The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NC_015740	Pseudomonas stutzeri, complete sequence	4547930	130113	162539	4547930	plate,transposase	Ralstonia_phage(28.57%)	28	NA	NA
WP_013981264.1|130113_131445_-|plate	type VI secretion system baseplate subunit TssK	plate	NA	NA	NA	NA
WP_013981265.1|131447_131930_-	type VI secretion system lipoprotein TssJ	NA	NA	NA	NA	NA
WP_013981266.1|131934_133131_-	type VI secretion system-associated FHA domain protein TagH	NA	NA	NA	NA	NA
WP_013981267.1|133151_133286_-	hypothetical protein	NA	NA	NA	NA	NA
WP_013981268.1|134092_135073_+|transposase	IS5-like element ISPa52 family transposase	transposase	A0A077K814	Ralstonia_phage	55.8	7.2e-94
WP_013981269.1|135255_136467_-	M24 family metallopeptidase	NA	NA	NA	NA	NA
WP_033997557.1|136579_137512_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_013981271.1|137660_138512_+	transporter substrate-binding domain-containing protein	NA	NA	NA	NA	NA
WP_013981272.1|138543_139194_+	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_013981273.1|139204_139864_+	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_013981274.1|139874_140672_+	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	36.4	1.4e-26
WP_013981275.1|140791_141751_+	DMT family transporter	NA	NA	NA	NA	NA
WP_003294186.1|141909_142155_-	AbrB/MazE/SpoVT family DNA-binding domain-containing protein	NA	NA	NA	NA	NA
WP_033997559.1|142497_142974_+	DUF2384 domain-containing protein	NA	NA	NA	NA	NA
WP_041771610.1|142970_143462_+	RES family NAD+ phosphorylase	NA	NA	NA	NA	NA
WP_095460747.1|143917_145139_+|transposase	IS3 family transposase	transposase	Q8W6R2	Burkholderia_virus	71.0	1.1e-110
WP_071536819.1|145428_146928_+	DUF3375 domain-containing protein	NA	NA	NA	NA	NA
WP_013981280.1|146930_147680_+	DUF4194 domain-containing protein	NA	NA	NA	NA	NA
WP_003459721.1|149787_150591_-	ATP-binding protein	NA	A0A2L1IVB6	Escherichia_phage	36.2	4.0e-34
WP_148263433.1|150583_152083_-|transposase	IS21 family transposase	transposase	NA	NA	NA	NA
WP_013981284.1|152674_153820_+	restriction endonuclease subunit S	NA	NA	NA	NA	NA
WP_041771611.1|154042_155890_+	dynamin family protein	NA	NA	NA	NA	NA
WP_013981287.1|155828_156584_-	ATP-binding protein	NA	K4HZD4	Acidithiobacillus_phage	55.1	5.4e-73
WP_013981288.1|156601_158116_-|transposase	IS21 family transposase	transposase	K4I413	Acidithiobacillus_phage	52.7	1.6e-145
WP_013981289.1|158275_158413_-	hypothetical protein	NA	NA	NA	NA	NA
WP_013981290.1|158427_160671_+	dynamin family protein	NA	NA	NA	NA	NA
WP_013981291.1|160663_161518_+	hypothetical protein	NA	NA	NA	NA	NA
WP_013981292.1|161558_162539_+|transposase	IS5 family transposase	transposase	A0A077K814	Ralstonia_phage	57.7	1.1e-94
>prophage 2
NC_015740	Pseudomonas stutzeri, complete sequence	4547930	1988293	1996680	4547930		uncultured_Caudovirales_phage(85.71%)	9	NA	NA
WP_011913125.1|1988293_1990933_+	PAS-domain containing protein	NA	A0A2K9L5I4	Tupanvirus	28.6	2.6e-13
WP_013982688.1|1990963_1991968_-	glutathione S-transferase family protein	NA	NA	NA	NA	NA
WP_013982689.1|1992052_1993036_-	glycosyl transferase family protein	NA	A0A2H4JBY5	uncultured_Caudovirales_phage	74.6	1.2e-141
WP_013982690.1|1993032_1993365_-	TusE/DsrC/DsvC family sulfur relay protein	NA	A0A2H4J8B6	uncultured_Caudovirales_phage	74.3	1.5e-40
WP_013982691.1|1993361_1993664_-	sulfurtransferase complex subunit TusB	NA	A0A2H4JG28	uncultured_Caudovirales_phage	57.0	2.7e-23
WP_013982692.1|1993663_1994023_-	sulfurtransferase complex subunit TusC	NA	A0A2H4J8C0	uncultured_Caudovirales_phage	63.3	1.2e-33
WP_013982693.1|1994022_1994415_-	sulfurtransferase complex subunit TusD	NA	A0A2H4JA39	uncultured_Caudovirales_phage	72.1	1.5e-47
WP_013982694.1|1994643_1995912_+	MFS transporter	NA	NA	NA	NA	NA
WP_013982695.1|1996011_1996680_-	Bax inhibitor-1/YccA family protein	NA	A0A2H4JFM9	uncultured_Caudovirales_phage	77.1	5.8e-87
>prophage 3
NC_015740	Pseudomonas stutzeri, complete sequence	4547930	2971097	3017950	4547930	protease,integrase,transposase	uncultured_Caudovirales_phage(28.57%)	34	2969475:2969497	3018072:3018094
2969475:2969497	attL	TGGCGGAGAGATAGGGATTTGAA	NA	NA	NA	NA
WP_013983386.1|2971097_2973137_-|protease	protease Lon-related BREX system protein BrxL	protease	NA	NA	NA	NA
WP_013983387.1|2973151_2975779_-	BREX-1 system phosphatase PglZ type A	NA	NA	NA	NA	NA
WP_013983388.1|2975877_2976450_-	AAA family ATPase	NA	NA	NA	NA	NA
WP_013983389.1|2976451_2977678_-	B12-binding domain-containing radical SAM protein	NA	NA	NA	NA	NA
WP_013983390.1|2977674_2977914_-	hypothetical protein	NA	NA	NA	NA	NA
WP_148263416.1|2978011_2980222_-	ankyrin repeat domain-containing protein	NA	NA	NA	NA	NA
WP_148263417.1|2982182_2983973_-	BREX-1 system adenine-specific DNA-methyltransferase PglX	NA	NA	NA	NA	NA
WP_013983394.1|2983969_2986966_-	RNA-directed DNA polymerase	NA	NA	NA	NA	NA
WP_148263439.1|2987162_2988701_-	hypothetical protein	NA	NA	NA	NA	NA
WP_013983398.1|2990890_2992369_-	Fic family protein	NA	NA	NA	NA	NA
WP_013983399.1|2992552_2993539_-	hypothetical protein	NA	NA	NA	NA	NA
WP_013983400.1|2993531_2994230_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011911830.1|2995697_2996501_-	ATP-binding protein	NA	A0A2L1IVB6	Escherichia_phage	36.2	5.2e-34
WP_148263440.1|2996493_2997993_-|transposase	IS21 family transposase	transposase	NA	NA	NA	NA
WP_068982038.1|2998038_2998983_+|integrase	integrase domain-containing protein	integrase	NA	NA	NA	NA
WP_013983404.1|2998979_2999333_+	hypothetical protein	NA	NA	NA	NA	NA
WP_041771793.1|2999373_3000654_-	translesion error-prone DNA polymerase V subunit UmuC	NA	I6RSM4	Salmonella_phage	52.9	1.3e-119
WP_011914412.1|3000640_3001072_-	translesion error-prone DNA polymerase V autoproteolytic subunit	NA	A0A1B1ITQ0	uncultured_Mediterranean_phage	40.4	1.8e-09
WP_013983407.1|3001154_3001904_+	SOS response-associated peptidase family protein	NA	A0A2H4J5W2	uncultured_Caudovirales_phage	45.3	1.3e-55
WP_158307521.1|3002293_3002449_+	hypothetical protein	NA	NA	NA	NA	NA
WP_013983409.1|3002484_3003465_-|transposase	IS5-like element ISPst7 family transposase	transposase	A0A077K814	Ralstonia_phage	58.3	7.7e-96
WP_008930575.1|3004757_3005279_-	lipoprotein signal peptidase	NA	NA	NA	NA	NA
WP_009686176.1|3005332_3006772_-	apolipoprotein N-acyltransferase	NA	NA	NA	NA	NA
WP_013983411.1|3007066_3007825_-	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_008928737.1|3007970_3008867_-	cation transporter	NA	NA	NA	NA	NA
WP_008175821.1|3008965_3009400_+	Cd(II)/Pb(II)-responsive transcriptional regulator	NA	NA	NA	NA	NA
WP_148263419.1|3010291_3011838_-|transposase	IS3 family transposase	transposase	NA	NA	NA	NA
WP_013983416.1|3012692_3013814_+	AAA family ATPase	NA	A0A2H4JFA4	uncultured_Caudovirales_phage	40.8	7.3e-34
WP_013983417.1|3014135_3014366_-	hypothetical protein	NA	NA	NA	NA	NA
WP_037005245.1|3014551_3015001_-	hypothetical protein	NA	NA	NA	NA	NA
WP_169313167.1|3015196_3015514_-	hypothetical protein	NA	NA	NA	NA	NA
WP_013983419.1|3015782_3016175_+	hypothetical protein	NA	NA	NA	NA	NA
WP_020308482.1|3016508_3016721_+	hypothetical protein	NA	NA	NA	NA	NA
WP_020308481.1|3016792_3017950_+|integrase	tyrosine-type recombinase/integrase	integrase	Q76UT6	Pseudomonas_virus	42.0	1.7e-46
3018072:3018094	attR	TGGCGGAGAGATAGGGATTTGAA	NA	NA	NA	NA
>prophage 4
NC_015740	Pseudomonas stutzeri, complete sequence	4547930	3259877	3267696	4547930		Planktothrix_phage(33.33%)	7	NA	NA
WP_041771976.1|3259877_3260597_+	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	37.4	2.9e-28
WP_026012532.1|3260620_3261346_+	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	38.0	1.7e-28
WP_011914102.1|3261426_3263007_-	glutamine-hydrolyzing GMP synthase	NA	A0A1V0SH76	Hokovirus	32.6	4.5e-21
WP_013983621.1|3263123_3264593_-	IMP dehydrogenase	NA	A0A1V0SHK8	Klosneuvirus	41.4	3.1e-93
WP_013983622.1|3264719_3265271_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011914105.1|3265401_3266778_+	exodeoxyribonuclease VII large subunit	NA	A0A1V0SD82	Indivirus	31.7	8.1e-35
WP_013983623.1|3266871_3267696_+	M23 family metallopeptidase	NA	S5M424	Bacillus_phage	33.6	6.8e-13
>prophage 5
NC_015740	Pseudomonas stutzeri, complete sequence	4547930	3591086	3663552	4547930	protease,integrase,transposase,tRNA	Acidithiobacillus_phage(35.71%)	53	3654557:3654616	3673437:3675173
WP_011914370.1|3591086_3592004_-|tRNA	tRNA pseudouridine(55) synthase TruB	tRNA	NA	NA	NA	NA
WP_011914371.1|3592006_3592396_-	30S ribosome-binding factor RbfA	NA	NA	NA	NA	NA
WP_013983873.1|3592498_3595015_-	translation initiation factor IF-2	NA	A0A2H4UTS4	Bodo_saltans_virus	23.9	1.4e-21
WP_011914373.1|3595043_3596525_-	transcription termination/antitermination protein NusA	NA	NA	NA	NA	NA
WP_013983874.1|3596572_3597031_-	ribosome maturation factor RimP	NA	NA	NA	NA	NA
WP_013983875.1|3597423_3597807_-	preprotein translocase subunit SecG	NA	NA	NA	NA	NA
WP_041771839.1|3597811_3598567_-	triose-phosphate isomerase	NA	NA	NA	NA	NA
WP_013983877.1|3598632_3599970_-	phosphoglucosamine mutase	NA	NA	NA	NA	NA
WP_011914378.1|3599980_3600832_-	dihydropteroate synthase	NA	NA	NA	NA	NA
WP_041771986.1|3601000_3602914_-|protease	ATP-dependent zinc metalloprotease FtsH	protease	I3UL75	Ostreococcus_lucimarinus_virus	48.0	1.1e-114
WP_013983879.1|3603528_3603840_+	YhbY family RNA-binding protein	NA	NA	NA	NA	NA
WP_013983880.1|3603871_3604303_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011914382.1|3604280_3604757_-	transcription elongation factor GreA	NA	NA	NA	NA	NA
WP_013983881.1|3604753_3607975_-	carbamoyl-phosphate synthase large subunit	NA	NA	NA	NA	NA
WP_013983882.1|3608011_3609160_-	glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit	NA	NA	NA	NA	NA
WP_013983883.1|3609376_3610183_-	4-hydroxy-tetrahydrodipicolinate reductase	NA	NA	NA	NA	NA
WP_013983884.1|3610264_3611395_-	molecular chaperone DnaJ	NA	E3T4P7	Cafeteria_roenbergensis_virus	39.9	6.7e-27
WP_013983885.1|3611518_3613432_-	molecular chaperone DnaK	NA	G8DDB7	Micromonas_pusilla_virus	51.3	5.8e-148
WP_011914388.1|3613530_3614100_-	nucleotide exchange factor GrpE	NA	NA	NA	NA	NA
WP_013983886.1|3614301_3615975_+	DNA repair protein RecN	NA	NA	NA	NA	NA
WP_011914390.1|3616037_3616442_-	ferric iron uptake transcriptional regulator	NA	NA	NA	NA	NA
WP_013983887.1|3616537_3617050_+	outer membrane protein assembly factor BamE	NA	NA	NA	NA	NA
WP_011914392.1|3617090_3617405_-	RnfH family protein	NA	NA	NA	NA	NA
WP_011914393.1|3617397_3617832_-	type II toxin-antitoxin system RatA family toxin	NA	NA	NA	NA	NA
WP_011914394.1|3618038_3618521_+	SsrA-binding protein SmpB	NA	W5RAM5	Staphylococcus_phage	46.7	2.6e-28
WP_011914395.1|3618573_3619365_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_013983888.1|3619634_3621329_+	L-lactate permease	NA	NA	NA	NA	NA
WP_013983889.1|3621583_3622405_+	(Fe-S)-binding protein	NA	NA	NA	NA	NA
WP_011914398.1|3622401_3623862_+	iron-sulfur cluster-binding protein	NA	NA	NA	NA	NA
WP_013983890.1|3623858_3624530_+	lactate utilization protein	NA	NA	NA	NA	NA
WP_013983891.1|3624526_3627379_+	FAD-binding oxidoreductase	NA	NA	NA	NA	NA
WP_013983892.1|3627560_3627866_+	hypothetical protein	NA	NA	NA	NA	NA
WP_013983893.1|3628475_3630929_+|integrase	site-specific integrase	integrase	A0A059XK29	uncultured_phage	28.4	2.0e-12
WP_041771841.1|3631085_3632357_+|integrase	tyrosine-type recombinase/integrase	integrase	NA	NA	NA	NA
WP_013981288.1|3632726_3634241_+|transposase	IS21 family transposase	transposase	K4I413	Acidithiobacillus_phage	52.7	1.6e-145
WP_013981287.1|3634258_3635014_+	ATP-binding protein	NA	K4HZD4	Acidithiobacillus_phage	55.1	5.4e-73
WP_013983897.1|3636306_3639408_-	type I restriction endonuclease subunit R	NA	A0A220A398	Liberibacter_phage	26.2	4.8e-67
WP_013983898.1|3639492_3644265_-	DUF3320 domain-containing protein	NA	NA	NA	NA	NA
WP_148263445.1|3644306_3645614_-	McrC family protein	NA	NA	NA	NA	NA
WP_013983900.1|3645610_3647452_-	AAA family ATPase	NA	K4I1H4	Acidithiobacillus_phage	37.4	1.7e-32
WP_004423328.1|3647441_3648782_-	restriction endonuclease subunit S	NA	NA	NA	NA	NA
WP_013983901.1|3648771_3650697_-	SAM-dependent DNA methyltransferase	NA	A0A220A2U5	Liberibacter_phage	31.3	2.1e-49
WP_013983902.1|3651045_3651753_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003459813.1|3651841_3652483_-	hypothetical protein	NA	NA	NA	NA	NA
WP_049790913.1|3652558_3652804_-	hypothetical protein	NA	NA	NA	NA	NA
WP_013981287.1|3653800_3654556_-	ATP-binding protein	NA	K4HZD4	Acidithiobacillus_phage	55.1	5.4e-73
3654557:3654616	attL	GGTGGGATTCCTTGGGGTCAGTGGTAGTAGGCGGGGCCGCGCAGGTTGGCGTGGTCGTCC	NA	NA	NA	NA
WP_013981288.1|3654573_3656088_-|transposase	IS21 family transposase	transposase	K4I413	Acidithiobacillus_phage	52.7	1.6e-145
WP_003459810.1|3656909_3657305_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003459809.1|3657306_3657957_+	hypothetical protein	NA	NA	NA	NA	NA
WP_041771843.1|3658056_3660228_+	ATP-binding protein	NA	A0A1C9EG55	Acidianus_two-tailed_virus	30.6	7.1e-09
WP_080565011.1|3660360_3661389_+	WYL domain-containing protein	NA	NA	NA	NA	NA
WP_148263421.1|3661813_3662440_-	HAD family hydrolase	NA	NA	NA	NA	NA
WP_080564998.1|3662682_3663552_-|integrase	site-specific integrase	integrase	NA	NA	NA	NA
3673437:3675173	attR	GGACGACCACGCCAACCTGCGCGGCCCCGCCTACTACCACTGACCCCAAGGAATCCCACCATGCTGCCCCATCCGACCCTGGACAAGCTCCAGACCCTGCGCCTGACCGGCATGCTCAAGGCACTCGCCGAGCAACTGAAAACCCCCGACATCAACAGCCTGAGCTTCGAGGAACGCCTCGGCCTGTTGGTCGACCGCGAACTGACCGAACGCGACGACAAGCGCCTCAGCAGCCGCCTGCGCCAGGCCCGGCTCAAGCACAACGCCTGCCTCGAAGACATCGACTACCGCAGCCCGCGCGGGCTGGATAAGGCGCTGATCCTGCAACTGAGCGGCGGCCAGTGGCTACGCGACGGCCTCAACCTGATCATCGGCGGCCCCACCGGCGTGGGTAAAACCTGGCTGGCCTGCGCCCTGGCCCACCAGGCCTGCCGAGAGGGTTACAGCGTGCGTTACCTGCGCTTGCCACGCCTGCTGGAAGAGTTGGGCCTAGCCCACGGCGACGGGCGCTTCGCCAAGCTGATGAGCGGCTATGCCAAGACCGACCTGCTGATCCTTGATGACTGGGGTCTGGCCCCGTTCACCGTTGAACAGCGCCGTGACATGCTGGAGCTACTGGACGACCGCTACGGCCAGCGCTCGACCCTCGTGACCAGCCAAATGCCCGTGGACAACTGGCACGAACTGATCGGCGATCCGACCCTGGCCGATGCCATCCTCGACCGCCTGGTGCACAACGCTTATCGGATCAACCTCAAGGGCGAATCGATGCGCAAACAGACGAAGAAATTGACGACACCGGGCACCTCAGACTAACAATGCAACCCCTGCGTCGCTGCGCTCCGACTGCCCGGCCGGATGGCCGTGGAACAGGTGGCCAGATGGCCGTGGAATGCCTGGCCAGATGAGCGTGGACTGGGTGGCCGGATGGTGTGGAATCCGCAGTGAGTCGATGTCCGATGCTCAAAGCAGCACGAATCAGTGGTTCTATGAGGAAAAAGGTGAACGCAAGGGCGGCGCCAGCGAACAGGAGGTGATAGAGCTGATTCGCGCAGGCCGCCTCGGCTATGGTAGCTCCGTGTGGACACATGGCTTTACCGAGTGGACGAAGCTGGAAAACACCCCGCTGCGGCAACACCTGCAGCACACCCCGCCACCGCTGGTTGGCAGCCAGGTGAACAACACCCTAGTCTGGGTGCTCGCCTTCGCGCCCATCATCGGCTACTTGATGGAGTGGTTCGTCGCAGGCGCCATCAATGGTAGCGAGGCAGCAGCAGTACGAGCGATGGAAAACGCCAGTTACTGGTACATCACGCTAGCGTTCAACCTGCTGCTGTCCTTCTTCGACGAGAAGCGCCTGCAAAAGGCCGGGCACAATACCAGCCGCTTCCGAGGCTGGGCCTGGCTGGTGCCGGTGTACCTGTATCAGCGCGCCAAAAACCTACAGCAGAACCTGGCCTACTTCGTTGTCTGGCTGGTGTGTTTTGCGCTGGTTCTTCTGGCCTGACGGAGCCCTCTCATGTTCAAAAATCTTCTTGCTACTGTAGGCCTGGCCGTCGTGCTTAAGGCCGCCTTTGAACACTACCGCGAGTTTCGGGAGTTGAAGCGCGAAAAGCAGGGCCGCAGGGAACCGACCACCTGAATGACCGCGAGCCTGCACCGCTCCACTGGCGGCGGCAGCTAAATGGCAGTGTCGATATTCACAAATAATGACTGGGGTTCATCTGATTGAGATGA	NA	NA	NA	NA
