assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000214395.1_ASM21439v1	NC_015563	Delftia sp. Cs1-4, complete sequence	1	2527669-2527770	1	CRISPRCasFinder	no		DinG,DEDDh,RT,WYL,Cas9_archaeal,cas3,csa3,PD-DExK,cas6f,cas7f,cas5f,cas8f,cas3-cas2,cas1	Orphan	GCAGGCCCGCAGCCAGGGCCACGC	24	0	0	NA	NA	NA	1	1	Orphan	DinG,DEDDh,RT,WYL,Cas9_archaeal,cas3,csa3,PD-DExK,cas6f,cas7f,cas5f,cas8f,cas3-cas2,cas1	NA,NA	NA|120aa|up_9|NC_015563.1_2514832_2515192_+	PRK05185, rplT, 50S ribosomal protein L20; Provisional	NA|351aa|up_8|NC_015563.1_2515302_2516355_+	PRK00488, pheS, phenylalanyl-tRNA synthetase subunit alpha; Validated	NA|816aa|up_7|NC_015563.1_2516430_2518878_+	PRK00629, pheT, phenylalanyl-tRNA synthetase subunit beta; Reviewed	NA|111aa|up_6|NC_015563.1_2518911_2519244_+	PRK00285, ihfA, integration host factor subunit alpha; Reviewed	NA|137aa|up_5|NC_015563.1_2519432_2519843_+	cd04765, HTH_MlrA-like_sg2, Helix-Turn-Helix DNA binding domain of putative MlrA-like transcription regulators	NA|333aa|up_4|NC_015563.1_2520050_2521049_-	PRK11139, PRK11139, DNA-binding transcriptional activator GcvA; Provisional	NA|1018aa|up_3|NC_015563.1_2521102_2524156_+	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion]	NA|117aa|up_2|NC_015563.1_2524557_2524908_+	cd04496, SSB_OBF, SSB_OBF: A subfamily of OB folds similar to the OB fold of ssDNA-binding protein (SSB)	NA|273aa|up_1|NC_015563.1_2525042_2525861_+	COG1464, NlpA, ABC-type metal ion transport system, periplasmic component/surface antigen [Inorganic ion transport and metabolism]	NA|242aa|up_0|NC_015563.1_2526045_2526771_-	cd02136, PnbA_NfnB-like, nitroreductase similar to Mycobacterium smegmatis NfnB	NA|511aa|down_0|NC_015563.1_2527971_2529504_-	cd17633, AFD_YhfT-like, fatty acid-CoA ligase VraA	NA|198aa|down_1|NC_015563.1_2529496_2530090_-	COG1268, BioY, Uncharacterized conserved protein [General function prediction only]	NA|198aa|down_2|NC_015563.1_2530160_2530754_-	COG0619, CbiQ, ABC-type cobalt transport system, permease component CbiQ and related transporters [Inorganic ion transport and metabolism]	NA|247aa|down_3|NC_015563.1_2530771_2531512_-	cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding cassette component of cobalt transport system	NA|294aa|down_4|NC_015563.1_2531898_2532780_+	PRK11153, metN, DL-methionine transporter ATP-binding subunit; Provisional	NA|222aa|down_5|NC_015563.1_2532831_2533497_+	COG2011, AbcD, ABC-type metal ion transport system, permease component [Inorganic ion transport and metabolism]	NA|277aa|down_6|NC_015563.1_2533559_2534390_+	cd13599, PBP2_lipoprotein_Gna1946, The membrane-associated lipoprotein Gna1946 from Neisseria meningitidis; the type 2 periplasmic binding protein fold	NA|183aa|down_7|NC_015563.1_2534485_2535034_+	COG0431, COG0431, Predicted flavoprotein [General function prediction only]	NA|163aa|down_8|NC_015563.1_2535125_2535614_-	TIGR01347, sucB, 2-oxoglutarate dehydrogenase complex dihydrolipoamide succinyltransferase (E2 component)	NA|372aa|down_9|NC_015563.1_2535877_2536993_+	cd14953, NHL_like_1, Uncharacterized NHL-repeat domain in bacterial proteins
GCF_000214395.1_ASM21439v1	NC_015563	Delftia sp. Cs1-4, complete sequence	2	4423497-4423658	1	CRT	no		DinG,DEDDh,RT,WYL,Cas9_archaeal,cas3,csa3,PD-DExK,cas6f,cas7f,cas5f,cas8f,cas3-cas2,cas1	Orphan	TGTGCCCCCGCCAGTGCC	18	0	0	NA	NA	NA	3	3	Orphan	DinG,DEDDh,RT,WYL,Cas9_archaeal,cas3,csa3,PD-DExK,cas6f,cas7f,cas5f,cas8f,cas3-cas2,cas1	NA,NA|78aa|down_0|NC_015563.1_4424705_4424939_-,NA|72aa|down_1|NC_015563.1_4425012_4425228_-,NA|47aa|down_2|NC_015563.1_4425227_4425368_-,NA|71aa|down_3|NC_015563.1_4425364_4425577_-,NA|128aa|down_4|NC_015563.1_4425579_4425963_-,NA|87aa|down_6|NC_015563.1_4427966_4428227_+	NA|246aa|up_9|NC_015563.1_4410778_4411516_+	PRK09468, ompR, osmolarity response regulator; Provisional	NA|501aa|up_8|NC_015563.1_4411759_4413262_+	PRK09467, envZ, osmolarity sensor protein; Provisional	NA|160aa|up_7|NC_015563.1_4413365_4413845_-	pfam02542, YgbB, YgbB family	NA|277aa|up_6|NC_015563.1_4413861_4414692_-	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase	NA|1165aa|up_5|NC_015563.1_4414853_4418348_+	COG1197, Mfd, Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]	NA|222aa|up_4|NC_015563.1_4418365_4419031_+	COG3235, COG3235, Predicted membrane protein [Function unknown]	NA|238aa|up_3|NC_015563.1_4419110_4419824_+	cd07500, HAD_PSP, phosphoserine phosphatase (PSP), similar to Methanococcus Jannaschii PSP and Saccharomyces cerevisiae SER2p	NA|205aa|up_2|NC_015563.1_4419932_4420547_-	cd03768, SR_ResInv, Serine Recombinase (SR) family, Resolvase and Invertase subfamily, catalytic domain; members contain a C-terminal DNA binding domain	NA|455aa|up_1|NC_015563.1_4421333_4422698_-	PHA00350, PHA00350, putative assembly protein	NA|130aa|up_0|NC_015563.1_4422694_4423084_-	PHA01081, PHA01081, putative minor coat protein	NA|78aa|down_0|NC_015563.1_4424705_4424939_-	NA	NA|72aa|down_1|NC_015563.1_4425012_4425228_-	NA	NA|47aa|down_2|NC_015563.1_4425227_4425368_-	NA	NA|71aa|down_3|NC_015563.1_4425364_4425577_-	NA	NA|128aa|down_4|NC_015563.1_4425579_4425963_-	NA	NA|403aa|down_5|NC_015563.1_4425973_4427182_-	TIGR01629, Replication-associated_protein_G2P, phage/plasmid replication protein, gene II/X family	NA|87aa|down_6|NC_015563.1_4427966_4428227_+	NA	NA|193aa|down_7|NC_015563.1_4428482_4429061_+	PRK12270, kgd, multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit	NA|73aa|down_8|NC_015563.1_4429127_4429346_-	pfam12843, QSregVF_b, Putative quorum-sensing-regulated virulence factor	NA|262aa|down_9|NC_015563.1_4429542_4430328_+	cd13597, PBP2_lipoprotein_Tp32, The substrate-binding domain of the 32-kilodalton lipoprotein (Tp32) from Treponema pallidum binds L-methionine; the type 2 periplasmic-binding protein fold
GCF_000214395.1_ASM21439v1	NC_015563	Delftia sp. Cs1-4, complete sequence	3	4895219-4897497	2,2,1,2	CRISPRCasFinder,CRT,PILER-CR,PILER-CR	no		DinG,DEDDh,RT,WYL,Cas9_archaeal,cas3,csa3,PD-DExK,cas6f,cas7f,cas5f,cas8f,cas3-cas2,cas1	Orphan	GTTTCAATCCACGCGCCCGCACGGGGCGCGAC,GTTTCAATCCACGCGCCCGCACGGGGCGCGAC,GTTTCAATCCACGCGCCCGCACGGGGCGCGAC,TGGGGTTTCAATCCACGCGCCCGCACGGGGCGCGACC	32,32,32,37	1	1	4895582-4895616	NC_015563.1_4948671-4948637	I-C:I-C:I-C:I-C	34,34,26,26	34	Orphan	DinG,DEDDh,RT,WYL,Cas9_archaeal,cas3,csa3,PD-DExK,cas6f,cas7f,cas5f,cas8f,cas3-cas2,cas1	NA|136aa|up_9|NC_015563.1_4880535_4880943_-,NA|103aa|up_5|NC_015563.1_4884278_4884587_+,NA	NA|136aa|up_9|NC_015563.1_4880535_4880943_-	NA	NA|247aa|up_8|NC_015563.1_4881075_4881816_+	pfam02586, SRAP, SOS response associated peptidase (SRAP)	NA|261aa|up_7|NC_015563.1_4881845_4882628_-	COG2602, COG2602, Beta-lactamase class D [Defense mechanisms]	NA|447aa|up_6|NC_015563.1_4882875_4884216_+	COG0004, AmtB, Ammonia permease [Inorganic ion transport and metabolism]	NA|103aa|up_5|NC_015563.1_4884278_4884587_+	NA	NA|543aa|up_4|NC_015563.1_4884599_4886228_-	PRK11767, PRK11767, SpoVR family protein; Provisional	NA|423aa|up_3|NC_015563.1_4886224_4887493_-	pfam04285, DUF444, Protein of unknown function (DUF444)	NA|641aa|up_2|NC_015563.1_4887539_4889462_-	PRK15455, PRK15455, PrkA family serine protein kinase; Provisional	NA|1128aa|up_1|NC_015563.1_4889834_4893218_+	PRK11281, PRK11281, mechanosensitive channel MscK	NA|576aa|up_0|NC_015563.1_4893272_4895000_-	PRK15048, PRK15048, methyl-accepting chemotaxis protein II; Provisional	NA|470aa|down_0|NC_015563.1_4897781_4899191_-	PRK11040, PRK11040, peptidase PmbA; Provisional	NA|226aa|down_1|NC_015563.1_4899257_4899935_+	cd16331, YjgA-like, uncharacterized proteins similar to Escherichia coli YjgA	NA|202aa|down_2|NC_015563.1_4899927_4900533_+	PRK09417, mogA, molybdenum cofactor biosynthesis protein MogA; Provisional	NA|404aa|down_3|NC_015563.1_4900737_4901949_+	cd06327, PBP1_SBP-like, periplasmic substrate-binding domain of active transport proteins (substrate binding proteins or SBPs)	NA|394aa|down_4|NC_015563.1_4902128_4903310_+	PRK11578, PRK11578, macrolide transporter subunit MacA; Provisional	NA|649aa|down_5|NC_015563.1_4903312_4905259_+	PRK10535, PRK10535, macrolide ABC transporter ATP-binding protein/permease MacB	NA|464aa|down_6|NC_015563.1_4905260_4906652_+	TIGR01845, Outer_membrane_protein_OprM, efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family	NA|351aa|down_7|NC_015563.1_4906677_4907730_-	cd00342, gram_neg_porins, Porins form aqueous channels for the diffusion of small hydrophillic molecules across the outer membrane	NA|648aa|down_8|NC_015563.1_4908064_4910008_-	PRK09284, PRK09284, thiamine biosynthesis protein ThiC; Provisional	NA|221aa|down_9|NC_015563.1_4910462_4911125_-	cd02136, PnbA_NfnB-like, nitroreductase similar to Mycobacterium smegmatis NfnB
GCF_000214395.1_ASM21439v1	NC_015563	Delftia sp. Cs1-4, complete sequence	4	5199322-5199517	3	PILER-CR	no		DinG,DEDDh,RT,WYL,Cas9_archaeal,cas3,csa3,PD-DExK,cas6f,cas7f,cas5f,cas8f,cas3-cas2,cas1	Orphan	TGGTGAACACCGTGGCCGGCGACAACGG	28	0	0	NA	NA	NA	4	4	Orphan	DinG,DEDDh,RT,WYL,Cas9_archaeal,cas3,csa3,PD-DExK,cas6f,cas7f,cas5f,cas8f,cas3-cas2,cas1	NA|114aa|up_6|NC_015563.1_5187069_5187411_+,NA|130aa|up_2|NC_015563.1_5191021_5191411_+,NA	NA|482aa|up_9|NC_015563.1_5183887_5185333_+	cd17371, MFS_MucK, Cis,cis-muconate transport protein and similar proteins of the Major Facilitator Superfamily	NA|259aa|up_8|NC_015563.1_5185340_5186117_+	cd05333, BKR_SDR_c, beta-Keto acyl carrier protein reductase (BKR), involved in Type II FAS, classical (c) SDRs	NA|253aa|up_7|NC_015563.1_5186128_5186887_+	PRK05653, fabG, 3-oxoacyl-ACP reductase FabG	NA|114aa|up_6|NC_015563.1_5187069_5187411_+	NA	NA|371aa|up_5|NC_015563.1_5187407_5188520_+	COG0523, COG0523, Putative GTPases (G3E family) [General function prediction only]	NA|397aa|up_4|NC_015563.1_5188543_5189734_+	cd13588, PBP2_polyamine_1, The periplasmic-binding component of an uncharacterized ABC transporter involved in uptake of polyamines; contains the type 2 periplasmic binding fold	NA|359aa|up_3|NC_015563.1_5189816_5190893_+	COG1802, GntR, Transcriptional regulators [Transcription]	NA|130aa|up_2|NC_015563.1_5191021_5191411_+	NA	NA|505aa|up_1|NC_015563.1_5191472_5192987_-	pfam03734, YkuD, L,D-transpeptidase catalytic domain	NA|473aa|up_0|NC_015563.1_5192986_5194405_-	PRK05035, PRK05035, electron transport complex protein RnfC; Provisional	NA|175aa|down_0|NC_015563.1_5199882_5200407_+	TIGR02802, Peptidoglycan-associated_lipoprotein, peptidoglycan-associated lipoprotein	NA|1058aa|down_1|NC_015563.1_5200543_5203717_+	COG0770, MurF, UDP-N-acetylmuramyl pentapeptide synthase [Cell envelope biogenesis, outer membrane]	NA|627aa|down_2|NC_015563.1_5203816_5205697_+	COG2274, SunT, ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]	NA|459aa|down_3|NC_015563.1_5205693_5207070_+	TIGR01843, Hemolysin_secretion_protein_D_plasmid, type I secretion membrane fusion protein, HlyD family	NA|578aa|down_4|NC_015563.1_5207069_5208803_+	TIGR01844, Proteases_secretion_protein_PrtF, type I secretion outer membrane protein, TolC family	NA|59aa|down_5|NC_015563.1_5208908_5209085_+	COG3847, Flp, Flp pilus assembly protein, pilin Flp [Intracellular trafficking and secretion]	NA|59aa|down_6|NC_015563.1_5209176_5209353_+	COG3847, Flp, Flp pilus assembly protein, pilin Flp [Intracellular trafficking and secretion]	NA|190aa|down_7|NC_015563.1_5209355_5209925_+	COG4960, CpaA, Flp pilus assembly protein, protease CpaA [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]	NA|349aa|down_8|NC_015563.1_5210117_5211164_+	TIGR03177, pilus_cpaB, Flp pilus assembly protein CpaB	NA|502aa|down_9|NC_015563.1_5211189_5212695_+	COG4964, CpaC, Flp pilus assembly protein, secretin CpaC [Intracellular trafficking and secretion]
GCF_000214395.1_ASM21439v1	NC_015563	Delftia sp. Cs1-4, complete sequence	5	5963276-5967067	3,3,4,5,6,4	CRISPRCasFinder,CRT,PILER-CR,PILER-CR,PILER-CR,CRT	no	cas6f,cas7f,cas5f,cas8f,cas3-cas2,cas1	DinG,DEDDh,RT,WYL,Cas9_archaeal,cas3,csa3,PD-DExK,cas6f,cas7f,cas5f,cas8f,cas3-cas2,cas1	Type I-F	TTTCTGAGCTGCCTACGCGGCAGCGAAC,TTTCTGAGCTGCCTATGCGGCAGCGAAC,TTTTCTGAGCTGCCTATGCGGCAGCGAACCA,TCATCCCTTTTCTGAGCTGCCTATGCGGCAGCGAAC,TTTCTGAGCTGCCTACGCGGCAGCGAAC,TTTCTGAGCTGCCTACGCGGCAGCGAAC	28,28,31,36,28,28	1	1	5963364-5963395	NC_015563.1_3041066-3041035	I-F:I-F:I-F:I-F:I-F:I-F	63,62,56,56,56,62	63	TypeI-F	DinG,DEDDh,RT,WYL,Cas9_archaeal,cas3,csa3,PD-DExK,cas6f,cas7f,cas5f,cas8f,cas3-cas2,cas1	NA|135aa|up_0|NC_015563.1_5962833_5963238_+,NA	NA|191aa|up_9|NC_015563.1_5954818_5955391_-	PRK00116, ruvA, Holliday junction branch migration protein RuvA	NA|324aa|up_8|NC_015563.1_5955516_5956488_+	COG1702, PhoH, Phosphate starvation-inducible protein PhoH, predicted ATPase [Signal transduction mechanisms]	NA|153aa|up_7|NC_015563.1_5956564_5957023_+	PRK13963, PRK13963, rRNA maturation RNase YbeY	NA|329aa|up_6|NC_015563.1_5957047_5958034_-	cd08288, MDR_yhdh, Yhdh putative quinone oxidoreductases	NA|419aa|up_5|NC_015563.1_5958076_5959333_-	pfam02515, CoA_transf_3, CoA-transferase family III	NA|324aa|up_4|NC_015563.1_5959355_5960327_-	cd13578, PBP2_Bug27, Aromatic solutes transporter of Bug (Bordetella uptake gene) protein family;  contains the type 2 periplasmic binding fold	NA|315aa|up_3|NC_015563.1_5960445_5961390_+	cd05466, PBP2_LTTR_substrate, The substrate binding domain of LysR-type transcriptional regulators (LTTRs), a member of the type 2 periplasmic binding fold protein superfamily	NA|253aa|up_2|NC_015563.1_5961580_5962339_+	pfam01925, TauE, Sulfite exporter TauE/SafE	NA|122aa|up_1|NC_015563.1_5962349_5962715_-	pfam03869, Arc, Arc-like DNA binding domain	NA|135aa|up_0|NC_015563.1_5962833_5963238_+	NA	cas6f|189aa|down_0|NC_015563.1_5967196_5967763_-	pfam09618, Cas_Csy4, CRISPR-associated protein (Cas_Csy4)	cas7f|343aa|down_1|NC_015563.1_5967768_5968797_-	pfam09615, Cas_Csy3, CRISPR-associated protein (Cas_Csy3)	cas5f|373aa|down_2|NC_015563.1_5968851_5969970_-	pfam09614, Cas_Csy2, CRISPR-associated protein (Cas_Csy2)	cas8f|466aa|down_3|NC_015563.1_5969966_5971364_-	cd09735, Csy1_I-F, CRISPR/Cas system-associated protein Csy1	NA|94aa|down_4|NC_015563.1_5971530_5971812_+	COG3549, HigB, Plasmid maintenance system killer protein [General function prediction only]	NA|104aa|down_5|NC_015563.1_5971893_5972205_+	TIGR02607, Virulence-associated_protein_I, addiction module antidote protein, HigA family	cas3-cas2|1163aa|down_6|NC_015563.1_5972208_5975697_-	TIGR02562, conserved_hypothetical_protein, CRISPR-associated helicase Cas3, subtype I-F/YPEST	cas1|341aa|down_7|NC_015563.1_5975693_5976716_-	TIGR03637, cas1_YPEST, CRISPR-associated endonuclease Cas1, subtype I-F/YPEST	NA|592aa|down_8|NC_015563.1_5976831_5978607_-	PRK06156, PRK06156, dipeptidase	NA|157aa|down_9|NC_015563.1_5978718_5979189_-	PRK05273, PRK05273, D-tyrosyl-tRNA(Tyr) deacylase; Provisional
