assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000213655.1_ASM21365v1	NC_015554	Alteromonas naphthalenivorans, complete sequence	1	478911-479026	1	CRISPRCasFinder	no		DEDDh,csa3,DinG,WYL,RT,cas3,PrimPol,cas14j	Orphan	TTTTCTTATTCATTAATTCGTGATTGAAATTGTGGGTGTCC	41	0	0	NA	NA	NA	1	1	Orphan	DEDDh,csa3,DinG,WYL,RT,cas3,PrimPol,cas14j	NA|313aa|up_7|NC_015554.1_472666_473605_-,NA|55aa|down_4|NC_015554.1_482349_482514_-	NA|112aa|up_9|NC_015554.1_469869_470205_+	cd07245, VOC_like, uncharacterized subfamily of vicinal oxygen chelate (VOC) family	NA|674aa|up_8|NC_015554.1_470299_472321_-	cd02930, DCR_FMN, 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain	NA|313aa|up_7|NC_015554.1_472666_473605_-	NA	NA|147aa|up_6|NC_015554.1_473795_474236_-	pfam14467, DUF4426, Domain of unknown function (DUF4426)	NA|180aa|up_5|NC_015554.1_474258_474798_-	pfam02325, YGGT, YGGT family	NA|274aa|up_4|NC_015554.1_474819_475641_-	PRK11880, PRK11880, pyrroline-5-carboxylate reductase; Reviewed	NA|229aa|up_3|NC_015554.1_475697_476384_-	cd06824, PLPDE_III_Yggs_like, Pyridoxal 5-phosphate (PLP)-binding TIM barrel domain of Type III PLP-Dependent Enzymes, Yggs-like proteins	NA|348aa|up_2|NC_015554.1_476408_477452_+	COG2805, PilT, Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]	NA|371aa|up_1|NC_015554.1_477461_478574_+	COG5008, PilU, Tfp pilus assembly protein, ATPase PilU [Cell motility and secretion / Intracellular trafficking and secretion]	NA|105aa|up_0|NC_015554.1_478579_478894_+	pfam09413, DUF2007, Putative prokaryotic signal transducing protein	NA|145aa|down_0|NC_015554.1_479272_479707_-	PRK00109, PRK00109, Holliday junction resolvase RuvX	NA|189aa|down_1|NC_015554.1_479699_480266_-	PRK00228, PRK00228, YqgE/AlgH family protein	NA|318aa|down_2|NC_015554.1_480308_481262_-	PRK05246, PRK05246, glutathione synthetase; Provisional	NA|243aa|down_3|NC_015554.1_481474_482203_-	PRK11713, PRK11713, 16S ribosomal RNA methyltransferase RsmE; Provisional	NA|55aa|down_4|NC_015554.1_482349_482514_-	NA	NA|281aa|down_5|NC_015554.1_483019_483862_+	PRK10334, PRK10334, small-conductance mechanosensitive channel MscS	NA|265aa|down_6|NC_015554.1_483941_484736_-	cd07331, M48C_Oma1_like, Peptidase M48C, integral membrane endopeptidase	NA|604aa|down_7|NC_015554.1_485059_486871_+	pfam01391, Collagen, Collagen triple helix repeat (20 copies)	NA|375aa|down_8|NC_015554.1_487223_488348_+	PRK07515, PRK07515, 3-oxoacyl-(acyl carrier protein) synthase III; Reviewed	NA|676aa|down_9|NC_015554.1_488474_490502_+	TIGR02916, sensor_histidine_kinase, putative PEP-CTERM system histidine kinase
GCF_000213655.1_ASM21365v1	NC_015554	Alteromonas naphthalenivorans, complete sequence	2	2633756-2633864	2	CRISPRCasFinder	no		DEDDh,csa3,DinG,WYL,RT,cas3,PrimPol,cas14j	Orphan	TTTTTTTAAAAGTGTAAGGCGAGTGCCACTGGTTCAA	37	0	0	NA	NA	NA	1	1	Orphan	DEDDh,csa3,DinG,WYL,RT,cas3,PrimPol,cas14j	NA|62aa|up_6|NC_015554.1_2626816_2627002_+,NA|327aa|up_5|NC_015554.1_2627081_2628062_+,NA|78aa|up_2|NC_015554.1_2629430_2629664_-,NA	NA|841aa|up_9|NC_015554.1_2622837_2625360_-	COG3127, COG3127, Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, permease component [Secondary metabolites biosynthesis, transport, and catabolism]	NA|233aa|up_8|NC_015554.1_2625375_2626074_-	COG4181, COG4181, Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]	NA|219aa|up_7|NC_015554.1_2626091_2626748_+	cd01822, Lysophospholipase_L1_like, Lysophospholipase L1-like subgroup of SGNH-hydrolases	NA|62aa|up_6|NC_015554.1_2626816_2627002_+	NA	NA|327aa|up_5|NC_015554.1_2627081_2628062_+	NA	NA|313aa|up_4|NC_015554.1_2628128_2629067_-	PRK10550, PRK10550, tRNA dihydrouridine(16) synthase DusC	NA|58aa|up_3|NC_015554.1_2629260_2629434_-	pfam06945, DUF1289, Protein of unknown function (DUF1289)	NA|78aa|up_2|NC_015554.1_2629430_2629664_-	NA	NA|313aa|up_1|NC_015554.1_2629731_2630670_-	cd06231, M14_REP34-like, Peptidase M14-like domain similar to rapid encystment phenotype 34 (REP34)	NA|470aa|up_0|NC_015554.1_2631954_2633364_-	PRK01406, gltX, glutamyl-tRNA synthetase; Reviewed	NA|542aa|down_0|NC_015554.1_2634625_2636251_+	cd17589, REC_TPR, phosphoacceptor receiver (REC) domain of uncharacterized tetratricopeptide repeat (TPR)-containing response regulators	NA|176aa|down_1|NC_015554.1_2636238_2636766_-	pfam13302, Acetyltransf_3, Acetyltransferase (GNAT) domain	NA|323aa|down_2|NC_015554.1_2636842_2637811_-	PRK00164, moaA, GTP 3',8-cyclase MoaA	NA|601aa|down_3|NC_015554.1_2638111_2639914_+	COG5265, ATM1, ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]	NA|72aa|down_4|NC_015554.1_2640088_2640304_+	pfam12843, QSregVF_b, Putative quorum-sensing-regulated virulence factor	NA|448aa|down_5|NC_015554.1_2641815_2643159_-	pfam01474, DAHP_synth_2, Class-II DAHP synthetase family	NA|258aa|down_6|NC_015554.1_2643241_2644015_-	PRK03695, PRK03695, vitamin B12-transporter ATPase; Provisional	NA|323aa|down_7|NC_015554.1_2644011_2644980_-	PRK03784, PRK03784, vtamin B12-transporter permease; Provisional	NA|156aa|down_8|NC_015554.1_2644982_2645450_-	cd16343, LMWPTP, Low molecular weight protein tyrosine phosphatase	NA|241aa|down_9|NC_015554.1_2645544_2646267_+	PRK05282, PRK05282, dipeptidase PepE
GCF_000213655.1_ASM21365v1	NC_015554	Alteromonas naphthalenivorans, complete sequence	3	3893736-3893848	3	CRISPRCasFinder	no		DEDDh,csa3,DinG,WYL,RT,cas3,PrimPol,cas14j	Orphan	AGCTTTTGCAGGTATTAGGTATGCCTACTGTTATGCATAGCC	42	0	0	NA	NA	NA	1	1	Orphan	DEDDh,csa3,DinG,WYL,RT,cas3,PrimPol,cas14j	NA|210aa|up_3|NC_015554.1_3889674_3890304_-,NA|322aa|up_2|NC_015554.1_3890300_3891266_-,NA	NA|579aa|up_9|NC_015554.1_3883100_3884837_-	COG2804, PulE, Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]	NA|426aa|up_8|NC_015554.1_3884833_3886111_-	sd00006, TPR, Tetratricopeptide repeat	NA|305aa|up_7|NC_015554.1_3886107_3887022_-	TIGR03015, pepcterm_ATPase, putative secretion ATPase, PEP-CTERM locus subfamily	NA|542aa|up_6|NC_015554.1_3887024_3888650_-	TIGR02519, related_to_type_II_protein_secretion_protein, pilus (MSHA type) biogenesis protein MshL	NA|114aa|up_5|NC_015554.1_3888699_3889041_-	pfam16537, T2SSB, Type II secretion system protein B	NA|215aa|up_4|NC_015554.1_3889033_3889678_-	pfam04612, T2SSM, Type II secretion system (T2SS), protein M	NA|210aa|up_3|NC_015554.1_3889674_3890304_-	NA	NA|322aa|up_2|NC_015554.1_3890300_3891266_-	NA	NA|188aa|up_1|NC_015554.1_3891358_3891922_-	pfam00300, His_Phos_1, Histidine phosphatase superfamily (branch 1)	NA|509aa|up_0|NC_015554.1_3892041_3893568_-	PRK12266, glpD, glycerol-3-phosphate dehydrogenase; Reviewed	NA|253aa|down_0|NC_015554.1_3893983_3894742_-	PRK10906, PRK10906, DeoR/GlpR family transcriptional regulator	NA|495aa|down_1|NC_015554.1_3894899_3896384_+	cd07786, FGGY_EcGK_like, Escherichia coli glycerol kinase-like proteins; belongs to the FGGY family of carbohydrate kinases	NA|481aa|down_2|NC_015554.1_3899491_3900934_+	cd10328, SLC5sbd_YidK, uncharacterized SLC5 subfamily, Escherichia coli YidK-like; solute binding domain	NA|514aa|down_3|NC_015554.1_3900946_3902488_+	pfam04820, Trp_halogenase, Tryptophan halogenase	NA|160aa|down_4|NC_015554.1_3902525_3903005_+	pfam07277, SapC, SapC	NA|84aa|down_5|NC_015554.1_3903016_3903268_+	pfam07277, SapC, SapC	NA|715aa|down_6|NC_015554.1_3903424_3905569_+	COG3345, GalA, Alpha-galactosidase [Carbohydrate transport and metabolism]	NA|372aa|down_7|NC_015554.1_3905612_3906728_-	pfam09976, TPR_21, Tetratricopeptide repeat-like domain	NA|426aa|down_8|NC_015554.1_3906950_3908228_-	COG4188, COG4188, Predicted dienelactone hydrolase [General function prediction only]	NA|393aa|down_9|NC_015554.1_3908389_3909568_-	cd06173, MFS_MefA_like, Macrolide efflux protein A and similar proteins of the Major Facilitator Superfamily of transporters
GCF_000213655.1_ASM21365v1	NC_015554	Alteromonas naphthalenivorans, complete sequence	4	4002040-4002145	4	CRISPRCasFinder	no		DEDDh,csa3,DinG,WYL,RT,cas3,PrimPol,cas14j	Orphan	ATTTCGAGGGGATGGGCACAAAACCC	26	0	0	NA	NA	NA	1	1	Orphan	DEDDh,csa3,DinG,WYL,RT,cas3,PrimPol,cas14j	NA|125aa|up_9|NC_015554.1_3992044_3992419_-,NA|129aa|up_8|NC_015554.1_3992677_3993064_+,NA|133aa|up_7|NC_015554.1_3993069_3993468_-,NA|55aa|up_3|NC_015554.1_3999555_3999720_-,NA|97aa|up_2|NC_015554.1_3999745_4000036_+,NA|97aa|down_3|NC_015554.1_4004884_4005175_-	NA|125aa|up_9|NC_015554.1_3992044_3992419_-	NA	NA|129aa|up_8|NC_015554.1_3992677_3993064_+	NA	NA|133aa|up_7|NC_015554.1_3993069_3993468_-	NA	NA|172aa|up_6|NC_015554.1_3996647_3997163_-	pfam13546, DDE_5, DDE superfamily endonuclease	NA|203aa|up_5|NC_015554.1_3997363_3997972_+	PRK10542, PRK10542, glutathionine S-transferase; Provisional	NA|282aa|up_4|NC_015554.1_3998172_3999018_+	COG0077, PheA, Prephenate dehydratase [Amino acid transport and metabolism]	NA|55aa|up_3|NC_015554.1_3999555_3999720_-	NA	NA|97aa|up_2|NC_015554.1_3999745_4000036_+	NA	NA|115aa|up_1|NC_015554.1_4000032_4000377_+	pfam05717, TnpB_IS66, IS66 Orf2 like protein	NA|501aa|up_0|NC_015554.1_4000466_4001969_+	pfam03050, DDE_Tnp_IS66, Transposase IS66 family	NA|219aa|down_0|NC_015554.1_4002280_4002937_-	pfam03349, Toluene_X, Outer membrane protein transport protein (OMPP1/FadL/TodX)	NA|501aa|down_1|NC_015554.1_4002951_4004454_-	pfam03050, DDE_Tnp_IS66, Transposase IS66 family	NA|115aa|down_2|NC_015554.1_4004543_4004888_-	pfam05717, TnpB_IS66, IS66 Orf2 like protein	NA|97aa|down_3|NC_015554.1_4004884_4005175_-	NA	NA|245aa|down_4|NC_015554.1_4005245_4005980_-	pfam03349, Toluene_X, Outer membrane protein transport protein (OMPP1/FadL/TodX)	NA|205aa|down_5|NC_015554.1_4005976_4006591_-	cd03022, DsbA_HCCA_Iso, DsbA family, 2-hydroxychromene-2-carboxylate (HCCA) isomerase subfamily; HCCA isomerase is a glutathione (GSH) dependent enzyme involved in the naphthalene catabolic pathway	NA|266aa|down_6|NC_015554.1_4006669_4007467_-	PRK06200, PRK06200, 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional	NA|196aa|down_7|NC_015554.1_4007566_4008154_-	cd00667, ring_hydroxylating_dioxygenases_beta, Ring hydroxylating dioxygenase beta subunit	NA|449aa|down_8|NC_015554.1_4008168_4009515_-	cd08881, RHO_alpha_C_NDO-like, C-terminal catalytic domain of the oxygenase alpha subunit of naphthalene 1,2-dioxygenase (NDO) and related aromatic ring hydroxylating dioxygenases	NA|276aa|down_9|NC_015554.1_4009543_4010371_-	cd07368, PhnC_Bs_like, PhnC is a Class III Extradiol ring-cleavage dioxygenase involved in the polycyclic aromatic hydrocarbon (PAH) catabolic pathway
