up_4|NC_020517.1_142338_142734_+	pfam02537, CRCB, CrcB-like protein, Camphor Resistance (CrcB)	NA|362aa|up_3|NC_020517.1_143008_144094_+	cd06291, PBP1_Qymf-like, ligand binding domain of the lacI-like transcription regulator from a novel metal-reducing bacterium Alkaliphilus Metalliredigens (strain Qymf) and its close homologs	NA|509aa|up_2|NC_020517.1_144520_146047_+	PRK13840, PRK13840, sucrose phosphorylase; Provisional	NA|545aa|up_1|NC_020517.1_146251_147886_+	cd06174, MFS, Major Facilitator Superfamily	NA|351aa|up_0|NC_020517.1_147955_149008_+	cd06291, PBP1_Qymf-like, ligand binding domain of the lacI-like transcription regulator from a novel metal-reducing bacterium Alkaliphilus Metalliredigens (strain Qymf) and its close homologs	NA|456aa|down_0|NC_020517.1_149995_151363_+	cd17369, MFS_ShiA_like, Shikimate transporter and similar proteins of the Major Facilitator Superfamily	NA|351aa|down_1|NC_020517.1_151757_152810_+	PRK05479, PRK05479, ketol-acid reductoisomerase; Provisional	NA|335aa|down_2|NC_020517.1_153079_154084_+	COG1609, PurR, Transcriptional regulators [Transcription]	NA|436aa|down_3|NC_020517.1_154264_155572_+	cd14748, PBP2_UgpB, The periplasmic-binding component of ABC transport system specific for sn-glycerol-3-phosphate; possesses type 2 periplasmic binding fold	NA|374aa|down_4|NC_020517.1_155650_156772_+	COG1175, UgpA, ABC-type sugar transport systems, permease components [Carbohydrate transport and metabolism]	NA|316aa|down_5|NC_020517.1_156779_157727_+	COG0395, UgpE, ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism]	NA|467aa|down_6|NC_020517.1_157833_159234_+	TIGR03356, BGL, beta-galactosidase	NA|351aa|down_7|NC_020517.1_159498_160551_+	PRK05479, PRK05479, ketol-acid reductoisomerase; Provisional	NA|606aa|down_8|NC_020517.1_160735_162553_-	cd11332, AmyAc_OligoGlu_TS, Alpha amylase catalytic domain found in oligo-1,6-glucosidase (also called isomaltase; sucrase-isomaltase; alpha-limit dextrinase), trehalose synthase (also called maltose alpha-D-glucosyltransferase), and related proteins	NA|344aa|down_9|NC_020517.1_162824_163856_-	COG1609, PurR, Transcriptional regulators [Transcription]
GCF_000220135.1_ASM22013v1	NC_020517	Bifidobacterium breve UCC2003, complete sequence	2	1739051-1739358	2,1,1	CRISPRCasFinder,CRT,PILER-CR	no	cas2,cas1,cas4,cas7,cas8c,cas5,cas3	c2c9_V-U4,DEDDh,cas3,WYL,cas2,cas1,cas4,cas7,cas8c,cas5	 Type I-U?,Type I-U,Type I-C	ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC,ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC,ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC	33,33,33	0	0	NA	NA	I-C:I-C:I-C	4,4,3	4	TypeI-U?,TypeI-U,TypeI-C	c2c9_V-U4,DEDDh,cas3,WYL,cas2,cas1,cas4,cas7,cas8c,cas5	NA,NA|78aa|down_3|NC_020517.1_1748103_1748337_-	NA|238aa|up_9|NC_020517.1_1725571_1726285_+	cd02603, HAD_sEH-N_like, N-terminal lipase phosphatase domain of human soluble epoxide hydrolase, Escherichia coli YihX/HAD4 alpha-D-glucose 1-phosphate phosphatase, and related domains, may be inactive	NA|525aa|up_8|NC_020517.1_1726344_1727919_-	TIGR03689, pup_AAA, proteasome ATPase	NA|232aa|up_7|NC_020517.1_1727972_1728668_-	COG0586, DedA, Uncharacterized membrane-associated protein [Function unknown]	NA|241aa|up_6|NC_020517.1_1728718_1729441_+	cd07500, HAD_PSP, phosphoserine phosphatase (PSP), similar to Methanococcus Jannaschii PSP and Saccharomyces cerevisiae SER2p	NA|770aa|up_5|NC_020517.1_1729488_1731798_+	PRK14873, PRK14873, primosomal protein N'	NA|235aa|up_4|NC_020517.1_1732042_1732747_+	cd02603, HAD_sEH-N_like, N-terminal lipase phosphatase domain of human soluble epoxide hydrolase, Escherichia coli YihX/HAD4 alpha-D-glucose 1-phosphate phosphatase, and related domains, may be inactive	NA|338aa|up_3|NC_020517.1_1732886_1733900_+	PRK00005, fmt, methionyl-tRNA formyltransferase; Reviewed	NA|621aa|up_2|NC_020517.1_1734195_1736058_-	PRK12448, PRK12448, dihydroxy-acid dehydratase; Provisional	NA|95aa|up_1|NC_020517.1_1736224_1736509_+	PRK00392, rpoZ, DNA-directed RNA polymerase subunit omega; Reviewed	NA|407aa|up_0|NC_020517.1_1736794_1738015_+	PRK05250, PRK05250, S-adenosylmethionine synthetase; Validated	NA|254aa|down_0|NC_020517.1_1739454_1740216_-	pfam01695, IstB_IS21, IstB-like ATP binding protein	NA|500aa|down_1|NC_020517.1_1740671_1742171_+	COG4584, COG4584, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|260aa|down_2|NC_020517.1_1742167_1742947_+	PRK09183, PRK09183, transposase/IS protein; Provisional	NA|78aa|down_3|NC_020517.1_1748103_1748337_-	NA	cas2|97aa|down_4|NC_020517.1_1748796_1749087_-	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	cas1|344aa|down_5|NC_020517.1_1749143_1750175_-	TIGR03640, cas1_DVULG, CRISPR-associated endonuclease Cas1, subtype I-C/DVULG	cas4|230aa|down_6|NC_020517.1_1750176_1750866_-	TIGR00372, conserved_hypothetical_protein, CRISPR-associated protein Cas4	cas7|284aa|down_7|NC_020517.1_1750904_1751756_-	cd09689, Cas7_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas7	cas8c|653aa|down_8|NC_020517.1_1751759_1753718_-	pfam09709, Cas_Csd1, CRISPR-associated protein (Cas_Csd1)	cas5|235aa|down_9|NC_020517.1_1753720_1754425_-	cd09651, Cas5_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas5
GCF_000220135.1_ASM22013v1	NC_020517	Bifidobacterium breve UCC2003, complete sequence	3	1744412-1747278	2,3,2	PILER-CR,CRISPRCasFinder,CRT	no	cas2,cas1,cas4,cas7,cas8c,cas5,cas3	c2c9_V-U4,DEDDh,cas3,WYL,cas2,cas1,cas4,cas7,cas8c,cas5	 Type I-U?,Type I-U,Type I-C	ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC,ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC,ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC	33,33,33	0	0	NA	NA	I-C:I-C:I-C	42,42,42	42	TypeI-U?,TypeI-U,TypeI-C	c2c9_V-U4,DEDDh,cas3,WYL,cas2,cas1,cas4,cas7,cas8c,cas5	NA,NA|78aa|down_0|NC_020517.1_1748103_1748337_-	NA|241aa|up_9|NC_020517.1_1728718_1729441_+	cd07500, HAD_PSP, phosphoserine phosphatase (PSP), similar to Methanococcus Jannaschii PSP and Saccharomyces cerevisiae SER2p	NA|770aa|up_8|NC_020517.1_1729488_1731798_+	PRK14873, PRK14873, primosomal protein N'	NA|235aa|up_7|NC_020517.1_1732042_1732747_+	cd02603, HAD_sEH-N_like, N-terminal lipase phosphatase domain of human soluble epoxide hydrolase, Escherichia coli YihX/HAD4 alpha-D-glucose 1-phosphate phosphatase, and related domains, may be inactive	NA|338aa|up_6|NC_020517.1_1732886_1733900_+	PRK00005, fmt, methionyl-tRNA formyltransferase; Reviewed	NA|621aa|up_5|NC_020517.1_1734195_1736058_-	PRK12448, PRK12448, dihydroxy-acid dehydratase; Provisional	NA|95aa|up_4|NC_020517.1_1736224_1736509_+	PRK00392, rpoZ, DNA-directed RNA polymerase subunit omega; Reviewed	NA|407aa|up_3|NC_020517.1_1736794_1738015_+	PRK05250, PRK05250, S-adenosylmethionine synthetase; Validated	NA|254aa|up_2|NC_020517.1_1739454_1740216_-	pfam01695, IstB_IS21, IstB-like ATP binding protein	NA|500aa|up_1|NC_020517.1_1740671_1742171_+	COG4584, COG4584, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|260aa|up_0|NC_020517.1_1742167_1742947_+	PRK09183, PRK09183, transposase/IS protein; Provisional	NA|78aa|down_0|NC_020517.1_1748103_1748337_-	NA	cas2|97aa|down_1|NC_020517.1_1748796_1749087_-	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	cas1|344aa|down_2|NC_020517.1_1749143_1750175_-	TIGR03640, cas1_DVULG, CRISPR-associated endonuclease Cas1, subtype I-C/DVULG	cas4|230aa|down_3|NC_020517.1_1750176_1750866_-	TIGR00372, conserved_hypothetical_protein, CRISPR-associated protein Cas4	cas7|284aa|down_4|NC_020517.1_1750904_1751756_-	cd09689, Cas7_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas7	cas8c|653aa|down_5|NC_020517.1_1751759_1753718_-	pfam09709, Cas_Csd1, CRISPR-associated protein (Cas_Csd1)	cas5|235aa|down_6|NC_020517.1_1753720_1754425_-	cd09651, Cas5_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas3|813aa|down_7|NC_020517.1_1754431_1756870_-	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	NA|74aa|down_8|NC_020517.1_1757551_1757773_-	pfam01610, DDE_Tnp_ISL3, Transposase	NA|262aa|down_9|NC_020517.1_1758081_1758867_-	PRK09183, PRK09183, transposase/IS protein; Provisional
GCF_000220135.1_ASM22013v1	NC_020517	Bifidobacterium breve UCC2003, complete sequence	4	2139336-2139482	4	CRISPRCasFinder	no		c2c9_V-U4,DEDDh,cas3,WYL,cas2,cas1,cas4,cas7,cas8c,cas5	Orphan	AATCTCCTAAAATCCTGTCACTAAG	25	0	0	NA	NA	NA	2	2	Orphan	c2c9_V-U4,DEDDh,cas3,WYL,cas2,cas1,cas4,cas7,cas8c,cas5	NA|702aa|up_3|NC_020517.1_2134525_2136631_+,NA|318aa|down_0|NC_020517.1_2139596_2140550_+	NA|75aa|up_9|NC_020517.1_2117637_2117862_-	cd17489, MFS_YfcJ_like, Escherichia coli YfcJ, YhhS, and similar transporters of the Major Facilitator Superfamily	NA|3161aa|up_8|NC_020517.1_2119260_2128743_-	COG4982, COG4982, 3-oxoacyl-[acyl-carrier protein]	NA|541aa|up_7|NC_020517.1_2128782_2130405_-	COG4799, COG4799, Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta) [Lipid metabolism]	NA|627aa|up_6|NC_020517.1_2130397_2132278_-	COG4770, COG4770, Acetyl/propionyl-CoA carboxylase, alpha subunit [Lipid metabolism]	NA|200aa|up_5|NC_020517.1_2132790_2133390_+	pfam02632, BioY, BioY family	NA|297aa|up_4|NC_020517.1_2133391_2134282_-	COG0340, BirA, Biotin-(acetyl-CoA carboxylase) ligase [Coenzyme metabolism]	NA|702aa|up_3|NC_020517.1_2134525_2136631_+	NA	NA|286aa|up_2|NC_020517.1_2136709_2137567_+	COG2508, COG2508, Regulator of polyketide synthase expression [Signal transduction mechanisms / Secondary metabolites biosynthesis, transport, and catabolism]	NA|231aa|up_1|NC_020517.1_2137840_2138533_-	PRK05424, rplA, 50S ribosomal protein L1; Validated	NA|144aa|up_0|NC_020517.1_2138548_2138980_-	PRK00140, rplK, 50S ribosomal protein L11; Validated	NA|318aa|down_0|NC_020517.1_2139596_2140550_+	NA	NA|276aa|down_1|NC_020517.1_2140905_2141733_-	PRK05609, nusG, transcription antitermination protein NusG; Validated	NA|76aa|down_2|NC_020517.1_2141765_2141993_-	PRK07597, secE, preprotein translocase subunit SecE; Reviewed	NA|402aa|down_3|NC_020517.1_2142322_2143528_-	PRK05764, PRK05764, aspartate aminotransferase; Provisional	NA|421aa|down_4|NC_020517.1_2143669_2144932_+	cd10966, CE4_yadE_5s, Putative catalytic polysaccharide deacetylase domain of uncharacterized protein yadE and similar proteins	NA|378aa|down_5|NC_020517.1_2145027_2146161_-	PRK05429, PRK05429, gamma-glutamyl kinase; Provisional	NA|564aa|down_6|NC_020517.1_2146267_2147959_-	PRK12296, obgE, GTPase CgtA; Reviewed	NA|84aa|down_7|NC_020517.1_2148025_2148277_-	PRK05435, rpmA, 50S ribosomal protein L27; Validated	NA|103aa|down_8|NC_020517.1_2148299_2148608_-	PRK05573, rplU, 50S ribosomal protein L21; Validated	NA|1029aa|down_9|NC_020517.1_2148794_2151881_-	TIGR00757, Ribonuclease_E/G-like_protein, ribonuclease, Rne/Rng family
