The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NC_017325	Sinorhizobium meliloti SM11, complete sequence	3908022	880662	937256	3908022	transposase,tRNA,tail,head,portal	Vibrio_phage(10.0%)	59	NA	NA
WP_010969865.1|880662_881004_+|tRNA	tRNA-binding protein	tRNA	NA	NA	NA	NA
WP_003532899.1|881016_882399_-	HAMP domain-containing protein	NA	A0A1V0SGX0	Hokovirus	22.9	8.8e-05
WP_003532900.1|882433_883138_-	response regulator transcription factor	NA	W8CYM9	Bacillus_phage	38.2	3.4e-37
WP_017263267.1|883438_883954_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010969864.1|884107_884374_-	hypothetical protein	NA	NA	NA	NA	NA
WP_013844741.1|884699_885329_-	DUF1236 domain-containing protein	NA	NA	NA	NA	NA
WP_003532904.1|885549_885705_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003532905.1|885814_886456_+	MBL fold metallo-hydrolase	NA	A0A1X9I5D3	Streptococcus_phage	30.5	7.2e-18
WP_003532907.1|886526_886952_-	BA14K family protein	NA	NA	NA	NA	NA
WP_003532915.1|887095_887311_-	cold-shock protein	NA	A0A1W6JNX5	Morganella_phage	50.0	9.1e-10
WP_010969863.1|887980_888883_-	DMT family transporter	NA	NA	NA	NA	NA
WP_010969862.1|889071_890262_-	PQQ-dependent sugar dehydrogenase	NA	NA	NA	NA	NA
WP_003532922.1|890387_890669_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003532924.1|890661_890859_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010969860.1|891256_892459_+	pyridoxal phosphate-dependent aminotransferase	NA	NA	NA	NA	NA
WP_013844739.1|892579_893446_-	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_014529157.1|893470_894232_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003532933.1|894344_895235_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010969856.1|895273_896479_-	glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit	NA	R4TGJ8	Halovirus	32.9	6.7e-41
WP_003532937.1|896804_897254_+	GatB/YqeY domain-containing protein	NA	A0A292GL36	Xanthomonas_phage	38.4	3.0e-15
WP_010969855.1|897487_899491_+	DNA primase	NA	A0A0K1LMQ9	Caulobacter_phage	41.5	3.5e-87
WP_010969854.1|899536_901447_+	DNA helicase RecQ	NA	A0A1V0SBK0	Catovirus	35.7	1.1e-74
WP_010969853.1|901706_902894_+	glycine C-acetyltransferase	NA	D2TEZ5	Emiliania_huxleyi_virus	27.8	9.2e-35
WP_013844736.1|902916_903951_+	L-threonine 3-dehydrogenase	NA	R9TPW0	Vibrio_phage	68.6	4.1e-15
WP_003532953.1|904383_906438_+	RNA polymerase sigma factor RpoD	NA	A0A2I7SAT0	Vibrio_phage	33.6	1.1e-35
WP_003532955.1|906659_906950_+	GYD domain-containing protein	NA	NA	NA	NA	NA
WP_003537532.1|907318_907888_+	transglycosylase SLT domain-containing protein	NA	NA	NA	NA	NA
WP_003537534.1|907989_908343_+	DUF1428 domain-containing protein	NA	NA	NA	NA	NA
WP_010969728.1|908697_909774_+|transposase	ISAs1-like element ISRm21 family transposase	transposase	NA	NA	NA	NA
WP_003537547.1|910163_910568_+	nuclear transport factor 2 family protein	NA	NA	NA	NA	NA
WP_003537549.1|910824_911181_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003537551.1|911268_912057_-	SIMPL domain-containing protein	NA	NA	NA	NA	NA
WP_014529161.1|912389_912809_-	hypothetical protein	NA	NA	NA	NA	NA
WP_017271689.1|913650_913881_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014529163.1|913877_914144_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014529164.1|914162_915731_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014529165.1|915741_916239_-	hypothetical protein	NA	Q8W6L2	Sinorhizobium_phage	45.5	1.8e-29
WP_014529166.1|916238_917393_-	hypothetical protein	NA	A0A1Y0SVH2	Sinorhizobium_phage	57.9	1.6e-31
WP_014529167.1|917407_920581_-	host specificity protein J	NA	Q3HQU5	Burkholderia_phage	37.2	6.7e-133
WP_014529168.1|920577_921315_-|tail	tail assembly protein	tail	A0A1B1IV58	uncultured_Mediterranean_phage	25.9	4.1e-09
WP_017271691.1|921311_922064_-	C40 family peptidase	NA	F1C573	Cronobacter_phage	34.5	8.1e-29
WP_014529170.1|922069_922765_-|tail	phage minor tail protein L	tail	Q6JIL5	Burkholderia_virus	42.3	2.4e-43
WP_014529171.1|922761_923145_-|tail	phage tail protein	tail	K7P7R1	Enterobacteria_phage	31.3	4.4e-07
WP_014529172.1|923144_925334_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014529173.1|925343_925790_-	phage protein, HK97 gp10 family	NA	NA	NA	NA	NA
WP_020479474.1|925789_925996_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014529174.1|925949_926402_-	hypothetical protein	NA	NA	NA	NA	NA
WP_017271694.1|926411_927071_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014529176.1|927365_929159_+	AAA family ATPase	NA	NA	NA	NA	NA
WP_014529177.1|929172_930996_+	ATP-dependent helicase	NA	NA	NA	NA	NA
WP_017271695.1|931019_931406_-	hypothetical protein	NA	NA	NA	NA	NA
WP_017271696.1|931402_931579_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014529179.1|931607_931994_-	hypothetical protein	NA	NA	NA	NA	NA
WP_017271698.1|931990_932329_-|head,tail	head-tail adaptor protein	head,tail	NA	NA	NA	NA
WP_017271699.1|932325_933045_-	glycoside hydrolase family 25 protein	NA	I3VYU7	Thermoanaerobacterium_phage	27.5	1.1e-06
WP_014529181.1|933026_933578_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014529182.1|933581_934700_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014529183.1|934696_935860_-	collagen-like protein	NA	NA	NA	NA	NA
WP_014529184.1|935837_937256_-|portal	phage portal protein	portal	A0A2H4JFN7	uncultured_Caudovirales_phage	23.6	4.5e-12
>prophage 2
NC_017325	Sinorhizobium meliloti SM11, complete sequence	3908022	1066887	1124668	3908022	integrase,terminase,transposase,capsid,protease,tail,head,portal	Paracoccus_phage(29.41%)	65	1069971:1069985	1086311:1086325
WP_014529253.1|1066887_1068063_+|transposase	IS256 family transposase	transposase	A0A0K2CZ57	Paenibacillus_phage	41.2	5.6e-77
WP_013844649.1|1068216_1070427_-	TonB-dependent siderophore receptor	NA	NA	NA	NA	NA
1069971:1069985	attL	TGCCGAAGCCGAAGC	NA	NA	NA	NA
WP_010969781.1|1070578_1071463_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_013844648.1|1071688_1072162_-	6,7-dimethyl-8-ribityllumazine synthase	NA	NA	NA	NA	NA
WP_010969779.1|1072531_1073593_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	34.8	1.4e-29
WP_010969778.1|1073597_1074386_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_003529194.1|1074382_1075264_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_003529193.1|1075341_1076445_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003529191.1|1076630_1077509_-	MurR/RpiR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010969776.1|1077679_1078453_+	N-formylglutamate amidohydrolase	NA	NA	NA	NA	NA
WP_003529187.1|1078561_1080109_+	amino acid permease	NA	NA	NA	NA	NA
WP_010969775.1|1080201_1081566_+	glutamine synthetase	NA	NA	NA	NA	NA
WP_010969774.1|1081763_1083149_+	aldehyde dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010969773.1|1083145_1084291_+	iron-containing alcohol dehydrogenase	NA	NA	NA	NA	NA
WP_017266410.1|1084495_1085659_-|integrase	site-specific integrase	integrase	NA	NA	NA	NA
WP_014529256.1|1085642_1085879_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014529257.1|1085865_1086129_-	BrnT family toxin	NA	K4NX81	Burkholderia_phage	34.1	2.8e-05
WP_014529258.1|1086194_1086443_-	hypothetical protein	NA	A0A291AUJ1	Sinorhizobium_phage	57.8	9.2e-14
1086311:1086325	attR	GCTTCGGCTTCGGCA	NA	NA	NA	NA
WP_014529259.1|1086439_1086637_-	hypothetical protein	NA	NA	NA	NA	NA
WP_017272640.1|1086633_1086903_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014529261.1|1086877_1087669_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014529262.1|1087665_1087836_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014529263.1|1087832_1088345_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014529264.1|1088408_1089359_-	recombinase RecT	NA	A0A0H5BBT9	Pseudomonas_phage	44.8	5.4e-38
WP_014529265.1|1089355_1090357_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014529266.1|1090540_1090984_-	hypothetical protein	NA	NA	NA	NA	NA
WP_017272641.1|1091000_1091468_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_014529268.1|1091599_1091848_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_014529269.1|1091985_1092570_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014529270.1|1092582_1093029_+	global cell cycle regulator GcrA	NA	NA	NA	NA	NA
WP_014529271.1|1093021_1093576_+	hypothetical protein	NA	A0A2D2W1W1	Sinorhizobium_phage	46.0	1.0e-36
WP_014529272.1|1093572_1094238_+	hypothetical protein	NA	NA	NA	NA	NA
WP_017272643.1|1094260_1094611_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014529274.1|1094613_1095198_+	hypothetical protein	NA	NA	NA	NA	NA
WP_017272644.1|1095194_1095755_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014529276.1|1097046_1097631_+	hypothetical protein	NA	NA	NA	NA	NA
WP_020479366.1|1097768_1098023_+	hypothetical protein	NA	NA	NA	NA	NA
WP_017266952.1|1098278_1098446_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014529278.1|1098575_1100396_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014529279.1|1100783_1101761_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014529280.1|1101837_1102713_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014529281.1|1103162_1103339_+	hypothetical protein	NA	NA	NA	NA	NA
WP_017266399.1|1104398_1104656_+	helix-turn-helix transcriptional regulator	NA	J7FAF1	Agrobacterium_phage	50.0	1.5e-11
WP_014529284.1|1104907_1105420_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014529285.1|1105457_1106597_+	TlpA family protein disulfide reductase	NA	NA	NA	NA	NA
WP_017265736.1|1107739_1108369_-	hypothetical protein	NA	NA	NA	NA	NA
WP_017265737.1|1108365_1108830_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014529287.1|1109153_1109537_-	DUF3085 domain-containing protein	NA	NA	NA	NA	NA
WP_017272372.1|1110097_1110439_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014529290.1|1110435_1112124_+|terminase	terminase large subunit	terminase	Q3HQS7	Burkholderia_phage	45.6	2.3e-132
WP_014529291.1|1112120_1113368_+|portal	phage portal protein	portal	A0A0U2BXP2	Paracoccus_phage	59.5	5.9e-125
WP_014529292.1|1113364_1114060_+|head,protease	HK97 family phage prohead protease	head,protease	A0A0U2BX10	Paracoccus_phage	50.2	9.4e-56
WP_014529293.1|1114090_1115296_+|capsid	phage major capsid protein	capsid	A0A0U2C0U7	Paracoccus_phage	64.1	2.2e-129
WP_014529294.1|1115353_1115749_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014529295.1|1115751_1116333_+	hypothetical protein	NA	NA	NA	NA	NA
WP_020479543.1|1116332_1116668_+|head	phage head closure protein	head	NA	NA	NA	NA
WP_014529297.1|1116667_1117144_+	HK97 gp10 family phage protein	NA	A0A0U2C0P4	Paracoccus_phage	45.1	3.1e-26
WP_014529298.1|1117151_1117535_+	hypothetical protein	NA	NA	NA	NA	NA
WP_013844689.1|1117557_1117989_+|tail	tail protein	tail	NA	NA	NA	NA
WP_013844688.1|1117991_1118357_+	gene transfer agent family protein	NA	NA	NA	NA	NA
WP_014529299.1|1118651_1120586_+|tail	phage tail tape measure protein	tail	A0A0U2BXT9	Paracoccus_phage	51.6	2.6e-55
WP_014529300.1|1120588_1121269_+	hypothetical protein	NA	A0A141GEX3	Brucella_phage	47.6	9.2e-48
WP_014529301.1|1121268_1121862_+	hypothetical protein	NA	A0A141GEX4	Brucella_phage	59.0	7.7e-67
WP_014529302.1|1121861_1122260_+	hypothetical protein	NA	A0A141GEY4	Brucella_phage	47.3	3.2e-32
WP_014529303.1|1122244_1124668_+	hypothetical protein	NA	A0A141GEY5	Brucella_phage	60.5	2.7e-190
>prophage 3
NC_017325	Sinorhizobium meliloti SM11, complete sequence	3908022	1453812	1501326	3908022	capsid,tail,integrase,portal	Sinorhizobium_phage(86.11%)	57	1453058:1453080	1501482:1501504
1453058:1453080	attL	TTTGCCGTGGCGCCTATGATCGA	NA	NA	NA	NA
WP_014529381.1|1453812_1454346_-	hypothetical protein	NA	A0A291AUJ2	Sinorhizobium_phage	46.5	6.1e-31
WP_014529382.1|1454342_1454711_-	DUF4326 domain-containing protein	NA	A0A0A8IN79	Aurantimonas_phage	45.2	4.5e-17
WP_014529383.1|1454707_1455316_-	hypothetical protein	NA	NA	NA	NA	NA
WP_041862273.1|1456624_1456870_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014529386.1|1456866_1457040_-	hypothetical protein	NA	A0A291AUK2	Sinorhizobium_phage	62.5	5.1e-11
WP_014529387.1|1457154_1457388_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014529388.1|1457480_1457663_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014529389.1|1457817_1458051_+	hypothetical protein	NA	A0A291AUS0	Sinorhizobium_phage	68.4	2.7e-23
WP_014529390.1|1458040_1458340_+	hypothetical protein	NA	A0A291AUR7	Sinorhizobium_phage	58.3	1.6e-28
WP_041862274.1|1458336_1459155_-	helix-turn-helix transcriptional regulator	NA	A0A291AUR9	Sinorhizobium_phage	78.4	1.9e-119
WP_014529392.1|1459126_1459381_+	hypothetical protein	NA	A0A291AUR8	Sinorhizobium_phage	71.1	2.0e-24
WP_014529393.1|1459599_1460052_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014529394.1|1460051_1460273_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014529395.1|1460272_1460521_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014529396.1|1460517_1460670_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014529397.1|1460741_1461476_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014529398.1|1461475_1461835_+	winged helix-turn-helix domain-containing protein	NA	A0A0B5A598	Paracoccus_phage	47.0	3.9e-13
WP_014529399.1|1461831_1463721_+	ParB N-terminal domain-containing protein	NA	M4MB46	Vibrio_phage	28.3	3.1e-16
WP_041862275.1|1463717_1463915_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014529401.1|1463911_1464226_+	hypothetical protein	NA	A0A291AUT2	Sinorhizobium_phage	62.6	3.1e-22
WP_014529402.1|1464209_1464416_+	hypothetical protein	NA	NA	NA	NA	NA
WP_041862276.1|1464412_1465714_+	helix-turn-helix domain-containing protein	NA	A0A068CE61	Rhizobium_phage	43.3	1.6e-77
WP_014529404.1|1465697_1466342_+	transcription antitermination protein NusG	NA	A0A291AUL3	Sinorhizobium_phage	67.3	6.9e-77
WP_014529405.1|1466574_1467321_+	hypothetical protein	NA	A0A291AUL1	Sinorhizobium_phage	83.9	2.5e-115
WP_014529406.1|1467470_1468112_+	hypothetical protein	NA	A0A291AUL0	Sinorhizobium_phage	59.1	1.6e-54
WP_014529409.1|1470162_1472121_+|portal	phage portal protein	portal	A0A291AUL8	Sinorhizobium_phage	84.1	2.0e-289
WP_014529410.1|1472117_1473023_+	S49 family peptidase	NA	A0A291AUM2	Sinorhizobium_phage	84.8	1.6e-143
WP_014529411.1|1473048_1473591_+	hypothetical protein	NA	A0A291AUL6	Sinorhizobium_phage	78.0	2.1e-39
WP_014529413.1|1473976_1475008_+|capsid	major capsid protein	capsid	A0A291AUL7	Sinorhizobium_phage	87.1	3.4e-179
WP_014529414.1|1475085_1475490_+	hypothetical protein	NA	A0A291AUM1	Sinorhizobium_phage	55.7	2.3e-14
WP_014529415.1|1475486_1475813_+	hypothetical protein	NA	A0A291AUL9	Sinorhizobium_phage	70.8	3.6e-34
WP_014529416.1|1475815_1476112_+	hypothetical protein	NA	A0A291AUM3	Sinorhizobium_phage	62.9	3.0e-27
WP_014529417.1|1476113_1476578_+	hypothetical protein	NA	A0A291AUM4	Sinorhizobium_phage	68.2	3.2e-52
WP_011975792.1|1476670_1477081_+|tail	tail protein	tail	A0A291AUM5	Sinorhizobium_phage	76.5	3.7e-52
WP_014529418.1|1477093_1477495_+	hypothetical protein	NA	A0A291AUM7	Sinorhizobium_phage	77.7	1.3e-49
WP_014529419.1|1477542_1477734_+	hypothetical protein	NA	A0A291AUN4	Sinorhizobium_phage	74.2	1.5e-19
WP_014529420.1|1477749_1477914_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014529421.1|1478007_1479879_+	hypothetical protein	NA	A0A291AUM6	Sinorhizobium_phage	59.7	7.6e-185
WP_014529422.1|1479878_1480529_+	hypothetical protein	NA	A0A291AUM9	Sinorhizobium_phage	70.0	5.1e-80
WP_014529423.1|1480525_1481116_+	DUF2163 domain-containing protein	NA	A0A291AUM8	Sinorhizobium_phage	71.1	5.9e-75
WP_011976009.1|1481248_1481521_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014529424.1|1481590_1481995_+	hypothetical protein	NA	A0A291AUN0	Sinorhizobium_phage	73.1	1.4e-48
WP_014529425.1|1482001_1484755_+|tail	phage tail protein	tail	A0A291AUN1	Sinorhizobium_phage	61.5	4.4e-258
WP_014529426.1|1484754_1486269_+	hypothetical protein	NA	A0A2D2W219	Sinorhizobium_phage	87.8	2.7e-265
WP_014529427.1|1486280_1488305_+|tail	tail fiber domain-containing protein	tail	A0A2L2R219	Sinorhizobium_phage	31.1	4.7e-55
WP_014529428.1|1488840_1489032_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014529430.1|1489642_1490611_+	chitinase	NA	A0A076G6J8	Sinorhizobium_phage	87.7	1.2e-165
WP_080567520.1|1490610_1490895_+	hypothetical protein	NA	A0A076G8H8	Sinorhizobium_phage	59.6	3.5e-25
WP_014529432.1|1491098_1491464_+	hypothetical protein	NA	A0A076GD39	Sinorhizobium_phage	72.5	2.4e-42
WP_014529434.1|1492311_1492491_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014529435.1|1492678_1493845_-	TlpA family protein disulfide reductase	NA	NA	NA	NA	NA
WP_014529436.1|1494172_1494910_-	NPP1 family protein	NA	NA	NA	NA	NA
WP_014529437.1|1495194_1495557_-	thioredoxin fold domain-containing protein	NA	NA	NA	NA	NA
WP_014529438.1|1496562_1497225_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014529439.1|1497287_1498238_+	S8/S53 family peptidase	NA	NA	NA	NA	NA
WP_014529440.1|1498939_1499449_+	nucleoside kinase	NA	NA	NA	NA	NA
WP_014529441.1|1500240_1501326_-|integrase	site-specific integrase	integrase	I6NSG1	Burkholderia_phage	58.7	6.3e-115
1501482:1501504	attR	TTTGCCGTGGCGCCTATGATCGA	NA	NA	NA	NA
>prophage 4
NC_017325	Sinorhizobium meliloti SM11, complete sequence	3908022	1799048	1825764	3908022	terminase,head	Sinorhizobium_phage(41.67%)	46	NA	NA
WP_014529511.1|1799048_1799414_-	hypothetical protein	NA	Q8W6F3	Sinorhizobium_phage	71.7	6.7e-45
WP_014529512.1|1799410_1800088_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014529513.1|1800084_1800291_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014529514.1|1800287_1800743_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014529515.1|1800739_1801201_-	recombination protein NinB	NA	A0A0P0ZCW6	Stx2-converting_phage	43.8	5.5e-20
WP_014529516.1|1801204_1801852_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014529517.1|1801851_1802757_-	ATP-binding protein	NA	Q7Y5X1	Haemophilus_phage	44.9	2.3e-62
WP_014529518.1|1802747_1802996_-	hypothetical protein	NA	NA	NA	NA	NA
WP_020479514.1|1802992_1803364_-	hypothetical protein	NA	NA	NA	NA	NA
WP_017272177.1|1803798_1804158_+	hypothetical protein	NA	NA	NA	NA	NA
WP_017272178.1|1804160_1804961_-	LexA family transcriptional regulator	NA	A0A291AUK0	Sinorhizobium_phage	67.8	2.2e-101
WP_017272179.1|1805055_1805289_+	hypothetical protein	NA	A0A291AUJ6	Sinorhizobium_phage	53.2	4.6e-15
WP_014529521.1|1805294_1805543_-	hypothetical protein	NA	NA	NA	NA	NA
WP_017272665.1|1805629_1805917_+	hypothetical protein	NA	A0A172Q0P4	Acinetobacter_phage	57.9	3.2e-18
WP_014529522.1|1805917_1806526_+	HNH endonuclease	NA	A0A1X9SFK6	Acinetobacter_phage	39.8	1.4e-23
WP_014529523.1|1806526_1807225_+	hypothetical protein	NA	NA	NA	NA	NA
WP_017272666.1|1807236_1807374_-	hypothetical protein	NA	NA	NA	NA	NA
WP_017272667.1|1807797_1808235_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014529527.1|1808650_1808836_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014529528.1|1808832_1809036_+	hypothetical protein	NA	A0A076G6Y4	Sinorhizobium_phage	77.6	8.0e-24
WP_014529529.1|1809032_1809401_+	phage endonuclease	NA	NA	NA	NA	NA
WP_017272668.1|1809724_1810123_+	hypothetical protein	NA	M9Q2G6	Clostridium_phage	41.9	8.4e-09
WP_014529531.1|1810172_1810709_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014529532.1|1810705_1811512_+	hypothetical protein	NA	A0A291LAU4	Bordetella_phage	45.7	2.2e-32
WP_014529533.1|1811508_1811940_+	GcrA cell cycle regulator	NA	NA	NA	NA	NA
WP_014529534.1|1811936_1812554_+	hypothetical protein	NA	A0A076G6H3	Sinorhizobium_phage	39.4	4.0e-34
WP_014529535.1|1812694_1812946_-	acyl carrier protein	NA	NA	NA	NA	NA
WP_014529536.1|1813292_1813973_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_017271928.1|1814073_1814349_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014529537.1|1814371_1814872_+|terminase	terminase small subunit	terminase	A0A076GD11	Sinorhizobium_phage	44.4	3.2e-29
WP_014529538.1|1814875_1816207_+	DNA-packaging protein	NA	Q1WDG8	Streptomyces_phage	34.4	1.7e-37
WP_014529539.1|1816215_1817565_+	DUF1073 domain-containing protein	NA	L7TRA1	Rhizobium_phage	52.1	1.5e-129
WP_017272715.1|1817561_1818038_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014529541.1|1818135_1819281_+	DUF2213 domain-containing protein	NA	A0A2R3UA67	Siphoviridae_environmental_samples	47.6	2.5e-82
WP_014529542.1|1819293_1819764_+	hypothetical protein	NA	A0A2H4J1G1	uncultured_Caudovirales_phage	62.2	7.8e-38
WP_014529543.1|1819788_1820757_+	DUF2184 domain-containing protein	NA	A0A2H4J526	uncultured_Caudovirales_phage	76.3	3.5e-141
WP_014529544.1|1820771_1821113_+	hypothetical protein	NA	A0A2H4J908	uncultured_Caudovirales_phage	47.5	3.0e-07
WP_014529545.1|1821165_1821660_+	hypothetical protein	NA	A0A076G6I4	Sinorhizobium_phage	46.5	3.0e-24
WP_014529546.1|1821669_1821831_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014529547.1|1821909_1822275_+	hypothetical protein	NA	A0A076G8G5	Sinorhizobium_phage	76.7	1.0e-45
WP_014529548.1|1822271_1822415_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014529549.1|1822573_1823083_-	lipocalin family protein	NA	A0A1W6JNX6	Morganella_phage	38.2	3.6e-20
WP_014529550.1|1823161_1824199_+|head	head morphogenesis protein	head	A0A076G6I6	Sinorhizobium_phage	50.6	2.6e-78
WP_014529551.1|1824198_1824645_+	hypothetical protein	NA	A0A076G8G8	Sinorhizobium_phage	37.8	1.2e-16
WP_014529552.1|1824851_1825277_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014529553.1|1825278_1825764_+	hypothetical protein	NA	A0A2D1GNF2	Pseudomonas_phage	30.9	3.2e-10
>prophage 5
NC_017325	Sinorhizobium meliloti SM11, complete sequence	3908022	1831968	1900116	3908022	terminase,tRNA,transposase,capsid,tail,head,portal	Sinorhizobium_phage(83.67%)	83	NA	NA
WP_014529564.1|1831968_1834716_+|tail	phage tail protein	tail	A0A291AUN1	Sinorhizobium_phage	61.6	1.2e-260
WP_014529567.1|1836228_1836627_+	hypothetical protein	NA	A0A291AUN5	Sinorhizobium_phage	63.6	1.5e-26
WP_014531024.1|1836753_1838283_+|transposase	IS21 family transposase	transposase	K4I413	Acidithiobacillus_phage	43.9	2.7e-119
WP_012477343.1|1838295_1839033_+	ATP-binding protein	NA	K4HZD4	Acidithiobacillus_phage	47.5	1.1e-57
WP_014529569.1|1839966_1840314_+	hypothetical protein	NA	A0A2H4J9Z7	uncultured_Caudovirales_phage	50.0	1.4e-23
WP_014529570.1|1840300_1840636_+	hypothetical protein	NA	A0A291AUN7	Sinorhizobium_phage	70.8	1.7e-26
WP_014529571.1|1841073_1842042_+	chitinase	NA	A0A076G6J8	Sinorhizobium_phage	88.6	8.2e-167
WP_014529572.1|1842041_1842401_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014529573.1|1842465_1842828_+	hypothetical protein	NA	A0A076GD39	Sinorhizobium_phage	71.4	5.2e-42
WP_014529575.1|1843452_1845354_-	potassium transporter Kup	NA	M1IAJ4	Acanthocystis_turfacea_Chlorella_virus	30.5	5.9e-68
WP_014529577.1|1846063_1846213_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014529578.1|1846540_1847584_-	TlpA family protein disulfide reductase	NA	NA	NA	NA	NA
WP_014529579.1|1847666_1848401_-	NPP1 family protein	NA	NA	NA	NA	NA
WP_186808902.1|1848759_1848969_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003528236.1|1849661_1850252_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010969358.1|1850336_1851791_-	TrkH family potassium uptake protein	NA	NA	NA	NA	NA
WP_010969357.1|1851947_1853195_+	threonine ammonia-lyase	NA	NA	NA	NA	NA
WP_003528242.1|1853272_1853593_+	transcriptional activator HlyU	NA	NA	NA	NA	NA
WP_014529582.1|1853902_1855876_-	bifunctional 2',3'-cyclic-nucleotide 2'-phosphodiesterase/3'-nucleotidase	NA	NA	NA	NA	NA
WP_003528246.1|1856000_1856462_-	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_010969355.1|1856619_1857738_+	alanine dehydrogenase	NA	NA	NA	NA	NA
WP_010969354.1|1857779_1858247_-	DUF1203 domain-containing protein	NA	NA	NA	NA	NA
WP_010969353.1|1858348_1858912_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_010969352.1|1858917_1859781_-	3-mercaptopyruvate sulfurtransferase	NA	NA	NA	NA	NA
WP_010969351.1|1859978_1860728_-|tRNA	alanyl-tRNA editing protein	tRNA	NA	NA	NA	NA
WP_014529584.1|1860735_1861776_-	cysteine synthase A	NA	A0A1X9I5K7	Streptococcus_phage	38.1	3.3e-44
WP_010969349.1|1862090_1862939_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_003528289.1|1863132_1863372_+	AbrB/MazE/SpoVT family DNA-binding domain-containing protein	NA	NA	NA	NA	NA
WP_010969348.1|1863368_1863767_+	PIN domain-containing protein	NA	NA	NA	NA	NA
WP_003528293.1|1863843_1864170_-	multidrug efflux SMR transporter	NA	NA	NA	NA	NA
WP_010969347.1|1864166_1864511_-	multidrug efflux SMR transporter	NA	NA	NA	NA	NA
WP_014529585.1|1864715_1864916_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014529586.1|1864915_1865293_-	HNH endonuclease	NA	A0A291AUJ4	Sinorhizobium_phage	65.0	8.4e-43
WP_014529587.1|1865289_1865829_-	hypothetical protein	NA	A0A291AUJ2	Sinorhizobium_phage	45.2	1.1e-27
WP_014529588.1|1865825_1866197_-	DUF4326 domain-containing protein	NA	A0A291AUQ7	Sinorhizobium_phage	39.7	6.4e-19
WP_017265688.1|1866193_1866376_-	hypothetical protein	NA	A0A291AUC9	Sinorhizobium_phage	54.5	1.9e-08
WP_014529589.1|1866368_1866692_-	hypothetical protein	NA	A0A291AUJ5	Sinorhizobium_phage	47.0	1.3e-15
WP_014529590.1|1866688_1867021_-	hypothetical protein	NA	NA	NA	NA	NA
WP_017265689.1|1867036_1867282_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014529592.1|1867278_1867452_-	hypothetical protein	NA	NA	NA	NA	NA
WP_017265691.1|1867571_1867805_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014529594.1|1867898_1868081_-	hypothetical protein	NA	A0A291AUK1	Sinorhizobium_phage	41.7	2.6e-05
WP_014529595.1|1869044_1869710_-	helix-turn-helix domain-containing protein	NA	A0A1X9HW95	Ruegeria_phage	40.3	9.1e-24
WP_014529596.1|1870271_1870727_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014529597.1|1870726_1870948_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014529598.1|1871193_1871400_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014529599.1|1871396_1872920_+	S-adenosylmethionine-binding protein	NA	A0A2I7QIB9	Vibrio_phage	28.2	2.6e-13
WP_014529600.1|1872916_1873222_+	hypothetical protein	NA	A0A291AUK8	Sinorhizobium_phage	55.0	3.3e-21
WP_020479328.1|1873227_1873476_-	DUF982 domain-containing protein	NA	NA	NA	NA	NA
WP_014529601.1|1873586_1874840_+	hypothetical protein	NA	A0A291AUS5	Sinorhizobium_phage	71.5	3.2e-155
WP_014529602.1|1874823_1875483_+	antitermination factor NusG	NA	NA	NA	NA	NA
WP_014529603.1|1875711_1876458_+	hypothetical protein	NA	A0A291AUL1	Sinorhizobium_phage	84.7	3.0e-116
WP_014529604.1|1876606_1877248_+	hypothetical protein	NA	A0A291AUL0	Sinorhizobium_phage	58.9	1.6e-54
WP_014529605.1|1877244_1879287_+|terminase	phage terminase large subunit family protein	terminase	A0A291AUK9	Sinorhizobium_phage	89.7	0.0e+00
WP_014529606.1|1879297_1879534_+	hypothetical protein	NA	A0A291AUL5	Sinorhizobium_phage	79.5	7.6e-26
WP_014529607.1|1879530_1881252_+|portal	phage portal protein	portal	A0A291AUL8	Sinorhizobium_phage	83.2	9.2e-286
WP_014529608.1|1881248_1882154_+	S49 family peptidase	NA	A0A291AUM2	Sinorhizobium_phage	86.1	3.1e-144
WP_014529609.1|1882179_1882722_+	hypothetical protein	NA	A0A291AUL6	Sinorhizobium_phage	77.5	1.4e-38
WP_014529610.1|1882724_1883081_+|head	head decoration protein	head	A0A291AUM0	Sinorhizobium_phage	84.7	3.1e-47
WP_014529611.1|1883108_1884140_+|capsid	major capsid protein	capsid	A0A291AUL7	Sinorhizobium_phage	87.1	1.9e-177
WP_014529612.1|1884214_1884619_+	hypothetical protein	NA	A0A291AUM1	Sinorhizobium_phage	60.6	6.1e-15
WP_014529613.1|1884615_1884942_+	hypothetical protein	NA	A0A291AUL9	Sinorhizobium_phage	70.8	3.6e-34
WP_014529614.1|1884944_1885238_+	hypothetical protein	NA	A0A291AUM3	Sinorhizobium_phage	66.0	1.0e-27
WP_014529615.1|1885239_1885704_+	hypothetical protein	NA	A0A291AUM4	Sinorhizobium_phage	65.6	1.5e-49
WP_011975792.1|1885797_1886208_+|tail	tail protein	tail	A0A291AUM5	Sinorhizobium_phage	76.5	3.7e-52
WP_014529616.1|1886220_1886622_+	hypothetical protein	NA	A0A291AUM7	Sinorhizobium_phage	77.7	9.9e-50
WP_014529419.1|1886669_1886861_+	hypothetical protein	NA	A0A291AUN4	Sinorhizobium_phage	74.2	1.5e-19
WP_014529617.1|1886861_1887041_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014529618.1|1887143_1889015_+	hypothetical protein	NA	A0A291AUM6	Sinorhizobium_phage	59.4	6.9e-186
WP_014529619.1|1889014_1889665_+	hypothetical protein	NA	A0A291AUM9	Sinorhizobium_phage	69.1	5.7e-79
WP_014529620.1|1889661_1890252_+	DUF2163 domain-containing protein	NA	A0A291AUM8	Sinorhizobium_phage	72.1	5.3e-76
WP_013843999.1|1890397_1890670_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014529621.1|1890741_1891146_+	hypothetical protein	NA	A0A291AUN0	Sinorhizobium_phage	70.9	1.6e-47
WP_014529622.1|1891152_1893810_+|tail	phage tail protein	tail	A0A291AUN1	Sinorhizobium_phage	64.2	9.9e-263
WP_026029902.1|1893809_1895324_+	hypothetical protein	NA	A0A2D2W219	Sinorhizobium_phage	87.6	6.0e-265
WP_014529624.1|1895335_1896469_+	hypothetical protein	NA	A0A2L2R219	Sinorhizobium_phage	42.9	6.1e-36
WP_014529625.1|1896468_1896816_+	hypothetical protein	NA	A0A2H4J9Z7	uncultured_Caudovirales_phage	47.4	1.3e-21
WP_014529626.1|1896802_1897138_+	hypothetical protein	NA	A0A291AUN7	Sinorhizobium_phage	71.9	9.8e-27
WP_014529627.1|1897559_1897829_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014529628.1|1897977_1898946_+	chitinase	NA	A0A076G6J8	Sinorhizobium_phage	86.4	1.7e-164
WP_014529629.1|1898945_1899263_+	ammonia monooxygenase	NA	A0A291AUV3	Sinorhizobium_phage	63.9	3.4e-37
WP_014529630.1|1899262_1899547_+	hypothetical protein	NA	A0A076G8H8	Sinorhizobium_phage	61.7	9.2e-26
WP_014529631.1|1899750_1900116_+	hypothetical protein	NA	A0A076GD39	Sinorhizobium_phage	73.3	3.7e-43
>prophage 6
NC_017325	Sinorhizobium meliloti SM11, complete sequence	3908022	2010399	2021648	3908022	tRNA	uncultured_Mediterranean_phage(80.0%)	12	NA	NA
WP_010969286.1|2010399_2011938_-	LysM peptidoglycan-binding domain-containing protein	NA	I3PV24	Clostridium_phage	32.8	1.0e-14
WP_010969285.1|2012261_2012915_-	biotin transport regulator	NA	NA	NA	NA	NA
WP_014526709.1|2013086_2013740_-	protein-L-isoaspartate(D-aspartate) O-methyltransferase	NA	A0A1B1IU40	uncultured_Mediterranean_phage	34.6	2.6e-15
WP_010969283.1|2013736_2014507_-	5'/3'-nucleotidase SurE	NA	A0A1B1ITZ2	uncultured_Mediterranean_phage	30.9	1.5e-22
WP_003534571.1|2014534_2015818_-|tRNA	serine--tRNA ligase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	47.0	8.0e-101
WP_003534569.1|2015954_2016797_-	twin-arginine translocase subunit TatC	NA	A0A1B1IVR7	uncultured_Mediterranean_phage	41.2	1.7e-43
WP_010969282.1|2016793_2017441_-	twin-arginine translocase subunit TatB	NA	NA	NA	NA	NA
WP_003534564.1|2017514_2017721_-	twin-arginine translocase TatA/TatE family subunit	NA	A0A1B1IVR9	uncultured_Mediterranean_phage	65.9	8.2e-08
WP_010969280.1|2017815_2018925_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	37.6	1.4e-29
WP_010969279.1|2018989_2019709_-	SMC-Scp complex subunit ScpB	NA	A0A1B1IVT7	uncultured_Mediterranean_phage	45.2	9.8e-40
WP_014526708.1|2019701_2020541_-	segregation/condensation protein A	NA	A0A1B1IVW1	uncultured_Mediterranean_phage	34.7	1.8e-32
WP_010969277.1|2020613_2021648_-	beta-N-acetylhexosaminidase	NA	A0A1B1IVS3	uncultured_Mediterranean_phage	42.6	2.0e-22
>prophage 7
NC_017325	Sinorhizobium meliloti SM11, complete sequence	3908022	2238986	2299154	3908022	integrase,terminase,tRNA,capsid,tail,head,portal	Bacillus_phage(16.67%)	60	2282324:2282343	2295955:2295974
WP_003533050.1|2238986_2239274_-|tRNA	Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC	tRNA	NA	NA	NA	NA
WP_003533048.1|2239378_2240083_-	metal-dependent hydrolase	NA	NA	NA	NA	NA
WP_003533046.1|2240206_2240704_+	Holliday junction resolvase RuvX	NA	NA	NA	NA	NA
WP_003533044.1|2240637_2240973_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010969169.1|2240969_2241125_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014529717.1|2241066_2242266_+	AEC family transporter	NA	NA	NA	NA	NA
WP_003533037.1|2242247_2243900_-	oxidoreductase	NA	NA	NA	NA	NA
WP_003533035.1|2244042_2244984_+	aspartate carbamoyltransferase catalytic subunit	NA	A7RB08	Paramecium_bursaria_Chlorella_virus	35.2	1.2e-29
WP_010969167.1|2244980_2246273_+	dihydroorotase	NA	NA	NA	NA	NA
WP_014529718.1|2246308_2246914_+	glycerol-3-phosphate 1-O-acyltransferase PlsY	NA	NA	NA	NA	NA
WP_014529719.1|2246913_2248065_+	DNA-protecting protein DprA	NA	S6BFL3	Thermus_phage	42.9	2.6e-26
WP_003533027.1|2248274_2250959_+	type I DNA topoisomerase	NA	A0A0G2Y787	Acanthamoeba_polyphaga_mimivirus	32.2	3.6e-103
WP_014529720.1|2250961_2253331_+	ribonuclease R	NA	Q0GXV6	Lactococcus_phage	32.7	9.3e-55
WP_010969162.1|2253367_2253823_+	DUF983 domain-containing protein	NA	NA	NA	NA	NA
WP_010969161.1|2253819_2254536_+	NUDIX domain-containing protein	NA	NA	NA	NA	NA
WP_014529721.1|2254548_2255733_+	MFS transporter	NA	NA	NA	NA	NA
WP_003537640.1|2255827_2255995_+	50S ribosomal protein L33	NA	NA	NA	NA	NA
WP_003537641.1|2256481_2257849_-	PleD family two-component system response regulator	NA	W8CYM9	Bacillus_phage	43.2	1.5e-17
WP_003537642.1|2257866_2258238_-	response regulator	NA	A0A1V0SGR9	Hokovirus	24.4	6.2e-06
WP_003537643.1|2258394_2258664_+	DUF3572 domain-containing protein	NA	NA	NA	NA	NA
WP_010969160.1|2258870_2260163_+	DNA polymerase IV	NA	NA	NA	NA	NA
WP_010969159.1|2260293_2261520_+	L,D-transpeptidase family protein	NA	NA	NA	NA	NA
WP_010969158.1|2261799_2265309_-	DNA polymerase III subunit alpha	NA	A0A0K1Y8J9	Streptomyces_phage	36.4	6.9e-179
WP_010969157.1|2265777_2266464_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	34.4	3.2e-32
WP_014529722.1|2266481_2267792_-	lipoprotein-releasing ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_003531873.1|2267812_2269141_-|tRNA	proline--tRNA ligase	tRNA	NA	NA	NA	NA
WP_010969155.1|2269852_2270068_+	ribbon-helix-helix protein, CopG family	NA	NA	NA	NA	NA
WP_010969154.1|2270061_2270427_+	type II toxin-antitoxin system VapC family toxin	NA	NA	NA	NA	NA
WP_014526683.1|2270513_2270783_-	DUF1467 family protein	NA	NA	NA	NA	NA
WP_010969152.1|2270922_2271327_-	methylmalonyl-CoA epimerase	NA	NA	NA	NA	NA
WP_010969151.1|2271385_2273053_-	ribonuclease J	NA	NA	NA	NA	NA
WP_014529723.1|2273080_2273848_-	biotin--[acetyl-CoA-carboxylase] ligase	NA	NA	NA	NA	NA
WP_010969150.1|2273844_2275287_-	NADH-quinone oxidoreductase subunit NuoN	NA	NA	NA	NA	NA
WP_003531857.1|2275306_2276818_-	NADH-quinone oxidoreductase subunit M	NA	NA	NA	NA	NA
WP_003531855.1|2276817_2278812_-	NADH-quinone oxidoreductase subunit L	NA	NA	NA	NA	NA
WP_003531854.1|2278819_2279128_-	NADH-quinone oxidoreductase subunit NuoK	NA	NA	NA	NA	NA
WP_003531851.1|2279157_2279772_-	NADH-quinone oxidoreductase subunit J	NA	NA	NA	NA	NA
WP_003531850.1|2279923_2280415_-	NADH-quinone oxidoreductase subunit NuoI	NA	NA	NA	NA	NA
WP_003531848.1|2280479_2281523_-	NADH-quinone oxidoreductase subunit NuoH	NA	NA	NA	NA	NA
WP_010969148.1|2281543_2283625_-	NADH-quinone oxidoreductase subunit G	NA	NA	NA	NA	NA
2282324:2282343	attL	GGAAACGAGTTCGGCGAGCG	NA	NA	NA	NA
WP_010969147.1|2283825_2284470_-	NADH ubiquinone oxidoreductase	NA	NA	NA	NA	NA
WP_003531839.1|2284476_2285781_-	NADH-quinone oxidoreductase subunit NuoF	NA	NA	NA	NA	NA
WP_010969146.1|2285795_2286623_-	NADH-quinone oxidoreductase subunit NuoE	NA	NA	NA	NA	NA
WP_003531834.1|2286639_2286894_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003531832.1|2286893_2288084_-	NADH-quinone oxidoreductase subunit D	NA	NA	NA	NA	NA
WP_014529726.1|2288140_2288746_-	NADH-quinone oxidoreductase subunit C	NA	NA	NA	NA	NA
WP_003531828.1|2288763_2289342_-	NADH-quinone oxidoreductase subunit B	NA	NA	NA	NA	NA
WP_003531826.1|2289332_2289698_-	NADH-quinone oxidoreductase subunit A	NA	NA	NA	NA	NA
WP_014529727.1|2290831_2292397_+|integrase	integrase	integrase	NA	NA	NA	NA
WP_050810588.1|2292496_2293726_+|portal	phage portal protein	portal	Q6DMU2	Streptococcus_phage	32.2	1.4e-46
WP_014529729.1|2293722_2294130_+	gene transfer agent family protein	NA	NA	NA	NA	NA
WP_014529730.1|2294126_2295683_+|capsid	phage major capsid protein	capsid	B0VK33	Azospirillum_phage	36.5	2.2e-44
WP_014529731.1|2295686_2296316_+	hypothetical protein	NA	NA	NA	NA	NA
2295955:2295974	attR	CGCTCGCCGAACTCGTTTCC	NA	NA	NA	NA
WP_014529732.1|2296312_2296666_+	HNH endonuclease	NA	Q38456	Bacillus_phage	48.1	4.2e-20
WP_014529733.1|2296662_2297298_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014529734.1|2297285_2297588_+|head,tail	phage gp6-like head-tail connector protein	head,tail	NA	NA	NA	NA
WP_014529735.1|2297577_2298018_+	HK97 gp10 family phage protein	NA	NA	NA	NA	NA
WP_144005754.1|2298010_2298430_+	DUF3168 domain-containing protein	NA	NA	NA	NA	NA
WP_014529737.1|2298429_2298747_+|head	phage head closure protein	head	NA	NA	NA	NA
WP_014529738.1|2298743_2299154_+|terminase	phage terminase small subunit P27 family	terminase	A0A142KAM7	Gordonia_phage	39.4	6.9e-06
>prophage 8
NC_017325	Sinorhizobium meliloti SM11, complete sequence	3908022	2356218	2399399	3908022	terminase,tail,head	Sinorhizobium_phage(57.14%)	63	NA	NA
WP_014529760.1|2356218_2356587_-	hypothetical protein	NA	A0A076GD39	Sinorhizobium_phage	71.7	2.4e-42
WP_041862322.1|2356791_2357076_-	hypothetical protein	NA	A0A076G8H8	Sinorhizobium_phage	64.9	3.2e-26
WP_014529762.1|2357394_2358363_-	chitinase	NA	A0A076G6J8	Sinorhizobium_phage	85.8	2.1e-162
WP_041862407.1|2358563_2358815_+	hypothetical protein	NA	NA	NA	NA	NA
WP_186007363.1|2359414_2359672_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014529764.1|2359956_2360292_-	hypothetical protein	NA	A0A291AUN7	Sinorhizobium_phage	69.7	8.3e-26
WP_014529765.1|2360278_2360626_-	hypothetical protein	NA	A0A2H4J9Z7	uncultured_Caudovirales_phage	46.5	4.1e-20
WP_014529766.1|2360625_2361726_-	hypothetical protein	NA	A0A291AUN5	Sinorhizobium_phage	56.5	6.7e-32
WP_014529767.1|2361737_2363252_-	hypothetical protein	NA	A0A2D2W219	Sinorhizobium_phage	88.2	6.4e-267
WP_014529768.1|2363251_2365909_-|tail	phage tail protein	tail	A0A291AUN1	Sinorhizobium_phage	64.3	5.2e-264
WP_014529769.1|2365915_2366320_-	hypothetical protein	NA	A0A291AUN0	Sinorhizobium_phage	73.9	6.5e-49
WP_011976009.1|2366388_2366661_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011976010.1|2366807_2367398_-	hypothetical protein	NA	A0A291AUM8	Sinorhizobium_phage	68.5	3.2e-73
WP_011976011.1|2367394_2368048_-	hypothetical protein	NA	A0A291AUM9	Sinorhizobium_phage	55.0	2.0e-55
WP_014529559.1|2368111_2368507_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011976013.1|2368503_2370600_-|tail	phage tail length tape measure family protein	tail	A0A076G7H2	Sinorhizobium_phage	64.4	2.4e-17
WP_011976014.1|2370621_2371056_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011976016.1|2371474_2371876_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011976017.1|2371890_2372376_-	hypothetical protein	NA	A0A2D1GNF2	Pseudomonas_phage	30.9	2.4e-10
WP_011976018.1|2372377_2372803_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014529771.1|2373009_2373456_-	hypothetical protein	NA	W6E8K5	Rhizobium_phage	41.0	9.7e-14
WP_014529772.1|2373455_2374493_-|head	head morphogenesis protein SPP1 gp7	head	A0A076G6I6	Sinorhizobium_phage	47.5	7.4e-73
WP_014529773.1|2374553_2374697_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014529774.1|2374693_2375059_-	hypothetical protein	NA	A0A076G8G5	Sinorhizobium_phage	73.3	9.6e-44
WP_011976022.1|2375139_2375301_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014529775.1|2375310_2375805_-	hypothetical protein	NA	A0A059VG19	Pseudomonas_phage	44.2	3.8e-19
WP_014529776.1|2375835_2376291_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014529777.1|2376304_2377258_-	DUF2184 domain-containing protein	NA	L7TMZ5	Rhizobium_phage	49.8	2.8e-74
WP_014529778.1|2377272_2377710_-	DUF2190 family protein	NA	NA	NA	NA	NA
WP_014529779.1|2377709_2378852_-	DUF2213 domain-containing protein	NA	A0A2R3UA67	Siphoviridae_environmental_samples	48.9	9.3e-85
WP_187294443.1|2378930_2379086_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014529780.1|2379091_2379319_-	hypothetical protein	NA	A0A1B1IHZ5	Skeletonema_virus	59.7	1.1e-16
WP_014529781.1|2379402_2381223_-	DUF1073 domain-containing protein	NA	A0A2H4J4I9	uncultured_Caudovirales_phage	51.9	5.0e-173
WP_041862326.1|2381230_2382649_-|terminase	PBSX family phage terminase large subunit	terminase	A0A077KAW0	Edwardsiella_phage	62.2	1.6e-158
WP_014529783.1|2382593_2383151_-	hypothetical protein	NA	A0A2H4J2I6	uncultured_Caudovirales_phage	42.6	3.2e-22
WP_080567533.1|2383243_2383420_+	DUF2158 domain-containing protein	NA	NA	NA	NA	NA
WP_144005756.1|2383736_2384240_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014529784.1|2384216_2384942_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_014529785.1|2385256_2385508_+	acyl carrier protein	NA	NA	NA	NA	NA
WP_014529786.1|2385647_2386268_-	hypothetical protein	NA	A0A076G6H3	Sinorhizobium_phage	38.5	2.6e-33
WP_014529787.1|2386264_2386708_-	GcrA cell cycle regulator	NA	NA	NA	NA	NA
WP_041862329.1|2386704_2387481_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014529789.1|2387422_2388277_-	hypothetical protein	NA	M4QM11	Sulfitobacter_phage	34.9	2.4e-13
WP_014529790.1|2388273_2388651_-	DUF1064 domain-containing protein	NA	A0A0R6PIZ9	Moraxella_phage	38.5	8.5e-11
WP_014529791.1|2388647_2388848_-	hypothetical protein	NA	A0A076G6Y4	Sinorhizobium_phage	74.6	9.6e-22
WP_014529792.1|2388844_2389030_-	hypothetical protein	NA	NA	NA	NA	NA
WP_041862331.1|2389034_2389394_-	hypothetical protein	NA	NA	NA	NA	NA
WP_018009773.1|2389445_2389820_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014529795.1|2390156_2390360_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014529796.1|2390493_2391438_-	hypothetical protein	NA	NA	NA	NA	NA
WP_018009771.1|2391434_2392004_-	HNH endonuclease	NA	A0A076G7D7	Sinorhizobium_phage	85.2	9.0e-89
WP_014529797.1|2392096_2392345_+	hypothetical protein	NA	NA	NA	NA	NA
WP_041862334.1|2392347_2392539_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_018009769.1|2392633_2393386_+	helix-turn-helix domain-containing protein	NA	A0A291AUK0	Sinorhizobium_phage	58.1	3.1e-68
WP_014529799.1|2394266_2394614_+	hypothetical protein	NA	NA	NA	NA	NA
WP_018009767.1|2394613_2394931_+	hypothetical protein	NA	A0A1I9SES3	Klebsiella_phage	42.5	4.1e-06
WP_014529801.1|2394927_2395164_+	hypothetical protein	NA	A0A076G7C7	Sinorhizobium_phage	53.8	2.0e-18
WP_014529802.1|2395165_2396383_+	hypothetical protein	NA	A0A076G8D7	Sinorhizobium_phage	53.8	2.9e-44
WP_014529803.1|2396385_2397186_+	ERF family protein	NA	NA	NA	NA	NA
WP_014529804.1|2397182_2397851_+	YqaJ viral recombinase family protein	NA	K7ZRM9	Xanthomonas_citri_phage	47.0	1.0e-46
WP_014529805.1|2397853_2398315_+	recombination protein NinB	NA	A0A0P0ZCW6	Stx2-converting_phage	43.8	3.2e-20
WP_014529806.1|2398311_2398989_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014529807.1|2398985_2399399_+	hypothetical protein	NA	Q8W6F3	Sinorhizobium_phage	73.9	3.6e-47
>prophage 9
NC_017325	Sinorhizobium meliloti SM11, complete sequence	3908022	3186826	3195180	3908022	transposase	Acidithiobacillus_phage(33.33%)	8	NA	NA
WP_010970345.1|3186826_3187612_+	aminoglycoside 3'-phosphotransferase	NA	Q75ZG1	Hepacivirus	54.5	5.2e-71
WP_010970346.1|3187653_3188133_-	VOC family protein	NA	NA	NA	NA	NA
WP_003528562.1|3188341_3188776_-	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_003528561.1|3188931_3189855_+	arginase	NA	A0A0N9R043	Chrysochromulina_ericina_virus	32.3	5.1e-25
WP_003528560.1|3190032_3190512_+	purine-binding chemotaxis protein CheW	NA	Q56AR1	Bacillus_thuringiensis_phage	24.0	4.3e-07
WP_014531024.1|3190827_3192357_+|transposase	IS21 family transposase	transposase	K4I413	Acidithiobacillus_phage	43.9	2.7e-119
WP_012477343.1|3192369_3193107_+	ATP-binding protein	NA	K4HZD4	Acidithiobacillus_phage	47.5	1.1e-57
WP_013844892.1|3193398_3195180_+	PAS domain-containing methyl-accepting chemotaxis protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	47.1	1.6e-11
>prophage 1
NC_017327	Sinorhizobium meliloti SM11 plasmid pSmeSM11c, complete sequence	1633319	88614	160408	1633319	transposase	uncultured_virus(22.22%)	52	NA	NA
WP_012477324.1|88614_90123_-|transposase	IS21-like element ISRm9 family transposase	transposase	NA	NA	NA	NA
WP_162145869.1|90852_91323_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_017272622.1|93250_94846_-	bifunctional diguanylate cyclase/phosphodiesterase	NA	NA	NA	NA	NA
WP_014530949.1|96047_96482_-	helix-turn-helix transcriptional regulator	NA	Q8W6G2	Sinorhizobium_phage	47.4	2.7e-24
WP_014530951.1|96823_97243_-	helix-turn-helix transcriptional regulator	NA	A0A1V0EEW3	Caulobacter_phage	39.5	8.9e-09
WP_017275891.1|97535_97784_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014530953.1|98033_98252_-	hypothetical protein	NA	NA	NA	NA	NA
WP_041862553.1|99439_101050_+	tyrosinase family protein	NA	NA	NA	NA	NA
WP_014530957.1|101172_101505_+	hypothetical protein	NA	NA	NA	NA	NA
WP_017266263.1|103159_103594_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_127616802.1|103676_104435_+|transposase	IS3 family transposase	transposase	U5P429	Shigella_phage	43.0	1.3e-21
WP_017266261.1|105101_105830_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014530965.1|105989_106766_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014530968.1|107828_108062_+	Nif11-like leader peptide family natural product precursor	NA	NA	NA	NA	NA
WP_014530968.1|108370_108604_+	Nif11-like leader peptide family natural product precursor	NA	NA	NA	NA	NA
WP_017266275.1|108743_109865_+	YcaO-like family protein	NA	NA	NA	NA	NA
WP_014530970.1|109864_111235_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014530971.1|111231_112449_+	YcaO-like family protein	NA	NA	NA	NA	NA
WP_014530972.1|112508_113471_+	hypothetical protein	NA	NA	NA	NA	NA
WP_017266279.1|113778_114327_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014530974.1|114343_114643_+	MoaD/ThiS family protein	NA	NA	NA	NA	NA
WP_014530975.1|114647_115790_+	molybdopterin-synthase adenylyltransferase MoeB	NA	NA	NA	NA	NA
WP_017274615.1|115810_116431_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_017266283.1|116496_116790_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014530979.1|117431_120353_-	type 2 lantipeptide synthetase LanM family protein	NA	NA	NA	NA	NA
WP_017266285.1|120469_121645_+	C1 family peptidase	NA	NA	NA	NA	NA
WP_080567551.1|123072_123549_+	thermonuclease family protein	NA	NA	NA	NA	NA
WP_014530987.1|125562_127200_-	chaperonin GroEL	NA	A0A219YK78	uncultured_virus	63.1	1.9e-176
WP_014530988.1|127275_127572_-	co-chaperone GroES	NA	A0A221S4G8	uncultured_virus	57.6	3.2e-21
WP_013845245.1|128841_129099_-	acyl carrier protein	NA	NA	NA	NA	NA
WP_013845247.1|130216_130396_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014530994.1|131166_131790_+	hypothetical protein	NA	F1C5D5	Cronobacter_phage	51.5	1.1e-52
WP_017277577.1|131790_132036_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014531000.1|133982_135185_+	cytochrome P450	NA	NA	NA	NA	NA
WP_013845251.1|136550_138500_+	multicopper oxidase domain-containing protein	NA	NA	NA	NA	NA
WP_014528052.1|138527_138920_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014531003.1|138983_140594_+	tyrosinase family protein	NA	NA	NA	NA	NA
WP_013845254.1|140722_141052_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003532601.1|142268_143234_-	magnesium and cobalt transport protein CorA	NA	NA	NA	NA	NA
WP_014531006.1|143313_143604_-	MucR family transcriptional regulator	NA	A0A1P8VVG0	Erythrobacter_phage	53.3	1.4e-08
WP_003532599.1|144259_145027_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_003532595.1|146204_146981_+	hypothetical protein	NA	NA	NA	NA	NA
WP_013845255.1|147144_147873_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014528047.1|147933_148455_+	trypsin-like peptidase domain-containing protein	NA	NA	NA	NA	NA
WP_013845257.1|148583_149174_+	NYN domain-containing protein	NA	NA	NA	NA	NA
WP_017265677.1|150288_152094_+	EAL domain-containing protein	NA	G3MA91	Bacillus_virus	33.9	7.0e-18
WP_026029944.1|153600_153843_-	hypothetical protein	NA	NA	NA	NA	NA
WP_013845262.1|155490_156510_-	1-aminocyclopropane-1-carboxylate deaminase	NA	NA	NA	NA	NA
WP_003532569.1|156653_157130_+	Lrp/AsnC ligand binding domain-containing protein	NA	NA	NA	NA	NA
WP_017266461.1|157305_157647_-	thiazole synthase	NA	NA	NA	NA	NA
WP_013845264.1|157799_158918_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
WP_086017831.1|159305_160408_-|transposase	IS3 family transposase	transposase	A0A1B1P773	Bacillus_phage	29.0	1.7e-11
>prophage 2
NC_017327	Sinorhizobium meliloti SM11 plasmid pSmeSM11c, complete sequence	1633319	167135	173686	1633319		Sinorhizobium_phage(33.33%)	8	NA	NA
WP_014531028.1|167135_167459_-	thioredoxin	NA	A0A1J0GW78	Streptomyces_phage	47.5	2.8e-18
WP_003532546.1|167588_167741_-	hypothetical protein	NA	A0A076GD42	Sinorhizobium_phage	60.5	1.3e-07
WP_014531029.1|168803_169025_-	hypothetical protein	NA	NA	NA	NA	NA
WP_026029965.1|169904_170156_+	hypothetical protein	NA	A0A291AUV5	Sinorhizobium_phage	80.7	3.8e-31
WP_013845271.1|170276_170516_+	hypothetical protein	NA	J7F8X5	Agrobacterium_phage	61.8	8.6e-17
WP_014528036.1|170905_171427_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014528033.1|172402_172606_-	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	51.7	8.0e-08
WP_017267115.1|173092_173686_+	NUDIX hydrolase	NA	A0A2H4IB87	Erwinia_phage	35.3	1.9e-09
>prophage 3
NC_017327	Sinorhizobium meliloti SM11 plasmid pSmeSM11c, complete sequence	1633319	896131	924362	1633319	transposase	Acidithiobacillus_phage(25.0%)	23	NA	NA
WP_010967204.1|896131_897334_-|transposase	IS256-like element ISRm3 family transposase	transposase	A0A218MNI5	uncultured_virus	43.3	1.0e-41
WP_014531565.1|897524_898199_+	iron-sulfur cluster repair di-iron protein	NA	NA	NA	NA	NA
WP_014531566.1|898214_899423_+	NnrS family protein	NA	NA	NA	NA	NA
WP_010967629.1|899445_899739_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014531567.1|899817_901029_-	NO-inducible flavohemoprotein	NA	NA	NA	NA	NA
WP_014528623.1|901695_902565_-	aldo/keto reductase family oxidoreductase	NA	NA	NA	NA	NA
WP_013845420.1|902681_903605_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014531570.1|904584_905460_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_013845417.1|906177_906447_+	AbrB/MazE/SpoVT family DNA-binding domain-containing protein	NA	NA	NA	NA	NA
WP_014531572.1|906443_906863_+	type II toxin-antitoxin system VapC family toxin	NA	NA	NA	NA	NA
WP_014531574.1|907016_907430_-	hypothetical protein	NA	NA	NA	NA	NA
WP_017266244.1|907699_908011_+	type II toxin-antitoxin system HigB family toxin	NA	F5A3A2	Riemerella_phage	36.9	1.3e-12
WP_003526626.1|908028_908409_+	transcriptional regulator	NA	A0A222YXG1	Escherichia_phage	41.7	2.9e-19
WP_014531093.1|908668_909670_+|transposase	IS30 family transposase	transposase	Q9MBM9	Staphylococcus_prophage	34.8	3.1e-44
WP_014531577.1|909795_911169_+|transposase	ISNCY family transposase	transposase	Q4VFZ2	Porcine_endogenous_retrovirus	27.7	7.9e-06
WP_014531578.1|911528_912956_+|transposase	ISNCY family transposase	transposase	NA	NA	NA	NA
WP_017265570.1|913482_914130_-	autoinducer binding domain-containing protein	NA	NA	NA	NA	NA
WP_014531024.1|917028_918558_+|transposase	IS21 family transposase	transposase	K4I413	Acidithiobacillus_phage	43.9	2.7e-119
WP_012477343.1|918570_919308_+	ATP-binding protein	NA	K4HZD4	Acidithiobacillus_phage	47.5	1.1e-57
WP_014531585.1|919712_920333_-	autoinducer synthase	NA	NA	NA	NA	NA
WP_014531586.1|920506_920830_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014529334.1|922044_922857_-	ATP-binding protein	NA	A0A059NT77	Lactococcus_phage	35.7	2.0e-28
WP_012477324.1|922853_924362_-|transposase	IS21-like element ISRm9 family transposase	transposase	NA	NA	NA	NA
>prophage 4
NC_017327	Sinorhizobium meliloti SM11 plasmid pSmeSM11c, complete sequence	1633319	1037616	1101213	1633319	transposase	Bacillus_virus(18.18%)	47	NA	NA
WP_186808768.1|1037616_1038559_+|transposase	IS630 family transposase	transposase	A0A2P0VP61	Tetraselmis_virus	27.2	4.9e-15
WP_010967428.1|1038928_1039567_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014531690.1|1039811_1040267_-|transposase	transposase	transposase	NA	NA	NA	NA
WP_010967426.1|1040626_1042099_-	NAD-dependent succinate-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_013845764.1|1042180_1043260_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	39.3	2.8e-30
WP_014528554.1|1043256_1044057_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_014531691.1|1044058_1044934_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_014531692.1|1045026_1046037_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003536940.1|1046074_1046401_-	NIPSNAP family protein	NA	NA	NA	NA	NA
WP_010967420.1|1046406_1047870_-	aldehyde dehydrogenase	NA	NA	NA	NA	NA
WP_014531693.1|1047875_1048916_-	LLM class flavin-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_015242446.1|1048912_1049848_-	flavin reductase family protein	NA	NA	NA	NA	NA
WP_014531695.1|1049844_1050678_-	alpha/beta fold hydrolase	NA	A0A1D8EVD1	Mycobacterium_phage	37.4	2.5e-07
WP_014531696.1|1050696_1051299_-	amino acid synthesis family protein	NA	NA	NA	NA	NA
WP_012477343.1|1051609_1052347_-	ATP-binding protein	NA	K4HZD4	Acidithiobacillus_phage	47.5	1.1e-57
WP_014531024.1|1052359_1053889_-|transposase	IS21 family transposase	transposase	K4I413	Acidithiobacillus_phage	43.9	2.7e-119
WP_014528546.1|1054369_1055065_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014531698.1|1056198_1057860_-	nodulation protein NoeB	NA	NA	NA	NA	NA
WP_014531699.1|1057866_1059297_-	nodulation protein NoeA	NA	NA	NA	NA	NA
WP_003534891.1|1059274_1059490_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014531700.1|1059686_1060238_-	nodulation acetyltransferase NodL	NA	NA	NA	NA	NA
WP_014531703.1|1061564_1062428_-	cytochrome-c oxidase, cbb3-type subunit III	NA	NA	NA	NA	NA
WP_010967642.1|1062431_1062584_-	CcoQ/FixQ family Cbb3-type cytochrome c oxidase assembly chaperone	NA	NA	NA	NA	NA
WP_014531704.1|1062596_1063328_-	cytochrome-c oxidase, cbb3-type subunit II	NA	NA	NA	NA	NA
WP_014531705.1|1063339_1064959_-	cytochrome-c oxidase, cbb3-type subunit I	NA	NA	NA	NA	NA
WP_014531707.1|1065721_1066357_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_026030503.1|1066436_1066784_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014531712.1|1068578_1069271_-	flavin reductase family protein	NA	NA	NA	NA	NA
WP_167389272.1|1072727_1074095_-	group II intron reverse transcriptase/maturase	NA	A0A0U4J920	Pseudomonas_phage	29.7	9.6e-28
WP_014531721.1|1075718_1076645_-	transcriptional regulator NodD2	NA	NA	NA	NA	NA
WP_017267143.1|1077001_1077154_+	hypothetical protein	NA	NA	NA	NA	NA
WP_086017841.1|1077755_1078974_+|transposase	IS3 family transposase	transposase	A0A1B0Z042	Pseudomonas_phage	53.2	2.9e-76
WP_014531728.1|1081000_1082014_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	29.9	1.5e-14
WP_014531729.1|1082006_1083017_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	28.9	2.0e-14
WP_014531730.1|1083013_1083967_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_017272050.1|1083966_1084965_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_017272049.1|1086781_1088206_-	C69 family dipeptidase	NA	NA	NA	NA	NA
WP_014531735.1|1088500_1089220_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_020479503.1|1089395_1090025_-	6-aminohexanoate-dimer hydrolase	NA	NA	NA	NA	NA
WP_127616699.1|1090104_1090494_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_014531738.1|1090734_1092018_-	ArgE/DapE family deacylase	NA	NA	NA	NA	NA
WP_014531740.1|1092687_1092918_-	3-oxoadipate CoA-transferase	NA	NA	NA	NA	NA
WP_017274279.1|1092935_1093349_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014531743.1|1095236_1096643_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014531744.1|1096717_1097893_-|transposase	IS256 family transposase	transposase	A0A0K2CZ57	Paenibacillus_phage	41.2	5.6e-77
WP_013845338.1|1098790_1099261_+	IS66 family insertion sequence hypothetical protein	NA	NA	NA	NA	NA
WP_014531665.1|1099638_1101213_+|transposase	IS66 family transposase	transposase	A0A0P0ZEB3	Stx2-converting_phage	36.1	8.3e-76
>prophage 5
NC_017327	Sinorhizobium meliloti SM11 plasmid pSmeSM11c, complete sequence	1633319	1114882	1149670	1633319	transposase,integrase	Stx2-converting_phage(33.33%)	26	1108046:1108105	1127441:1129006
1108046:1108105	attL	TGCGCGGCATTGTCGCTGAGCCCGATGCCTGTGCGGGCCGCCCTACGCCGCCTGATCAAC	NA	NA	NA	NA
WP_020479558.1|1114882_1115140_+|integrase	tyrosine-type recombinase/integrase	integrase	NA	NA	NA	NA
WP_144005760.1|1116233_1116569_-	IS66 family insertion sequence element accessory protein TnpB	NA	A0A0P0ZDM8	Stx2-converting_phage	60.5	2.3e-20
WP_014531761.1|1116951_1118148_-|transposase	IS91 family transposase	transposase	NA	NA	NA	NA
WP_017275604.1|1118155_1119037_-|integrase	tyrosine-type recombinase/integrase	integrase	S5W9T9	Leptospira_phage	31.5	2.7e-31
WP_014531764.1|1120533_1121445_+|integrase	tyrosine-type recombinase/integrase	integrase	NA	NA	NA	NA
WP_017275604.1|1122556_1123438_+|integrase	tyrosine-type recombinase/integrase	integrase	S5W9T9	Leptospira_phage	31.5	2.7e-31
WP_014531761.1|1123445_1124642_+|transposase	IS91 family transposase	transposase	NA	NA	NA	NA
WP_014531768.1|1125135_1125510_-|transposase	transposase	transposase	NA	NA	NA	NA
WP_003537652.1|1125969_1127280_+	aminotransferase class III-fold pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
WP_014531769.1|1127308_1128001_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014531752.1|1128007_1128961_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014531770.1|1129079_1130573_+	M81 family metallopeptidase	NA	NA	NA	NA	NA
1127441:1129006	attR	TGCGCGGCATTGTCGCTGAGCCCGATGCCTGTGCGGGCCGCCCTACGCCGCCTGATCAACGAGCGCGCGTTGGATGCCAAGCCATCAGGGACGGCCGTGGTGCCGCGCATGACCCGCCGCGAGTTTTCCGACCTGACTGCGATGCGCTTGCAACTGGAACCGCTGGCGCTGACGCTTGCTGCGCCGCATCTGAAGCCCGCACAGTTCGACCGGTTTGACGCCTTCGTATTGCAGCATGAAACCGCCCGCCTCGAGAGCGATCCGAAAGGCGTGCGGCAGGCCGATACTGGCTTCCTGTTCGAGCTCTACCGCTCCTGCGGTTCGGCCCTGCTGCTCAGCTTCATCGAGAGTCTGTGGCTTCGCCGCAGCCCAATGTTTTGGGAGGCTCGTTGGGCGCTGTTGGGTAGCTCGCTTGGCCGGGCGCCCCACAGGCACAAGGAAATCACCGACGCCCTGCGACAGGGCGAGACCGCTATGGCGCGGGACTTCCTCATCGACGAGATTCGCAACGCCGGCGAGTTCCTGCTCGAGGCGATGAGGTTCCGCGAGGCTACGGACTGAGCCTGCTTAGTTATAGGTGCGCTCCTCCAGTGACGTTTGGGCGATCATCTCATGGATCGTCCGCACGAAGGCGGTCTCGGCCGGGTTCATGCTGCGGCGCGGGTTGACCACGAAGTGGATGTCCACTGCCGGCAGATTTTCCTTCGGCGGCACCTGCCATAGGAGCCTAGCATCGACGTCTCGCTGTGCGACATGCACCGGCAGCGCTCCAATGCCCATCCCGTTGATGATCATACGCCGCACCTCGGGCAGATTGGCCGAGATGCCATGTGGCTCGGGTTGTAGATTGACCCGCTCGCGCAACTGGCGCACCAGATAAAGTGGACCATTCTCACTTTCAGTCTGGAACGACACCGAGCGTTCGCCGGACACCTCCTCGATCCCGACGTCCGACCGGCCGAACAGCCTGTGCGGCGGACCGCAGAACAGGCCGAAGAACTCTCGGAACAAGATGCGGCTGTCCAGCATGGGATCGTCCTCGCGCATCAGGCACAGGCCTACCGACGCCTGGTTCTGGCGCACTCGGCTCAGGACCTCGGCGCTGTCGGTGATCGAGATCGAATAGGTCACCTCGGGATAGGCTATGTTGAAGCGCGCCAGTACCTCATCGAAATGCGAGCAGACCACATGGCTGGTCATGGCGATGGCGATATGGCCGGTGACAACGGTCTCCGCCGCCGCCATCAGACCCGGCAGCCGCGAGATCGAGCCGAAGATCATAAGGCTCTCGCAATAAACCGTCTCACCCGCCGGGGTCAGCGCGAAACGCCCCGGCCGACGATCGAGCAGCCGCTTCTCGGTGGTCTCTTCCAACCGCTTCAGCGCGCTGCTGATTGTAGGCTGGCTGAGATTCATAAACTCTGCCGCACGAGTGACTCCACCCTGCTCGACTACCACGATGAAGGTGCGCAGCAGGTTCCAGTCCAGGCGCCAAAGAAAACGCTCTTCGTAGGGCCGCATTATCTCAACCTATGTCTATCATTATGATTATCTGTTTGCTCTATG	NA	NA	NA	NA
WP_003537613.1|1130640_1131132_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_014531772.1|1132761_1133277_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014531773.1|1133571_1134663_-	uridylate kinase	NA	NA	NA	NA	NA
WP_014531774.1|1134665_1135706_-	aspartate-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_029728238.1|1135929_1136217_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003537756.1|1137543_1138773_+	ATP-grasp domain-containing protein	NA	NA	NA	NA	NA
WP_014531777.1|1138855_1139938_+	lysine-2,3-aminomutase-like protein	NA	NA	NA	NA	NA
WP_014531779.1|1141272_1141569_-	hypothetical protein	NA	NA	NA	NA	NA
WP_017266853.1|1142108_1142288_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014531100.1|1142274_1144350_+	recombinase family protein	NA	D2KRD2	Lactobacillus_phage	22.7	1.5e-08
WP_012477217.1|1145841_1146189_-	IS66 family insertion sequence element accessory protein TnpB	NA	A0A0P0ZDM8	Stx2-converting_phage	57.1	1.7e-26
WP_012477218.1|1146185_1146560_-	IS66 family insertion sequence hypothetical protein	NA	NA	NA	NA	NA
WP_041862567.1|1146704_1147943_+	ATP-grasp domain-containing protein	NA	NA	NA	NA	NA
WP_014531784.1|1148473_1149670_+|transposase	IS256-like element ISRm5 family transposase	transposase	A0A0K2CZ57	Paenibacillus_phage	43.6	4.5e-74
>prophage 6
NC_017327	Sinorhizobium meliloti SM11 plasmid pSmeSM11c, complete sequence	1633319	1161270	1169597	1633319		uncultured_virus(33.33%)	7	NA	NA
WP_014531795.1|1161270_1162149_+	LysR family transcriptional regulator	NA	Q6JIH3	Burkholderia_virus	27.6	5.6e-21
WP_014531797.1|1162740_1163190_-	MucR family transcriptional regulator	NA	A0A1P8VVG0	Erythrobacter_phage	48.3	3.8e-18
WP_010967386.1|1163559_1163721_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010968824.1|1164275_1164572_+	co-chaperone GroES	NA	A0A221S4G8	uncultured_virus	58.7	8.4e-22
WP_013845862.1|1164648_1166286_+	chaperonin GroEL	NA	A0A219YK78	uncultured_virus	63.3	6.7e-177
WP_003535606.1|1168473_1168677_+	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	51.7	1.1e-07
WP_107592306.1|1169228_1169597_-	DUF4055 domain-containing protein	NA	A0A0A0RTF5	Escherichia_phage	33.9	5.0e-08
>prophage 1
NC_017326	Sinorhizobium meliloti SM11 plasmid pSmeSM11d, complete sequence	1632395	269712	278547	1632395		Escherichia_phage(50.0%)	9	NA	NA
WP_010976194.1|269712_270990_-	four-carbon acid sugar kinase family protein	NA	A0A077SLJ7	Escherichia_phage	42.8	3.7e-74
WP_014530159.1|270993_271770_-	hydroxypyruvate isomerase family protein	NA	NA	NA	NA	NA
WP_041862621.1|271781_272687_-	NAD(P)-dependent oxidoreductase	NA	A0A077SLF7	Escherichia_phage	49.3	5.1e-70
WP_014530161.1|272829_273834_+	LacI family DNA-binding transcriptional regulator	NA	C6ZCU4	Enterobacteria_phage	26.5	3.7e-13
WP_014530162.1|273850_274528_+	aldolase	NA	A0A077SK32	Escherichia_phage	50.2	1.5e-50
WP_014530163.1|274827_275592_+	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014530164.1|275636_276620_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_014530165.1|276621_277398_+	SDR family oxidoreductase	NA	Q06VL0	Trichoplusia_ni_ascovirus	28.6	7.6e-06
WP_014530166.1|277482_278547_+	sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC	NA	G3M9Y6	Bacillus_virus	33.0	4.5e-25
