assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000214355.1_ASM21435v1	NC_015577	Treponema azotonutricium ZAS-9, complete sequence	1	2606603-2606701	1	CRISPRCasFinder	no		WYL,csa3,PD-DExK,cas3,DEDDh,DinG,PrimPol,csx20,csx1,cmr6gr7,cmr5gr11,cmr4gr7,cmr3gr5,cas10,csm3gr7,cas6,cas1,cas2	Orphan	GGTCAAGGCTTGCGCCTTGGCTCTAGTAAGGAATGG	36	1	1	2606639-2606665	NC_015577.1_356223-356197	NA	1	1	Orphan	WYL,csa3,PD-DExK,cas3,DEDDh,DinG,PrimPol,csx20,csx1,cmr6gr7,cmr5gr11,cmr4gr7,cmr3gr5,cas10,csm3gr7,cas6,cas1,cas2	NA,NA	NA|518aa|up_9|NC_015577.1_2589954_2591508_-	PRK09558, ushA, bifunctional UDP-sugar hydrolase/5'-nucleotidase periplasmic precursor; Reviewed	NA|162aa|up_8|NC_015577.1_2591560_2592046_-	cd00002, YbaK_deacylase, This CD includes cysteinyl-tRNA(Pro) deacylases from Haemophilus influenzae and Escherichia coli and other related bacterial proteins	NA|371aa|up_7|NC_015577.1_2592087_2593200_-	pfam04015, DUF362, Domain of unknown function (DUF362)	NA|588aa|up_6|NC_015577.1_2593319_2595083_+	smart00283, MA, Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer)	NA|900aa|up_5|NC_015577.1_2595120_2597820_-	TIGR02956, sensor_protein_TorS, TMAO reductase sytem sensor TorS	NA|332aa|up_4|NC_015577.1_2597812_2598808_-	COG1597, LCB5, Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase [Lipid metabolism / General function prediction only]	NA|388aa|up_3|NC_015577.1_2598932_2600096_+	PRK13560, PRK13560, hypothetical protein; Provisional	NA|643aa|up_2|NC_015577.1_2600108_2602037_-	TIGR02956, sensor_protein_TorS, TMAO reductase sytem sensor TorS	NA|1073aa|up_1|NC_015577.1_2602051_2605270_-	TIGR02956, sensor_protein_TorS, TMAO reductase sytem sensor TorS	NA|387aa|up_0|NC_015577.1_2605297_2606458_-	pfam10442, FIST_C, FIST C domain	NA|275aa|down_0|NC_015577.1_2606709_2607534_-	COG1082, IolE, Sugar phosphate isomerases/epimerases [Carbohydrate transport and metabolism]	NA|163aa|down_1|NC_015577.1_2607695_2608184_+	PRK07116, PRK07116, flavodoxin; Provisional	NA|400aa|down_2|NC_015577.1_2608185_2609385_+	COG0826, COG0826, Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]	NA|399aa|down_3|NC_015577.1_2609406_2610603_-	pfam01139, RtcB, tRNA-splicing ligase RtcB	NA|247aa|down_4|NC_015577.1_2610592_2611333_-	PRK08179, prfH, peptide chain release factor-like protein; Reviewed	NA|249aa|down_5|NC_015577.1_2612397_2613144_-	cd09006, PNP_EcPNPI-like, purine nucleoside phosphorylases similar to Escherichia coli PNP-I (DeoD) and Trichomonas vaginalis PNP	NA|301aa|down_6|NC_015577.1_2613174_2614077_-	COG1079, COG1079, Uncharacterized ABC-type transport system, permease component [General function prediction only]	NA|382aa|down_7|NC_015577.1_2614081_2615227_-	COG4603, COG4603, ABC-type uncharacterized transport system, permease component [General function prediction only]	NA|507aa|down_8|NC_015577.1_2615219_2616740_-	COG3845, COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only]	NA|533aa|down_9|NC_015577.1_2616877_2618476_+	cd08504, PBP2_OppA, The substrate-binding component of an ABC-type oligopetide import system contains the type 2 periplasmic binding fold
GCF_000214355.1_ASM21435v1	NC_015577	Treponema azotonutricium ZAS-9, complete sequence	2	2881858-2881965	2	CRISPRCasFinder	no		WYL,csa3,PD-DExK,cas3,DEDDh,DinG,PrimPol,csx20,csx1,cmr6gr7,cmr5gr11,cmr4gr7,cmr3gr5,cas10,csm3gr7,cas6,cas1,cas2	Orphan	TTGCCGCAGTTGGCGCAGAACTTGCCG	27	0	0	NA	NA	NA	1	1	Orphan	WYL,csa3,PD-DExK,cas3,DEDDh,DinG,PrimPol,csx20,csx1,cmr6gr7,cmr5gr11,cmr4gr7,cmr3gr5,cas10,csm3gr7,cas6,cas1,cas2	NA|305aa|up_6|NC_015577.1_2873120_2874035_-,NA|115aa|up_3|NC_015577.1_2880388_2880733_+,NA|84aa|up_1|NC_015577.1_2881187_2881439_+,NA|82aa|up_0|NC_015577.1_2881448_2881694_+,NA|457aa|down_0|NC_015577.1_2883107_2884478_-,NA|648aa|down_1|NC_015577.1_2884489_2886433_-,NA|640aa|down_2|NC_015577.1_2886824_2888744_-,NA|368aa|down_3|NC_015577.1_2888797_2889901_-,NA|374aa|down_4|NC_015577.1_2890065_2891187_-,NA|362aa|down_5|NC_015577.1_2891300_2892386_-,NA|135aa|down_6|NC_015577.1_2892406_2892811_-	NA|168aa|up_9|NC_015577.1_2870624_2871128_-	CHL00071, tufA, elongation factor Tu	NA|284aa|up_8|NC_015577.1_2871164_2872016_-	pfam04536, TPM_phosphatase, TPM domain	NA|365aa|up_7|NC_015577.1_2872025_2873120_-	COG1198, PriA, Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]	NA|305aa|up_6|NC_015577.1_2873120_2874035_-	NA	NA|1095aa|up_5|NC_015577.1_2874167_2877452_-	sd00036, LRR_3, leucine-rich repeats	NA|931aa|up_4|NC_015577.1_2877467_2880260_-	pfam13306, LRR_5, Leucine rich repeats (6 copies)	NA|115aa|up_3|NC_015577.1_2880388_2880733_+	NA	NA|97aa|up_2|NC_015577.1_2880729_2881020_+	cd18689, PIN_VapC-like, uncharacterized subfamily of the VapC-like nuclease family of the PIN domain superfamily	NA|84aa|up_1|NC_015577.1_2881187_2881439_+	NA	NA|82aa|up_0|NC_015577.1_2881448_2881694_+	NA	NA|457aa|down_0|NC_015577.1_2883107_2884478_-	NA	NA|648aa|down_1|NC_015577.1_2884489_2886433_-	NA	NA|640aa|down_2|NC_015577.1_2886824_2888744_-	NA	NA|368aa|down_3|NC_015577.1_2888797_2889901_-	NA	NA|374aa|down_4|NC_015577.1_2890065_2891187_-	NA	NA|362aa|down_5|NC_015577.1_2891300_2892386_-	NA	NA|135aa|down_6|NC_015577.1_2892406_2892811_-	NA	NA|405aa|down_7|NC_015577.1_2892902_2894117_-	COG0618, COG0618, Exopolyphosphatase-related proteins [General function prediction only]	NA|233aa|down_8|NC_015577.1_2894120_2894819_-	pfam14471, DUF4428, Domain of unknown function (DUF4428)	NA|866aa|down_9|NC_015577.1_2894888_2897486_-	pfam13290, CHB_HEX_C_1, Chitobiase/beta-hexosaminidase C-terminal domain
GCF_000214355.1_ASM21435v1	NC_015577	Treponema azotonutricium ZAS-9, complete sequence	3	3383326-3384664	1,3,1	PILER-CR,CRISPRCasFinder,CRT	no	csx20,csx1,cmr6gr7,cmr5gr11,cmr4gr7,cmr3gr5,cas10,csm3gr7,cas6,cas1,cas2,WYL	WYL,csa3,PD-DExK,cas3,DEDDh,DinG,PrimPol,csx20,csx1,cmr6gr7,cmr5gr11,cmr4gr7,cmr3gr5,cas10,csm3gr7,cas6,cas1,cas2	Type III-D,Type III-B,Type III-A,Type III-C	GTCTGAACAAATGACCTGATTAAAGGGATTAAGAC,GTCTGAACAAATGACCTGATTAAAGGGATTAAGAC,GTCTGAACAAATGACCTGATTAAAGGGATTAAGAC	35,35,35	0	0	NA	NA	NA:NA:NA	17,18,18	18	TypeIII-D,TypeIII-B,TypeIII-A,TypeIII-C	WYL,csa3,PD-DExK,cas3,DEDDh,DinG,PrimPol,csx20,csx1,cmr6gr7,cmr5gr11,cmr4gr7,cmr3gr5,cas10,csm3gr7,cas6,cas1,cas2	NA|75aa|up_9|NC_015577.1_3372769_3372994_+,csx20|133aa|up_8|NC_015577.1_3373475_3373874_-,NA|65aa|down_2|NC_015577.1_3386531_3386726_+,NA|399aa|down_6|NC_015577.1_3388452_3389649_-,NA|86aa|down_8|NC_015577.1_3390535_3390793_-	NA|75aa|up_9|NC_015577.1_3372769_3372994_+	NA	csx20|133aa|up_8|NC_015577.1_3373475_3373874_-	NA	csx1|441aa|up_7|NC_015577.1_3373849_3375172_-	pfam09455, Cas_DxTHG, CRISPR-associated (Cas) DxTHG family	cmr6gr7|355aa|up_6|NC_015577.1_3375190_3376255_-	TIGR01898, repair_system, CRISPR type III-B/RAMP module RAMP protein Cmr6	cmr5gr11|125aa|up_5|NC_015577.1_3376256_3376631_-	pfam09701, Cas_Cmr5, CRISPR-associated protein (Cas_Cmr5)	cmr4gr7|298aa|up_4|NC_015577.1_3376639_3377533_-	COG1336, COG1336, CRISPR system related protein, RAMP superfamily [Defense mechanisms]	cmr3gr5|328aa|up_3|NC_015577.1_3377545_3378529_-	cd09748, Cmr3_III-B, CRISPR/Cas system-associated RAMP superfamily protein Cmr3	cas10|824aa|up_2|NC_015577.1_3378532_3381004_-	cd09679, Cas10_III, CRISPR/Cas system-associated protein Cas10	csm3gr7|368aa|up_1|NC_015577.1_3381000_3382104_-	pfam03787, RAMPs, RAMP superfamily	cas6|308aa|up_0|NC_015577.1_3382104_3383028_-	pfam10040, CRISPR_Cas6, CRISPR-associated endoribonuclease Cas6	cas1|339aa|down_0|NC_015577.1_3384751_3385768_+	pfam01867, Cas_Cas1, CRISPR associated protein Cas1	cas2|92aa|down_1|NC_015577.1_3385764_3386040_+	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	NA|65aa|down_2|NC_015577.1_3386531_3386726_+	NA	NA|250aa|down_3|NC_015577.1_3386764_3387514_-	TIGR02895, RNA_polymerase_sigma_factor, RNA polymerase sigma-I factor	csx1|204aa|down_4|NC_015577.1_3387531_3388143_-	pfam09455, Cas_DxTHG, CRISPR-associated (Cas) DxTHG family	NA|103aa|down_5|NC_015577.1_3388156_3388465_-	COG2433, COG2433, Uncharacterized conserved protein [Function unknown]	NA|399aa|down_6|NC_015577.1_3388452_3389649_-	NA	WYL|232aa|down_7|NC_015577.1_3389729_3390425_-	pfam13280, WYL, WYL domain	NA|86aa|down_8|NC_015577.1_3390535_3390793_-	NA	NA|309aa|down_9|NC_015577.1_3390969_3391896_+	COG0535, COG0535, Predicted Fe-S oxidoreductases [General function prediction only]
GCF_000214355.1_ASM21435v1	NC_015577	Treponema azotonutricium ZAS-9, complete sequence	4	3386205-3386386	2,4	PILER-CR,CRISPRCasFinder	no	csx20,csx1,cmr6gr7,cmr5gr11,cmr4gr7,cmr3gr5,cas10,csm3gr7,cas6,cas1,cas2,WYL	WYL,csa3,PD-DExK,cas3,DEDDh,DinG,PrimPol,csx20,csx1,cmr6gr7,cmr5gr11,cmr4gr7,cmr3gr5,cas10,csm3gr7,cas6,cas1,cas2	Type III-D,Type III-B,Type III-A,Type III-C	GTGTCTGAACAAATGACCTGATTAAAGGGATTAAGACG,GTCTGAACAAATGACCTGATTAAAGGGATTAAGAC	38,35	0	0	NA	NA	NA:NA	2,2	2	TypeIII-D,TypeIII-B,TypeIII-A,TypeIII-C	WYL,csa3,PD-DExK,cas3,DEDDh,DinG,PrimPol,csx20,csx1,cmr6gr7,cmr5gr11,cmr4gr7,cmr3gr5,cas10,csm3gr7,cas6,cas1,cas2	NA,NA|65aa|down_0|NC_015577.1_3386531_3386726_+,NA|399aa|down_4|NC_015577.1_3388452_3389649_-,NA|86aa|down_6|NC_015577.1_3390535_3390793_-,NA|337aa|down_8|NC_015577.1_3391921_3392932_+	csx1|441aa|up_9|NC_015577.1_3373849_3375172_-	pfam09455, Cas_DxTHG, CRISPR-associated (Cas) DxTHG family	cmr6gr7|355aa|up_8|NC_015577.1_3375190_3376255_-	TIGR01898, repair_system, CRISPR type III-B/RAMP module RAMP protein Cmr6	cmr5gr11|125aa|up_7|NC_015577.1_3376256_3376631_-	pfam09701, Cas_Cmr5, CRISPR-associated protein (Cas_Cmr5)	cmr4gr7|298aa|up_6|NC_015577.1_3376639_3377533_-	COG1336, COG1336, CRISPR system related protein, RAMP superfamily [Defense mechanisms]	cmr3gr5|328aa|up_5|NC_015577.1_3377545_3378529_-	cd09748, Cmr3_III-B, CRISPR/Cas system-associated RAMP superfamily protein Cmr3	cas10|824aa|up_4|NC_015577.1_3378532_3381004_-	cd09679, Cas10_III, CRISPR/Cas system-associated protein Cas10	csm3gr7|368aa|up_3|NC_015577.1_3381000_3382104_-	pfam03787, RAMPs, RAMP superfamily	cas6|308aa|up_2|NC_015577.1_3382104_3383028_-	pfam10040, CRISPR_Cas6, CRISPR-associated endoribonuclease Cas6	cas1|339aa|up_1|NC_015577.1_3384751_3385768_+	pfam01867, Cas_Cas1, CRISPR associated protein Cas1	cas2|92aa|up_0|NC_015577.1_3385764_3386040_+	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	NA|65aa|down_0|NC_015577.1_3386531_3386726_+	NA	NA|250aa|down_1|NC_015577.1_3386764_3387514_-	TIGR02895, RNA_polymerase_sigma_factor, RNA polymerase sigma-I factor	csx1|204aa|down_2|NC_015577.1_3387531_3388143_-	pfam09455, Cas_DxTHG, CRISPR-associated (Cas) DxTHG family	NA|103aa|down_3|NC_015577.1_3388156_3388465_-	COG2433, COG2433, Uncharacterized conserved protein [Function unknown]	NA|399aa|down_4|NC_015577.1_3388452_3389649_-	NA	WYL|232aa|down_5|NC_015577.1_3389729_3390425_-	pfam13280, WYL, WYL domain	NA|86aa|down_6|NC_015577.1_3390535_3390793_-	NA	NA|309aa|down_7|NC_015577.1_3390969_3391896_+	COG0535, COG0535, Predicted Fe-S oxidoreductases [General function prediction only]	NA|337aa|down_8|NC_015577.1_3391921_3392932_+	NA	NA|275aa|down_9|NC_015577.1_3392934_3393759_+	TIGR04470, hypothetical_protein_ALIPUT_00462, radical SAM mobile pair protein B
GCF_000214355.1_ASM21435v1	NC_015577	Treponema azotonutricium ZAS-9, complete sequence	5	3748263-3748368	5	CRISPRCasFinder	no		WYL,csa3,PD-DExK,cas3,DEDDh,DinG,PrimPol,csx20,csx1,cmr6gr7,cmr5gr11,cmr4gr7,cmr3gr5,cas10,csm3gr7,cas6,cas1,cas2	Orphan	AGTGATTTGCAACCACTAAAAGCATGGTCTCCAATGC	37	0	0	NA	NA	NA	1	1	Orphan	WYL,csa3,PD-DExK,cas3,DEDDh,DinG,PrimPol,csx20,csx1,cmr6gr7,cmr5gr11,cmr4gr7,cmr3gr5,cas10,csm3gr7,cas6,cas1,cas2	NA|237aa|up_3|NC_015577.1_3740080_3740791_-,NA	NA|275aa|up_9|NC_015577.1_3731522_3732347_-	cd07208, Pat_hypo_Ecoli_yjju_like, Hypothetical patatin similar to yjju protein of Escherichia coli	NA|201aa|up_8|NC_015577.1_3732346_3732949_-	TIGR04409, LptC_YrbK, LPS export ABC transporter periplasmic protein LptC	NA|676aa|up_7|NC_015577.1_3733123_3735151_+	pfam02446, Glyco_hydro_77, 4-alpha-glucanotransferase	NA|696aa|up_6|NC_015577.1_3735557_3737645_-	smart00283, MA, Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer)	NA|200aa|up_5|NC_015577.1_3738017_3738617_+	pfam13508, Acetyltransf_7, Acetyltransferase (GNAT) domain	NA|414aa|up_4|NC_015577.1_3738721_3739963_+	pfam00872, Transposase_mut, Transposase, Mutator family	NA|237aa|up_3|NC_015577.1_3740080_3740791_-	NA	NA|48aa|up_2|NC_015577.1_3741023_3741167_+	pfam08020, DUF1706, Protein of unknown function (DUF1706)	NA|269aa|up_1|NC_015577.1_3741172_3741979_-	pfam13277, YmdB, YmdB-like protein	NA|510aa|up_0|NC_015577.1_3741990_3743520_-	TIGR03319, RNase_Y, ribonuclease Y	NA|73aa|down_0|NC_015577.1_3749837_3750056_-	pfam13424, TPR_12, Tetratricopeptide repeat	NA|68aa|down_1|NC_015577.1_3750237_3750441_-	pfam03683, UPF0175, Uncharacterized protein family (UPF0175)	NA|122aa|down_2|NC_015577.1_3750586_3750952_+	cd19923, REC_CheY_CheY3, phosphoacceptor receiver (REC) domain of chemotaxis response regulator CheY3 and similar CheY family proteins	NA|156aa|down_3|NC_015577.1_3750986_3751454_+	cd17906, CheX, chemotaxis phosphatase CheX	NA|380aa|down_4|NC_015577.1_3751472_3752612_+	pfam10442, FIST_C, FIST C domain	NA|643aa|down_5|NC_015577.1_3752624_3754553_+	cd16916, HATPase_CheA-like, Histidine kinase-like ATPase domain of the chemotaxis protein histidine kinase CheA, and some hybrid sensor histidine kinases	NA|348aa|down_6|NC_015577.1_3754665_3755709_+	pfam01145, Band_7, SPFH domain / Band 7 family	NA|370aa|down_7|NC_015577.1_3755747_3756857_+	COG0061, nadF, NAD kinase [Coenzyme metabolism]	NA|180aa|down_8|NC_015577.1_3757066_3757606_-	cd02062, Nitro_FMN_reductase, nitroreductase family protein	NA|399aa|down_9|NC_015577.1_3757669_3758866_-	pfam03008, DUF234, Archaea bacterial proteins of unknown function
