The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NC_020517	Bifidobacterium breve UCC2003, complete sequence	2422684	364579	469531	2422684	holin,protease,capsid,portal,tRNA,integrase,transposase	Mycobacterium_phage(20.0%)	91	383361:383378	450707:450722
WP_003828126.1|364579_364801_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_014483392.1|365434_366640_+	MFS transporter	NA	NA	NA	NA	NA
WP_003828131.1|366805_367117_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003828132.1|367132_367498_+	hypothetical protein	NA	NA	NA	NA	NA
WP_074525445.1|367544_367706_-|integrase	tyrosine-type recombinase/integrase	integrase	NA	NA	NA	NA
WP_003828134.1|367739_368417_-|integrase	phage integrase N-terminal SAM-like domain-containing protein	integrase	A0A2D1G8E2	Mycobacterium_phage	33.5	6.6e-22
WP_014483394.1|368855_369590_+	aquaporin family protein	NA	NA	NA	NA	NA
WP_015438336.1|369673_372310_-	HAD-IC family P-type ATPase	NA	E4ZFI9	Streptococcus_phage	25.5	4.8e-44
WP_015438337.1|372419_372701_+	metal-sensitive transcriptional regulator	NA	NA	NA	NA	NA
WP_025262722.1|372827_374255_+	DNA recombination protein RmuC	NA	NA	NA	NA	NA
WP_003828139.1|374251_374881_+	hypothetical protein	NA	NA	NA	NA	NA
WP_015438339.1|374969_375908_+	23S rRNA methyltransferase	NA	NA	NA	NA	NA
WP_015438340.1|376108_377047_+	ATP-binding cassette domain-containing protein	NA	M1HS04	Acanthocystis_turfacea_Chlorella_virus	27.6	5.4e-06
WP_015438341.1|377043_378090_+	Permease of ABC transporter system	NA	NA	NA	NA	NA
WP_041473375.1|378165_379128_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011068473.1|379982_380282_+|tRNA	Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC	tRNA	NA	NA	NA	NA
WP_015438343.1|380285_381827_+|tRNA	Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA	tRNA	NA	NA	NA	NA
WP_015438344.1|381851_383351_+|tRNA	Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB	tRNA	NA	NA	NA	NA
383361:383378	attL	CTGGCTCCCCTCTTTGAG	NA	NA	NA	NA
WP_003828149.1|383491_384538_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
383361:383378	attL	CTGGCTCCCCTCTTTGAG	NA	NA	NA	NA
WP_015438345.1|384544_384859_+	DUF2469 domain-containing protein	NA	NA	NA	NA	NA
WP_014483403.1|385029_386643_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_015438346.1|387002_388973_+	transcription termination factor Rho	NA	NA	NA	NA	NA
WP_015438347.1|389205_390324_-	LacI family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_015438348.1|390486_391932_-	MFS transporter	NA	NA	NA	NA	NA
WP_012576707.1|392005_393826_-	glycoside hydrolase family 2	NA	NA	NA	NA	NA
WP_014484532.1|394191_394677_-|transposase	transposase	transposase	NA	NA	NA	NA
WP_080562211.1|396194_397658_+|integrase	tyrosine-type recombinase/integrase	integrase	NA	NA	NA	NA
WP_015438349.1|398024_398414_+	chorismate mutase	NA	NA	NA	NA	NA
WP_015438350.1|398560_400546_+	hypothetical protein	NA	NA	NA	NA	NA
WP_015438351.1|400578_403314_-|tRNA	valine--tRNA ligase	tRNA	A0A2K9KZB8	Tupanvirus	37.1	1.0e-158
400552:400569	attR	CTCAAAGAGGGGAGCCAG	NA	NA	NA	NA
WP_015438352.1|403365_404895_-	Solute binding protein of ABC transporter system for peptide	NA	NA	NA	NA	NA
400552:400569	attR	CTCAAAGAGGGGAGCCAG	NA	NA	NA	NA
WP_015438353.1|404929_405598_-	endonuclease III	NA	NA	NA	NA	NA
WP_041473377.1|405622_406393_-	response regulator transcription factor	NA	W8CYM9	Bacillus_phage	34.0	4.9e-13
WP_015438355.1|406568_407273_-	hypothetical protein	NA	NA	NA	NA	NA
WP_015438356.1|407332_407911_-	manganese efflux pump	NA	NA	NA	NA	NA
WP_015438357.1|408144_408639_-	inorganic diphosphatase	NA	A0A2H4J8U1	uncultured_Caudovirales_phage	46.7	2.4e-29
WP_015438358.1|408724_410953_-	alpha-1,4-glucan--maltose-1-phosphate maltosyltransferase	NA	NA	NA	NA	NA
WP_015438359.1|411199_413134_+	hypothetical protein	NA	NA	NA	NA	NA
WP_041473378.1|413941_414217_+|holin	holin	holin	NA	NA	NA	NA
WP_041473379.1|414280_414592_-	ribbon-helix-helix protein, CopG family	NA	NA	NA	NA	NA
WP_041473380.1|414611_414860_-	hypothetical protein	NA	NA	NA	NA	NA
WP_015438269.1|416650_418111_-|transposase	IS21 family transposase	transposase	NA	NA	NA	NA
WP_015438362.1|419417_420401_+	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_015438363.1|420415_421348_+	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_015438364.1|421439_423065_+	Solute-binding protein of ABC transporter system for sugars	NA	NA	NA	NA	NA
WP_015438365.1|423196_424528_+	glycosyl hydrolase family 30	NA	NA	NA	NA	NA
WP_015438366.1|424533_425223_+	YesL family protein	NA	NA	NA	NA	NA
WP_015438367.1|425219_425894_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_015438368.1|428395_430156_+	beta-galactosidase	NA	NA	NA	NA	NA
WP_147280822.1|430121_430409_-	hypothetical protein	NA	NA	NA	NA	NA
WP_015438369.1|430952_432110_-|transposase	transposase	transposase	I4AZM3	Saccharomonospora_phage	39.9	2.5e-45
WP_015438370.1|432336_433626_+|transposase	IS256 family transposase	transposase	A0A218MNI5	uncultured_virus	35.3	1.8e-28
WP_041473384.1|433662_433875_+	hypothetical protein	NA	NA	NA	NA	NA
WP_015438371.1|433871_434507_+	hypothetical protein	NA	NA	NA	NA	NA
WP_152951927.1|434860_435016_+	hypothetical protein	NA	NA	NA	NA	NA
WP_147280823.1|435028_436234_+|portal	phage portal protein	portal	A0A2P1CHJ4	Mycobacterium_phage	28.4	7.6e-29
WP_015438372.1|436178_437522_+	hypothetical protein	NA	A0A1D8EU68	Propionibacterium_phage	41.9	1.1e-15
WP_015438373.1|437733_438225_+	hypothetical protein	NA	NA	NA	NA	NA
WP_015438374.1|438234_439134_+|capsid	phage major capsid protein	capsid	I3WWP3	Mycobacterium_virus	36.0	7.7e-34
WP_015438375.1|439439_439673_+	hypothetical protein	NA	A0A059NT58	Lactococcus_phage	43.1	5.1e-06
WP_044051858.1|439759_440125_-	transcriptional regulator	NA	NA	NA	NA	NA
WP_015438377.1|440133_440328_-	hypothetical protein	NA	A0A0R6PD93	Moraxella_phage	45.7	2.7e-05
WP_015438378.1|440391_441216_-|integrase	tyrosine-type recombinase/integrase	integrase	A0A2D1G8E2	Mycobacterium_phage	42.6	7.0e-50
WP_014483418.1|441618_442653_+	homoserine O-succinyltransferase	NA	NA	NA	NA	NA
WP_003828177.1|442997_443807_+	F0F1 ATP synthase subunit A	NA	NA	NA	NA	NA
WP_003831420.1|443904_444132_+	ATP synthase F0 subunit C	NA	NA	NA	NA	NA
WP_015438379.1|444188_444707_+	F0F1 ATP synthase subunit B	NA	NA	NA	NA	NA
WP_015438380.1|444741_445578_+	F0F1 ATP synthase subunit delta	NA	NA	NA	NA	NA
WP_003828181.1|445646_447278_+	F0F1 ATP synthase subunit alpha	NA	NA	NA	NA	NA
WP_003828182.1|447281_448205_+	F0F1 ATP synthase subunit gamma	NA	NA	NA	NA	NA
WP_015438381.1|448213_449686_+	F0F1 ATP synthase subunit beta	NA	NA	NA	NA	NA
WP_015438382.1|449685_449979_+	F0F1 ATP synthase subunit epsilon	NA	NA	NA	NA	NA
WP_003828185.1|450062_450767_+	endonuclease NucS	NA	NA	NA	NA	NA
WP_015438384.1|450814_451768_-	FKBP-type peptidyl-prolyl cis-trans isomerase	NA	NA	NA	NA	NA
WP_015438385.1|451869_453108_+	hypothetical protein	NA	NA	NA	NA	NA
WP_015438386.1|453107_454112_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014483422.1|454334_455306_+	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_003831436.1|455444_456071_-	adenylate cyclase	NA	NA	NA	NA	NA
WP_015438387.1|456465_456603_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003828192.1|456748_457138_+	endoribonuclease L-PSP	NA	NA	NA	NA	NA
WP_015438388.1|457263_458217_+	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
WP_003831442.1|458410_459412_+	NAD(P)-dependent glycerol-3-phosphate dehydrogenase	NA	NA	NA	NA	NA
WP_015438389.1|459457_460645_+	D-alanine--D-alanine ligase	NA	NA	NA	NA	NA
WP_015438390.1|460909_462076_+	Solute-binding protein of ABC transporter system	NA	NA	NA	NA	NA
WP_015438391.1|462087_463026_+	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_044051860.1|463061_463934_+	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_015438392.1|463930_465250_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	36.8	2.2e-29
WP_015438393.1|465666_466704_+|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_015438394.1|466835_467627_-	mechanosensitive ion channel	NA	NA	NA	NA	NA
WP_015438395.1|467807_469241_-	aspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_041473387.1|469372_469531_-|transposase	transposase	transposase	NA	NA	NA	NA
>prophage 2
NC_020517	Bifidobacterium breve UCC2003, complete sequence	2422684	1864022	1928067	2422684	protease,integrase,tRNA,transposase	Escherichia_phage(12.5%)	55	1913095:1913111	1937334:1937350
WP_015439117.1|1864022_1866122_-|protease	ATP-dependent zinc metalloprotease FtsH	protease	A9YVR1	Ostreococcus_tauri_virus	46.8	3.0e-105
WP_003830048.1|1866118_1866682_-	hypoxanthine phosphoribosyltransferase	NA	A0A1V0SEQ1	Hokovirus	27.6	3.8e-07
WP_003830046.1|1866668_1867820_-|tRNA	tRNA lysidine(34) synthetase TilS	tRNA	NA	NA	NA	NA
WP_015439118.1|1867855_1869352_-	D-alanyl-D-alanine carboxypeptidase	NA	NA	NA	NA	NA
WP_015439119.1|1869376_1871047_-	hypothetical protein	NA	NA	NA	NA	NA
WP_015439120.1|1871046_1872129_-	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	33.5	2.6e-20
WP_015439121.1|1872561_1873785_-	glycosyltransferase family 2 protein	NA	NA	NA	NA	NA
WP_015439122.1|1873784_1875377_-	AI-2E family transporter	NA	NA	NA	NA	NA
WP_015439123.1|1875454_1876381_+	glycosyltransferase family 2 protein	NA	NA	NA	NA	NA
WP_015439124.1|1876516_1877668_-	lactaldehyde reductase	NA	NA	NA	NA	NA
WP_015439125.1|1878019_1879324_+	class I SAM-dependent methyltransferase	NA	A0A2I2L5L3	Orpheovirus	34.9	1.7e-37
WP_041473448.1|1879810_1880734_+|tRNA	tRNA (guanosine(46)-N7)-methyltransferase TrmB	tRNA	NA	NA	NA	NA
WP_014484172.1|1881569_1881719_+	hypothetical protein	NA	NA	NA	NA	NA
WP_015439128.1|1881863_1883126_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_014483316.1|1883604_1884390_-	ATP-binding protein	NA	A0A2L1IVB6	Escherichia_phage	38.0	1.7e-37
WP_015438265.1|1884392_1885874_-|transposase	IS21 family transposase	transposase	NA	NA	NA	NA
WP_015439130.1|1886250_1886850_+	ParA family protein	NA	D3JZ99	Mycobacterium_phage	37.6	1.7e-21
WP_015439131.1|1886846_1887098_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014484177.1|1887214_1887427_-	hypothetical protein	NA	NA	NA	NA	NA
WP_015439132.1|1887462_1888974_+	ABC-F family ATP-binding cassette domain-containing protein	NA	A0A1B0RXA0	Streptococcus_phage	27.7	1.4e-19
WP_012577972.1|1889139_1889658_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_003832791.1|1890007_1890655_-	HAD-IB family phosphatase	NA	NA	NA	NA	NA
WP_041473449.1|1890976_1895326_+	LPXTG cell wall anchor domain-containing protein	NA	NA	NA	NA	NA
WP_015439135.1|1895678_1896422_+	GyrI-like domain-containing protein	NA	NA	NA	NA	NA
WP_015439136.1|1896553_1897555_+	choloylglycine hydrolase family protein	NA	M1HVK5	Paramecium_bursaria_Chlorella_virus	33.3	3.5e-27
WP_015439137.1|1897586_1898126_+	hypothetical protein	NA	NA	NA	NA	NA
WP_015439138.1|1898300_1898726_+	hypothetical protein	NA	NA	NA	NA	NA
WP_157825762.1|1899047_1899476_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_015439140.1|1899486_1900056_+	PIN domain-containing protein	NA	K4HZX4	Acidithiobacillus_phage	38.2	6.2e-21
WP_015439141.1|1900088_1901357_+	hypothetical protein	NA	NA	NA	NA	NA
WP_015438370.1|1901484_1902774_+|transposase	IS256 family transposase	transposase	A0A218MNI5	uncultured_virus	35.3	1.8e-28
WP_016462535.1|1902898_1903105_+	hypothetical protein	NA	NA	NA	NA	NA
WP_015439143.1|1903133_1903979_+	hypothetical protein	NA	NA	NA	NA	NA
WP_015439144.1|1904007_1904145_+	hypothetical protein	NA	NA	NA	NA	NA
WP_041473299.1|1904225_1905305_+	CHAP domain-containing protein	NA	Q4Z9D9	Staphylococcus_phage	32.7	1.5e-07
WP_015439146.1|1905338_1906634_+	hypothetical protein	NA	NA	NA	NA	NA
WP_015439147.1|1906902_1907907_+	DNA-protecting protein DprA	NA	S6BFL3	Thermus_phage	41.1	2.0e-30
WP_015439148.1|1907903_1908728_+	hypothetical protein	NA	NA	NA	NA	NA
WP_015439149.1|1908903_1910607_-	ATP-dependent helicase	NA	NA	NA	NA	NA
WP_015439150.1|1910593_1912186_-	AAA family ATPase	NA	NA	NA	NA	NA
WP_015439151.1|1912373_1914038_-	type IV secretory system conjugative DNA transfer family protein	NA	NA	NA	NA	NA
1913095:1913111	attL	CCTTCGAGCATGTCGCG	NA	NA	NA	NA
WP_015439152.1|1914034_1914415_-	hypothetical protein	NA	NA	NA	NA	NA
WP_015439153.1|1914411_1914732_-	hypothetical protein	NA	NA	NA	NA	NA
WP_015439154.1|1914721_1915870_-	antirestriction protein ArdA	NA	NA	NA	NA	NA
WP_014483316.1|1916312_1917098_-	ATP-binding protein	NA	A0A2L1IVB6	Escherichia_phage	38.0	1.7e-37
WP_015438265.1|1917100_1918582_-|transposase	IS21 family transposase	transposase	NA	NA	NA	NA
WP_015439156.1|1919455_1920325_-	PcfB family protein	NA	NA	NA	NA	NA
WP_015439157.1|1920393_1921824_-	relaxase/mobilization nuclease domain-containing protein	NA	NA	NA	NA	NA
WP_015439158.1|1921814_1922219_-	plasmid mobilization relaxosome protein MobC	NA	NA	NA	NA	NA
WP_015439159.1|1922511_1922880_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014484200.1|1922913_1923240_+	hypothetical protein	NA	NA	NA	NA	NA
WP_015439160.1|1923324_1924899_-	ParB/RepB/Spo0J family partition protein	NA	I3NLC2	Bifidobacterium_phage	34.7	2.8e-47
WP_015439161.1|1924976_1925591_-	DUF4192 family protein	NA	NA	NA	NA	NA
WP_015439162.1|1926030_1927395_-|integrase	site-specific integrase	integrase	H7BW99	unidentified_phage	26.2	3.1e-10
WP_003830024.1|1927803_1928067_-|integrase	tyrosine-type recombinase/integrase	integrase	A0A0E3XBN7	Gordonia_phage	44.0	1.1e-12
1937334:1937350	attR	CGCGACATGCTCGAAGG	NA	NA	NA	NA
