The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NC_015942	Acidithiobacillus ferrivorans SS3, complete sequence	3207552	410055	475132	3207552	integrase,transposase	uncultured_Caudovirales_phage(18.18%)	58	453041:453055	479001:479015
WP_087455007.1|410055_411223_+|transposase	IS3-like element ISAfe17 family transposase	transposase	S5WIU1	Leptospira_phage	30.8	3.6e-15
WP_158306914.1|412168_413035_+	DUF2034 domain-containing protein	NA	NA	NA	NA	NA
WP_014027894.1|413372_413996_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014027895.1|414670_415765_-|integrase	site-specific integrase	integrase	W6MYA3	Pseudomonas_phage	43.9	2.2e-67
WP_014027896.1|415993_417001_-|integrase	tyrosine-type recombinase/integrase	integrase	A0A2H4JDJ8	uncultured_Caudovirales_phage	35.7	1.4e-36
WP_014027897.1|416993_417224_-	DUF4224 domain-containing protein	NA	NA	NA	NA	NA
WP_014027899.1|417473_417743_-	hypothetical protein	NA	NA	NA	NA	NA
WP_041648384.1|417796_419287_-	ParB N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_014027901.1|419283_419469_-	hypothetical protein	NA	NA	NA	NA	NA
WP_041648388.1|419455_419689_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014027902.1|419675_419903_-	hypothetical protein	NA	NA	NA	NA	NA
WP_148260354.1|420045_420972_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014027904.1|421447_421876_-	helix-turn-helix transcriptional regulator	NA	A0A2H4J6J6	uncultured_Caudovirales_phage	44.8	8.2e-10
WP_158306915.1|422011_422188_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_014027905.1|422544_422958_-	type II toxin-antitoxin system MqsA family antitoxin	NA	NA	NA	NA	NA
WP_014027906.1|422959_423262_-	type II toxin-antitoxin system MqsR family toxin	NA	NA	NA	NA	NA
WP_014027907.1|423393_423825_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014027908.1|423829_424123_+	DUF1376 domain-containing protein	NA	NA	NA	NA	NA
WP_014027909.1|424109_424331_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014027910.1|424333_425332_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014027911.1|425343_426183_+	ATP-binding protein	NA	A0A1W6JP39	Morganella_phage	35.6	5.0e-27
WP_158306916.1|426131_426650_+	hypothetical protein	NA	NA	NA	NA	NA
WP_158306917.1|426659_427121_+	transglycosylase SLT domain-containing protein	NA	NA	NA	NA	NA
WP_014027914.1|427117_427741_+	DotI/IcmL/TraM family protein	NA	NA	NA	NA	NA
WP_014027915.1|427753_428854_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014027916.1|428843_430070_+	DotG/IcmE/VirB10 family protein	NA	NA	NA	NA	NA
WP_014027917.1|430080_430638_+	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA	NA
WP_014027918.1|430718_431330_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014027919.1|431345_431855_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014027920.1|431964_432186_+	DUF433 domain-containing protein	NA	NA	NA	NA	NA
WP_014027921.1|432185_432518_+	DUF5615 family PIN-like protein	NA	NA	NA	NA	NA
WP_014027922.1|434145_434547_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014027923.1|434619_436137_+	ATP-binding protein	NA	E5E3R2	Burkholderia_phage	24.0	1.2e-10
WP_014027924.1|436376_439085_+	AAA family ATPase	NA	A0A2K5B264	Erysipelothrix_phage	43.3	6.6e-206
WP_014027925.1|439874_440333_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014027926.1|440342_443339_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014027927.1|443413_446083_+	DUF1738 domain-containing protein	NA	A0A1V0EEV1	Caulobacter_phage	34.5	2.8e-23
WP_014027928.1|446164_446779_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014027929.1|446775_447321_+	hypothetical protein	NA	NA	NA	NA	NA
WP_148260314.1|447520_448405_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014027931.1|448401_450555_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014027932.1|450752_451751_+	LysR family transcriptional regulator	NA	Q6JIH3	Burkholderia_virus	25.1	4.9e-05
WP_014027933.1|451906_453601_+	NADH dehydrogenase subunit 5	NA	NA	NA	NA	NA
453041:453055	attL	TGGTTGACTGCGATC	NA	NA	NA	NA
WP_014027934.1|453597_456009_+	DUF2309 domain-containing protein	NA	NA	NA	NA	NA
WP_049786877.1|456118_457159_+	cache domain-containing protein	NA	NA	NA	NA	NA
WP_014027936.1|457188_458067_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014027937.1|458212_458758_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014027938.1|458821_459655_+	hypothetical protein	NA	NA	NA	NA	NA
WP_041648395.1|460161_460623_+	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_035191027.1|460718_460958_+	CDGSH iron-sulfur domain-containing protein	NA	NA	NA	NA	NA
WP_014027941.1|460991_461636_+	YceI family protein	NA	NA	NA	NA	NA
WP_014027942.1|461696_462575_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014027943.1|462606_463059_+	VOC family protein	NA	NA	NA	NA	NA
WP_014027944.1|463114_463342_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014027945.1|463860_466488_+	EAL domain-containing protein	NA	A0A127AWB9	Bacillus_phage	38.4	1.2e-13
WP_014027947.1|469444_470659_-|transposase	ISAzo13 family transposase	transposase	NA	NA	NA	NA
WP_041650265.1|470705_471746_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
WP_049786827.1|474874_475132_+|integrase	tyrosine-type recombinase/integrase	integrase	Q19US1	Mannheimia_phage	51.0	7.3e-06
479001:479015	attR	TGGTTGACTGCGATC	NA	NA	NA	NA
>prophage 2
NC_015942	Acidithiobacillus ferrivorans SS3, complete sequence	3207552	2015576	2025333	3207552	tRNA	Streptococcus_phage(12.5%)	8	NA	NA
WP_014029410.1|2015576_2016770_-	glutamate 5-kinase	NA	A0A1X9I5D0	Streptococcus_phage	39.7	1.0e-57
WP_014029411.1|2017021_2018566_-	glutamine-hydrolyzing GMP synthase	NA	A0A1V0SH76	Hokovirus	32.6	9.5e-16
WP_014029412.1|2018569_2020030_-	IMP dehydrogenase	NA	A0A1V0SHK8	Klosneuvirus	41.5	2.8e-94
WP_014029413.1|2020204_2021188_+	glycosyltransferase family 2 protein	NA	F1C5B0	Cronobacter_phage	47.0	9.5e-78
WP_014029414.1|2021329_2022826_+	polynucleotide adenylyltransferase PcnB	NA	H7BUW3	unidentified_phage	36.9	1.5e-26
WP_014029415.1|2022845_2024195_+|tRNA	CCA tRNA nucleotidyltransferase	tRNA	A0A2H4YF77	Aeromonas_phage	30.0	9.8e-17
WP_014029416.1|2024152_2024722_+	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	S4W084	Pandoravirus	35.2	7.8e-16
WP_014029417.1|2024718_2025333_+	deoxynucleoside kinase	NA	M1HR32	Paramecium_bursaria_Chlorella_virus	23.4	1.8e-05
>prophage 4
NC_015942	Acidithiobacillus ferrivorans SS3, complete sequence	3207552	2703773	2712596	3207552		Staphylococcus_phage(50.0%)	11	NA	NA
WP_014030046.1|2703773_2705456_+	ubiquinone biosynthesis regulatory protein kinase UbiB	NA	A0A2N9QVT9	Dishui_lake_phycodnavirus	28.4	7.6e-35
WP_014030047.1|2705513_2705867_+	LapA family protein	NA	NA	NA	NA	NA
WP_014030048.1|2705882_2706455_-	sel1 repeat family protein	NA	NA	NA	NA	NA
WP_014030049.1|2706618_2706939_-	DUF2934 domain-containing protein	NA	NA	NA	NA	NA
WP_014030050.1|2707056_2707500_-	transcription antitermination factor NusB	NA	NA	NA	NA	NA
WP_014030051.1|2707509_2707974_-	6,7-dimethyl-8-ribityllumazine synthase	NA	A0A2H4PQS3	Staphylococcus_phage	52.3	3.2e-36
WP_014030052.1|2707970_2709104_-	3,4-dihydroxy-2-butanone-4-phosphate synthase	NA	A0A2H4PQS2	Staphylococcus_phage	36.7	4.6e-52
WP_014030053.1|2709100_2709757_-	riboflavin synthase	NA	A0A2I2L4R9	Orpheovirus	33.7	3.3e-18
WP_041651110.1|2709760_2710834_-	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	NA	A0A2H4PQS8	Staphylococcus_phage	34.6	2.3e-40
WP_014030055.1|2710853_2711345_-	transcriptional repressor NrdR	NA	NA	NA	NA	NA
WP_014030056.1|2711351_2712596_-	serine hydroxymethyltransferase	NA	A0A219Y950	Aeromonas_phage	55.2	2.5e-99
