assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000219215.1_ASM21921v1	NC_015726	Cupriavidus necator N-1 chromosome 1, complete sequence	1	1432689-1432783	1	CRISPRCasFinder	no		cas3,c2c9_V-U4,DinG,csa3,DEDDh,WYL,RT	Orphan	CGCGCCGGTGCCGGCGCTGGCGC	23	0	0	NA	NA	NA	1	1	Orphan	cas3,c2c9_V-U4,DinG,csa3,DEDDh,WYL,RT,cas14j,PD-DExK	NA,NA|64aa|down_4|NC_015726.1_1437517_1437709_+,NA|162aa|down_6|NC_015726.1_1438785_1439271_+	NA|241aa|up_9|NC_015726.1_1422351_1423074_+	cd02136, PnbA_NfnB-like, nitroreductase similar to Mycobacterium smegmatis NfnB	NA|408aa|up_8|NC_015726.1_1423346_1424570_+	PRK11669, pbpG, D-alanyl-D-alanine endopeptidase; Provisional	NA|471aa|up_7|NC_015726.1_1424638_1426051_-	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion]	NA|250aa|up_6|NC_015726.1_1426066_1426816_-	COG2186, FadR, Transcriptional regulators [Transcription]	NA|262aa|up_5|NC_015726.1_1426957_1427743_-	COG1414, IclR, Transcriptional regulator [Transcription]	NA|242aa|up_4|NC_015726.1_1427978_1428704_+	COG0247, GlpC, Fe-S oxidoreductase [Energy production and conversion]	NA|471aa|up_3|NC_015726.1_1428733_1430146_+	COG1139, COG1139, Uncharacterized conserved protein containing a ferredoxin-like domain [Energy production and conversion]	NA|90aa|up_2|NC_015726.1_1430142_1430412_+	TIGR03557, F420_G6P_family, F420-dependent oxidoreductase, G6PDH family	NA|296aa|up_1|NC_015726.1_1430430_1431318_-	cd08415, PBP2_LysR_opines_like, The C-terminal substrate-domain of LysR-type transcriptional regulators involved in the catabolism of opines and that of related regulators, contains the type 2 periplasmic binding fold	NA|334aa|up_0|NC_015726.1_1431469_1432471_+	COG2423, COG2423, Predicted ornithine cyclodeaminase, mu-crystallin homolog [Amino acid transport and metabolism]	NA|349aa|down_0|NC_015726.1_1433360_1434407_+	cd13578, PBP2_Bug27, Aromatic solutes transporter of Bug (Bordetella uptake gene) protein family;  contains the type 2 periplasmic binding fold	NA|265aa|down_1|NC_015726.1_1434471_1435266_-	COG1101, PhnK, ABC-type uncharacterized transport system, ATPase component [General function prediction only]	NA|299aa|down_2|NC_015726.1_1435267_1436164_-	COG4120, COG4120, ABC-type uncharacterized transport system, permease component [General function prediction only]	NA|326aa|down_3|NC_015726.1_1436339_1437317_-	COG2984, COG2984, ABC-type uncharacterized transport system, periplasmic component [General function prediction only]	NA|64aa|down_4|NC_015726.1_1437517_1437709_+	NA	NA|273aa|down_5|NC_015726.1_1437955_1438774_+	pfam09865, DUF2092, Predicted periplasmic protein (DUF2092)	NA|162aa|down_6|NC_015726.1_1438785_1439271_+	NA	NA|345aa|down_7|NC_015726.1_1439324_1440359_-	PRK05286, PRK05286, quinone-dependent dihydroorotate dehydrogenase	NA|263aa|down_8|NC_015726.1_1440447_1441236_-	PRK01305, PRK01305, arginyl-tRNA-protein transferase; Provisional	NA|251aa|down_9|NC_015726.1_1441304_1442057_-	PRK00301, aat, leucyl/phenylalanyl-tRNA--protein transferase; Reviewed
GCF_000219215.1_ASM21921v1	NC_015726	Cupriavidus necator N-1 chromosome 1, complete sequence	2	3301504-3301612	2	CRISPRCasFinder	no		cas3,c2c9_V-U4,DinG,csa3,DEDDh,WYL,RT	Orphan	GTAGCCGCCGCGCTCTTCGGCCAGC	25	0	0	NA	NA	NA	1	1	Orphan	cas3,c2c9_V-U4,DinG,csa3,DEDDh,WYL,RT,cas14j,PD-DExK	NA|275aa|up_9|NC_015726.1_3286463_3287288_-,NA|208aa|up_2|NC_015726.1_3296628_3297252_-,NA|281aa|up_1|NC_015726.1_3297518_3298361_+,NA|102aa|down_3|NC_015726.1_3308592_3308898_-,NA|137aa|down_9|NC_015726.1_3313555_3313966_-	NA|275aa|up_9|NC_015726.1_3286463_3287288_-	NA	NA|348aa|up_8|NC_015726.1_3287906_3288950_+	cd01847, Triacylglycerol_lipase_like, Triacylglycerol lipase-like subfamily of the SGNH hydrolases, a diverse family of lipases and esterases	NA|299aa|up_7|NC_015726.1_3290054_3290951_-	cd00950, DHDPS, Dihydrodipicolinate synthase (DHDPS)	NA|325aa|up_6|NC_015726.1_3291269_3292244_-	PRK11139, PRK11139, DNA-binding transcriptional activator GcvA; Provisional	NA|447aa|up_5|NC_015726.1_3292342_3293683_+	PRK02991, PRK02991, D-serine dehydratase; Provisional	NA|404aa|up_4|NC_015726.1_3293824_3295036_+	cd17319, MFS_ExuT_GudP_like, Hexuronate transporter, Glucarate transporter, and similar transporters of the Major Facilitator Superfamily	NA|508aa|up_3|NC_015726.1_3295070_3296594_+	COG5476, COG5476, Uncharacterized conserved protein [Function unknown]	NA|208aa|up_2|NC_015726.1_3296628_3297252_-	NA	NA|281aa|up_1|NC_015726.1_3297518_3298361_+	NA	NA|395aa|up_0|NC_015726.1_3299478_3300663_-	PRK07209, PRK07209, ribonucleotide-diphosphate reductase subunit beta; Validated	NA|206aa|down_0|NC_015726.1_3304228_3304846_-	PRK11789, PRK11789, 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD	NA|541aa|down_1|NC_015726.1_3304842_3306465_-	COG2204, AtoC, Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]	NA|702aa|down_2|NC_015726.1_3306490_3308596_-	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|102aa|down_3|NC_015726.1_3308592_3308898_-	NA	NA|313aa|down_4|NC_015726.1_3308904_3309843_-	COG4137, COG4137, ABC-type uncharacterized transport system, permease component [General function prediction only]	NA|465aa|down_5|NC_015726.1_3309975_3311370_+	PRK10867, PRK10867, signal recognition particle protein; Provisional	NA|181aa|down_6|NC_015726.1_3311424_3311967_+	PRK09162, PRK09162, hypoxanthine-guanine phosphoribosyltransferase; Provisional	NA|205aa|down_7|NC_015726.1_3312014_3312629_-	COG1280, RhtB, Putative threonine efflux protein [Amino acid transport and metabolism]	NA|143aa|down_8|NC_015726.1_3312735_3313164_-	COG2165, PulG, Type II secretory pathway, pseudopilin PulG [Cell motility and secretion / Intracellular trafficking and secretion]	NA|137aa|down_9|NC_015726.1_3313555_3313966_-	NA
GCF_000219215.1_ASM21921v1	NC_015723	Cupriavidus necator N-1 chromosome 2, complete sequence	1	2683665-2683810	1	CRISPRCasFinder	no		DEDDh,c2c9_V-U4,csa3,DinG,RT,cas14j	Orphan	CGCAGAAACAGGTACGCTTCGCC	23	0	0	NA	NA	NA	2	2	Orphan	cas3,c2c9_V-U4,DinG,csa3,DEDDh,WYL,RT,cas14j,PD-DExK	NA|68aa|up_6|NC_015723.1_2676086_2676290_+,NA|130aa|up_5|NC_015723.1_2676435_2676825_+,NA|157aa|up_3|NC_015723.1_2678448_2678919_-,NA	NA|723aa|up_9|NC_015723.1_2670277_2672446_+	COG4772, FecA, Outer membrane receptor for Fe3+-dicitrate [Inorganic ion transport and metabolism]	NA|534aa|up_8|NC_015723.1_2672531_2674133_-	PRK00741, prfC, peptide chain release factor 3; Provisional	NA|358aa|up_7|NC_015723.1_2674306_2675380_-	COG1295, Rbn, Ribonuclease BN family enzyme [Replication, recombination, and repair]	NA|68aa|up_6|NC_015723.1_2676086_2676290_+	NA	NA|130aa|up_5|NC_015723.1_2676435_2676825_+	NA	NA|456aa|up_4|NC_015723.1_2676955_2678323_-	COG2204, AtoC, Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]	NA|157aa|up_3|NC_015723.1_2678448_2678919_-	NA	NA|432aa|up_2|NC_015723.1_2679631_2680927_-	COG2252, COG2252, Xanthine/uracil/vitamin C permease [Nucleotide transport and    metabolism]	NA|68aa|up_1|NC_015723.1_2681427_2681631_+	COG1278, CspC, Cold shock proteins [Transcription]	NA|439aa|up_0|NC_015723.1_2681775_2683092_+	pfam13006, Nterm_IS4, Insertion element 4 transposase N-terminal	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA
GCF_000219215.1_ASM21921v1	NC_015723	Cupriavidus necator N-1 chromosome 2, complete sequence	2	2683921-2684101	2	CRISPRCasFinder	no		DEDDh,c2c9_V-U4,csa3,DinG,RT,cas14j	Orphan	CGCAGAAACAGGTACGCTTCGCC	23	0	0	NA	NA	NA	3	3	Orphan	cas3,c2c9_V-U4,DinG,csa3,DEDDh,WYL,RT,cas14j,PD-DExK	NA|68aa|up_6|NC_015723.1_2676086_2676290_+,NA|130aa|up_5|NC_015723.1_2676435_2676825_+,NA|157aa|up_3|NC_015723.1_2678448_2678919_-,NA	NA|723aa|up_9|NC_015723.1_2670277_2672446_+	COG4772, FecA, Outer membrane receptor for Fe3+-dicitrate [Inorganic ion transport and metabolism]	NA|534aa|up_8|NC_015723.1_2672531_2674133_-	PRK00741, prfC, peptide chain release factor 3; Provisional	NA|358aa|up_7|NC_015723.1_2674306_2675380_-	COG1295, Rbn, Ribonuclease BN family enzyme [Replication, recombination, and repair]	NA|68aa|up_6|NC_015723.1_2676086_2676290_+	NA	NA|130aa|up_5|NC_015723.1_2676435_2676825_+	NA	NA|456aa|up_4|NC_015723.1_2676955_2678323_-	COG2204, AtoC, Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]	NA|157aa|up_3|NC_015723.1_2678448_2678919_-	NA	NA|432aa|up_2|NC_015723.1_2679631_2680927_-	COG2252, COG2252, Xanthine/uracil/vitamin C permease [Nucleotide transport and    metabolism]	NA|68aa|up_1|NC_015723.1_2681427_2681631_+	COG1278, CspC, Cold shock proteins [Transcription]	NA|439aa|up_0|NC_015723.1_2681775_2683092_+	pfam13006, Nterm_IS4, Insertion element 4 transposase N-terminal	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA
GCF_000219215.1_ASM21921v1	NC_015723	Cupriavidus necator N-1 chromosome 2, complete sequence	3	2684259-2684415	3	CRISPRCasFinder	no		DEDDh,c2c9_V-U4,csa3,DinG,RT,cas14j	Orphan	CGCAGAAACAGGTACGCTTCGCC	23	0	0	NA	NA	NA	2	2	Orphan	cas3,c2c9_V-U4,DinG,csa3,DEDDh,WYL,RT,cas14j,PD-DExK	NA|68aa|up_6|NC_015723.1_2676086_2676290_+,NA|130aa|up_5|NC_015723.1_2676435_2676825_+,NA|157aa|up_3|NC_015723.1_2678448_2678919_-,NA	NA|723aa|up_9|NC_015723.1_2670277_2672446_+	COG4772, FecA, Outer membrane receptor for Fe3+-dicitrate [Inorganic ion transport and metabolism]	NA|534aa|up_8|NC_015723.1_2672531_2674133_-	PRK00741, prfC, peptide chain release factor 3; Provisional	NA|358aa|up_7|NC_015723.1_2674306_2675380_-	COG1295, Rbn, Ribonuclease BN family enzyme [Replication, recombination, and repair]	NA|68aa|up_6|NC_015723.1_2676086_2676290_+	NA	NA|130aa|up_5|NC_015723.1_2676435_2676825_+	NA	NA|456aa|up_4|NC_015723.1_2676955_2678323_-	COG2204, AtoC, Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]	NA|157aa|up_3|NC_015723.1_2678448_2678919_-	NA	NA|432aa|up_2|NC_015723.1_2679631_2680927_-	COG2252, COG2252, Xanthine/uracil/vitamin C permease [Nucleotide transport and    metabolism]	NA|68aa|up_1|NC_015723.1_2681427_2681631_+	COG1278, CspC, Cold shock proteins [Transcription]	NA|439aa|up_0|NC_015723.1_2681775_2683092_+	pfam13006, Nterm_IS4, Insertion element 4 transposase N-terminal	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA
