assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000219725.1_ASM21972v1	NC_015732	Treponema caldarium DSM 7334, complete sequence	1	1242339-1242425	1	CRISPRCasFinder	no		DEDDh,cas3,csa3,DinG,cas2,cas1,cas4,cas7,cas8c,cas5,WYL	Orphan	TGGTTACAATTTGTTACAAAAATA	24	0	0	NA	NA	NA	1	1	Orphan	DEDDh,cas3,csa3,DinG,cas2,cas1,cas4,cas7,cas8c,cas5,WYL	NA|208aa|up_8|NC_015732.1_1233024_1233648_+,NA|283aa|up_0|NC_015732.1_1241334_1242183_-,NA|146aa|down_2|NC_015732.1_1244579_1245017_-	NA|650aa|up_9|NC_015732.1_1230960_1232910_-	PRK07229, PRK07229, aconitate hydratase; Validated	NA|208aa|up_8|NC_015732.1_1233024_1233648_+	NA	NA|411aa|up_7|NC_015732.1_1233657_1234890_+	pfam07238, PilZ, PilZ domain	NA|183aa|up_6|NC_015732.1_1234945_1235494_-	PRK03660, PRK03660, anti-sigma F factor; Provisional	NA|113aa|up_5|NC_015732.1_1235519_1235858_-	cd07043, STAS_anti-anti-sigma_factors, Sulphate Transporter and Anti-Sigma factor antagonist) domain of anti-anti-sigma factors, key regulators of anti-sigma factors by phosphorylation	NA|640aa|up_4|NC_015732.1_1235882_1237802_-	COG2208, RsbU, Serine phosphatase RsbU, regulator of sigma subunit [Signal transduction mechanisms / Transcription]	NA|560aa|up_3|NC_015732.1_1237924_1239604_-	PRK11819, PRK11819, putative ABC transporter ATP-binding protein; Reviewed	NA|229aa|up_2|NC_015732.1_1239665_1240352_-	TIGR01065, Hypothetical_UPF0073_protein_yqfA	NA|292aa|up_1|NC_015732.1_1240392_1241268_-	COG2961, ComJ, Protein involved in catabolism of external DNA [General function prediction only]	NA|283aa|up_0|NC_015732.1_1241334_1242183_-	NA	NA|321aa|down_0|NC_015732.1_1242441_1243404_-	COG0618, COG0618, Exopolyphosphatase-related proteins [General function prediction only]	NA|390aa|down_1|NC_015732.1_1243410_1244580_-	pfam00557, Peptidase_M24, Metallopeptidase family M24	NA|146aa|down_2|NC_015732.1_1244579_1245017_-	NA	NA|314aa|down_3|NC_015732.1_1245117_1246059_-	PRK02102, PRK02102, ornithine carbamoyltransferase; Validated	NA|887aa|down_4|NC_015732.1_1246223_1248884_+	sd00006, TPR, Tetratricopeptide repeat	NA|243aa|down_5|NC_015732.1_1249032_1249761_-	TIGR02495, RADICAL-ACTIVATING_ENZYME, anaerobic ribonucleoside-triphosphate reductase activating protein	NA|182aa|down_6|NC_015732.1_1249772_1250318_-	pfam13597, NRDD, Anaerobic ribonucleoside-triphosphate reductase	NA|687aa|down_7|NC_015732.1_1250314_1252375_-	PRK08270, PRK08270, ribonucleoside triphosphate reductase	NA|154aa|down_8|NC_015732.1_1252371_1252833_-	PRK00464, nrdR, transcriptional repressor NrdR	NA|380aa|down_9|NC_015732.1_1253107_1254247_+	cd03809, GT4_MtfB-like, glycosyltransferases MtfB, WbpX, and similar proteins
GCF_000219725.1_ASM21972v1	NC_015732	Treponema caldarium DSM 7334, complete sequence	2	1870223-1870322	2	CRISPRCasFinder	no		DEDDh,cas3,csa3,DinG,cas2,cas1,cas4,cas7,cas8c,cas5,WYL	Orphan	CCGTCTACAGTGTTTTTGCGGGCTCTGCTGCC	32	0	0	NA	NA	NA	1	1	Orphan	DEDDh,cas3,csa3,DinG,cas2,cas1,cas4,cas7,cas8c,cas5,WYL	NA|299aa|up_3|NC_015732.1_1866545_1867442_+,NA|288aa|up_2|NC_015732.1_1867459_1868323_+,NA|73aa|up_1|NC_015732.1_1868313_1868532_+,NA	NA|152aa|up_9|NC_015732.1_1860263_1860719_+	PRK02261, PRK02261, methylaspartate mutase subunit S; Provisional	NA|469aa|up_8|NC_015732.1_1860720_1862127_+	pfam13941, MutL, MutL protein	NA|485aa|up_7|NC_015732.1_1862113_1863568_+	pfam06368, Met_asp_mut_E, Methylaspartate mutase E chain (MutE)	NA|426aa|up_6|NC_015732.1_1863564_1864842_+	COG3799, Mal, Methylaspartate ammonia-lyase [Amino acid transport and metabolism]	NA|466aa|up_5|NC_015732.1_1864834_1866232_+	pfam07287, AtuA, Acyclic terpene utilisation family protein AtuA	NA|107aa|up_4|NC_015732.1_1866228_1866549_+	pfam14330, DUF4387, Domain of unknown function (DUF4387)	NA|299aa|up_3|NC_015732.1_1866545_1867442_+	NA	NA|288aa|up_2|NC_015732.1_1867459_1868323_+	NA	NA|73aa|up_1|NC_015732.1_1868313_1868532_+	NA	NA|553aa|up_0|NC_015732.1_1868524_1870183_+	cd02028, UMPK_like, Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2	NA|452aa|down_0|NC_015732.1_1870729_1872085_-	COG1157, FliI, Flagellar biosynthesis/type III secretory pathway ATPase [Cell motility and secretion / Intracellular trafficking and secretion]	NA|317aa|down_1|NC_015732.1_1872096_1873047_-	PRK06669, fliH, flagellar assembly protein H; Validated	NA|357aa|down_2|NC_015732.1_1873050_1874121_-	PRK05686, fliG, flagellar motor switch protein G; Validated	NA|569aa|down_3|NC_015732.1_1874124_1875831_-	PRK06007, fliF, flagellar basal body M-ring protein FliF	NA|126aa|down_4|NC_015732.1_1875860_1876238_-	PRK01482, fliE, flagellar hook-basal body complex protein FliE	NA|153aa|down_5|NC_015732.1_1876241_1876700_-	PRK05681, flgC, flagellar basal body rod protein FlgC; Reviewed	NA|140aa|down_6|NC_015732.1_1876726_1877146_-	PRK12622, flgB, flagellar basal body rod protein FlgB; Provisional	NA|493aa|down_7|NC_015732.1_1877195_1878674_-	PRK05201, hslU, ATP-dependent protease ATPase subunit HslU	NA|178aa|down_8|NC_015732.1_1878676_1879210_-	PRK05456, PRK05456, ATP-dependent protease subunit HslV	NA|309aa|down_9|NC_015732.1_1879206_1880133_-	TIGR02224, Tyrosine_recombinase_XerC, tyrosine recombinase XerC
GCF_000219725.1_ASM21972v1	NC_015732	Treponema caldarium DSM 7334, complete sequence	3	2125870-2129407	1,3,1	PILER-CR,CRISPRCasFinder,CRT	no	cas2,cas1,cas4,cas7,cas8c,cas5,cas3	DEDDh,cas3,csa3,DinG,cas2,cas1,cas4,cas7,cas8c,cas5,WYL	 Type I-U?,Type I-U,Type I-C	GTTTCAATCCACGCCCCCCGAGCGGGGAGCGAC,GTTTCAATCCACGCCCCCCGAGCGGGGAGCGAC,GTTTCAATCCACGCCCCNCCGAGCGGGGAGCGAC	33,33,34	0	0	NA	NA	NA:NA:NA	52,52,52	52	TypeI-U,TypeI-U?,TypeI-C	DEDDh,cas3,csa3,DinG,cas2,cas1,cas4,cas7,cas8c,cas5,WYL	NA|235aa|up_7|NC_015732.1_2120727_2121432_-,NA|81aa|up_6|NC_015732.1_2121892_2122135_-,NA|92aa|up_5|NC_015732.1_2122263_2122539_-,NA|203aa|up_3|NC_015732.1_2123467_2124076_+,NA|78aa|up_2|NC_015732.1_2124227_2124461_-,NA	NA|1211aa|up_9|NC_015732.1_2115804_2119437_-	PRK09525, lacZ, beta-galactosidase	NA|384aa|up_8|NC_015732.1_2119433_2120585_-	cd01541, PBP1_AraR, ligand-binding domain of DNA transcription repressor specific for arabinose (AraR) which is a member of the LacI-GalR family of bacterial transcription regulators	NA|235aa|up_7|NC_015732.1_2120727_2121432_-	NA	NA|81aa|up_6|NC_015732.1_2121892_2122135_-	NA	NA|92aa|up_5|NC_015732.1_2122263_2122539_-	NA	NA|250aa|up_4|NC_015732.1_2122606_2123356_-	cd01413, SIR2_Af2, SIR2_Af2: Archaeal and prokaryotic group which includes Archaeoglobus fulgidus Sir2-Af2, Sulfolobus solfataricus ssSir2, and several bacterial homologs; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation	NA|203aa|up_3|NC_015732.1_2123467_2124076_+	NA	NA|78aa|up_2|NC_015732.1_2124227_2124461_-	NA	NA|90aa|up_1|NC_015732.1_2125197_2125467_-	pfam13005, zf-IS66, zinc-finger binding domain of transposase IS66	NA|87aa|up_0|NC_015732.1_2125573_2125834_-	pfam05717, TnpB_IS66, IS66 Orf2 like protein	NA|488aa|down_0|NC_015732.1_2129532_2130996_+	pfam13586, DDE_Tnp_1_2, Transposase DDE domain	cas2|97aa|down_1|NC_015732.1_2133834_2134125_-	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	cas1|344aa|down_2|NC_015732.1_2134141_2135173_-	TIGR03640, cas1_DVULG, CRISPR-associated endonuclease Cas1, subtype I-C/DVULG	cas4|229aa|down_3|NC_015732.1_2135156_2135843_-	TIGR00372, conserved_hypothetical_protein, CRISPR-associated protein Cas4	cas7|290aa|down_4|NC_015732.1_2135887_2136757_-	pfam05107, Cas_Cas7, CRISPR-associated protein Cas7	cas8c|627aa|down_5|NC_015732.1_2136854_2138735_-	pfam09709, Cas_Csd1, CRISPR-associated protein (Cas_Csd1)	cas5|223aa|down_6|NC_015732.1_2138731_2139400_-	cd09752, Cas5_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas3|1081aa|down_7|NC_015732.1_2139460_2142703_-	cd17930, DEXHc_cas3, DEXH/Q-box helicase domain of Cas3	NA|57aa|down_8|NC_015732.1_2143084_2143255_+	TIGR02456, Trehalose_synthase, trehalose synthase	NA|419aa|down_9|NC_015732.1_2143314_2144571_-	PRK05912, PRK05912, tyrosyl-tRNA synthetase; Validated
GCF_000219725.1_ASM21972v1	NC_015732	Treponema caldarium DSM 7334, complete sequence	4	2131097-2133630	4,2,2	CRISPRCasFinder,CRT,PILER-CR	no	cas2,cas1,cas4,cas7,cas8c,cas5,cas3	DEDDh,cas3,csa3,DinG,cas2,cas1,cas4,cas7,cas8c,cas5,WYL	 Type I-U?,Type I-U,Type I-C	GTTTCAATCCACGCCCCCCGAGCGGGGAGCGAC,GTTTCAATCCACGCCCCCCGAGCGGGGAGCGAC,GTTTCAATCCACGCCCCCCGAGCGGGGAGCGAC	33,33,33	0	0	NA	NA	NA:NA:NA	37,37,34	37	TypeI-U,TypeI-U?,TypeI-C	DEDDh,cas3,csa3,DinG,cas2,cas1,cas4,cas7,cas8c,cas5,WYL	NA|235aa|up_8|NC_015732.1_2120727_2121432_-,NA|81aa|up_7|NC_015732.1_2121892_2122135_-,NA|92aa|up_6|NC_015732.1_2122263_2122539_-,NA|203aa|up_4|NC_015732.1_2123467_2124076_+,NA|78aa|up_3|NC_015732.1_2124227_2124461_-,NA	NA|384aa|up_9|NC_015732.1_2119433_2120585_-	cd01541, PBP1_AraR, ligand-binding domain of DNA transcription repressor specific for arabinose (AraR) which is a member of the LacI-GalR family of bacterial transcription regulators	NA|235aa|up_8|NC_015732.1_2120727_2121432_-	NA	NA|81aa|up_7|NC_015732.1_2121892_2122135_-	NA	NA|92aa|up_6|NC_015732.1_2122263_2122539_-	NA	NA|250aa|up_5|NC_015732.1_2122606_2123356_-	cd01413, SIR2_Af2, SIR2_Af2: Archaeal and prokaryotic group which includes Archaeoglobus fulgidus Sir2-Af2, Sulfolobus solfataricus ssSir2, and several bacterial homologs; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation	NA|203aa|up_4|NC_015732.1_2123467_2124076_+	NA	NA|78aa|up_3|NC_015732.1_2124227_2124461_-	NA	NA|90aa|up_2|NC_015732.1_2125197_2125467_-	pfam13005, zf-IS66, zinc-finger binding domain of transposase IS66	NA|87aa|up_1|NC_015732.1_2125573_2125834_-	pfam05717, TnpB_IS66, IS66 Orf2 like protein	NA|488aa|up_0|NC_015732.1_2129532_2130996_+	pfam13586, DDE_Tnp_1_2, Transposase DDE domain	cas2|97aa|down_0|NC_015732.1_2133834_2134125_-	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	cas1|344aa|down_1|NC_015732.1_2134141_2135173_-	TIGR03640, cas1_DVULG, CRISPR-associated endonuclease Cas1, subtype I-C/DVULG	cas4|229aa|down_2|NC_015732.1_2135156_2135843_-	TIGR00372, conserved_hypothetical_protein, CRISPR-associated protein Cas4	cas7|290aa|down_3|NC_015732.1_2135887_2136757_-	pfam05107, Cas_Cas7, CRISPR-associated protein Cas7	cas8c|627aa|down_4|NC_015732.1_2136854_2138735_-	pfam09709, Cas_Csd1, CRISPR-associated protein (Cas_Csd1)	cas5|223aa|down_5|NC_015732.1_2138731_2139400_-	cd09752, Cas5_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas3|1081aa|down_6|NC_015732.1_2139460_2142703_-	cd17930, DEXHc_cas3, DEXH/Q-box helicase domain of Cas3	NA|57aa|down_7|NC_015732.1_2143084_2143255_+	TIGR02456, Trehalose_synthase, trehalose synthase	NA|419aa|down_8|NC_015732.1_2143314_2144571_-	PRK05912, PRK05912, tyrosyl-tRNA synthetase; Validated	NA|189aa|down_9|NC_015732.1_2144706_2145273_-	cd06260, DUF820, Domain of unknown function (DUF820)
