assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000215895.1_ASM21589v1	NC_017579	Shewanella baltica OS117, complete sequence	1	1719663-1719769	1	CRISPRCasFinder	no		csa3,DEDDh,PD-DExK,cas3,WYL,DinG,RT,TnsE_C	Orphan	ATCAATTGCTGGAGCATTGTGATGTTAGTT	30	0	0	NA	NA	NA	1	1	Orphan	csa3,DEDDh,PD-DExK,cas3,WYL,DinG,RT,TnsE_C	NA|81aa|up_1|NC_017579.1_1716394_1716637_-,NA|262aa|down_5|NC_017579.1_1729326_1730112_+,NA|152aa|down_9|NC_017579.1_1733371_1733827_-	NA|238aa|up_9|NC_017579.1_1705924_1706638_-	TIGR02453, conserved_hypothetical_protein, TIGR02453 family protein	NA|740aa|up_8|NC_017579.1_1706976_1709196_+	TIGR01785, Heme/hemopexin_utilization_protein_C, TonB-dependent heme/hemoglobin receptor family protein	NA|188aa|up_7|NC_017579.1_1709331_1709895_+	pfam03831, PhnA, PhnA domain	NA|402aa|up_6|NC_017579.1_1710002_1711208_-	cd17410, MFS_CynX_like, Cyanate transport protein CynX and similar proteins of the Major Facilitator Superfamily of transporters	NA|213aa|up_5|NC_017579.1_1711437_1712076_+	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|338aa|up_4|NC_017579.1_1712239_1713253_+	cd06251, M14_ASTE_ASPA-like, Peptidase M14 Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA)-like; uncharacterized subgroup	NA|676aa|up_3|NC_017579.1_1713395_1715423_-	COG0840, Tar, Methyl-accepting chemotaxis protein [Cell motility and secretion / Signal transduction mechanisms]	NA|209aa|up_2|NC_017579.1_1715631_1716258_+	COG0179, MhpD, 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) [Secondary metabolites biosynthesis, transport, and catabolism]	NA|81aa|up_1|NC_017579.1_1716394_1716637_-	NA	NA|911aa|up_0|NC_017579.1_1716887_1719620_-	cd06569, GH20_Sm-chitobiase-like, The chitobiase of Serratia marcescens is a beta-N-1,4-acetylhexosaminidase with a glycosyl hydrolase family 20 (GH20) domain that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin	NA|433aa|down_0|NC_017579.1_1720608_1721907_-	cd17394, MFS_FucP_like, Fucose permease and similar proteins of the Major Facilitator Superfamily of transporters	NA|325aa|down_1|NC_017579.1_1722446_1723421_+	cd06976, cupin_MtlR-like_N, AraC/XylS family transcriptional regulators similar to MtlR, N-terminal cupin domain	NA|502aa|down_2|NC_017579.1_1723430_1724936_-	pfam04820, Trp_halogenase, Tryptophan halogenase	NA|879aa|down_3|NC_017579.1_1725003_1727640_-	TIGR01782, TonB-dependent_receptor, TonB-dependent receptor	NA|376aa|down_4|NC_017579.1_1727984_1729112_+	cd10946, CE4_Mll8295_like, Putative catalytic NodB homology domain of uncharacterized Mll8295 protein encoded from Rhizobium loti and its bacterial homologs	NA|262aa|down_5|NC_017579.1_1729326_1730112_+	NA	NA|141aa|down_6|NC_017579.1_1730266_1730689_+	pfam11528, DUF3224, Protein of unknown function (DUF3224)	NA|441aa|down_7|NC_017579.1_1731007_1732330_+	pfam13006, Nterm_IS4, Insertion element 4 transposase N-terminal	NA|185aa|down_8|NC_017579.1_1732485_1733040_-	COG2823, OsmY, Predicted periplasmic or secreted lipoprotein [General function prediction only]	NA|152aa|down_9|NC_017579.1_1733371_1733827_-	NA
GCF_000215895.1_ASM21589v1	NC_017579	Shewanella baltica OS117, complete sequence	2	5176896-5176971	2	CRISPRCasFinder	no		csa3,DEDDh,PD-DExK,cas3,WYL,DinG,RT,TnsE_C	Orphan	TGTACAAACTTTATTATTCCAAAA	24	0	0	NA	NA	NA	1	1	Orphan	csa3,DEDDh,PD-DExK,cas3,WYL,DinG,RT,TnsE_C	NA|110aa|up_8|NC_017579.1_5164862_5165192_+,NA|124aa|up_6|NC_017579.1_5165939_5166311_-,NA|291aa|up_2|NC_017579.1_5172215_5173088_-,NA	NA|519aa|up_9|NC_017579.1_5161450_5163006_+	pfam00665, rve, Integrase core domain	NA|110aa|up_8|NC_017579.1_5164862_5165192_+	NA	NA|73aa|up_7|NC_017579.1_5165185_5165404_+	pfam05717, TnpB_IS66, IS66 Orf2 like protein	NA|124aa|up_6|NC_017579.1_5165939_5166311_-	NA	NA|501aa|up_5|NC_017579.1_5167699_5169202_-	pfam00665, rve, Integrase core domain	NA|478aa|up_4|NC_017579.1_5169335_5170769_-	pfam15978, TnsD, Tn7-like transposition protein D	NA|479aa|up_3|NC_017579.1_5170779_5172216_-	pfam13401, AAA_22, AAA domain	NA|291aa|up_2|NC_017579.1_5172215_5173088_-	NA	NA|519aa|up_1|NC_017579.1_5173208_5174764_+	pfam00665, rve, Integrase core domain	NA|276aa|up_0|NC_017579.1_5176023_5176851_-	pfam08722, Tn7_Tnp_TnsA_N, TnsA endonuclease N terminal	NA|395aa|down_0|NC_017579.1_5176976_5178161_-	pfam03486, HI0933_like, HI0933-like protein	NA|339aa|down_1|NC_017579.1_5178351_5179368_-	PRK00094, gpsA, NAD(P)H-dependent glycerol-3-phosphate dehydrogenase	NA|162aa|down_2|NC_017579.1_5179372_5179858_-	PRK05751, PRK05751, preprotein translocase subunit SecB; Validated	NA|145aa|down_3|NC_017579.1_5180153_5180588_-	cd00158, RHOD, Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese protein	NA|515aa|down_4|NC_017579.1_5180855_5182400_+	PRK05434, PRK05434, 2,3-bisphosphoglycerate-independent phosphoglycerate mutase	NA|378aa|down_5|NC_017579.1_5182410_5183544_+	PRK11637, PRK11637, AmiB activator; Provisional	NA|402aa|down_6|NC_017579.1_5183576_5184782_+	COG0793, Prc, Periplasmic protease [Cell envelope biogenesis, outer membrane]	NA|252aa|down_7|NC_017579.1_5184794_5185550_+	pfam04748, Polysacc_deac_2, Divergent polysaccharide deacetylase	NA|152aa|down_8|NC_017579.1_5185524_5185980_-	PRK11014, PRK11014, HTH-type transcriptional repressor NsrR	NA|85aa|down_9|NC_017579.1_5186002_5186257_-	COG0727, COG0727, Predicted Fe-S-cluster oxidoreductase [General function prediction only]
GCF_000215895.1_ASM21589v1	NC_017577	Shewanella baltica OS117 plasmid pSBAL11701, complete sequence	1	37093-37232	1	CRISPRCasFinder	no			Orphan	TTTTTAAGCGTTAATACCCGACAGTTTTTAAG	32	0	0	NA	NA	NA	1	1	Orphan	csa3,DEDDh,PD-DExK,cas3,WYL,DinG,RT,TnsE_C	NA|178aa|up_9|NC_017577.1_27939_28473_-,NA|251aa|up_8|NC_017577.1_28668_29421_-,NA|212aa|up_7|NC_017577.1_29524_30160_-,NA|116aa|up_6|NC_017577.1_30709_31057_-,NA|207aa|up_4|NC_017577.1_31664_32285_+,NA|49aa|up_3|NC_017577.1_32768_32915_-,NA|135aa|down_2|NC_017577.1_40214_40619_+,NA|100aa|down_5|NC_017577.1_42189_42489_-,NA|75aa|down_6|NC_017577.1_42687_42912_-,NA|221aa|down_7|NC_017577.1_43323_43986_-,NA|374aa|down_9|NC_017577.1_45323_46445_-	NA|178aa|up_9|NC_017577.1_27939_28473_-	NA	NA|251aa|up_8|NC_017577.1_28668_29421_-	NA	NA|212aa|up_7|NC_017577.1_29524_30160_-	NA	NA|116aa|up_6|NC_017577.1_30709_31057_-	NA	NA|148aa|up_5|NC_017577.1_31156_31600_+	cd01286, deoxycytidylate_deaminase, Deoxycytidylate deaminase domain	NA|207aa|up_4|NC_017577.1_31664_32285_+	NA	NA|49aa|up_3|NC_017577.1_32768_32915_-	NA	NA|346aa|up_2|NC_017577.1_32991_34029_-	cd16394, sopB_N, N-terminal domain of sopB protein, which promotes proper partitioning of F1 plasmid	NA|403aa|up_1|NC_017577.1_34031_35240_-	COG1192, Soj, ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]	NA|318aa|up_0|NC_017577.1_35538_36492_+	COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]	NA|382aa|down_0|NC_017577.1_37645_38791_-	pfam01051, Rep_3, Initiator Replication protein	NA|172aa|down_1|NC_017577.1_39461_39977_+	TIGR00621, Single-stranded_DNA-binding_protein, single stranded DNA-binding protein (ssb)	NA|135aa|down_2|NC_017577.1_40214_40619_+	NA	NA|139aa|down_3|NC_017577.1_40924_41341_-	smart00530, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|88aa|down_4|NC_017577.1_41647_41911_-	COG2026, RelE, Cytotoxic translational repressor of toxin-antitoxin stability system [Translation, ribosomal structure and biogenesis / Cell division and chromosome partitioning]	NA|100aa|down_5|NC_017577.1_42189_42489_-	NA	NA|75aa|down_6|NC_017577.1_42687_42912_-	NA	NA|221aa|down_7|NC_017577.1_43323_43986_-	NA	NA|444aa|down_8|NC_017577.1_43990_45322_-	cd16430, TraB, TraB is a homolog of VirB10 which forms part of core complex in Type IV secretion system (T4SS)	NA|374aa|down_9|NC_017577.1_45323_46445_-	NA
GCF_000215895.1_ASM21589v1	NC_017577	Shewanella baltica OS117 plasmid pSBAL11701, complete sequence	2	37336-37618	2	CRISPRCasFinder	no			Orphan	TTTTTAAGCGTTAATACCCGACAGTTTTTAAG	32	1	1	37475-37514	NC_017577.1_37595-37634	NA	3	3	Orphan	csa3,DEDDh,PD-DExK,cas3,WYL,DinG,RT,TnsE_C	NA|178aa|up_9|NC_017577.1_27939_28473_-,NA|251aa|up_8|NC_017577.1_28668_29421_-,NA|212aa|up_7|NC_017577.1_29524_30160_-,NA|116aa|up_6|NC_017577.1_30709_31057_-,NA|207aa|up_4|NC_017577.1_31664_32285_+,NA|49aa|up_3|NC_017577.1_32768_32915_-,NA|135aa|down_2|NC_017577.1_40214_40619_+,NA|100aa|down_5|NC_017577.1_42189_42489_-,NA|75aa|down_6|NC_017577.1_42687_42912_-,NA|221aa|down_7|NC_017577.1_43323_43986_-,NA|374aa|down_9|NC_017577.1_45323_46445_-	NA|178aa|up_9|NC_017577.1_27939_28473_-	NA	NA|251aa|up_8|NC_017577.1_28668_29421_-	NA	NA|212aa|up_7|NC_017577.1_29524_30160_-	NA	NA|116aa|up_6|NC_017577.1_30709_31057_-	NA	NA|148aa|up_5|NC_017577.1_31156_31600_+	cd01286, deoxycytidylate_deaminase, Deoxycytidylate deaminase domain	NA|207aa|up_4|NC_017577.1_31664_32285_+	NA	NA|49aa|up_3|NC_017577.1_32768_32915_-	NA	NA|346aa|up_2|NC_017577.1_32991_34029_-	cd16394, sopB_N, N-terminal domain of sopB protein, which promotes proper partitioning of F1 plasmid	NA|403aa|up_1|NC_017577.1_34031_35240_-	COG1192, Soj, ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]	NA|318aa|up_0|NC_017577.1_35538_36492_+	COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]	NA|382aa|down_0|NC_017577.1_37645_38791_-	pfam01051, Rep_3, Initiator Replication protein	NA|172aa|down_1|NC_017577.1_39461_39977_+	TIGR00621, Single-stranded_DNA-binding_protein, single stranded DNA-binding protein (ssb)	NA|135aa|down_2|NC_017577.1_40214_40619_+	NA	NA|139aa|down_3|NC_017577.1_40924_41341_-	smart00530, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|88aa|down_4|NC_017577.1_41647_41911_-	COG2026, RelE, Cytotoxic translational repressor of toxin-antitoxin stability system [Translation, ribosomal structure and biogenesis / Cell division and chromosome partitioning]	NA|100aa|down_5|NC_017577.1_42189_42489_-	NA	NA|75aa|down_6|NC_017577.1_42687_42912_-	NA	NA|221aa|down_7|NC_017577.1_43323_43986_-	NA	NA|444aa|down_8|NC_017577.1_43990_45322_-	cd16430, TraB, TraB is a homolog of VirB10 which forms part of core complex in Type IV secretion system (T4SS)	NA|374aa|down_9|NC_017577.1_45323_46445_-	NA
GCF_000215895.1_ASM21589v1	NC_017577	Shewanella baltica OS117 plasmid pSBAL11701, complete sequence	3	51001-51095	3	CRISPRCasFinder	no			Orphan	AGTGTTCATCGTTGTTAGTTACTGACTGAGAA	32	0	0	NA	NA	NA	1	1	Orphan	csa3,DEDDh,PD-DExK,cas3,WYL,DinG,RT,TnsE_C	NA|100aa|up_9|NC_017577.1_42189_42489_-,NA|75aa|up_8|NC_017577.1_42687_42912_-,NA|221aa|up_7|NC_017577.1_43323_43986_-,NA|374aa|up_5|NC_017577.1_45323_46445_-,NA|95aa|up_3|NC_017577.1_47195_47480_-,NA|132aa|up_2|NC_017577.1_47566_47962_-,NA|230aa|down_0|NC_017577.1_53472_54162_-,NA|140aa|down_1|NC_017577.1_54234_54654_-,NA|106aa|down_3|NC_017577.1_56545_56863_+,NA|312aa|down_7|NC_017577.1_64564_65500_+,NA|182aa|down_8|NC_017577.1_65510_66056_+	NA|100aa|up_9|NC_017577.1_42189_42489_-	NA	NA|75aa|up_8|NC_017577.1_42687_42912_-	NA	NA|221aa|up_7|NC_017577.1_43323_43986_-	NA	NA|444aa|up_6|NC_017577.1_43990_45322_-	cd16430, TraB, TraB is a homolog of VirB10 which forms part of core complex in Type IV secretion system (T4SS)	NA|374aa|up_5|NC_017577.1_45323_46445_-	NA	NA|219aa|up_4|NC_017577.1_46528_47185_-	pfam05309, TraE, TraE protein	NA|95aa|up_3|NC_017577.1_47195_47480_-	NA	NA|132aa|up_2|NC_017577.1_47566_47962_-	NA	NA|212aa|up_1|NC_017577.1_48118_48754_-	pfam14348, DUF4400, Domain of unknown function (DUF4400)	NA|625aa|up_0|NC_017577.1_48765_50640_-	TIGR03743, SXT_TraD, conjugative coupling factor TraD, SXT/TOL subfamily	NA|230aa|down_0|NC_017577.1_53472_54162_-	NA	NA|140aa|down_1|NC_017577.1_54234_54654_-	NA	NA|358aa|down_2|NC_017577.1_55458_56532_+	TIGR03739, PRTRC_D, PRTRC system protein D	NA|106aa|down_3|NC_017577.1_56545_56863_+	NA	NA|322aa|down_4|NC_017577.1_56990_57956_+	TIGR02740, putative_pilus_assembly_and_synthesis_protein, TraF-like protein	NA|465aa|down_5|NC_017577.1_57955_59350_+	pfam06122, TraH, Conjugative relaxosome accessory transposon protein	NA|1693aa|down_6|NC_017577.1_59352_64431_+	pfam07916, TraG_N, TraG-like protein, N-terminal region	NA|312aa|down_7|NC_017577.1_64564_65500_+	NA	NA|182aa|down_8|NC_017577.1_65510_66056_+	NA	NA|303aa|down_9|NC_017577.1_66069_66978_-	pfam14882, PHINT_rpt, Phage-integrase repeat unit
GCF_000215895.1_ASM21589v1	NC_017577	Shewanella baltica OS117 plasmid pSBAL11701, complete sequence	4	63720-63818	4	CRISPRCasFinder	no			Orphan	GGCGCCAAGTGGTTCGGCTTCGAC	24	0	0	NA	NA	NA	1	1	Orphan	csa3,DEDDh,PD-DExK,cas3,WYL,DinG,RT,TnsE_C	NA|132aa|up_9|NC_017577.1_47566_47962_-,NA|230aa|up_5|NC_017577.1_53472_54162_-,NA|140aa|up_4|NC_017577.1_54234_54654_-,NA|106aa|up_2|NC_017577.1_56545_56863_+,NA|312aa|down_0|NC_017577.1_64564_65500_+,NA|182aa|down_1|NC_017577.1_65510_66056_+,NA|290aa|down_3|NC_017577.1_67115_67985_-,NA|245aa|down_5|NC_017577.1_68909_69644_+,NA|101aa|down_6|NC_017577.1_69708_70011_-,NA|173aa|down_7|NC_017577.1_70035_70554_+,NA|104aa|down_8|NC_017577.1_70562_70874_-	NA|132aa|up_9|NC_017577.1_47566_47962_-	NA	NA|212aa|up_8|NC_017577.1_48118_48754_-	pfam14348, DUF4400, Domain of unknown function (DUF4400)	NA|625aa|up_7|NC_017577.1_48765_50640_-	TIGR03743, SXT_TraD, conjugative coupling factor TraD, SXT/TOL subfamily	NA|947aa|up_6|NC_017577.1_50632_53473_-	pfam07514, TraI_2, Putative helicase	NA|230aa|up_5|NC_017577.1_53472_54162_-	NA	NA|140aa|up_4|NC_017577.1_54234_54654_-	NA	NA|358aa|up_3|NC_017577.1_55458_56532_+	TIGR03739, PRTRC_D, PRTRC system protein D	NA|106aa|up_2|NC_017577.1_56545_56863_+	NA	NA|322aa|up_1|NC_017577.1_56990_57956_+	TIGR02740, putative_pilus_assembly_and_synthesis_protein, TraF-like protein	NA|465aa|up_0|NC_017577.1_57955_59350_+	pfam06122, TraH, Conjugative relaxosome accessory transposon protein	NA|312aa|down_0|NC_017577.1_64564_65500_+	NA	NA|182aa|down_1|NC_017577.1_65510_66056_+	NA	NA|303aa|down_2|NC_017577.1_66069_66978_-	pfam14882, PHINT_rpt, Phage-integrase repeat unit	NA|290aa|down_3|NC_017577.1_67115_67985_-	NA	NA|242aa|down_4|NC_017577.1_68076_68802_+	cd07185, OmpA_C-like, Peptidoglycan binding domains similar to the C-terminal domain of outer-membrane protein OmpA	NA|245aa|down_5|NC_017577.1_68909_69644_+	NA	NA|101aa|down_6|NC_017577.1_69708_70011_-	NA	NA|173aa|down_7|NC_017577.1_70035_70554_+	NA	NA|104aa|down_8|NC_017577.1_70562_70874_-	NA	NA|794aa|down_9|NC_017577.1_70957_73339_+	pfam13750, Big_3_3, Bacterial Ig-like domain (group 3)
