The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NC_016863	Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1, complete sequence	4817868	976228	984960	4817868	transposase,protease	Dickeya_phage(14.29%)	7	NA	NA
WP_001201751.1|976228_977347_+	macrolide transporter subunit MacA	NA	A0A140XAI1	Dickeya_phage	38.9	1.4e-08
WP_000125877.1|977343_979290_+	macrolide ABC transporter ATP-binding protein/permease MacB	NA	G9BWD6	Planktothrix_phage	43.1	2.0e-39
WP_000447499.1|979419_979641_-	cold shock-like protein CspD	NA	A0A2H4N7Y6	Lake_Baikal_phage	64.2	9.3e-18
WP_000520789.1|979964_980285_+|protease	ATP-dependent Clp protease adapter ClpS	protease	A0A1B1IT64	uncultured_Mediterranean_phage	45.7	4.5e-13
WP_000934063.1|980315_982592_+|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	protease	A0A223W0B1	Agrobacterium_phage	42.3	6.2e-165
WP_000502119.1|982783_983242_+|transposase	IS200/IS605-like element IS200F family transposase	transposase	I4AZI8	Saccharomonospora_phage	31.5	1.0e-13
WP_085983316.1|983704_984960_-|transposase	IS3-like element ISSen1 family transposase	transposase	Q6H9S3	Enterobacteria_phage	33.9	5.4e-17
>prophage 2
NC_016863	Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1, complete sequence	4817868	1035054	1133863	4817868	lysis,holin,tail,terminase,protease,portal,tRNA	Salmonella_phage(42.86%)	101	NA	NA
WP_001154025.1|1035054_1035858_+|tRNA	tRNA uridine 5-oxyacetic acid(34) methyltransferase CmoM	tRNA	NA	NA	NA	NA
WP_001288828.1|1035850_1037173_+	chromosome partition protein MukF	NA	NA	NA	NA	NA
WP_000060025.1|1037153_1037858_+	chromosome partition protein MukE	NA	NA	NA	NA	NA
WP_000572724.1|1037857_1042324_+	chromosome partition protein MukB	NA	NA	NA	NA	NA
WP_000925872.1|1042668_1044510_+	L,D-transpeptidase	NA	NA	NA	NA	NA
WP_000357052.1|1044769_1045318_+	YcbK family protein	NA	A0A0K1LKR7	Rhodobacter_phage	33.7	1.2e-05
WP_001109471.1|1045345_1045993_+	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_000462653.1|1046054_1047245_-	aspartate transaminase	NA	NA	NA	NA	NA
WP_000977713.1|1047429_1048521_-	porin OmpF	NA	Q1MVN1	Enterobacteria_phage	51.7	2.2e-99
WP_000117870.1|1049127_1050528_-|tRNA	asparagine--tRNA ligase	tRNA	A0A167RLM0	Powai_lake_megavirus	35.1	4.5e-81
WP_000762342.1|1050728_1051190_-	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_000544849.1|1051506_1052721_+	diaminopropionate ammonia-lyase	NA	NA	NA	NA	NA
WP_000893207.1|1052965_1054402_+	sodium:alanine symporter family protein	NA	NA	NA	NA	NA
WP_000191399.1|1054479_1055682_-	nicotinate phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_001262306.1|1055876_1057169_-	DUF3596 domain-containing protein	NA	S4TSP2	Salmonella_phage	99.8	1.0e-252
WP_000065276.1|1057213_1057462_-	excisionase family protein	NA	S4TND0	Salmonella_phage	100.0	4.7e-42
WP_001237031.1|1057502_1057742_-	DUF4060 family protein	NA	S4TR31	Salmonella_phage	100.0	2.0e-37
WP_001539618.1|1057784_1058942_-	recombinase RecT	NA	S4TTE8	Salmonella_phage	100.0	1.6e-217
WP_000017133.1|1058904_1061790_-	PD-(D/E)XK nuclease-like domain-containing protein	NA	S4TNL0	Salmonella_phage	97.3	0.0e+00
WP_001668146.1|1061916_1062216_-	hypothetical protein	NA	S4TSN6	Salmonella_phage	84.5	8.1e-49
WP_000917564.1|1062237_1062396_-	hypothetical protein	NA	H6WRX3	Salmonella_phage	98.1	1.2e-22
WP_014344008.1|1062388_1062649_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001038966.1|1062698_1063109_-	helix-turn-helix domain-containing protein	NA	A0A1B5FPF4	Escherichia_phage	42.4	8.1e-07
WP_000370145.1|1063228_1063468_+	helix-turn-helix domain-containing protein	NA	H6WRX5	Salmonella_phage	47.2	8.3e-12
WP_001574095.1|1063433_1063808_+	hypothetical protein	NA	S4TTD7	Salmonella_phage	99.2	3.9e-64
WP_000062941.1|1063892_1064876_+	replication protein	NA	H6WRX7	Salmonella_phage	100.0	1.9e-163
WP_000800013.1|1064878_1065628_+	ATP-binding protein	NA	S4TNF5	Salmonella_phage	99.2	1.1e-137
WP_000113629.1|1065638_1065986_+	DUF977 family protein	NA	H6WRX9	Salmonella_phage	89.6	5.4e-52
WP_000065108.1|1065982_1066294_+	ead/Ea22-like family protein	NA	A0A220NQV2	Salmonella_phage	97.2	7.2e-32
WP_014343823.1|1066371_1066662_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001217665.1|1066953_1067187_+	DinI family protein	NA	H6WRY5	Salmonella_phage	98.7	2.1e-36
WP_000807548.1|1067298_1067520_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000929805.1|1067602_1068205_+	DUF1367 family protein	NA	S4TTI0	Salmonella_phage	98.5	8.3e-109
WP_001096552.1|1068413_1069025_+	recombination protein NinG	NA	A0A0M4RU10	Salmonella_phage	91.6	6.9e-79
WP_001617856.1|1069021_1069168_+	YlcG family protein	NA	A0A0M5M7B2	Salmonella_phage	97.9	4.3e-19
WP_001047631.1|1069157_1069955_+	antitermination protein	NA	A0A0M4S661	Salmonella_phage	99.6	2.3e-151
WP_010989004.1|1070021_1070339_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001534733.1|1070512_1070638_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000798705.1|1070773_1071223_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001141973.1|1071583_1072270_-|protease	type III secretion system effector protease GtgA	protease	Q9MBM0	Phage_Gifsy-2	100.0	2.1e-132
WP_001574216.1|1072545_1072875_+|holin	phage holin, lambda family	holin	A0A0M3ULK9	Salmonella_phage	100.0	5.8e-56
WP_000984586.1|1072858_1073311_+	lysozyme	NA	A0A0M4R365	Salmonella_phage	97.3	2.3e-79
WP_001541990.1|1073328_1073808_+|lysis	lysis protein	lysis	Q56118	Enterobacteria_phage	77.0	1.4e-55
WP_000371784.1|1074015_1074549_+	DUF1441 family protein	NA	A0A291AWV8	Escherichia_phage	48.1	1.0e-33
WP_000989242.1|1074505_1076644_+|terminase	phage terminase large subunit family protein	terminase	A5LH27	Enterobacteria_phage	72.6	5.8e-290
WP_000196190.1|1076640_1076847_+	hypothetical protein	NA	A0A1W6JT66	Pseudomonas_phage	53.3	2.9e-05
WP_001009207.1|1076843_1078391_+|portal	phage portal protein	portal	A0A291AWU2	Escherichia_phage	64.3	2.8e-177
WP_010989008.1|1078314_1080396_+|protease	Clp protease ClpP	protease	A0A291AWT6	Escherichia_phage	69.5	4.8e-265
WP_001107908.1|1080486_1080810_+	DUF2190 family protein	NA	K7PLV6	Enterobacteria_phage	61.3	7.7e-29
WP_000774239.1|1080802_1081102_+	ATP-binding protein	NA	K7PH43	Enterobacteria_phage	45.1	4.5e-15
WP_000453194.1|1081082_1081649_+|tail	phage tail protein	tail	Q9G063	Phage_Gifsy-2	97.8	9.5e-14
WP_000196702.1|1081645_1082047_+|tail	tail protein	tail	K7PHM6	Enterobacterial_phage	60.9	1.5e-42
WP_000132756.1|1082058_1082808_+|tail	phage tail protein	tail	A0A291AWU6	Escherichia_phage	68.6	3.7e-90
WP_000478859.1|1082853_1083252_+|tail	phage minor tail protein G	tail	K7PLV8	Enterobacteria_phage	56.8	8.6e-30
WP_010989009.1|1083248_1083578_+|tail	phage tail assembly protein T	tail	A5LH37	Enterobacteria_phage	50.9	5.0e-23
WP_010989010.1|1083657_1086645_+|tail	phage tail tape measure protein	tail	A0A291AWX1	Escherichia_phage	62.1	8.2e-266
WP_000978296.1|1086641_1086974_+|tail	phage tail protein	tail	A5LH39	Enterobacteria_phage	61.5	3.3e-35
WP_000725267.1|1087072_1087570_+	Ail/Lom family outer membrane beta-barrel protein	NA	A0A1B0VBR9	Salmonella_phage	36.6	1.4e-16
WP_000877926.1|1087686_1088220_-	superoxide dismutase [Cu-Zn]	NA	Q9MC02	Salmonella_phage	54.0	1.8e-46
WP_001152415.1|1088309_1089005_+|tail	phage minor tail protein L	tail	A0A0K2FJ01	Enterobacteria_phage	66.7	1.3e-89
WP_000606351.1|1089014_1089752_+|tail	phage tail protein	tail	A0A0P0ZE89	Stx2-converting_phage	76.1	1.6e-114
WP_000246065.1|1089649_1090354_+|tail	tail assembly protein	tail	A5LH42	Enterobacteria_phage	62.6	9.2e-67
WP_000033415.1|1090425_1093776_+	host specificity protein J	NA	A0A0K2FI38	Escherichia_phage	68.6	0.0e+00
WP_000178849.1|1093814_1094057_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001144679.1|1094110_1096549_+|tail	prophage tail fiber N-terminal domain-containing protein	tail	A0A0K2FIZ6	Escherichia_phage	63.4	2.9e-91
WP_000143167.1|1096548_1097130_+|tail	tail fiber assembly protein	tail	A0A0M4RTP2	Salmonella_phage	89.5	1.7e-95
WP_001526469.1|1097605_1098574_+	SPI-2 type III secretion system effector SseI	NA	Q9MBL9	Phage_Gifsy-2	100.0	7.1e-195
WP_000334547.1|1099221_1099848_-	SOS response-associated peptidase	NA	A0A2H4J5W2	uncultured_Caudovirales_phage	63.2	1.4e-66
WP_010989011.1|1099916_1100216_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001525490.1|1100200_1100887_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000497441.1|1101157_1101349_-	DinI-like family protein	NA	S4TNM0	Salmonella_phage	95.2	6.2e-26
WP_000193784.1|1101775_1104388_+	aminopeptidase N	NA	A0A0P0IY26	Acinetobacter_phage	22.6	6.3e-20
WP_000291723.1|1104595_1105606_+	quinone-dependent dihydroorotate dehydrogenase	NA	NA	NA	NA	NA
WP_001220671.1|1105771_1106314_+	cell division protein ZapC	NA	NA	NA	NA	NA
WP_000224069.1|1106310_1107420_-	MOSC domain-containing protein	NA	NA	NA	NA	NA
WP_001086485.1|1107518_1109627_+	bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL	NA	NA	NA	NA	NA
WP_000053044.1|1109639_1111547_+	ABC transporter ATP-binding protein	NA	A0A2K9L3Z8	Tupanvirus	29.8	2.4e-53
WP_000333152.1|1111561_1112815_+	membrane integrity-associated transporter subunit PqiA	NA	NA	NA	NA	NA
WP_000433414.1|1112819_1114460_+	intermembrane transport protein PqiB	NA	NA	NA	NA	NA
WP_000759136.1|1114456_1115020_+	membrane integrity-associated transporter subunit PqiC	NA	NA	NA	NA	NA
WP_001537784.1|1115275_1115443_+	ribosome modulation factor	NA	NA	NA	NA	NA
WP_000227928.1|1115542_1116061_-	bifunctional 3-hydroxydecanoyl-ACP dehydratase/trans-2-decenoyl-ACP isomerase	NA	NA	NA	NA	NA
WP_000156453.1|1116129_1117890_-|protease	Lon protease family protein	protease	NA	NA	NA	NA
WP_000877172.1|1118075_1118528_+	macrodomain Ter protein MatP	NA	NA	NA	NA	NA
WP_001674965.1|1118599_1119652_-	porin OmpA	NA	NA	NA	NA	NA
WP_000288732.1|1120008_1120518_-	cell division inhibitor SulA	NA	NA	NA	NA	NA
WP_001202375.1|1120734_1121340_+	TfoX/Sxy family DNA transformation protein	NA	NA	NA	NA	NA
WP_000950880.1|1121326_1123480_-	TIGR01666 family membrane protein	NA	NA	NA	NA	NA
WP_001261222.1|1123498_1123945_-	YccF domain-containing protein	NA	NA	NA	NA	NA
WP_000420505.1|1124068_1126123_+	DNA helicase IV	NA	A7KV33	Bacillus_phage	27.6	8.5e-20
WP_000424187.1|1126158_1126617_-	methylglyoxal synthase	NA	NA	NA	NA	NA
WP_000847719.1|1126711_1127374_-	DUF2057 family protein	NA	NA	NA	NA	NA
WP_001537782.1|1127547_1127961_+	CoA-binding protein	NA	NA	NA	NA	NA
WP_000561983.1|1128005_1128323_-	heat shock protein HspQ	NA	NA	NA	NA	NA
WP_000140480.1|1128380_1129592_-	23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI	NA	NA	NA	NA	NA
WP_000859419.1|1129806_1130355_+	YbhB/YbcL family Raf kinase inhibitor-like protein	NA	NA	NA	NA	NA
WP_000548082.1|1130380_1131160_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_000072884.1|1131208_1131490_+	acylphosphatase	NA	NA	NA	NA	NA
WP_000904446.1|1131486_1131816_-	sulfurtransferase TusE	NA	NA	NA	NA	NA
WP_000374050.1|1131902_1132562_-|protease	FtsH protease modulator YccA	protease	A0A2H4JFM9	uncultured_Caudovirales_phage	51.9	2.3e-43
WP_000938191.1|1133182_1133863_-|protease	type III secretion system effector protease PipA	protease	Q9MBM0	Phage_Gifsy-2	70.6	8.3e-81
>prophage 3
NC_016863	Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1, complete sequence	4817868	2005331	2084675	4817868	integrase,lysis,capsid,holin,tail,transposase,terminase,protease,portal,head,plate	Salmonella_phage(86.36%)	102	2011869:2011884	2086298:2086313
WP_000502119.1|2005331_2005790_-|transposase	IS200/IS605-like element IS200F family transposase	transposase	I4AZI8	Saccharomonospora_phage	31.5	1.0e-13
WP_000659236.1|2005970_2007176_-	flagellin lysine-N-methylase	NA	NA	NA	NA	NA
WP_000079805.1|2007254_2008742_-	FliC/FljB family flagellin	NA	NA	NA	NA	NA
WP_000146802.1|2008998_2010402_+	flagellar filament capping protein FliD	NA	NA	NA	NA	NA
WP_000287764.1|2010416_2010824_+	flagellar export chaperone FliS	NA	NA	NA	NA	NA
WP_000204899.1|2010823_2011192_+	flagella biosynthesis regulatory protein FliT	NA	NA	NA	NA	NA
WP_000795487.1|2011263_2012748_+	alpha-amylase	NA	NA	NA	NA	NA
2011869:2011884	attL	TGAAAATATCGATTTT	NA	NA	NA	NA
WP_000754695.1|2012787_2013213_-	lipoprotein	NA	NA	NA	NA	NA
WP_001535233.1|2013398_2014604_+	selenium metabolism membrane protein YedE/FdhT	NA	NA	NA	NA	NA
WP_000790504.1|2014600_2014834_+	sulfurtransferase-like selenium metabolism protein YedF	NA	NA	NA	NA	NA
WP_000639596.1|2015098_2015485_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000719036.1|2015604_2015919_-	flagellar hook-basal body complex protein FliE	NA	NA	NA	NA	NA
WP_001276834.1|2016135_2017818_+	flagellar M-ring protein FliF	NA	NA	NA	NA	NA
WP_000067735.1|2017810_2018806_+	flagellar motor switch protein FliG	NA	NA	NA	NA	NA
WP_000064163.1|2018798_2019506_+	flagellar assembly protein FliH	NA	NA	NA	NA	NA
WP_000213257.1|2019505_2020876_+	flagellum-specific ATP synthase FliI	NA	NA	NA	NA	NA
WP_000046981.1|2020897_2021341_+	flagella biosynthesis chaperone FliJ	NA	NA	NA	NA	NA
WP_000631669.1|2021337_2022555_+	flagellar hook length control protein FliK	NA	NA	NA	NA	NA
WP_000132169.1|2022659_2023127_+	flagellar basal body-associated protein FliL	NA	NA	NA	NA	NA
WP_000502811.1|2023131_2024136_+	flagellar motor switch protein FliM	NA	NA	NA	NA	NA
WP_001282115.1|2024132_2024546_+	flagellar motor switch protein FliN	NA	NA	NA	NA	NA
WP_000978276.1|2024545_2024923_+	flagellar type III secretion system protein FliO	NA	NA	NA	NA	NA
WP_001253410.1|2024922_2025660_+	flagellar type III secretion system pore protein FliP	NA	NA	NA	NA	NA
WP_000187355.1|2025669_2025939_+	flagellar biosynthesis protein FliQ	NA	NA	NA	NA	NA
WP_000616953.1|2025947_2026742_+	flagellar type III secretion system protein FliR	NA	NA	NA	NA	NA
WP_000103974.1|2027023_2027647_+	transcriptional regulator RcsA	NA	NA	NA	NA	NA
WP_000867218.1|2027685_2027880_-	protein DsrB	NA	NA	NA	NA	NA
WP_000844798.1|2028008_2028236_+	YodD family peroxide/acid resistance protein	NA	NA	NA	NA	NA
WP_000948794.1|2028545_2029361_+	mannosyl-3-phosphoglycerate phosphatase-related protein	NA	NA	NA	NA	NA
WP_001119821.1|2029339_2031052_-	cellulose biosynthesis regulator YedQ	NA	A0A127AWB9	Bacillus_phage	37.4	1.2e-19
WP_000232161.1|2031216_2031402_-	YodC family protein	NA	NA	NA	NA	NA
WP_085983315.1|2031478_2032396_-	DUF808 domain-containing protein	NA	NA	NA	NA	NA
WP_001212264.1|2032565_2033486_+	drug/metabolite exporter YedA	NA	NA	NA	NA	NA
WP_000785978.1|2033474_2033945_-	very short patch repair endonuclease	NA	E5E3X5	Burkholderia_phage	46.9	1.2e-30
WP_001157322.1|2033925_2035356_-	DNA cytosine methyltransferase	NA	E5E3X6	Burkholderia_phage	57.4	1.0e-104
WP_000377041.1|2035429_2036125_-	phosphohydrolase	NA	A0A1D6Y7U0	Golden_Marseillevirus	27.1	2.8e-07
WP_000107430.1|2036216_2036516_-	membrane protein	NA	NA	NA	NA	NA
WP_001080680.1|2037165_2038362_+	porin OmpS1	NA	Q1MVN1	Enterobacteria_phage	56.1	1.8e-110
WP_024131109.1|2038622_2038811_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000208509.1|2038821_2039034_-	cold-shock protein	NA	A0A1W6JNX5	Morganella_phage	70.0	3.9e-21
WP_000457662.1|2039488_2040757_-	Y-family DNA polymerase	NA	I6RSM4	Salmonella_phage	92.2	4.2e-227
WP_000394196.1|2040759_2041179_-	translesion error-prone DNA polymerase V autoproteolytic subunit	NA	A0A1W6JNS2	Morganella_phage	60.5	8.5e-36
WP_000500831.1|2041305_2041467_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001526483.1|2042097_2042319_-	helix-turn-helix domain-containing protein	NA	Q8HAB1	Salmonella_phage	100.0	1.2e-36
WP_000492926.1|2042531_2043539_+	type III secretion system effector arginine glycosyltransferase	NA	Q8HAB2	Salmonella_phage	100.0	7.9e-197
WP_015701331.1|2043823_2044423_-|tail	tail fiber assembly protein	tail	Q8HAB3	Salmonella_phage	100.0	5.9e-107
WP_000554737.1|2044392_2045955_-	hypothetical protein	NA	Q8HAB4	Salmonella_phage	100.0	2.6e-287
WP_001207832.1|2045941_2046529_-	DUF2313 domain-containing protein	NA	A0A192Y5V3	Salmonella_phage	100.0	2.9e-114
WP_014343855.1|2046531_2047053_-|plate	baseplate J/gp47 family protein	plate	Q8HAB6	Salmonella_phage	100.0	2.9e-94
WP_014343856.1|2047087_2047633_-|plate	baseplate J/gp47 family protein	plate	Q8HAB7	Salmonella_phage	100.0	9.2e-99
WP_000605050.1|2047604_2048018_-	phage GP46 family protein	NA	Q8HAB8	Salmonella_phage	100.0	1.1e-75
WP_001273649.1|2048022_2048556_-|plate	phage baseplate assembly protein	plate	Q8HAB9	Salmonella_phage	100.0	1.4e-96
WP_001066635.1|2048555_2049614_-	hypothetical protein	NA	Q8HAC0	Salmonella_phage	99.7	6.6e-202
WP_000863818.1|2049610_2050951_-	DNA circularization N-terminal domain-containing protein	NA	A0A192Y5U9	Salmonella_phage	99.6	5.7e-251
WP_000785385.1|2050984_2052913_-|tail	phage tail tape measure protein	tail	Q8HAC2	Salmonella_phage	99.8	0.0e+00
WP_000588852.1|2052997_2053324_-|tail	phage tail assembly protein	tail	Q8HAC3	Salmonella_phage	99.1	2.3e-52
WP_000515952.1|2053320_2053677_-|tail	phage tail tube protein	tail	A0A192Y8K0	Salmonella_phage	100.0	2.6e-62
WP_001007991.1|2053676_2055173_-|tail	phage tail sheath subtilisin-like domain-containing protein	tail	Q8HAC5	Salmonella_phage	100.0	2.7e-278
WP_000497739.1|2055162_2055327_-	DUF2635 domain-containing protein	NA	Q8HAC6	Salmonella_phage	100.0	1.0e-24
WP_000779218.1|2055330_2055891_-	hypothetical protein	NA	Q8HAC7	Salmonella_phage	100.0	3.0e-105
WP_001135697.1|2055887_2056400_-	hypothetical protein	NA	Q8HAC8	Salmonella_phage	100.0	4.6e-92
WP_000702408.1|2056371_2056776_-|head	phage head closure protein	head	Q8HAC9	Salmonella_phage	100.0	1.4e-72
WP_000927378.1|2056772_2057096_-|head,tail	phage gp6-like head-tail connector protein	head,tail	A0A192Y8J4	Salmonella_phage	100.0	6.3e-55
WP_000601353.1|2057098_2057299_-	hypothetical protein	NA	Q8HAD1	Salmonella_phage	100.0	1.4e-28
WP_000257528.1|2057349_2058555_-|capsid	phage major capsid protein	capsid	Q8HAD2	Salmonella_phage	100.0	1.6e-223
WP_001193639.1|2058569_2059220_-|head,protease	HK97 family phage prohead protease	head,protease	Q8HAD3	Salmonella_phage	100.0	1.5e-119
WP_000466254.1|2059197_2060439_-|portal	phage portal protein	portal	Q8HAD4	Salmonella_phage	99.8	2.0e-242
WP_000605609.1|2060438_2060621_-	hypothetical protein	NA	Q8HAD5	Salmonella_phage	100.0	1.0e-25
WP_000088182.1|2060632_2062366_-|terminase	terminase large subunit	terminase	Q8HAD6	Salmonella_phage	100.0	0.0e+00
WP_000929191.1|2062362_2062857_-|terminase	phage terminase small subunit P27 family	terminase	Q8HAD7	Salmonella_phage	100.0	4.6e-89
WP_001135225.1|2062982_2063333_-	HNH endonuclease	NA	Q8HA82	Salmonella_phage	100.0	2.5e-65
WP_001292890.1|2063393_2063696_-	hypothetical protein	NA	Q8HA83	Salmonella_phage	100.0	3.6e-52
WP_000877027.1|2063915_2064335_-	KilA-N domain-containing protein	NA	Q8HA84	Salmonella_phage	100.0	4.8e-71
WP_001050825.1|2064547_2065033_-|lysis	lysis protein	lysis	Q8HA85	Salmonella_phage	100.0	5.9e-81
WP_001005901.1|2065029_2065644_-	glycoside hydrolase family 19 protein	NA	Q8HA86	Salmonella_phage	100.0	9.3e-116
WP_001527046.1|2065646_2065991_-|holin	phage holin, lambda family	holin	Q8HA87	Salmonella_phage	100.0	5.3e-44
WP_014343859.1|2066152_2066587_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001527054.1|2066516_2066774_-	hypothetical protein	NA	Q8HA88	Salmonella_phage	100.0	5.2e-44
WP_000188927.1|2066906_2067530_-	hypothetical protein	NA	Q8HA89	Salmonella_phage	100.0	9.1e-119
WP_001202278.1|2067540_2068530_-	DUF968 domain-containing protein	NA	A0A1C9IHZ5	Salmonella_phage	97.6	9.2e-190
WP_001061457.1|2068537_2069398_-	KilA-N domain-containing protein	NA	Q8HA92	Salmonella_phage	100.0	2.9e-163
WP_001241579.1|2069414_2069804_-	RusA family crossover junction endodeoxyribonuclease	NA	Q8HA93	Salmonella_phage	100.0	3.7e-70
WP_000066908.1|2069800_2070694_-	phage N-6-adenine-methyltransferase	NA	Q8HA94	Salmonella_phage	100.0	7.6e-175
WP_001684745.1|2070693_2071176_-	PerC family transcriptional regulator	NA	Q8HA95	Salmonella_phage	100.0	1.1e-87
WP_000061500.1|2071177_2071996_-	helix-turn-helix domain-containing protein	NA	Q8HA96	Salmonella_phage	100.0	2.8e-136
WP_000620702.1|2071992_2072217_-	hypothetical protein	NA	A0A1C9II64	Salmonella_phage	100.0	3.3e-39
WP_001087402.1|2072213_2073371_-	Rha family transcriptional regulator	NA	Q8HA97	Salmonella_phage	100.0	4.2e-218
WP_000509731.1|2073367_2073922_-	hypothetical protein	NA	A0A1C9II13	Salmonella_phage	100.0	6.9e-102
WP_001191666.1|2073950_2074175_-	helix-turn-helix transcriptional regulator	NA	A0A1C9IHV8	Salmonella_phage	100.0	1.9e-34
WP_001020636.1|2074272_2074968_+	helix-turn-helix transcriptional regulator	NA	Q8HAA0	Salmonella_phage	100.0	3.2e-128
WP_000997190.1|2075782_2076154_+	hypothetical protein	NA	Q8HAA1	Salmonella_phage	100.0	1.1e-63
WP_000080415.1|2076211_2077039_+	DUF2303 family protein	NA	Q8HAA2	Salmonella_phage	100.0	7.5e-153
WP_000008351.1|2077175_2077715_+	hypothetical protein	NA	A0A192Y8M4	Salmonella_phage	100.0	2.6e-98
WP_000764235.1|2077785_2078016_+	hypothetical protein	NA	Q8HAA4	Salmonella_phage	100.0	2.0e-34
WP_000071070.1|2078012_2078528_+	DUF262 domain-containing protein	NA	Q8HAA5	Salmonella_phage	100.0	7.4e-98
WP_000065095.1|2078524_2079142_+	ead/Ea22-like family protein	NA	Q8HAA6	Salmonella_phage	100.0	2.6e-113
WP_000208068.1|2079138_2079972_+	hypothetical protein	NA	Q8HAA7	Salmonella_phage	100.0	4.7e-163
WP_001061334.1|2079975_2080545_+	3'-5' exoribonuclease	NA	A0A192Y6E0	Salmonella_phage	100.0	7.1e-110
WP_001527041.1|2080584_2080812_+	DUF4224 domain-containing protein	NA	Q8HAA9	Salmonella_phage	100.0	3.2e-37
WP_000532847.1|2080813_2081803_+|integrase	tyrosine-type recombinase/integrase	integrase	A0A192Y7M7	Salmonella_phage	100.0	8.6e-196
WP_000598920.1|2082094_2082892_+	DgsA anti-repressor MtfA	NA	NA	NA	NA	NA
WP_001219015.1|2084201_2084675_+	peptidase	NA	A0A0F6TJ61	Escherichia_coli_O157_typing_phage	77.6	7.1e-39
2086298:2086313	attR	TGAAAATATCGATTTT	NA	NA	NA	NA
>prophage 4
NC_016863	Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1, complete sequence	4817868	2170670	2181176	4817868		Enterobacteria_phage(37.5%)	10	NA	NA
WP_000126349.1|2170670_2171984_-	lipopolysaccharide biosynthesis protein RfbH	NA	H8ZJ36	Ostreococcus_tauri_virus	35.1	7.0e-52
WP_000565905.1|2172010_2173090_-	CDP-glucose 4,6-dehydratase	NA	A0A222YY99	Synechococcus_phage	24.1	6.6e-16
WP_000648784.1|2173094_2173868_-	glucose-1-phosphate cytidylyltransferase	NA	NA	NA	NA	NA
WP_000018226.1|2173864_2174857_-	CDP-6-deoxy-delta-3,4-glucoseen reductase	NA	NA	NA	NA	NA
WP_000973708.1|2174862_2175414_-	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	I7HJC4	Enterobacteria_phage	58.0	2.2e-52
WP_000857529.1|2175414_2176293_-	glucose-1-phosphate thymidylyltransferase RfbA	NA	I7I009	Enterobacteria_phage	65.5	9.3e-109
WP_001023662.1|2176340_2177240_-	dTDP-4-dehydrorhamnose reductase	NA	A0A291LA50	Escherichia_phage	36.3	1.4e-30
WP_000697840.1|2177239_2178325_-	dTDP-glucose 4,6-dehydratase	NA	I7HTA3	Enterobacteria_phage	53.9	1.2e-102
WP_000981469.1|2178701_2179595_-	GalU regulator GalF	NA	A0A127AW70	Bacillus_phage	42.2	4.8e-44
WP_001111841.1|2179772_2181176_-	colanic acid biosynthesis protein WcaM	NA	A0A291LBB9	Klebsiella_phage	27.1	3.1e-21
>prophage 5
NC_016863	Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1, complete sequence	4817868	2249483	2258654	4817868	tRNA	Enterobacteria_phage(66.67%)	10	NA	NA
WP_000195332.1|2249483_2251517_+|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SDF2	Indivirus	27.6	1.0e-54
WP_000703137.1|2251757_2252216_+	YehR family lipoprotein	NA	Q9EYF5	Enterobacteria_phage	72.5	8.4e-53
WP_001197952.1|2252387_2252918_+	YehR family lipoprotein	NA	NA	NA	NA	NA
WP_000950413.1|2252974_2253442_-	DUF1456 family protein	NA	Q9EYF4	Enterobacteria_phage	90.3	3.9e-74
WP_000598637.1|2253488_2254208_-	two-component system response regulator BtsR	NA	NA	NA	NA	NA
WP_000272845.1|2254204_2255890_-	sensor histidine kinase	NA	Q9EYF3	Enterobacteria_phage	91.1	6.2e-279
WP_001240418.1|2256112_2256844_+	HTH-type transcriptional regulator MlrA	NA	Q9EYF2	Enterobacteria_phage	87.9	4.5e-101
WP_001261696.1|2256903_2257011_+	protein YohO	NA	NA	NA	NA	NA
WP_000824855.1|2256991_2257723_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_000569166.1|2257706_2258654_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	31.2	1.7e-23
>prophage 6
NC_016863	Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1, complete sequence	4817868	2278061	2344456	4817868	tail,lysis,holin	Salmonella_phage(28.57%)	60	NA	NA
WP_000989296.1|2278061_2278757_+|lysis	CidB/LrgB family autolysis modulator	lysis	NA	NA	NA	NA
WP_000553526.1|2278910_2279795_+	cytidine deaminase	NA	NA	NA	NA	NA
WP_000920081.1|2279971_2280691_+	outer membrane permeability protein SanA	NA	NA	NA	NA	NA
WP_000605187.1|2280687_2280933_+	DUF2542 family protein	NA	NA	NA	NA	NA
WP_001136409.1|2281137_2282379_+	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_000956095.1|2282372_2283608_+	NAD-dependent dihydropyrimidine dehydrogenase subunit PreA	NA	NA	NA	NA	NA
WP_001275101.1|2283682_2284693_-	galactose/methyl galactoside ABC transporter permease MglC	NA	NA	NA	NA	NA
WP_000535907.1|2284708_2286229_-	galactose/methyl galactoside ABC transporter ATP-binding protein MglA	NA	F2Y2R6	Organic_Lake_phycodnavirus	31.9	1.0e-09
WP_001036943.1|2286362_2287361_-	galactose/glucose ABC transporter substrate-binding protein MglB	NA	NA	NA	NA	NA
WP_000628631.1|2287859_2288882_-	HTH-type transcriptional regulator GalS	NA	NA	NA	NA	NA
WP_001526153.1|2289031_2290174_-	DUF418 family protein	NA	NA	NA	NA	NA
WP_001139611.1|2290188_2290857_-	GTP cyclohydrolase I FolE	NA	M1Q6X8	Cellulophaga_phage	56.3	4.1e-56
WP_000425488.1|2291186_2292044_+	S-formylglutathione hydrolase	NA	NA	NA	NA	NA
WP_000876817.1|2292032_2292422_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_000443208.1|2292426_2293794_-	L-serine ammonia-lyase	NA	NA	NA	NA	NA
WP_000022915.1|2294010_2294898_+	phosphoserine phosphatase SerB	NA	NA	NA	NA	NA
WP_000023807.1|2294930_2296253_+	MFS transporter	NA	NA	NA	NA	NA
WP_000488255.1|2296296_2298288_-	catecholate siderophore receptor CirA	NA	A0A0P0I887	Acinetobacter_phage	37.9	6.7e-14
WP_000535000.1|2298632_2300102_-	lysine-specific permease	NA	NA	NA	NA	NA
WP_000548308.1|2300291_2301155_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_000137961.1|2301275_2302325_+	YeiH family protein	NA	NA	NA	NA	NA
WP_000873909.1|2302403_2303261_+	deoxyribonuclease IV	NA	A0A1V0SBL9	Catovirus	28.5	2.2e-22
WP_000854414.1|2303325_2305014_-	PTS fructose transporter subunit IIBC	NA	NA	NA	NA	NA
WP_000091249.1|2305030_2305969_-	1-phosphofructokinase	NA	NA	NA	NA	NA
WP_000487287.1|2305968_2307099_-	fused PTS fructose transporter subunit IIA/HPr protein	NA	NA	NA	NA	NA
WP_000551937.1|2307467_2308649_+	sugar efflux transporter SetB	NA	NA	NA	NA	NA
WP_001213882.1|2308713_2309379_-	membrane protein	NA	NA	NA	NA	NA
WP_001519564.1|2309380_2309503_-	membrane protein	NA	NA	NA	NA	NA
WP_010989043.1|2309890_2310145_-	YkgJ family cysteine cluster protein	NA	NA	NA	NA	NA
WP_001136822.1|2310468_2311041_+	elongation factor P-like protein YeiP	NA	NA	NA	NA	NA
WP_000169350.1|2311253_2312240_+	GTP-binding protein	NA	NA	NA	NA	NA
WP_000178095.1|2312269_2312989_+	phosphatase PAP2 family protein	NA	NA	NA	NA	NA
WP_000241015.1|2313402_2313975_+	bifunctional murein DD-endopeptidase/murein LD-carboxypeptidase	NA	A0A1V0DZX6	Clostridioides_phage	38.9	8.1e-13
WP_000957746.1|2314300_2315857_+	cyclic di-GMP phosphodiesterase	NA	NA	NA	NA	NA
WP_000561748.1|2315963_2317769_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_000501623.1|2317778_2318873_+	microcin C ABC transporter permease YejB	NA	NA	NA	NA	NA
WP_001137764.1|2318872_2319898_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_000203622.1|2319899_2321489_+	microcin C ABC transporter ATP-binding protein YejF	NA	G9BWD6	Planktothrix_phage	32.5	8.5e-20
WP_001094639.1|2321492_2321837_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000213347.1|2322227_2323418_-	Bcr/CflA family multidrug efflux MFS transporter	NA	S4TR35	Salmonella_phage	22.2	2.4e-19
WP_001234836.1|2323445_2324141_-	16S rRNA pseudouridine(516) synthase RsuA	NA	NA	NA	NA	NA
WP_000578121.1|2324292_2326053_+	DEAD/DEAH box helicase	NA	M4Q3N1	Vibrio_phage	41.6	1.9e-100
WP_000494192.1|2326177_2326462_+	50S ribosomal protein L25	NA	NA	NA	NA	NA
WP_000033440.1|2326570_2327191_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000050806.1|2327218_2328226_-	nucleoid-associated protein YejK	NA	A0A1V0E8C0	Vibrio_phage	48.3	4.5e-83
WP_001135904.1|2328405_2328633_+	YejL family protein	NA	NA	NA	NA	NA
WP_000256150.1|2328664_2330425_+	cardiolipin transport protein PbgA	NA	NA	NA	NA	NA
WP_000806401.1|2330705_2331209_-	LexA family transcriptional regulator	NA	Q1MVE7	Enterobacteria_phage	71.3	9.5e-50
WP_000884778.1|2331236_2331527_+	DinI family protein	NA	S4TND2	Salmonella_phage	83.3	4.7e-25
WP_000639473.1|2331874_2333704_+	acyltransferase	NA	C6ZR20	Salmonella_phage	29.6	3.0e-61
WP_000022213.1|2333757_2334201_-|tail	tail fiber assembly protein	tail	A0A0F7LDZ0	Escherichia_phage	43.9	1.4e-28
WP_001215679.1|2334578_2335106_-|tail	tail fiber assembly protein	tail	A0A1S6KZZ1	Salmonella_phage	31.3	3.1e-11
WP_000554739.1|2335108_2336350_-	hypothetical protein	NA	Q8HAB4	Salmonella_phage	95.3	1.0e-52
WP_001120499.1|2336942_2337272_-|holin	phage holin, lambda family	holin	Q8SBE1	Shigella_phage	94.6	3.9e-36
WP_000894640.1|2337568_2338900_+	AAA family ATPase	NA	R9TRQ8	Vibrio_phage	28.5	2.1e-19
WP_010989045.1|2338928_2339297_-	antitermination protein Q	NA	A5LH77	Enterobacteria_phage	81.7	7.4e-52
WP_014344510.1|2339311_2340301_-	DUF968 domain-containing protein	NA	A0A1C9IHZ5	Salmonella_phage	97.3	2.4e-190
WP_001115840.1|2340629_2342996_-	SPI-2 type III secretion system effector E3 ubiquitin transferase SspH2	NA	Q9MBL9	Phage_Gifsy-2	88.7	2.9e-72
WP_001113462.1|2343164_2343368_-|tail	tail protein	tail	NA	NA	NA	NA
WP_000624225.1|2343664_2344456_-|tail	tail fiber protein	tail	Q1MVL8	Enterobacteria_phage	31.6	1.7e-48
>prophage 7
NC_016863	Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1, complete sequence	4817868	2683348	2790536	4817868	integrase,lysis,capsid,holin,tail,head,transposase,terminase,protease,portal,tRNA	Salmonella_phage(40.62%)	111	2707893:2707909	2798440:2798456
WP_000940032.1|2683348_2684080_-|tRNA	tRNA (cytosine(32)/uridine(32)-2'-O)-methyltransferase TrmJ	tRNA	NA	NA	NA	NA
WP_000553467.1|2684198_2685002_+	inositol-1-monophosphatase	NA	NA	NA	NA	NA
WP_000174944.1|2685146_2686025_+	alpha/beta hydrolase	NA	A0A1C9C5K3	Heterosigma_akashiwo_virus	24.7	3.5e-15
WP_000985204.1|2686206_2687250_+	anaerobic sulfite reductase subunit A	NA	NA	NA	NA	NA
WP_000017587.1|2687253_2688072_+	anaerobic sulfite reductase subunit B	NA	NA	NA	NA	NA
WP_000020685.1|2688082_2689096_+	sulfite reductase subunit C	NA	NA	NA	NA	NA
WP_000111027.1|2689096_2690083_-	nickel/cobalt transporter	NA	NA	NA	NA	NA
WP_000805728.1|2690073_2690712_-	DUF1007 family protein	NA	NA	NA	NA	NA
WP_000982961.1|2690837_2692115_+	stationary phase inducible protein CsiE	NA	NA	NA	NA	NA
WP_001173729.1|2692109_2693249_-	3-phenylpropionate MFS transporter	NA	NA	NA	NA	NA
WP_000919178.1|2693444_2694698_-	serine hydroxymethyltransferase	NA	A0A240F3L3	Aeromonas_phage	53.0	1.3e-100
WP_000883146.1|2695022_2696213_+	NO-inducible flavohemoprotein	NA	NA	NA	NA	NA
WP_001187150.1|2696394_2697939_+	lysine decarboxylation/transport transcriptional activator CadC	NA	NA	NA	NA	NA
WP_000100008.1|2698299_2699631_+	cadaverine/lysine antiporter	NA	NA	NA	NA	NA
WP_001100652.1|2699713_2701858_+	lysine decarboxylase CadA	NA	NA	NA	NA	NA
WP_000856793.1|2701913_2703374_+	dipeptide permease DtpD	NA	A0A0P0IY73	Acinetobacter_phage	28.8	1.7e-46
WP_000717694.1|2703422_2703761_-	nitrogen regulatory protein P-II	NA	NA	NA	NA	NA
WP_000625591.1|2703837_2705175_-	two-component system response regulator GlrR	NA	W8CYM9	Bacillus_phage	29.2	1.8e-10
WP_001054236.1|2705171_2705936_-	two-component system QseEF-associated lipoprotein QseG	NA	NA	NA	NA	NA
WP_001670672.1|2705937_2707368_-	two component system sensor histidine kinase QseE/GlrK	NA	W8CYF6	Bacillus_phage	26.1	2.0e-15
2707893:2707909	attL	CGCCTTATCCGGCCTAC	NA	NA	NA	NA
WP_000970045.1|2708017_2711905_-	phosphoribosylformylglycinamidine synthase	NA	A9YX36	Burkholderia_phage	57.6	1.4e-127
WP_001747289.1|2711926_2712160_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000734248.1|2712160_2713705_+	membrane-bound lytic murein transglycosylase MltF	NA	NA	NA	NA	NA
WP_001134566.1|2713755_2714307_-|tRNA	tRNA adenosine(34) deaminase TadA	tRNA	NA	NA	NA	NA
WP_000253558.1|2714331_2714967_-	phosphatidylglycerophosphatase C	NA	NA	NA	NA	NA
WP_000361663.1|2714970_2716332_-	PTS transporter subunit EIIC	NA	NA	NA	NA	NA
WP_001048530.1|2716342_2717236_-	N-acetylmuramic acid 6-phosphate etherase	NA	NA	NA	NA	NA
WP_000995703.1|2717351_2718200_+	MurR/RpiR family transcriptional regulator	NA	NA	NA	NA	NA
WP_000684022.1|2718238_2719156_-	oxidoreductase	NA	NA	NA	NA	NA
WP_001276370.1|2719177_2720374_-	OFA family MFS transporter	NA	NA	NA	NA	NA
WP_001022463.1|2720489_2721416_+	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	24.4	3.0e-09
WP_001196290.1|2721453_2721714_+	YfhL family 4Fe-4S dicluster ferredoxin	NA	A0A1B1IWY9	uncultured_Mediterranean_phage	52.3	1.4e-17
WP_000986043.1|2721825_2722206_-	holo-ACP synthase	NA	NA	NA	NA	NA
WP_000818972.1|2722205_2722937_-	pyridoxine 5'-phosphate synthase	NA	NA	NA	NA	NA
WP_000399380.1|2722948_2723677_-	DNA repair protein RecO	NA	NA	NA	NA	NA
WP_000102232.1|2723688_2724594_-	GTPase Era	NA	NA	NA	NA	NA
WP_001068341.1|2724590_2725271_-	ribonuclease III	NA	A0A2K9L5P0	Tupanvirus	31.8	7.4e-21
WP_000002559.1|2725544_2726519_-	signal peptidase I	NA	NA	NA	NA	NA
WP_000790154.1|2726535_2728335_-	elongation factor 4	NA	E4ZFJ7	Streptococcus_phage	24.9	7.2e-23
WP_010989047.1|2728739_2730233_+	type III secretion effector GogB	NA	Q9MBM1	Phage_Gifsy-1	100.0	3.4e-260
WP_001542312.1|2730705_2730843_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001526383.1|2731555_2731675_-|transposase	transposase	transposase	NA	NA	NA	NA
WP_001738443.1|2732427_2732640_-	helix-turn-helix domain-containing protein	NA	S4TTF2	Salmonella_phage	90.6	3.8e-08
WP_010989049.1|2732746_2732974_+	phage virulence factor PagK family protein	NA	NA	NA	NA	NA
WP_000143154.1|2733070_2733649_-|tail	tail fiber assembly protein	tail	A0A0M4RTP2	Salmonella_phage	88.9	3.6e-93
WP_000593433.1|2733638_2734463_-	macro domain-containing protein	NA	A0A0M4QWS3	Salmonella_phage	92.0	1.2e-145
WP_001144694.1|2734459_2736832_-|tail	prophage tail fiber N-terminal domain-containing protein	tail	A0A0K2FIZ6	Escherichia_phage	65.6	1.1e-90
WP_000178853.1|2736885_2737128_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000514917.1|2737166_2740529_-	host specificity protein J	NA	K7PKJ2	Enterobacteria_phage	79.7	0.0e+00
WP_000246126.1|2740590_2741238_-|tail	tail assembly protein	tail	A5LH42	Enterobacteria_phage	77.7	2.1e-89
WP_000662739.1|2741135_2741873_-|tail	phage tail protein	tail	K7PLW1	Enterobacteria_phage	85.0	5.2e-129
WP_001152689.1|2741879_2742578_-|tail	phage minor tail protein L	tail	A0A1B5FP81	Escherichia_phage	76.3	5.5e-104
WP_000447369.1|2742587_2742917_-|tail	phage tail protein	tail	A5LH39	Enterobacteria_phage	70.4	1.3e-42
WP_000372072.1|2742919_2746015_-|tail	phage tail tape measure protein	tail	A0A291AWX1	Escherichia_phage	62.3	6.1e-280
WP_010989052.1|2745986_2746325_-|tail	phage tail assembly protein T	tail	A5LH37	Enterobacteria_phage	62.4	1.3e-31
WP_000479607.1|2746321_2746717_-|tail	phage minor tail protein G	tail	A5LH36	Enterobacteria_phage	56.5	2.3e-30
WP_000971954.1|2746767_2747514_-	Ig-like domain-containing protein	NA	A0A291AWU6	Escherichia_phage	76.9	1.9e-99
WP_000033885.1|2747521_2747923_-|tail	tail protein	tail	Q9G0F3	Phage_Gifsy-1	100.0	8.1e-52
WP_000817263.1|2748031_2749162_+|transposase	transposase	transposase	Q9G0F2	Phage_Gifsy-1	100.0	9.2e-218
WP_000677089.1|2749210_2749789_-|tail	phage tail protein	tail	A5LH33	Enterobacteria_phage	80.2	3.7e-82
WP_000083294.1|2749816_2750200_-|head,tail	head-tail joining protein	head,tail	A0A0K2FJB7	Enterobacteria_phage	55.6	9.2e-29
WP_000201486.1|2750210_2750570_-	DNA-packaging protein FI	NA	NA	NA	NA	NA
WP_000522566.1|2750627_2751656_-|capsid	major capsid protein	capsid	C6ZCY2	Enterobacteria_phage	61.1	1.7e-114
WP_000011260.1|2751710_2752058_-|head	head decoration protein	head	A0A2R9YJN3	Escherichia_phage	52.7	9.2e-20
WP_001189503.1|2752070_2753567_-	S49 family peptidase	NA	A0A0K2FI53	Enterobacteria_phage	52.2	8.1e-97
WP_000831821.1|2753556_2755137_-|portal	phage portal protein	portal	K7P6U7	Enterobacteria_phage	62.8	9.6e-189
WP_000201415.1|2755133_2755337_-	gpW family protein	NA	K7PM10	Enterobacteria_phage	73.8	1.9e-17
WP_000623091.1|2755320_2757252_-|terminase	phage terminase large subunit family protein	terminase	A0A0K2FJ14	Enterobacteria_phage	65.7	6.3e-259
WP_001102153.1|2757223_2757769_-|terminase	terminase small subunit	terminase	A0A0U2S671	Escherichia_phage	80.6	1.5e-56
WP_000669690.1|2758055_2758457_+	pre-peptidase C-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_001533543.1|2758692_2759145_-|lysis	lysis protein	lysis	A0A0M4RD57	Salmonella_phage	92.7	2.9e-66
WP_001687248.1|2759162_2759615_-	lysozyme	NA	A0A0M4R365	Salmonella_phage	97.3	3.9e-79
WP_001574216.1|2759598_2759928_-|holin	phage holin, lambda family	holin	A0A0M3ULK9	Salmonella_phage	100.0	5.8e-56
WP_001110787.1|2760203_2760890_+|protease	type III secretion system effector protease GogA	protease	Q9MBM2	Phage_Gifsy-1	99.6	3.6e-132
WP_000657897.1|2761104_2761293_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000211410.1|2761799_2762363_-	ORF6N domain-containing protein	NA	A0A0P0ZC44	Stx2-converting_phage	92.2	7.6e-56
WP_001097241.1|2762635_2763313_-	antitermination protein	NA	I6PDF8	Cronobacter_phage	54.0	7.7e-63
WP_000801757.1|2763309_2763450_-	YlcG family protein	NA	A0A0M5M7B2	Salmonella_phage	78.9	7.2e-08
WP_001096550.1|2763446_2764058_-	recombination protein NinG	NA	A0A0M4RU10	Salmonella_phage	99.0	1.2e-91
WP_000929791.1|2764266_2764869_-	DUF1367 family protein	NA	S4TTI0	Salmonella_phage	99.0	2.8e-109
WP_014343878.1|2764903_2765152_-	hypothetical protein	NA	A0A0U2C0C8	Salmonella_phage	100.0	1.6e-42
WP_001217669.1|2765268_2765502_-	DinI family protein	NA	H6WRY5	Salmonella_phage	100.0	5.6e-37
WP_000704096.1|2765771_2766764_+	M85 family metallopeptidase	NA	NA	NA	NA	NA
WP_000065102.1|2766790_2767309_-	ead/Ea22-like family protein	NA	S4TNP2	Salmonella_phage	89.8	1.4e-40
WP_000113618.1|2767305_2767653_-	DUF977 family protein	NA	H6WRX9	Salmonella_phage	96.5	2.7e-56
WP_000800012.1|2767663_2768413_-	ATP-binding protein	NA	S4TNF5	Salmonella_phage	100.0	4.3e-139
WP_024134098.1|2768415_2769504_-	replication protein	NA	H6WRX7	Salmonella_phage	88.8	1.3e-155
WP_010835408.1|2769588_2769963_-	hypothetical protein	NA	S4TTD7	Salmonella_phage	98.4	1.9e-63
WP_001274939.1|2769922_2770165_-	helix-turn-helix domain-containing protein	NA	A0A0M4QX15	Salmonella_phage	67.9	5.6e-24
WP_014344514.1|2770237_2770651_+	helix-turn-helix domain-containing protein	NA	A0A0M4R5D1	Salmonella_phage	78.0	1.5e-45
WP_000106861.1|2770793_2771903_+	AAA family ATPase	NA	E7C9Q8	Salmonella_phage	58.4	1.6e-118
WP_000917561.1|2772383_2772542_+	hypothetical protein	NA	H6WRX3	Salmonella_phage	96.2	2.6e-22
WP_014344515.1|2772563_2772914_+	hypothetical protein	NA	S4TSN6	Salmonella_phage	94.0	2.7e-59
WP_000017130.1|2773040_2775968_+	PD-(D/E)XK nuclease-like domain-containing protein	NA	H6WRX1	Salmonella_phage	95.7	0.0e+00
WP_077905217.1|2775930_2777088_+	recombinase RecT	NA	S4TTE8	Salmonella_phage	99.5	1.8e-216
WP_001237032.1|2777130_2777370_+	DUF4060 family protein	NA	H6WRW9	Salmonella_phage	97.5	2.2e-36
WP_014344516.1|2777410_2777695_+	excisionase Xis	NA	H6WRW8	Salmonella_phage	87.2	1.1e-42
WP_001007935.1|2777672_2778902_-|integrase	site-specific integrase	integrase	H6WRW7	Salmonella_phage	94.1	6.4e-233
WP_000589087.1|2779399_2779879_-	SoxR-reducing system protein RseC	NA	NA	NA	NA	NA
WP_000812017.1|2779875_2780832_-	sigma-E factor regulatory protein RseB	NA	NA	NA	NA	NA
WP_001168374.1|2780831_2781482_-	anti-sigma-E factor RseA	NA	NA	NA	NA	NA
WP_000003307.1|2781513_2782089_-	RNA polymerase sigma factor RpoE	NA	NA	NA	NA	NA
WP_014344135.1|2782085_2782250_-	rpoE leader peptide RseD	NA	NA	NA	NA	NA
WP_000989177.1|2782513_2784136_+	L-aspartate oxidase	NA	NA	NA	NA	NA
WP_000083343.1|2784120_2784858_-|tRNA	tRNA(1)(Val) (adenine(37)-N(6))-methyltransferase TrmN	tRNA	NA	NA	NA	NA
WP_000219174.1|2784988_2786323_+	ATP-dependent RNA helicase SrmB	NA	A0A1B1IS59	uncultured_Mediterranean_phage	29.7	1.6e-43
WP_001526875.1|2786340_2787240_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_000188414.1|2787342_2787930_+	cysteine/O-acetylserine transporter	NA	NA	NA	NA	NA
WP_000627811.1|2787991_2788375_-	autonomous glycyl radical cofactor GrcA	NA	Q7Y524	Enterobacteria_phage	74.0	6.1e-33
WP_000179978.1|2788693_2789383_+	uracil-DNA glycosylase	NA	A0A172DS90	Canid_alphaherpesvirus	49.5	4.6e-55
WP_000997368.1|2789498_2790536_-|tRNA	tRNA/rRNA methyltransferase	tRNA	NA	NA	NA	NA
2798440:2798456	attR	GTAGGCCGGATAAGGCG	NA	NA	NA	NA
>prophage 8
NC_016863	Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1, complete sequence	4817868	4379062	4399482	4817868	tail,plate,holin	Burkholderia_phage(45.0%)	26	NA	NA
WP_000587738.1|4379062_4379791_-	hypothetical protein	NA	A0A077SLK3	Escherichia_phage	37.3	5.6e-35
WP_010989092.1|4379987_4380278_-	membrane protein	NA	NA	NA	NA	NA
WP_000084331.1|4380526_4380982_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001526208.1|4380978_4381584_-	DUF4376 domain-containing protein	NA	NA	NA	NA	NA
WP_000368196.1|4381588_4383334_-|tail	tail fiber protein	tail	A0A0M3ULF6	Salmonella_phage	52.2	3.2e-52
WP_000359500.1|4383336_4383969_-|tail	phage tail protein I	tail	Q6QI98	Burkholderia_phage	56.4	6.6e-24
WP_000951736.1|4383961_4385077_-|plate	baseplate J/gp47 family protein	plate	Q6QI99	Burkholderia_phage	52.2	1.8e-101
WP_001093501.1|4385067_4385427_-	GPW/gp25 family protein	NA	Q6QIA0	Burkholderia_phage	64.2	2.8e-35
WP_001095011.1|4385590_4387138_-	membrane protein	NA	B9UDL6	Salmonella_phage	29.9	1.9e-48
WP_000703632.1|4387137_4388067_-	glycosyltransferase family 2 protein	NA	S5FKN0	Shigella_phage	83.8	8.8e-150
WP_000593182.1|4388063_4388426_-	GtrA family protein	NA	I1TED9	Salmonella_phage	70.8	1.2e-43
WP_000679398.1|4388753_4389476_-|plate	phage baseplate assembly protein V	plate	A0A067ZIM2	Vibrio_phage	41.0	3.3e-11
WP_000818154.1|4389485_4390529_-	phage late control D family protein	NA	Q6QIA2	Burkholderia_phage	45.1	2.5e-76
WP_001269716.1|4390516_4390726_-|tail	tail protein X	tail	A4JWL2	Burkholderia_virus	60.3	9.8e-17
WP_000271423.1|4390725_4391679_-	methyl-accepting chemotaxis protein	NA	A4JWL1	Burkholderia_virus	50.8	2.3e-36
WP_001262500.1|4391678_4394033_-|tail	phage tail tape measure protein	tail	A4JWL0	Burkholderia_virus	30.6	6.9e-66
WP_001185654.1|4394129_4394258_-|tail	GpE family phage tail protein	tail	NA	NA	NA	NA
WP_001003642.1|4394217_4394535_-|tail	phage tail assembly protein	tail	NA	NA	NA	NA
WP_000907494.1|4394586_4395111_-|tail	phage major tail tube protein	tail	Q6QIA9	Burkholderia_phage	69.5	2.8e-68
WP_000729852.1|4395110_4396538_-|tail	phage tail sheath family protein	tail	A4JWK5	Burkholderia_virus	70.9	1.1e-194
WP_000875314.1|4396527_4396725_-	hypothetical protein	NA	Q6QIB1	Burkholderia_phage	52.9	8.6e-07
WP_000449433.1|4396721_4397177_-	Gp37 family protein	NA	NA	NA	NA	NA
WP_000777266.1|4397336_4397651_-	membrane protein	NA	Q6QIC4	Burkholderia_phage	49.1	6.4e-20
WP_001270440.1|4397663_4398269_-	lytic transglycosylase domain-containing protein	NA	Q5ZQZ1	Pseudomonas_phage	59.4	1.2e-59
WP_001226442.1|4398271_4398559_-|holin	putative holin	holin	Q6QIC8	Burkholderia_phage	49.1	2.3e-16
WP_000615248.1|4399134_4399482_+	DNA-binding protein	NA	Q6QIE8	Burkholderia_phage	51.5	4.9e-21
>prophage 1
NC_016864	Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 plasmid pSTUK-100, complete sequence	93277	22643	31939	93277	transposase	Escherichia_phage(28.57%)	11	NA	NA
WP_001541564.1|22643_23060_+	hypothetical protein	NA	O64348	Escherichia_phage	42.9	8.2e-07
WP_001527010.1|23243_23579_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001541562.1|23635_24202_+	DUF2913 family protein	NA	NA	NA	NA	NA
WP_000728917.1|24233_25175_-|transposase	Rpn family recombination-promoting nuclease/putative transposase	transposase	Q2A0A7	Sodalis_phage	54.3	2.0e-72
WP_000427676.1|25589_26795_+	AAA family ATPase	NA	A0A077SL49	Escherichia_phage	69.3	1.5e-162
WP_000064274.1|26794_27769_+	ParB/RepB/Spo0J family partition protein	NA	A0A1B0V750	Salmonella_phage	53.2	5.1e-84
WP_000457541.1|27850_29125_-	Y-family DNA polymerase	NA	F1C5A5	Cronobacter_phage	64.5	3.0e-156
WP_000925627.1|29124_29547_-	translesion error-prone DNA polymerase V autoproteolytic subunit	NA	A0A1W6JNS2	Morganella_phage	51.6	1.0e-28
WP_000490265.1|30057_30528_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000369839.1|30520_30877_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000088645.1|31258_31939_+	DNA methylase	NA	A0A2I7RE86	Vibrio_phage	36.4	1.6e-28
