assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000218875.1_ASM21887v1	NC_015709	Zymomonas mobilis subsp. pomaceae ATCC 29192, complete sequence	1	1183182-1183269	1	CRISPRCasFinder	no	cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3	DinG,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,DEDDh,csa3	Type I-E	GTTCATCCCCGCGTGGGCGGGGAACAC	27	0	0	NA	NA	I-E	1	1	TypeI-E	DinG,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,DEDDh,csa3,cas4,cas8c,RT	NA,NA|107aa|down_2|NC_015709.1_1184774_1185095_-	NA|305aa|up_9|NC_015709.1_1165458_1166373_-	PRK09250, PRK09250, class I fructose-bisphosphate aldolase	NA|398aa|up_8|NC_015709.1_1166821_1168015_-	PRK00073, pgk, phosphoglycerate kinase; Provisional	NA|338aa|up_7|NC_015709.1_1168267_1169281_-	COG0057, GapA, Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase [Carbohydrate transport and metabolism]	NA|664aa|up_6|NC_015709.1_1169327_1171319_-	COG0021, TktA, Transketolase [Carbohydrate transport and metabolism]	NA|134aa|up_5|NC_015709.1_1172025_1172427_+	pfam05164, ZapA, Cell division protein ZapA	NA|608aa|up_4|NC_015709.1_1174267_1176091_-	PRK09284, PRK09284, thiamine biosynthesis protein ThiC; Provisional	NA|800aa|up_3|NC_015709.1_1176506_1178906_+	cd01347, ligand_gated_channel, TonB dependent/Ligand-Gated channels are created by a monomeric 22 strand (22,24) anti-parallel beta-barrel	NA|375aa|up_2|NC_015709.1_1178930_1180055_+	cd08602, GDPD_ScGlpQ1_like, Glycerophosphodiester phosphodiesterase domain of Streptomycin coelicolor (GlpQ1) and similar proteins	NA|305aa|up_1|NC_015709.1_1180160_1181075_-	cd08453, PBP2_IlvR, The C-terminal substrate binding domain of LysR-type transcriptional regulator, IlvR, involved in the biosynthesis of isoleucine, leucine and valine; contains type 2 periplasmic binding fold	NA|617aa|up_0|NC_015709.1_1181176_1183027_+	PRK12448, PRK12448, dihydroxy-acid dehydratase; Provisional	NA|176aa|down_0|NC_015709.1_1183282_1183810_+	pfam06995, Phage_P2_GpU, Phage P2 GpU	NA|240aa|down_1|NC_015709.1_1183806_1184526_+	PHA02561, D, tail protein; Provisional	NA|107aa|down_2|NC_015709.1_1184774_1185095_-	NA	NA|110aa|down_3|NC_015709.1_1185157_1185487_-	COG3093, VapI, Plasmid maintenance system antidote protein [General function prediction only]	NA|101aa|down_4|NC_015709.1_1185513_1185816_-	pfam05015, HigB-like_toxin, RelE-like toxin of type II toxin-antitoxin system HigB	NA|248aa|down_5|NC_015709.1_1186026_1186770_+	cd01130, VirB11-like_ATPase, Type IV secretory pathway component VirB11, and related ATPases	NA|317aa|down_6|NC_015709.1_1186797_1187748_+	pfam13304, AAA_21, AAA domain, putative AbiEii toxin, Type IV TA system	cas2|103aa|down_7|NC_015709.1_1189114_1189423_-	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	cas1|314aa|down_8|NC_015709.1_1189403_1190345_-	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas6e|245aa|down_9|NC_015709.1_1190348_1191083_-	smart01101, CRISPR_assoc, This domain forms an anti-parallel beta strand structure with flanking alpha helical regions
GCF_000218875.1_ASM21887v1	NC_015709	Zymomonas mobilis subsp. pomaceae ATCC 29192, complete sequence	2	1188329-1189028	2,1,1	CRISPRCasFinder,CRT,PILER-CR	no	cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3	DinG,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,DEDDh,csa3	Type I-E	CGGTTCATCCCCGCGTGGGCGGGGAACAC,CGGTTCATCCCCGCGTGGGCGGGGAACAC,CGGTTCATCCCCGCGTGGGCGGGGAACAC	29,29,29	0	0	NA	NA	I-E:I-E:I-E	11,11,11	11	TypeI-E	DinG,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,DEDDh,csa3,cas4,cas8c,RT	NA|107aa|up_4|NC_015709.1_1184774_1185095_-,NA	NA|375aa|up_9|NC_015709.1_1178930_1180055_+	cd08602, GDPD_ScGlpQ1_like, Glycerophosphodiester phosphodiesterase domain of Streptomycin coelicolor (GlpQ1) and similar proteins	NA|305aa|up_8|NC_015709.1_1180160_1181075_-	cd08453, PBP2_IlvR, The C-terminal substrate binding domain of LysR-type transcriptional regulator, IlvR, involved in the biosynthesis of isoleucine, leucine and valine; contains type 2 periplasmic binding fold	NA|617aa|up_7|NC_015709.1_1181176_1183027_+	PRK12448, PRK12448, dihydroxy-acid dehydratase; Provisional	NA|176aa|up_6|NC_015709.1_1183282_1183810_+	pfam06995, Phage_P2_GpU, Phage P2 GpU	NA|240aa|up_5|NC_015709.1_1183806_1184526_+	PHA02561, D, tail protein; Provisional	NA|107aa|up_4|NC_015709.1_1184774_1185095_-	NA	NA|110aa|up_3|NC_015709.1_1185157_1185487_-	COG3093, VapI, Plasmid maintenance system antidote protein [General function prediction only]	NA|101aa|up_2|NC_015709.1_1185513_1185816_-	pfam05015, HigB-like_toxin, RelE-like toxin of type II toxin-antitoxin system HigB	NA|248aa|up_1|NC_015709.1_1186026_1186770_+	cd01130, VirB11-like_ATPase, Type IV secretory pathway component VirB11, and related ATPases	NA|317aa|up_0|NC_015709.1_1186797_1187748_+	pfam13304, AAA_21, AAA domain, putative AbiEii toxin, Type IV TA system	cas2|103aa|down_0|NC_015709.1_1189114_1189423_-	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	cas1|314aa|down_1|NC_015709.1_1189403_1190345_-	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas6e|245aa|down_2|NC_015709.1_1190348_1191083_-	smart01101, CRISPR_assoc, This domain forms an anti-parallel beta strand structure with flanking alpha helical regions	cas5|269aa|down_3|NC_015709.1_1191079_1191886_-	TIGR01868, hypothetical_protein, CRISPR-associated protein Cas5/CasD, subtype I-E/ECOLI	cas7|359aa|down_4|NC_015709.1_1191889_1192966_-	pfam09344, Cas_CT1975, CT1975-like protein	cse2gr11|210aa|down_5|NC_015709.1_1193010_1193640_-	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2	cas8e|543aa|down_6|NC_015709.1_1193636_1195265_-	cd09729, Cse1_I-E, CRISPR/Cas system-associated protein Cse1	cas3|896aa|down_7|NC_015709.1_1195893_1198581_-	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3	NA|218aa|down_8|NC_015709.1_1199107_1199761_+	COG1636, COG1636, Uncharacterized protein conserved in bacteria [Function unknown]	NA|238aa|down_9|NC_015709.1_1200179_1200893_-	COG1794, RacX, Aspartate racemase [Cell envelope biogenesis, outer membrane]
GCF_000218875.1_ASM21887v1	NC_015709	Zymomonas mobilis subsp. pomaceae ATCC 29192, complete sequence	3	1310992-1312057	3,2,2	CRISPRCasFinder,PILER-CR,CRT	no		DinG,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,DEDDh,csa3	Orphan	CGGTTCATCCCCGCGTGGGCGGGGAACAC,CGGTTCATCCCCGCGTGGGCGGGGAACAC,CGGTTCATCCCCGCGTGGGCGGGGAACAC	29,29,29	0	0	NA	NA	I-E:I-E:I-E	17,16,16	17	Orphan	DinG,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,DEDDh,csa3,cas4,cas8c,RT	NA|90aa|up_7|NC_015709.1_1300757_1301027_-,NA|64aa|up_1|NC_015709.1_1309354_1309546_+,NA|263aa|down_6|NC_015709.1_1322306_1323095_-,NA|121aa|down_8|NC_015709.1_1326041_1326404_+	NA|290aa|up_9|NC_015709.1_1297498_1298368_-	COG1352, CheR, Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]	NA|793aa|up_8|NC_015709.1_1298364_1300743_-	COG0643, CheA, Chemotaxis protein histidine kinase and related kinases [Cell motility and secretion / Signal transduction mechanisms]	NA|90aa|up_7|NC_015709.1_1300757_1301027_-	NA	NA|442aa|up_6|NC_015709.1_1301197_1302523_-	smart00283, MA, Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer)	NA|705aa|up_5|NC_015709.1_1303015_1305130_-	COG0317, SpoT, Guanosine polyphosphate pyrophosphohydrolases/synthetases [Signal transduction mechanisms / Transcription]	NA|266aa|up_4|NC_015709.1_1305569_1306367_-	cd05233, SDR_c, classical (c) SDRs	NA|328aa|up_3|NC_015709.1_1306842_1307826_+	cd19081, AKR_AKR9C1, AKR9C family of aldo-keto reductase (AKR)	NA|380aa|up_2|NC_015709.1_1308171_1309311_+	pfam04188, Mannosyl_trans2, Mannosyltransferase (PIG-V)	NA|64aa|up_1|NC_015709.1_1309354_1309546_+	NA	NA|109aa|up_0|NC_015709.1_1309694_1310021_+	COG2076, EmrE, Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism]	NA|193aa|down_0|NC_015709.1_1312200_1312779_-	PRK01641, leuD, 3-isopropylmalate dehydratase small subunit	NA|488aa|down_1|NC_015709.1_1312775_1314239_-	PRK05478, PRK05478, 3-isopropylmalate dehydratase large subunit	NA|423aa|down_2|NC_015709.1_1316130_1317399_-	PRK06814, PRK06814, acyl-[ACP]--phospholipid O-acyltransferase	NA|184aa|down_3|NC_015709.1_1317726_1318278_+	TIGR00560, pgsA, CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA|715aa|down_4|NC_015709.1_1318526_1320671_+	COG4774, Fiu, Outer membrane receptor for monomeric catechols [Inorganic ion transport and metabolism]	NA|335aa|down_5|NC_015709.1_1321109_1322114_-	PLN02389, PLN02389, biotin synthase	NA|263aa|down_6|NC_015709.1_1322306_1323095_-	NA	NA|603aa|down_7|NC_015709.1_1324047_1325856_-	PRK11147, PRK11147, ABC transporter ATPase component; Reviewed	NA|121aa|down_8|NC_015709.1_1326041_1326404_+	NA	NA|466aa|down_9|NC_015709.1_1326604_1328002_+	COG0147, TrpE, Anthranilate/para-aminobenzoate synthases component I [Amino acid transport and metabolism / Coenzyme metabolism]
GCF_000218875.1_ASM21887v1	NC_015715	Zymomonas mobilis subsp. pomaceae ATCC 29192 plasmid pZYMOP01, complete sequence	1	11752-12839	1,1,1	PILER-CR,CRISPRCasFinder,CRT	no	cas2,cas1,cas4,cas7,cas8c,cas5,cas3	cas2,cas1,cas4,cas7,cas8c,cas5,cas3	Type I-C,Type I-U, Type I-U?	GTTTCAATCCACGCCTCCGCGAAGGAGGCGAC,GTTTCAATCCACGCCTCCGCGAAGGAGGCGAC,NNNNCNNNATNNNNGTTTCAATCCACGCCTCCGCGAAGGAGGCGAC	32,32,46	0	0	NA	NA	I-C:I-C:I-C	16,16,16	16	TypeI-C,TypeI-U,TypeI-U?	DinG,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,DEDDh,csa3,cas4,cas8c,RT	NA|676aa|up_4|NC_015715.1_7634_9662_-,NA|111aa|up_2|NC_015715.1_10483_10816_-,NA|92aa|up_1|NC_015715.1_10779_11055_-,NA|80aa|up_0|NC_015715.1_11080_11320_-,NA	NA|110aa|up_9|NC_015715.1_1754_2084_-	pfam15738, YafQ_toxin, Bacterial toxin of type II toxin-antitoxin system, YafQ	NA|93aa|up_8|NC_015715.1_2058_2337_-	TIGR02384, Putative_antitoxin_RelB, addiction module antitoxin, RelB/DinJ family	NA|1035aa|up_7|NC_015715.1_2401_5506_-	cd17919, DEXHc_Snf, DEXH/Q-box helicase domain of DEAD-like helicase Snf family proteins	NA|434aa|up_6|NC_015715.1_5515_6817_-	pfam15611, EH_Signature, EH_Signature domain	NA|274aa|up_5|NC_015715.1_6813_7635_-	cd07185, OmpA_C-like, Peptidoglycan binding domains similar to the C-terminal domain of outer-membrane protein OmpA	NA|676aa|up_4|NC_015715.1_7634_9662_-	NA	NA|151aa|up_3|NC_015715.1_10003_10456_-	smart00974, T5orf172, This entry represents the putative helicase A859L	NA|111aa|up_2|NC_015715.1_10483_10816_-	NA	NA|92aa|up_1|NC_015715.1_10779_11055_-	NA	NA|80aa|up_0|NC_015715.1_11080_11320_-	NA	cas2|97aa|down_0|NC_015715.1_13049_13340_-	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	cas1|345aa|down_1|NC_015715.1_13349_14384_-	TIGR03640, cas1_DVULG, CRISPR-associated endonuclease Cas1, subtype I-C/DVULG	cas4|224aa|down_2|NC_015715.1_14380_15052_-	TIGR00372, conserved_hypothetical_protein, CRISPR-associated protein Cas4	cas7|317aa|down_3|NC_015715.1_15055_16006_-	pfam05107, Cas_Cas7, CRISPR-associated protein Cas7	cas8c|584aa|down_4|NC_015715.1_16011_17763_-	pfam09709, Cas_Csd1, CRISPR-associated protein (Cas_Csd1)	cas5|223aa|down_5|NC_015715.1_17759_18428_-	cd09752, Cas5_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas3|747aa|down_6|NC_015715.1_18498_20739_-	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	NA|253aa|down_7|NC_015715.1_24175_24934_-	COG2207, AraC, AraC-type DNA-binding domain-containing proteins [Transcription]	NA|102aa|down_8|NC_015715.1_25268_25574_-	COG2944, COG2944, Predicted transcriptional regulator [Transcription]	NA|111aa|down_9|NC_015715.1_25597_25930_-	pfam06296, RelE, RelE toxin of RelE / RelB toxin-antitoxin system
